RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780867|ref|YP_003065280.1| NADH dehydrogenase subunit N
[Candidatus Liberibacter asiaticus str. psy62]
(478 letters)
>gnl|CDD|180252 PRK05777, PRK05777, NADH:ubiquinone oxidoreductase subunit N;
Provisional.
Length = 476
Score = 393 bits (1011), Expect = e-110
Identities = 189/438 (43%), Positives = 279/438 (63%), Gaps = 7/438 (1%)
Query: 9 DLRLCIPEIIIAFGILFLLLMGVFSRRKNAF-HLVVFPVCLLSIALFFLLIMPYEGIGLG 67
+L L +PE+I+ + LLL+ F RR + L V + L +AL F+L G G
Sbjct: 7 NLILLLPELILLGAAVVLLLIDAFVRRHSRRATLAVLALLLALVALLFVLGAAGGGTAFG 66
Query: 68 GAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISAND 127
G + D F+ F+K ++L++S++ + + Y++ EF +++L A+LGM+ M+SAND
Sbjct: 67 GMLVVDGFALFLKGLILLASLLALL--LARPYLEDRGRGEFYLLVLFALLGMMVMVSAND 124
Query: 128 MISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCT 187
+++ ++ LEL S LY L A+ R S+EAA+KYFVLGA +S FLLYG+S +YG TG
Sbjct: 125 LLTLFLGLELLSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSL 184
Query: 188 GFSQIATSLFIG-HRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLAT 246
F+ IA +L G S +L+ G+V +LVGL FK++ VPFHMW PDVYEG+P +TAFLAT
Sbjct: 185 SFAGIAKALADGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLAT 244
Query: 247 IPKFATTMALCRITSVFWPMLSG-LLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIG 305
PK A L R+ V + LS + ++I SM++G++ A+ Q ++KRL+AYSSI
Sbjct: 245 APKIAAFAVLLRLLVVAFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIA 304
Query: 306 HAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSR 364
HAGY L+G + G G A++ Y++ YL M +G F I LRRK G +ISD AGLS+
Sbjct: 305 HAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAFGVISLLRRKGGEAE-SISDFAGLSK 363
Query: 365 QDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLR 424
+ L +TIF+ SLAGIPP AGF+GK+++ +AV+ + LA++ +L+S I A+YYLR
Sbjct: 364 RSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLR 423
Query: 425 VISIMWFDQSTECVVVVA 442
VI +M+FD+ V
Sbjct: 424 VIKLMYFDEPPRDAPVNW 441
>gnl|CDD|162524 TIGR01770, NDH_I_N, proton-translocating NADH-quinone
oxidoreductase, chain N. NADH-plastoquinone
oxidoreductase is used for the complex and this protein
is designated as subunit 2 or B. This model also
includes a subunit of a related complex in the archaeal
methanogen, Methanosarcina mazei, in which F420H2
replaces NADH and 2-hydroxyphenazine replaces the
quinone.
