HHsearch alignment for GI: 254780867 and conserved domain: pfam00361
>pfam00361 Oxidored_q1 NADH-Ubiquinone/plastoquinone (complex I), various chains. This family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.
Probab=100.00 E-value=0 Score=452.89 Aligned_cols=268 Identities=34% Similarity=0.566 Sum_probs=246.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 14610221245777887777665320001344555554014620467998898853001000001222211101343100
Q gi|254780867|r 125 ANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFV 204 (478)
Q Consensus 125 s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~ 204 (478)
T Consensus 1 s~dl~~~~v~~El~~l~~y~Li~~~~~~~~~~~Aa~ky~i~~~~~s~~lL~gi~~ly~~~gt~~~~~~~~~~~---~~~~ 77 (270)
T pfam00361 1 SNNLLLFYLGWELLGLPSYLLIGFWGYSPRSLEASLKYFLYTALGSLFLLFGILYIYGLTGSLSFTLLFLFGL---NSNG 77 (270)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC---CCHH
T ss_conf 9749999999999999999998834999999999999999999999999999999999862226999986435---6348
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC
Q ss_conf 00122221123444443211000121012210012333321000002321111124400011222100000122210222
Q gi|254780867|r 205 LIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVL 284 (478)
Q Consensus 205 ~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~ 284 (478)
T Consensus 78 ~~~~~~l~~~g~~~K~~~~PfH~Wlpday~~ap~~~s~~ls~v~~~~g~~~l~r~~~~~~~-~~~~~~~l~~~~~~s~i~ 156 (270)
T pfam00361 78 LLLLSLLLLVAFLVKSPQFPFHFWLPDAHEGPPPVSSLILATTLKKAGLYLLLRLSNLFSS-SNLISYILLILGILSMLL 156 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999486247557788579987899999989999999999999986132-378999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCC
Q ss_conf 200000124454435642111244211111121-5778888643002320100110000267874087645502104665
Q gi|254780867|r 285 GSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLS 363 (478)
Q Consensus 285 g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~ 363 (478)
T Consensus 157 g~~~Al~Q~dlKrllAYSSis~~G~il~~~~~~~~~~~~~~~~~~i~h~~~k~~lF~~~g~i~~~~~--~~~i~~l~Gl~ 234 (270)
T pfam00361 157 GSLGALNQTDLKKLIAYSSISHMGFVMMGILSLGSYGIIGAIIHLISHGFFSALLFLLAGLIIHRSG--TRDLRNYGGLF 234 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHCCHH
T ss_conf 9999983302779999999999999999999865779999999999999999999999999998758--87099870969
Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 23211478999986530366500006759999999
Q gi|254780867|r 364 RQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLIS 398 (478)
Q Consensus 364 ~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~ 398 (478)
T Consensus 235 ~~~P~~~~~~~i~~lsl~GiPp~~GF~~K~~i~~s 269 (270)
T pfam00361 235 NSMPILALLLLLLLLSLMGLPPLLGFISKFLILES 269 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 88299999999999999877576038899999864