HHsearch alignment for GI: 254780867 and conserved domain: PRK06277

>PRK06277 hydrogenase subunit F; Validated.
Probab=100.00  E-value=0  Score=578.32  Aligned_cols=403  Identities=23%  Similarity=0.376  Sum_probs=344.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             16764100799999999999999999999996321002242066799999999998731461022124577788777766
Q gi|254780867|r   67 GGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLI  146 (478)
Q Consensus        67 ~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI  146 (478)
T Consensus        65 ~i~~~~d~l~~~~~~~~~l~~~---l~~~~~~~-~~~~~~~f~~l~l~~~~~~~g~~~s~dl~~~fvf~E~~~i~sy~Li  140 (479)
T PRK06277         65 GITYLYGPAKQLIITVLMLIAS---LVLITGLG-EKKSSGLYVALMLMGLASVSAIVLADDIFNIYVFFEIAAIAQVGLV  140 (479)
T ss_pred             CCEEEECHHHHHHHHHHHHHHH---HHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7010453066999999999999---99999951-0346788999999999999999999789999999999999999999


Q ss_pred             HHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             53200013445555540146204679988988530010000012222111013431000012222112344444321100
Q gi|254780867|r  147 AMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFH  226 (478)
Q Consensus       147 ~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH  226 (478)
T Consensus       141 ~~~~~~-~~~~aa~ky~i~~~~gs~~~L~gi~~ly~~tgs~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~l~PfH  219 (479)
T PRK06277        141 IASGTE-KAYRTALKYMILGNVAGSILLLGIAFLLAATGTLNISDMHNFLLNNPTTPTIYGGLLMLIIGLLYGSGLPPFH  219 (479)
T ss_pred             HHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_conf             977989-9999999999999999999999999999996795799999998719640899999999999999998742342


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             0121012210012333321000002321111124400011--22210000012221022220000012445443564211
Q gi|254780867|r  227 MWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPM--LSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSI  304 (478)
Q Consensus       227 ~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~--~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi  304 (478)
T Consensus       220 ~Wlpday~~ap~~~salLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~tii~g~l~Al~Q~dlKrllAYSSI  299 (479)
T PRK06277        220 TVKADIYAKAKPFGSALLQTYSKFVLVALMLVIFKLFGGLSYFASAQGVLIALSVLAMVFGVVMALLQTDYKKLLAYHAI  299 (479)
T ss_pred             HCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             14033407686799999999999999999999999702244468999999999999999999999971246888888789


Q ss_pred             CCCCCCCCCCCCHH-HHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             12442111111215-77888864300232010011000026787408764550210466523211478999986530366
Q gi|254780867|r  305 GHAGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGI  383 (478)
Q Consensus       305 ~q~G~i~~~l~~~~-~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~Gl  383 (478)
T Consensus       300 s~~Gyi~lgi~~~~~~~~~gai~~~i~h~~~k~~LFl-~g~i~~~~~--~~~i~~l~Gl~~~~P~~a~~~~i~~lsl~Gi  376 (479)
T PRK06277        300 SQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFL-GAHIVYRTK--EGNLNKLGGLLPVMPAVAFMVLCAKLAISGV  376 (479)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCC--CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999837688899999999999999999999-999999559--8529986281867799999999999999866


Q ss_pred             CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------CCCCCHHHHHHHHHHHH
Q ss_conf             500006759999999996284999999999999999999999999964998778655------67332189999999999
Q gi|254780867|r  384 PPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVVV------VAKEMRLFIFGSILFVT  457 (478)
Q Consensus       384 Pp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~~~~~~~  457 (478)
T Consensus       377 Pp~~GF~sK~~i~~~a~~~~~~~l~~~~~~~sv~~~~y~lr~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~i  456 (479)
T PRK06277        377 PPFNGFQSKLLLAQAAMNVNMPELAIIMIIVSIGTFVSMMKAFYLIYLKPCPEEQLEEYKKAKVPKYAVFSLVVLTILCI  456 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             66427999999999999838799999999999999999999999996088885433334667898879999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999767658999998751
Q gi|254780867|r  458 GYFLIENILNSSIMKIVMSL  477 (478)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~l  477 (478)
T Consensus       457 ~~Gi~P~~~l~~i~p~~~~l  476 (479)
T PRK06277        457 ILGICPDLVTNIIYPFANEI  476 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99963399999899999986