Length = 468
Score = 302 bits (776), Expect = 1e-82
Identities = 185/427 (43%), Positives = 267/427 (62%), Gaps = 8/427 (1%)
Query: 14 IPEIIIAFGILFLLLMGVFSRRKNAFH-LVVFPVCLLSIALFFLLIMPYEG----IGLGG 68
+PEII+ G LLL G+F RK L+ ++ ++L L + +
Sbjct: 5 LPEIILLLGAFILLLYGLFYSRKKRNPLLLKNLFYIVLLSLLVSLFLTLQYASYLFTGFS 64
Query: 69 AYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDM 128
+I D FS IK ILL+S++++F S + + FEF +++L A+LG+ ++S+ND+
Sbjct: 65 FFIVDNFSLIIKLILLLSTLLLFFFALSYFSKEKINKFEFYILLLFALLGIFLLVSSNDL 124
Query: 129 ISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTG 188
+S Y+ LELQS YVL A+ RKS FS EA LKYF+LGAFSS LL+GIS IYGFTG
Sbjct: 125 LSIYLGLELQSLCFYVLAALKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184
Query: 189 FSQIATSLFIGHRSF-VLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATI 247
F + L +L++G+V ILVGL FK++ VPFHMW+PDVYEG+P +TAF + +
Sbjct: 185 FEDLLLFLSNLGNDISLLLLGIVFILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIV 244
Query: 248 PKFATTMALCRIT-SVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGH 306
PK A L R+ + + + ++ SM++G+ A+ QK +KRL+AYSSI H
Sbjct: 245 PKIAIFAVLLRLFGYILFAFSPIWQIFLLICAVLSMLIGNFGALAQKKVKRLLAYSSISH 304
Query: 307 AGYALIGFSTGML-GIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQ 365
GY LIG G L GI A++ Y+ IY +M IG F + LR + I+ ISD AGL +
Sbjct: 305 VGYILIGLLAGTLEGIKAVLFYIFIYALMSIGAFGVLALLRSRKDEWIEYISDFAGLFKT 364
Query: 366 DIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRV 425
+ + + IF+FSLAGIPP AGFFGK+++ + +K Y+LA++A+L+SVISA+YYLRV
Sbjct: 365 NPLIAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYLLAVIAILTSVISAFYYLRV 424
Query: 426 ISIMWFD 432
+ +M+FD
Sbjct: 425 VKVMYFD 431
>gnl|CDD|179434 PRK02504, PRK02504, NAD(P)H-quinone oxidoreductase subunit 2;
Provisional.
Length = 513
Score = 259 bits (665), Expect = 9e-70
Identities = 163/424 (38%), Positives = 244/424 (57%), Gaps = 14/424 (3%)
Query: 14 IPEIIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLIM---PYEGIGLGGAY 70
+PE I+ +L +LL+ + R + L + L AL L + P I G++
Sbjct: 16 LPEGIVILTLLGVLLVDLIGGRTASRWLPYLAIAGLGAALVALALQWDNPNP-ISFLGSF 74
Query: 71 ISDRFSYFIKAILLMSSIIIFIKMFSCIYVKP--FSCFEFPVIMLMAVLGMLCMISANDM 128
+D S +AI+ +S+++ + S YV+ EF I+L A LG + + A ++
Sbjct: 75 NADNLSIAFRAIIALSTLVTL--LMSWRYVEQSGTPLGEFAAILLTATLGGMFLSGATEL 132
Query: 129 ISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFT-GCT 187
+ ++SLE S A Y+L ++ S EAALKY ++GA SSA LYG S +YG + G T
Sbjct: 133 VMIFISLETLSIASYLLTGYMKRDPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGGST 192
Query: 188 GFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATI 247
S IA +L I S L + +V ++ G+ FK++ VPFH W PDVYEGSP + AFL+
Sbjct: 193 QLSAIALAL-ITSPSLGLALALVFVIAGIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVG 251
Query: 248 PKFAT-TMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGH 306
K A +A+ + + F +F ++I SMVLG+VVA+ Q +KR++AYSSIG
Sbjct: 252 SKAAGFALAIRLLVTAFPSFDEQWKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQ 311
Query: 307 AGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQ 365
AG+ +IG G G +MV Y++ YL M +G F+C++ + G + ISD AGL ++
Sbjct: 312 AGFVMIGLVAGTEAGYASMVFYLLAYLFMNLGAFACVILFSLRTGTD--QISDYAGLYQK 369
Query: 366 DIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRV 425
D LT L++ L SL GIPP AGFFGK +L + + Y+L +V L++SVIS YYY+RV
