HHsearch alignment for GI: 254780867 and conserved domain: PRK12561
>PRK12561 NAD(P)H-quinone oxidoreductase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=558.77 Aligned_cols=402 Identities=17% Similarity=0.254 Sum_probs=337.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 31676410079999999999999999999999632100224206679999999999873146102212457778877776
Q gi|254780867|r 66 LGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVL 145 (478)
Q Consensus 66 ~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~L 145 (478)
T Consensus 51 i~~~lgvDglSl~~vlLt~~l~~l~i~~s---~~~-~~~~~~f~~l~Ll~~~~mlGvf~s~Dll~fyvfwE~~lipsy~L 126 (495)
T PRK12561 51 LEWSLGVDGLSAPLVLLSGLVTTLSIAAS---WKV-TRKPRLFFFLLLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLL 126 (495)
T ss_pred CEEEEEEHHHHHHHHHHHHHHHHHHHHHH---CCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86999623645999999999999999852---233-67631899999999999999999836999999999999999896
Q ss_pred HHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6532000134455555401462046799889885300100--00012222111013431000012222112344444321
Q gi|254780867|r 146 IAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTG--CTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALV 223 (478)
Q Consensus 146 I~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~g--s~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~f 223 (478)
T Consensus 127 I~~wg~~-~r~~Aa~k~~l~t~~Gs~~~L~~~~~l~~~~g~~t~~~~~l~~~~---~~~~~~~~~~~~~li~f~iK~~~f 202 (495)
T PRK12561 127 ISIWGGQ-KRLYAATKFILYTALASLFILIAGLALALSGDTFTFDLTELGAKS---YPLALELLAYAGFLIAFGVKLPIF 202 (495)
T ss_pred HHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 5617987-999999999999999999999999999998565069999998646---335899999999999999862003
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCC-CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1000121012210012333321000002321111124400011-222100000122210222200000124454435642
Q gi|254780867|r 224 PFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPM-LSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYS 302 (478)
Q Consensus 224 PfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~-~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAyS 302 (478)
T Consensus 203 PfH~WLPdA~~eAPt~vS~lLagvl~K~G~YgliR~~~~l~p~~~~~~~~~l~~lg~itii~gal~Al~Q~DlKrllAYS 282 (495)
T PRK12561 203 PLHTWLPDAHGEASAPVSMLLAGVLLKMGGYALIRFNVQMLPDAHIYFAPALIILGIVNIIYGALNAFAQDNVKRRLAYS 282 (495)
T ss_pred CCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 46111156667799437788899999987423355444305326888889999999999999999999985687899893
Q ss_pred CCCCCCCCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 111244211111121-5778888643002320100110000267874087645502104665232114789999865303
Q gi|254780867|r 303 SIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLA 381 (478)
Q Consensus 303 si~q~G~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~ 381 (478)
T Consensus 283 SIShmG~i~lGi~~~~~~g~~Gai~~mi~Hgl~ka~LFl~aG~i~~r~~--tr~i~~lgGL~~~mP~~~~~f~i~~la~~ 360 (495)
T PRK12561 283 SVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTH--TLSIPNMGGLAKVMPKTFALFTASSLASL 360 (495)
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CEEHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 6989999999988758999998999999999999999999738998449--56699968965431899999999999997
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CCCCCCCHHHH
Q ss_conf 665000067599999999962849------999999999999999999999999649987786------55673321899
Q gi|254780867|r 382 GIPPFAGFFGKYFLLISAVKREFY------VLAIVALLSSVISAYYYLRVISIMWFDQSTECV------VVVAKEMRLFI 449 (478)
Q Consensus 382 GlPp~~GF~sK~~i~~~~~~~~~~------~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~------~~~~~~~~~~~ 449 (478)
T Consensus 361 GlP~~~GF~se~lIl~G~~~~~~~~~~~~~~~~~~a~~g~ilta~Y~l~~~~rvf~G~~~~~~~~~~~~~dl~~rE~~~~ 440 (495)
T PRK12561 361 ALPGMSGFVSELTVFLGITSSDVYSSTFRTITILLAAVGLILTPIYLLSMLRRVFYGPRSELIPALAVVEDAKPRELFIA 440 (495)
T ss_pred HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 40220609999999999986053113689999999999999999999999999713899766654445878878799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999767658999998751
Q gi|254780867|r 450 FGSILFVTGYFLIENILNSSIMKIVMSL 477 (478)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l 477 (478)
T Consensus 441 ~~l~~~~~~~G~yP~~~l~~~~~s~~~l 468 (495)
T PRK12561 441 LSLLVPILGIGFYPKLATQLYDVKTVAL 468 (495)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999999748899996647889999