HHsearch alignment for GI: 254780867 and conserved domain: PRK06458
>PRK06458 hydrogenase 4 subunit F; Validated.
Probab=100.00 E-value=0 Score=587.30 Aligned_cols=424 Identities=21% Similarity=0.282 Sum_probs=361.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999997132210031676410079999999999999999999999632100-------22420667999999999987
Q gi|254780867|r 51 IALFFLLIMPYEGIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPF-------SCFEFPVIMLMAVLGMLCMI 123 (478)
Q Consensus 51 i~l~~~~~~~~~~~~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~-------~~~~f~~l~l~~~~g~~~~~ 123 (478)
T Consensus 46 l~~~~~~~~~~~~~~~~~~~~~D~ls~~~~~l~~~i~~~~~lys~~y~~~~~~~~~~~~~~~~~y~~l~ll~~~g~~g~~ 125 (491)
T PRK06458 46 LWLVQTVVDAGEIFAAGLWFHVDDLNVLFLALTGFVGFLTSLYSIGYMRHEVEHGELSPVRLRLYYGMYQLFLFTMLLAL 125 (491)
T ss_pred HHHHHHHCCCCCEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999982578600024034451767999999999999999998899864031033342147699999999999999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH-------
Q ss_conf 3146102212457778877776653200013445555540146204679988988530010000012222111-------
Q gi|254780867|r 124 SANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSL------- 196 (478)
Q Consensus 124 ~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~------- 196 (478)
T Consensus 126 ~s~dl~~~~vf~El~~i~sy~Li~~~~~-~~~~~Aa~ky~i~~~~gs~~~L~gi~~ly~~~gtl~~~~~~~~~~~~~~~~ 204 (491)
T PRK06458 126 TSNNLGLMWVAIEATTLSSVLLVGIYRT-RASLEAAWKYFILCSVGIAFALFGTILVYAAAATVMGDGEDAMLWTVLLAV 204 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9818999999999999999999996796-899999999999999999999999999999999886205788888889876
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCC--CCCCCCEE
Q ss_conf 0134310000122221123444443211000121012210012333321000002321111124400011--22210000
Q gi|254780867|r 197 FIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPM--LSGLLPIF 274 (478)
Q Consensus 197 ~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~--~~~~~~~l 274 (478)
T Consensus 205 ~~~~~~~~~~l~~~l~l~g~~~K~a~~PfH~WlPday~~aPt~vSalls~v~~k~g~y~llr~~~~~~~~~~~~~~~~~l 284 (491)
T PRK06458 205 ASLLDPTLMSLAFVFLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSAVLSGVLLNVALYALLRYYIIIDAAIGSDFPGRLL 284 (491)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 32245379999999999999988562526688505756088438999999999999999999999861202579999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCC
Q ss_conf 0122210222200000124454435642111244211111121-577888864300232010011000026787408764
Q gi|254780867|r 275 MCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNI 353 (478)
Q Consensus 275 ~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~ 353 (478)
T Consensus 285 ~~lg~lsii~g~l~Al~Q~dlKrlLAYSsIsq~G~i~~gi~~~~~~~~~~al~~~i~h~l~k~~LFl~~g~i~~~~g--~ 362 (491)
T PRK06458 285 LIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLITFAFGIGGPLGNFAALLHMLNHSLTKSAIFFASGNVLQKYG--T 362 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--C
T ss_conf 99999999999999999837668999999999999999999588789999999999999999899999999999859--8
Q ss_pred CCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 55021046652321147899998653036650000675999999999628499999999999999999999999996499
Q gi|254780867|r 354 QNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQ 433 (478)
Q Consensus 354 ~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~ 433 (478)
T Consensus 363 ~~i~~l~Gl~~~~P~~~~~~~i~~lsl~GiPp~~GF~~K~~i~~~~~~~~~~~l~~~~~~~s~l~~~y~~~~~~~~~fg~ 442 (491)
T PRK06458 363 QDINVIRGLLKVMPFTGWGLMLGVLAIAGMPPFGVFISEFLILTAGLARGHPWLAILLLLLLTLAFAALVRRVTGMVFGE 442 (491)
T ss_pred EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 06998719798839999999999999998879978999999999999818799999999999999999999999984189
Q ss_pred CCCCCCC--CCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC
Q ss_conf 8778655--6733218999999999999999-767658999998751
Q gi|254780867|r 434 STECVVV--VAKEMRLFIFGSILFVTGYFLI-ENILNSSIMKIVMSL 477 (478)
Q Consensus 434 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l 477 (478)
T Consensus 443 ~~~~~~~~~~~~~~~~~~~il~~~~i~~Gl~~p~pl~~~~~~~a~~~ 489 (491)
T PRK06458 443 PPQAVNRGDLGWLTLLPMFIHLVLMLVLGLYLPPPLVRWLQHAATIV 489 (491)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99766889997879999999999999999727489999999999984