Sbjct: 370 DPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRV 429
Query: 426 ISIM 429
I +M
Sbjct: 430 IKMM 433
>gnl|CDD|181404 PRK08375, PRK08375, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 487
Score = 165 bits (420), Expect = 2e-41
Identities = 112/449 (24%), Positives = 212/449 (47%), Gaps = 23/449 (5%)
Query: 24 LFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLIMPYEGI---------GLGGAYISDR 74
++L+ R + A L+V + ++ I G+G +D
Sbjct: 18 ALIVLLPKRRRLRWALALLVAALTFALAISLLPQVLDGGVIAYVVGGWPPGIGIELRADS 77
Query: 75 FSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMS 134
S +L+ S + I +++ Y + F + L+ + G+L + D+ + ++
Sbjct: 78 LSALF--LLVTSILAIAALLYAIGYGEHRQTR-FYALFLLLLAGLLGALLTADLFNLFVF 134
Query: 135 LELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIAT 194
LE+ S + Y L+AM ++ AA KY ++G S FLL G+ +YG TG + +A
Sbjct: 135 LEIMSLSSYALVAMGGDRR-ALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAG 193
Query: 195 SLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTM 254
+L + ++ +L+ L K A+ P H W+P Y +P +TA L+ +
Sbjct: 194 AL---AENPTVVTAFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVY 250
Query: 255 ALCRIT-SVF---WPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYA 310
AL RI +VF + GL + +++ SM++GS+ A+ Q D+KR++AYS++ GY
Sbjct: 251 ALIRIYFTVFGGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYI 310
Query: 311 LIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFL 369
L+G + L + A + +++ + +M F ++ G + +S+L+GL R+
Sbjct: 311 LLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYG--TRRLSELSGLGRRMPLT 368
Query: 370 TCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIM 429
A + SL G+PP +GF K++L++ AV+ +++ V L SS+++ Y+LR+
Sbjct: 369 AAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRA 428
Query: 430 WFDQSTECVVVVAKEMRLFIFGSILFVTG 458
+F +E L + L +
Sbjct: 429 FFGPPPPGSEAPKQEAPLGMLAPSLALAL 457
>gnl|CDD|181406 PRK08377, PRK08377, NADH dehydrogenase subunit N; Validated.
Length = 494
Score = 152 bits (385), Expect = 2e-37
Identities = 102/360 (28%), Positives = 180/360 (50%), Gaps = 7/360 (1%)
Query: 82 ILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFA 141
+L+++ + + +FS V+ ++ ++ L+ +LG MI+ D+ + ++ +E+ +
Sbjct: 84 VLIIAIVSFIMSIFSLKAVEVEPIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAIT 143
Query: 142 LYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHR 201
Y L A N K+ + EA++KY VLG S+F L G++ IYG TG + IA L
Sbjct: 144 AYALTAYN-KTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAHIA-QLAGTID 201
Query: 202 SFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITS 261
V VG+ L++ GL + L P + W PD Y+ +P +T + A A+ RI
Sbjct: 202 PTVAQVGLALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILY 261
Query: 262 VFWPM--LSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG-M 318
+ S +L + + ++ ++ + A+RQK++KR++AYSSIG G + + G
Sbjct: 262 LMQNANGWSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQ 321
Query: 319 LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLF 378
G+ A V +M+ + I+ F + + G I GL ++ ALTI
Sbjct: 322 AGVDAGVFHMINHAIVKALLFLAVGYVGITLGGT--EIEKFEGLGKRMPLTALALTIGAL 379
Query: 379 SLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECV 438
S GIP F F+ K+ ++++ + + + L +SV+ A YY R+I MWF E +
