RPSBLAST alignment for GI: 254780867 and conserved domain: TIGR01770
>gnl|CDD|162524 TIGR01770, NDH_I_N, proton-translocating NADH-quinone oxidoreductase, chain N. NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. Length = 468
Score = 302 bits (776), Expect = 1e-82
Identities = 185/427 (43%), Positives = 267/427 (62%), Gaps = 8/427 (1%)
Query: 14 IPEIIIAFGILFLLLMGVFSRRKNAFH-LVVFPVCLLSIALFFLLIMPYEG----IGLGG 68
+PEII+ G LLL G+F RK L+ ++ ++L L + +
Sbjct: 5 LPEIILLLGAFILLLYGLFYSRKKRNPLLLKNLFYIVLLSLLVSLFLTLQYASYLFTGFS 64
Query: 69 AYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDM 128
+I D FS IK ILL+S++++F S + + FEF +++L A+LG+ ++S+ND+
Sbjct: 65 FFIVDNFSLIIKLILLLSTLLLFFFALSYFSKEKINKFEFYILLLFALLGIFLLVSSNDL 124
Query: 129 ISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTG 188
+S Y+ LELQS YVL A+ RKS FS EA LKYF+LGAFSS LL+GIS IYGFTG
Sbjct: 125 LSIYLGLELQSLCFYVLAALKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184
Query: 189 FSQIATSLFIGHRSF-VLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATI 247
F + L +L++G+V ILVGL FK++ VPFHMW+PDVYEG+P +TAF + +
Sbjct: 185 FEDLLLFLSNLGNDISLLLLGIVFILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIV 244
Query: 248 PKFATTMALCRIT-SVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGH 306
PK A L R+ + + + ++ SM++G+ A+ QK +KRL+AYSSI H
Sbjct: 245 PKIAIFAVLLRLFGYILFAFSPIWQIFLLICAVLSMLIGNFGALAQKKVKRLLAYSSISH 304
Query: 307 AGYALIGFSTGML-GIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQ 365
GY LIG G L GI A++ Y+ IY +M IG F + LR + I+ ISD AGL +
Sbjct: 305 VGYILIGLLAGTLEGIKAVLFYIFIYALMSIGAFGVLALLRSRKDEWIEYISDFAGLFKT 364
Query: 366 DIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRV 425
+ + + IF+FSLAGIPP AGFFGK+++ + +K Y+LA++A+L+SVISA+YYLRV
Sbjct: 365 NPLIAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYLLAVIAILTSVISAFYYLRV 424
Query: 426 ISIMWFD 432
+ +M+FD
Sbjct: 425 VKVMYFD 431