HHsearch alignment for GI: 254780867 and conserved domain: PRK08667
>PRK08667 hydrogenase membrane subunit; Validated.
Probab=100.00 E-value=0 Score=587.32 Aligned_cols=458 Identities=19% Similarity=0.275 Sum_probs=365.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHHHH
Q ss_conf 86299999999999999999998640230158999999999999999999971---------322100316764100799
Q gi|254780867|r 7 INDLRLCIPEIIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLIM---------PYEGIGLGGAYISDRFSY 77 (478)
Q Consensus 7 ~~~l~lllP~i~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~i~l~~~~~~---------~~~~~~~~~~~~~D~~s~ 77 (478)
T Consensus 2 m~~l-~l~~i~lpl~ga~l~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vD~LS~ 80 (644)
T PRK08667 2 LAGL-FLGAILLLLAAAVIPLVFRHKNIRVWQSSLLLLIASALLLLFALLVLFTGNPLDIPLWGIAPGLDITFHIDRLAA 80 (644)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEECHHHH
T ss_conf 5789-999999999999999982587510699999999999999999999995489838986420699628988556689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 999999999999999999996321002--242066799999999998731461022124577788777766532000134
Q gi|254780867|r 78 FIKAILLMSSIIIFIKMFSCIYVKPFS--CFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFS 155 (478)
Q Consensus 78 ~~~~l~~~~~l~~~~~~~~~~~~~~~~--~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~ 155 (478)
T Consensus 81 ~fl~lv~~v~~~v~lYs~~Y~~~~~~~~r~~~~~~~~~Lf~~sm~~vv~a~dl~~~~vfwE~m~l~sy~LI~~~~~~~~~ 160 (644)
T PRK08667 81 FFIILIGLVSLCVAIYSLGYNEHMKSNERANLLSALTALFILSMLLVVASANTISFLVFWEIMALSSFFLVMNDYQEEET 160 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999999999996288662768631419999999999999999998379999999999999999998400998999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 45555540146204679988988530010000012222111013431000012222112344444321100012101221
Q gi|254780867|r 156 IEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEG 235 (478)
Q Consensus 156 ~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ 235 (478)
T Consensus 161 ~~Aa~ky~i~~~~G~~~ll~g~~~l~~~~Gs~~~~~~~~~~~------~~~l~~~llliGf~~Kag~~P~H~WLP~A~~~ 234 (644)
T PRK08667 161 QRAGFFYFVMTQLSTVFLMLGIILLFIQTGSFELSPLGAPSG------SLPLVFLLLFLGFGIKAGIIPFHKWLPYAHPA 234 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC
T ss_conf 999999999999999999999999999976188999886421------48999999999999988050269760666678
Q ss_pred HCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00123333210000023211111244000112221000001222102222000001244544356421112442111111
Q gi|254780867|r 236 SPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFS 315 (478)
Q Consensus 236 ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~ 315 (478)
T Consensus 235 APtpVSALlsgvmvk~gvy~liR~~~~~~~~~~~~~~~ll~lG~iT~l~G~l~Al~Q~DiKrlLAYSSisqiG~i~lglG 314 (644)
T PRK08667 235 SPSPVSALMSGVMLKVAVYGLIRFLMDVLAPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIG 314 (644)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98089999999999999999999999851405899999999999999999999997621899999999999999999998
Q ss_pred CH------------HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 21------------577888864300232010011000026787408764550210466523211478999986530366
Q gi|254780867|r 316 TG------------MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGI 383 (478)
Q Consensus 316 ~~------------~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~Gl 383 (478)
T Consensus 315 ~~~~~~~~g~~~l~~la~~~al~hl~nHa~fKalLFl~aG~v~~~tg--t~~i~~lgGL~k~mP~t~~~f~ig~lai~Gl 392 (644)
T PRK08667 315 LYVIFGVYGLDTLALLALGGALFHSLNHALFKSLLFLTAGSVVHATG--TRNIEKMGGLVKRMPYTSALFLVGAVSIAAL 392 (644)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CEEHHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 74310113511567889999999999999999999999879999718--7029996894432189999999999998737
Q ss_pred CHHHHHHHHHHHHHHHHHCCH---HH-------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 500006759999999996284---99-------99999999999999999999999649987786556733218999999
Q gi|254780867|r 384 PPFAGFFGKYFLLISAVKREF---YV-------LAIVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKEMRLFIFGSI 453 (478)
Q Consensus 384 Pp~~GF~sK~~i~~~~~~~~~---~~-------~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 453 (478)
T Consensus 393 PP~~GF~Sk~li~~~~~~~~~~~~~~~~~~~~~~~~~lal~~~la~~~~~k~~g~~Flg~pr~~~~~~a~e~~~~m~~~~ 472 (644)
T PRK08667 393 PPFNGFASELLLYESFFQSFSVADPLIKILLFVVLALFALTSALAAACFVKAFGITFLAMPRSQEARSAREVSKPMLIGP 472 (644)
T ss_pred CHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 20047999999999998545654237999999999999999999999999999986138889854346677981278999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999976765899999
Q gi|254780867|r 454 LFVTGYFLIENILNSSIMKI 473 (478)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~ 473 (478)
T Consensus 473 ~~la~~~~~~g~~~~~~~~~ 492 (644)
T PRK08667 473 AVLAVACLVLGLFSVQIFSL 492 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999646889986