Sbjct: 380 STVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRLIHTMWFKGEGERI 439
>gnl|CDD|183667 PRK12667, PRK12667, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 520
Score = 143 bits (364), Expect = 6e-35
Identities = 127/506 (25%), Positives = 220/506 (43%), Gaps = 55/506 (10%)
Query: 14 IPEIIIAFGILFLLLMGVFSRRKNAFH---LVVFPVCLLSIALFFLLIMPYEGI------ 64
P +++ F L LL + + L+V + L+ L F+ +
Sbjct: 9 TPILLVLFAFLLPLLSILLKGNRKIQKIYALLVSLITLILSILLFIQVYSSNKPIVYLFG 68
Query: 65 ----GLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVL-GM 119
+G Y D + LL + ++ I ++S Y++ S E+ +L+ + GM
Sbjct: 69 GWPAPIGIVYEVDLLGALL--GLLTALVMFLILIYSYWYLEHESGPEWYYTLLLGLEAGM 126
Query: 120 LCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISF 179
L ++ D + ++ LE+ S + Y L+A R ++EAA+KY ++GA + ++F
Sbjct: 127 LGILLTGDAFNLFVMLEVLSISAYGLVAYYRDRGDAVEAAIKYALIGAVGTTLYFLALAF 186
Query: 180 IYGFTGC----------TGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWI 229
+Y G G S T G+ L V + L L K A+ P H W+
Sbjct: 187 LYATFGTLNMADLSAKIRGLSFPLTGGLAGNPPLALGVALALALWAFTIKAAIFPNHFWL 246
Query: 230 PDVYEGSPMFMTAFLATIPKFATTMALCRI-------TSVFWPMLSGLLPIFMCVSIGSM 282
PD + +P ++A L+ + A+ R + + L PI + + S
Sbjct: 247 PDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLYTIFGISPSLIDFRAALSPILIILGAVSA 306
Query: 283 VLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGM-LGIVAMVRYMVIY------LIMM 335
++G+++ + QKD+KRL+AYS+I H GY +G G LG+ A + +++ + L +
Sbjct: 307 IIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLA 366
Query: 336 IGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFL 395
G F R +I +LAGL R+ + A I SL GIPP GFF K L
Sbjct: 367 SGVFIHAAGTR--------DIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLL 418
Query: 396 LISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKE-----MRLFIF 450
+ ++ FY+ A+V L++S IS Y R ++F + V KE + + +
Sbjct: 419 FNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEVEHKESPSMSVVILVL 478
Query: 451 GSILFVTGYFL--IENILNSSIMKIV 474
+ + G + IL+S I
Sbjct: 479 ALAVLILGILALFLPEILDSLIEPAA 504
>gnl|CDD|181405 PRK08376, PRK08376, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 521
Score = 132 bits (335), Expect = 1e-31
Identities = 121/421 (28%), Positives = 214/421 (50%), Gaps = 31/421 (7%)
Query: 73 DRFSYFIKAILLMSSIIIFIK-MFSCIYVKPFSCFE-FPVIMLMAVLGMLCMISANDMIS 130
D F F+ L+++I+ F+ ++S Y+K + + + ++L+ LGML M D+ +
Sbjct: 89 DLFGAFM---ALIATIVSFLAVLYSISYMKHDTGLDKYYTLILLLELGMLGMAITGDLFN 145
Query: 131 FYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFS 190
F++ LE+ S A Y L+A + +IEA +KY +G+ +S+ +L GI+ +YG G +
Sbjct: 146 FFVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMA 205
Query: 191 QIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKF 250
+A + + V + + L + GL K VP HMW+PD Y +P ++A L I K
Sbjct: 206 YLAVKMSEN-PTVVAKIALALFIAGLAMKSGAVPVHMWLPDAYPAAPSSISAMLLVI-KQ 263
Query: 251 ATTMALCRIT-SVFWPMLSG-----LLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSI 304
A AL R+ S++ P ++ ++ I C+ +M +G +A+ QKD+KRL+AY S+
Sbjct: 264 AGLYALARVLFSIYGPAINLATVGWVIIILGCL---TMFVGVAMAVVQKDVKRLLAYHSV 320
Query: 305 GHAGYALIGFSTGM--LGIVAMVRY------MVIYLIMMIGFFSCILSLRRK---DGNNI 353
GY L+G G+ LG AM Y IY I+ + +L L
Sbjct: 321 SQIGYMLLGLGVGLAALGDPAMASYGEIALAGGIYHIVNHALYKALLFLTAGAVIYETGT 380
Query: 354 QNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALL 413
