HHsearch alignment for GI: 254780867 and conserved domain: PRK08668
>PRK08668 NADH dehydrogenase subunit M; Validated.
Probab=100.00 E-value=0 Score=613.60 Aligned_cols=406 Identities=23% Similarity=0.370 Sum_probs=351.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 03167641007999999999999999999999963210022420667999999999987314610221245777887777
Q gi|254780867|r 65 GLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYV 144 (478)
Q Consensus 65 ~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~ 144 (478)
T Consensus 62 ~~~i~f~lD~ls~~f~lli~~v~~lv~lys~~Ym~~~~~~-~~f~~~lll~~~~mlgvv~s~dl~~lfvfwEl~~l~syl 140 (616)
T PRK08668 62 GFELQLKLTHLGWYFAIISLLVGLSVSFFMVEWLEKQKNP-AAFNMFALMSLTGVLGVFFANDLITLFIFWEIAVLGSFM 140 (616)
T ss_pred CCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7127886456679999999999999999999984279981-099999999999999999993899999999999999999
Q ss_pred HHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66532000134455555401462046799889885300100000122221110134310000122221123444443211
Q gi|254780867|r 145 LIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVP 224 (478)
Q Consensus 145 LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fP 224 (478)
T Consensus 141 LI~~~~--~~a~~Aa~kyfi~~~vG~~~~L~gi~lly~~~Gt~~~~~i~~~l~~~~~~~~~~~~~l~l~~~~~~Ksa~fP 218 (616)
T PRK08668 141 IVPMGK--KESRKASLKYFVLSAIGAYAMLFAIFLIYAKYGTFSFDEISQALLNDASLGFKLIVVLFLSAAGIAKSGIFP 218 (616)
T ss_pred HHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 777298--389999999999999999999999999999978634999999985175417999999999999999846287
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCC-----------CCCCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf 000121012210012333321000002321111124400011-----------222100000122210222200000124
Q gi|254780867|r 225 FHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPM-----------LSGLLPIFMCVSIGSMVLGSVVAIRQK 293 (478)
Q Consensus 225 fH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~-----------~~~~~~~l~~~g~~t~i~g~~~al~q~ 293 (478)
T Consensus 219 fH~WLPdA~~~aP~~vSallsg~mvk~Gvy~lir~~~l~~~~~~~~~~~~~~~~~~~~~ii~~lg~iT~i~gal~Al~Q~ 298 (616)
T PRK08668 219 LHTWLPDAYGEAPQSFTAVFSGQLSKMGVYGFLLVYAVIPTGKLFSEFGTYHGVPLFNYIIIWLGNISIIVGTLMAILQE 298 (616)
T ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76876252067978999999999999999999999999721276665422003257999999999999999999999860
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHH
Q ss_conf 4544356421112442111111215-778888643002320100110000267874087645502104665232114789
Q gi|254780867|r 294 DLKRLMAYSSIGHAGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCA 372 (478)
Q Consensus 294 d~KrllAySsi~q~G~i~~~l~~~~-~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~ 372 (478)
T Consensus 299 DiKrlLAYSSisq~Gyillgig~g~~~g~~galfhli~Ha~~Ka~LFL~aG~v~~~~g--t~di~~lgGL~k~mP~t~~~ 376 (616)
T PRK08668 299 DMKKLIAYSSIANGGYILIGLGTGDSLGFAGGLFHVFNHALAKGLFFLSFAAVIYRTG--TTKIKEMGGLIEKMPVTFAM 376 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CEEHHHHCCCCCCCHHHHHH
T ss_conf 1899999999999999999998665999999999999999999999999999999738--66399858912005899999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH---HHH
Q ss_conf 99986530366500006759999999996284999999999999999999999999964998778655673321---899
Q gi|254780867|r 373 LTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKEMR---LFI 449 (478)
Q Consensus 373 ~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~~~~~~~---~~~ 449 (478)
T Consensus 377 ~~i~~lsl~GiPp~~GF~SK~~i~~a~~~~~~~~~~~~~~~~~~~t~~y~~r~~~~~F~G~~~~~~~~~~E~p~~M~ipm 456 (616)
T PRK08668 377 YLVAIISLAGIPPMSGFASKWLIFEALISKGMFITAFMVFFGSIGSFLYVFRPLAGVFLGQLPSKHEDVKEAPLPMLIPM 456 (616)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99999998736030489999999999998587699999999999999999999999957999743488999967688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999997676589999987
Q gi|254780867|r 450 FGSILFVTGYFLIENILNSSIMKIVM 475 (478)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (478)
T Consensus 457 ~iLa~~~v~~G~~P~~~~~~~~~~~~ 482 (616)
T PRK08668 457 LILVLLTVVFGVAPGPVLQEINKIFG 482 (616)
T ss_pred HHHHHHHHHHEECCHHHHHHHHHHHH
T ss_conf 99999999821077166899999874