HHsearch alignment for GI: 254780867 and conserved domain: pfam10125
>pfam10125 NADHdeh_related NADH dehydrogenase I, subunit N related protein. This family comprises a set of NADH dehydrogenase I, subunit N related proteins found in archaea. Their exact function, has not, as yet, been determined.
Probab=96.77 E-value=0.00068 Score=38.44 Aligned_cols=113 Identities=18% Similarity=0.288 Sum_probs=90.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 99999998731461022124577788777766532000134455555401462046799889885300100000122221
Q gi|254780867|r 115 AVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIAT 194 (478)
Q Consensus 115 ~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~ 194 (478)
T Consensus 78 CGiAtagam~TgDlFnFtLFlaliGI~NIGIVsaV-k~~~VLnaAf~YGliamiaslPLFGgAaliLa~tGTLSi~EL~~ 156 (219)
T pfam10125 78 CGLATAGAMVTGDLFNFTLFLALIGISNIGIVSAV-KNEWVLNAAFNYGLIAMIATLPLFGGAALILAKTGTLSIWELSK 156 (219)
T ss_pred HHHHHHCCEEECCHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEHHHHHC
T ss_conf 88865130001306779999999761122102104-17899987875538999864643315787765467404998852
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 110134310000122221123444443211000121012
Q gi|254780867|r 195 SLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVY 233 (478)
Q Consensus 195 ~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~ 233 (478)
T Consensus 157 ~~~----~-~l~~~k~l~~~Gv~GE~GvAPFYaaKAEmf 190 (219)
T pfam10125 157 MAG----D-VLLYAKILLAAGVIGETGVAPFYAAKAEMF 190 (219)
T ss_pred CCC----C-HHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 884----2-389999999977505467551577678885