+N+++L GL+R T A I ++ G+PPF GF K +L+ + +L ++A++
Sbjct: 381 RNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASK-WLIYESSALFNPILGVIAMI 439
Query: 414 SSVISAYYYLRVISIMWFDQSTECVVVV---AKEMRLFIFGSILFVTGYFLIENILNSSI 470
SV++ +++V +F +E V+ V K M + + + + G L ++ +
Sbjct: 440 GSVLTLASFVKVFHTAFFGPPSEKVMNVKEPPKPMLVPMLILAIAIIGMGLFPWQISDKL 499
Query: 471 M 471
M
Sbjct: 500 M 500
>gnl|CDD|183662 PRK12662, PRK12662, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 492
Score = 132 bits (333), Expect = 2e-31
Identities = 106/366 (28%), Positives = 182/366 (49%), Gaps = 17/366 (4%)
Query: 84 LMSSIIIFIKMFSCIYVKPFSCFEFPV--------IMLMAVLGMLCMISANDMISFYMSL 135
M ++ FI + S +Y + E V L+ + G+L ++ +ND+ + Y+ L
Sbjct: 80 TMLVLVNFIAVMSVLYGIYPNRKEISVNKIPSFYSAFLLCLGGLLGILVSNDVFNIYVFL 139
Query: 136 ELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATS 195
E+ S + YVL+AM R ++ AA +Y ++G + F L GI F+Y TG +
Sbjct: 140 EISSISSYVLVAMGRDKK-ALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLI 198
Query: 196 LFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLA-TIPKFATTM 254
+ + + +GV+ I+VGLF K AL PFH W+ Y +P F++ F + T K +
Sbjct: 199 IQDLPTNRAIQIGVLFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYL 258
Query: 255 ALCRITSVFWPMLSGLLP----IFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYA 310
+ + VF +FM ++ ++V GSV+AI KD+KR+ AYSSI H GY
Sbjct: 259 IIRIVYDVFKANFVFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYI 318
Query: 311 LIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFL 369
++ S G+ A V Y+V + I+ F S+ G + D L + +
Sbjct: 319 ILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTT--KLEDCLNLWKSMPKI 376
Query: 370 TCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIM 429
T A + SL G+PP +GF K+++L + +K ++ +V L+ S +S Y +++ +
Sbjct: 377 TLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKIVEAL 436
Query: 430 WFDQST 435
+F+
Sbjct: 437 YFESRM 442
>gnl|CDD|181533 PRK08668, PRK08668, NADH dehydrogenase subunit M; Validated.
Length = 610
Score = 121 bits (305), Expect = 5e-28
Identities = 101/363 (27%), Positives = 180/363 (49%), Gaps = 18/363 (4%)
Query: 84 LMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALY 143
++S ++IF F + K + F + LM++ G+L + AND+++ Y+ E+ +F+ +
Sbjct: 76 MISLLVIFSVAFFMVSEKTKNDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSF 135
Query: 144 VLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIG-HRS 202
+++ M +K S +A+LKYFVL A + +LY I IY TG F+ I+ L
Sbjct: 136 MMVPMGKK--ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGLINDTSTG 193
Query: 203 FVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFL------ATIPKFATTMAL 256
F LIV + L+ G K + P H+W PD Y +P +A L F + +
Sbjct: 194 FALIVFLFLLAFG-VAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYV 252
Query: 257 CRITSVFWPM-----LSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYAL 311
T +F + I + S+++G+++AI Q+D+K+L+AYSS+ + GY L
Sbjct: 253 LPGTKLFSEFGTYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYIL 312
Query: 312 IGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLT 370
+G G LG + ++ + + FF ++ + G IS++ GL + F
Sbjct: 313 VGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRTGT--TKISEMGGLIEKMPFTF 370
Query: 371 CALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMW 430
+ + SLAGIPP +GF K+ + + + + + A +A S+ S Y R ++ ++
