HHsearch alignment for GI: 254780867 and conserved domain: PRK06277
>PRK06277 hydrogenase subunit F; Validated.
Probab=100.00 E-value=0 Score=578.32 Aligned_cols=403 Identities=23% Similarity=0.376 Sum_probs=344.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 16764100799999999999999999999996321002242066799999999998731461022124577788777766
Q gi|254780867|r 67 GGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLI 146 (478)
Q Consensus 67 ~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI 146 (478)
T Consensus 65 ~i~~~~d~l~~~~~~~~~l~~~---l~~~~~~~-~~~~~~~f~~l~l~~~~~~~g~~~s~dl~~~fvf~E~~~i~sy~Li 140 (479)
T PRK06277 65 GITYLYGPAKQLIITVLMLIAS---LVLITGLG-EKKSSGLYVALMLMGLASVSAIVLADDIFNIYVFFEIAAIAQVGLV 140 (479)
T ss_pred CCEEEECHHHHHHHHHHHHHHH---HHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7010453066999999999999---99999951-0346788999999999999999999789999999999999999999
Q ss_pred HHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53200013445555540146204679988988530010000012222111013431000012222112344444321100
Q gi|254780867|r 147 AMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFH 226 (478)
Q Consensus 147 ~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH 226 (478)
T Consensus 141 ~~~~~~-~~~~aa~ky~i~~~~gs~~~L~gi~~ly~~tgs~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~l~PfH 219 (479)
T PRK06277 141 IASGTE-KAYRTALKYMILGNVAGSILLLGIAFLLAATGTLNISDMHNFLLNNPTTPTIYGGLLMLIIGLLYGSGLPPFH 219 (479)
T ss_pred HHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_conf 977989-9999999999999999999999999999996795799999998719640899999999999999998742342
Q ss_pred HHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0121012210012333321000002321111124400011--22210000012221022220000012445443564211
Q gi|254780867|r 227 MWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPM--LSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSI 304 (478)
Q Consensus 227 ~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~--~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi 304 (478)
T Consensus 220 ~Wlpday~~ap~~~salLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~tii~g~l~Al~Q~dlKrllAYSSI 299 (479)
T PRK06277 220 TVKADIYAKAKPFGSALLQTYSKFVLVALMLVIFKLFGGLSYFASAQGVLIALSVLAMVFGVVMALLQTDYKKLLAYHAI 299 (479)
T ss_pred HCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 14033407686799999999999999999999999702244468999999999999999999999971246888888789
Q ss_pred CCCCCCCCCCCCHH-HHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 12442111111215-77888864300232010011000026787408764550210466523211478999986530366
Q gi|254780867|r 305 GHAGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGI 383 (478)
Q Consensus 305 ~q~G~i~~~l~~~~-~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~Gl 383 (478)
T Consensus 300 s~~Gyi~lgi~~~~~~~~~gai~~~i~h~~~k~~LFl-~g~i~~~~~--~~~i~~l~Gl~~~~P~~a~~~~i~~lsl~Gi 376 (479)
T PRK06277 300 SQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFL-GAHIVYRTK--EGNLNKLGGLLPVMPAVAFMVLCAKLAISGV 376 (479)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCC--CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999837688899999999999999999999-999999559--8529986281867799999999999999866
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------CCCCCHHHHHHHHHHHH
Q ss_conf 500006759999999996284999999999999999999999999964998778655------67332189999999999
Q gi|254780867|r 384 PPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVVV------VAKEMRLFIFGSILFVT 457 (478)
Q Consensus 384 Pp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 457 (478)
T Consensus 377 Pp~~GF~sK~~i~~~a~~~~~~~l~~~~~~~sv~~~~y~lr~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~i 456 (479)
T PRK06277 377 PPFNGFQSKLLLAQAAMNVNMPELAIIMIIVSIGTFVSMMKAFYLIYLKPCPEEQLEEYKKAKVPKYAVFSLVVLTILCI 456 (479)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 66427999999999999838799999999999999999999999996088885433334667898879999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999767658999998751
Q gi|254780867|r 458 GYFLIENILNSSIMKIVMSL 477 (478)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~l 477 (478)
T Consensus 457 ~~Gi~P~~~l~~i~p~~~~l 476 (479)
T PRK06277 457 ILGICPDLVTNIIYPFANEI 476 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99963399999899999986