>TIGR01972 NDH_I_M proton-translocating NADH-quinone oxidoreductase, chain M; InterPro: IPR010227 This entry describes the 13th (based on Escherichia coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport.

Probab=100.00 E-value=0 Score=590.20 Aligned_cols=453 Identities=23% Similarity=0.340 Sum_probs=371.6 Q ss_pred HHHHHHHHHHHHHHHCCCCHHH-----HHH-HHHHH--HHHHHHHHHH-HHHCCC--CH----------H-H--HHHHHH Q ss_conf 9999999999998640230158-----999-99999--9999999999-971322--10----------0-3--167641 Q gi|254780867|r 17 IIIAFGILFLLLMGVFSRRKNA-----FHL-VVFPV--CLLSIALFFL-LIMPYE--GI----------G-L--GGAYIS 72 (478) Q Consensus 17 i~l~~~~l~~l~~~~~~~~~~~-----~~~-~~~~~--~~l~i~l~~~-~~~~~~--~~----------~-~--~~~~~~ 72 (478) T Consensus 6 flPligal~~l~~~~~~~~~~~~~~~~r~~Al~~~~~~l~l~~~l~~~~fD~~~~~~~fQ~~e~~~Wip~~lG~~Y~lGV 85 (532) T TIGR01972 6 FLPLIGALLILLLPRQNNKGKAREQAVRWIALVVALATLLLSLLLLFQEFDPTNSGPGFQFTESLPWIPADLGISYHLGV 85 (532) T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEH T ss_conf 89999999999834567760258999999999999999999999986043345664440157731122345570464203 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHC--CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0079999999999999999999999632--100--224206679999999999873146102212457778877776653 Q gi|254780867|r 73 DRFSYFIKAILLMSSIIIFIKMFSCIYV--KPF--SCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAM 148 (478) Q Consensus 73 D~~s~~~~~l~~~~~l~~~~~~~~~~~~--~~~--~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~ 148 (478) T Consensus 86 DGiSl~l~~LtaL---lt~l~~~~~w~~R~i~k~g~~k~f~~~~L~le~~~~G~F~A~D~~LFY~FwE~~LiPmyllIg~ 162 (532) T TIGR01972 86 DGISLLLVLLTAL---LTLLSILASWESREIQKEGRVKEFYALLLLLEAGVIGVFLALDLLLFYVFWEAMLIPMYLLIGV 162 (532) T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 2799999999999---9999999865440104788579999999999999999999998999999999999889999864 Q ss_pred HH-----CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC------CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 20-----00134455555401462046799889885300100------00012222111013431000012222112344 Q gi|254780867|r 149 NR-----KSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTG------CTGFSQIATSLFIGHRSFVLIVGVVLILVGLF 217 (478) Q Consensus 149 ~~-----~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~g------s~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~ 217 (478) T Consensus 163 WGdka~~g~-~R~yAA~KFfLYTl~GSvlML~a~l~l~~~~g~~~~~~tF~l~~l~~~~~~~~-~~~q~~Lf~aFf~aFA 240 (532) T TIGR01972 163 WGDKAEAGP-NRIYAAMKFFLYTLAGSVLMLLAILGLYFLGGTQLLILTFDLAELLNQPVNLP-LSVQTWLFLAFFIAFA 240 (532) T ss_pred HCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCH-HHHHHHHHHHHHHHHH T ss_conf 110013646-52378899999999999999999999999823411121034288740213641-9999999999999855 Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCCCCC Q ss_conf 444321100012101221001233332100000232111112440001-1222100000122210222200000124454 Q gi|254780867|r 218 FKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWP-MLSGLLPIFMCVSIGSMVLGSVVAIRQKDLK 296 (478) Q Consensus 218 ~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~-~~~~~~~~l~~~g~~t~i~g~~~al~q~d~K 296 (478) T Consensus 241 vK~PlfPlHTWLPDAH~~Apt~gSV~LaGvLlK~G~YGflRf~LpLfPdas~~f~p~~~~L~~~~IiYgal~A~aQ~D~K 320 (532) T TIGR01972 241 VKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVLAALAVIAIIYGALIALAQTDIK 320 (532) T ss_pred HCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 22477665334320310277468999999999888899999876544999999999999999999999999999986288 Q ss_pred CCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCC----CCCHHHH Q ss_conf 4356421112442111111-2157788886430023201001100002678740876455021046652----3211478 Q gi|254780867|r 297 RLMAYSSIGHAGYALIGFS-TGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSR----QDIFLTC 371 (478) Q Consensus 297 rllAySsi~q~G~i~~~l~-~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~----~~P~~~~ 371 (478) T Consensus 321 rLiAYSSiSHMGfV~LGifs~n~~G~~GA~~qM~~HGl~~a~LFl~vG~ly~R~h--Tr~i~~~GGl~~hp~~~mP~~~~ 398 (532) T TIGR01972 321 RLIAYSSISHMGFVLLGIFSFNELGISGAVLQMISHGLITAALFLLVGVLYDRAH--TRDIAKYGGLANHPYRKMPVLAA 398 (532) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHCCHHHHHHHHHHHHHH T ss_conf 9999863579999999999761889999999999866999999999999986324--33378625134302111147999 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------- Q ss_conf 999986530366500006759999999996-------28499999999999999999999999996499----------- Q gi|254780867|r 372 ALTIFLFSLAGIPPFAGFFGKYFLLISAVK-------REFYVLAIVALLSSVISAYYYLRVISIMWFDQ----------- 433 (478) Q Consensus 372 ~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~-------~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~----------- 433 (478) T Consensus 399 f~~~~~~As~GlPGt~GFvGEFl~l~G~f~~~~~S~P~-~~~~~~~A~~G~vl~A~Y~L~~~~r~~fG~~~P~~~~~~~~ 477 (532) T TIGR01972 399 FFMLFAMASLGLPGTSGFVGEFLILLGAFKSDILSFPV-NPVVAFLAALGIVLTAAYMLWLYKRVFFGERKPDSLYLQDK 477 (532) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 99999997332000034999999998541677667551-89999999999999999999999998517987853121022 Q ss_pred CCC---C----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 877---8----6556733218999999999999999767658999998751 Q gi|254780867|r 434 STE---C----VVVVAKEMRLFIFGSILFVTGYFLIENILNSSIMKIVMSL 477 (478) Q Consensus 434 ~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 477 (478) T Consensus 478 ~~~~~~~~~~~~~Dl~~rE~~~~~~lv~~~~~lGlyP~~~l~~~~~~v~~l 528 (532) T TIGR01972 478 ISNISDPEVAEFPDLNGREIAVLAPLVVLILFLGLYPKPLLDLIEPSVNNL 528 (532) T ss_pred CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 002543134323675088999999999999999724568875578899999

HHsearch alignment for GI: 254780867 and conserved domain: TIGR01972