RPSBLAST alignment for GI: 254780867 and conserved domain: TIGR01770

>gnl|CDD|162524 TIGR01770, NDH_I_N, proton-translocating NADH-quinone oxidoreductase, chain N. NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. Length = 468
 Score =  302 bits (776), Expect = 1e-82
 Identities = 185/427 (43%), Positives = 267/427 (62%), Gaps = 8/427 (1%)

Query: 14  IPEIIIAFGILFLLLMGVFSRRKNAFH-LVVFPVCLLSIALFFLLIMPYEG----IGLGG 68
           +PEII+  G   LLL G+F  RK     L+     ++ ++L   L +  +          
Sbjct: 5   LPEIILLLGAFILLLYGLFYSRKKRNPLLLKNLFYIVLLSLLVSLFLTLQYASYLFTGFS 64

Query: 69  AYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDM 128
            +I D FS  IK ILL+S++++F    S    +  + FEF +++L A+LG+  ++S+ND+
Sbjct: 65  FFIVDNFSLIIKLILLLSTLLLFFFALSYFSKEKINKFEFYILLLFALLGIFLLVSSNDL 124

Query: 129 ISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTG 188
           +S Y+ LELQS   YVL A+ RKS FS EA LKYF+LGAFSS  LL+GIS IYGFTG   
Sbjct: 125 LSIYLGLELQSLCFYVLAALKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184

Query: 189 FSQIATSLFIGHRSF-VLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATI 247
           F  +   L        +L++G+V ILVGL FK++ VPFHMW+PDVYEG+P  +TAF + +
Sbjct: 185 FEDLLLFLSNLGNDISLLLLGIVFILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIV 244

Query: 248 PKFATTMALCRIT-SVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGH 306
           PK A    L R+   + +          +  ++ SM++G+  A+ QK +KRL+AYSSI H
Sbjct: 245 PKIAIFAVLLRLFGYILFAFSPIWQIFLLICAVLSMLIGNFGALAQKKVKRLLAYSSISH 304

Query: 307 AGYALIGFSTGML-GIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQ 365
            GY LIG   G L GI A++ Y+ IY +M IG F  +  LR +    I+ ISD AGL + 
Sbjct: 305 VGYILIGLLAGTLEGIKAVLFYIFIYALMSIGAFGVLALLRSRKDEWIEYISDFAGLFKT 364

Query: 366 DIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRV 425
           +  +   + IF+FSLAGIPP AGFFGK+++  + +K   Y+LA++A+L+SVISA+YYLRV
Sbjct: 365 NPLIAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYLLAVIAILTSVISAFYYLRV 424

Query: 426 ISIMWFD 432
           + +M+FD
Sbjct: 425 VKVMYFD 431