HHsearch alignment for GI: 254780867 and conserved domain: PRK08377

>PRK08377 NADH dehydrogenase subunit N; Validated.
Probab=100.00  E-value=0  Score=610.46  Aligned_cols=455  Identities=25%  Similarity=0.387  Sum_probs=376.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH--HCCCC---------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999864023015899999999999999999997--13221---------003167641007999999999
Q gi|254780867|r   16 EIIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLI--MPYEG---------IGLGGAYISDRFSYFIKAILL   84 (478)
Q Consensus        16 ~i~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~i~l~~~~~--~~~~~---------~~~~~~~~~D~~s~~~~~l~~   84 (478)
T Consensus         9 I~lPli~A~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~W~~~~gi~~~~d~ls~~~~ll~~   88 (493)
T PRK08377          9 IALPLISAFFVPVLKGIGKSLIMPYLVLITLLQTGIAGWVFYEVYTTGKPIIIMAGGWKPPVGINLYIGHFAALFVLIIA   88 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECCHHHHHHHHHH
T ss_conf             99999999999998633068999999999999999999999998158981799831757863707788855489999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf             99999999999996321002242066799999999998731461022124577788777766532000134455555401
Q gi|254780867|r   85 MSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFV  164 (478)
Q Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~  164 (478)
T Consensus        89 ~v~~~~~~ys~~~~~--~~~~~~~~~l~ll~~~g~~g~~~s~Dl~~lfvf~E~~~i~sy~Li~~~~~-~~~~~Aa~ky~i  165 (493)
T PRK08377         89 VVSFFTALFSFRAVK--VEPIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKT-GEAAEASMKYIV  165 (493)
T ss_pred             HHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_conf             999999999998843--68624099999999999999999816999999999999999999998798-899999999999


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             46204679988988530010000012222111013431000012222112344444321100012101221001233332
Q gi|254780867|r  165 LGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFL  244 (478)
Q Consensus       165 ~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~sall  244 (478)
T Consensus       166 ~~~~gs~~~L~gi~lly~~~Gt~~~~~l~~~~~~~-~~~~~~~~~~l~~~gf~~K~~~fPfH~WlPday~~apt~vsall  244 (493)
T PRK08377        166 LGGIGSSFFLIGVALIYGATGTLNMAHLAQLAAAI-DPTVAQVGLALIIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF  244 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHH
T ss_conf             99999999999999999980897599999986245-73899999999999999885706107774454446898607888


Q ss_pred             CCCEECCCCCCCCCCCCCCCCCC--CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHH
Q ss_conf             10000023211111244000112--221000001222102222000001244544356421112442111111215-778
Q gi|254780867|r  245 ATIPKFATTMALCRITSVFWPML--SGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGM-LGI  321 (478)
Q Consensus       245 s~~~~~~~~~~l~r~~~~~~~~~--~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~~-~~~  321 (478)
T Consensus       245 s~~~~k~g~y~l~R~~~~~~~~~~~~~~~~~l~~l~~~t~~~G~~~Al~Q~dlKrllAYSsIsq~G~i~lgi~~~~~~g~  324 (493)
T PRK08377        245 SAFVVKAGLYAMARILYLLQKVNGWSSVLKLLIIMATLTVVFAELSALRQKDVKRMIAYSSIGQVGLIALAFSLGTQAGV  324 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             89999999999999999732301269999999999999999999999985055099999899999999999995779899


Q ss_pred             HHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             88864300232010011000026787408764550210466523211478999986530366500006759999999996
Q gi|254780867|r  322 VAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVK  401 (478)
Q Consensus       322 ~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~  401 (478)
T Consensus       325 ~~a~~~l~~h~~~k~~lFl~~g~i~~~~g--~~~l~~l~GL~~~~P~~a~~~~i~~lsl~GiPp~~GF~~K~~i~~aa~~  402 (493)
T PRK08377        325 DAGVFHMLNHAIVKAMMFLAVGYVGITLG--GTEIENFQGLGKRMPLTALALTIGAVATVGVPLFNVFWSKFRIILATLQ  402 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999838--8759996597866289999999999999988776469999999999998


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             28499999999999999999999999996499877865567332189999999999999997676589999987519
Q gi|254780867|r  402 REFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKEMRLFIFGSILFVTGYFLIENILNSSIMKIVMSLF  478 (478)
Q Consensus       402 ~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  478 (478)
T Consensus       403 ~~~~~~~~~~~i~svis~~Y~lr~i~~~ff~~~~~~~~~~--~~~~~~~~l~~~~i~lGi~P~p~~~~~~~aa~~l~  477 (493)
T PRK08377        403 AGYTWPAALVLFASVVEAVYYFRLIHTMWFEGEGERIKEG--WIGVFLLLLAALIVVIGVYPTPVWEIVKKAGSDIF  477 (493)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             3969999999999999999999999999428887555400--28999999999999999637989999999999870