Sbjct: 371 AMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLAGVF 430
Query: 431 FDQ 433
Q
Sbjct: 431 LGQ 433
>gnl|CDD|183663 PRK12663, PRK12663, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 497
Score = 115 bits (291), Expect = 2e-26
Identities = 92/331 (27%), Positives = 160/331 (48%), Gaps = 7/331 (2%)
Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGA 167
P I+L+ + G++ D+ + Y+ E+ A +VLI + + + A+KY VL
Sbjct: 111 PPFILLL-MAGVIGSFLTGDLFNLYVWFEVMLIASFVLITLG-QEREQLRGAIKYVVLNL 168
Query: 168 FSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHM 227
S L GI +YG G + IA L + L +L L+ K AL PF M
Sbjct: 169 IGSWLFLLGIGLLYGTFGTLNMAHIAMRLNDMGDTATLTTIALLFLLAFGMKAALFPF-M 227
Query: 228 WIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLL-PIFMCVSIGSMVLGS 286
W+P Y + A A + AL R+ ++ +P LL P+ ++ +MV+G+
Sbjct: 228 WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFPQERELLHPLLATMAAITMVIGA 287
Query: 287 VVAIRQKDLKRLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSL 345
+ A+ KD++R+ Y I G+ L+G + G GI + Y+V +++ F SL
Sbjct: 288 LGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSL 347
Query: 346 RRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFY 405
R G +++ L GL R++ I +F++ G+PPF+GF+GK L+ A+ Y
Sbjct: 348 VRLTGY--RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAY 405
Query: 406 VLAIVALLSSVISAYYYLRVISIMWFDQSTE 436
+L + L++S+I+ Y R+ + ++
Sbjct: 406 ILLALMLITSLITMYSLFRIFFLAYWGDKDG 436
>gnl|CDD|180504 PRK06277, PRK06277, hydrogenase subunit F; Validated.
Length = 478
Score = 100 bits (251), Expect = 9e-22
Identities = 108/413 (26%), Positives = 194/413 (46%), Gaps = 21/413 (5%)
Query: 17 IIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLIMPYE---GIGLGGAY--- 70
+++ F ++ ++ + + + F V +L L FL Y G GL Y
Sbjct: 6 LMVVFPMICAIIFNLLHGKDKLIKYLTFIVAILLPILPFLASYGYYYFGGHGLVNGYHSG 65
Query: 71 ISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMIS 130
I+ F+ + I+ + S+I + + + + K S + +MLM + + ++ A+D+ +
Sbjct: 66 ITYLFNPAKQIIIFVLSLIASLVLITGLGEKKSSGL-YVFLMLMGLASVSAIVLADDIFN 124
Query: 131 FYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFS 190
Y+ E+ + L+ + + +AALKY +LG + + LL GI F+ TG +
Sbjct: 125 LYVFFEIAAIVQVGLVIASGTE-EAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNIT 183
Query: 191 QIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKF 250
I +L + S V+ G++L++ GL + L PFH D+Y + F +A L T KF
Sbjct: 184 DIHNALLVNPTSPVIYGGLLLLIFGLLYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKF 243
Query: 251 ATTMALCRITSVF--WPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAG 308
+ I +F + + +S+ +MV G V+A+ Q D KRL+AY +I G
Sbjct: 244 VLVALMLVIFKLFGGLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGG 303
Query: 309 YALIGFSTGM-LGIVA----MVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLS 363
Y G + G LGIVA + +++ + +G I+S R K N+ L GL
Sbjct: 304 YVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAG--IVSYRTKTS----NLRKLGGLL 357
Query: 364 RQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSV 416
+ + +++G+PPF GF K L +A++ LAI+ ++ S+
Sbjct: 358 PVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSI 410
>gnl|CDD|162632 TIGR01972, NDH_I_M, proton-translocating NADH-quinone
oxidoreductase, chain M. This model describes the 13th
(based on E. coli) structural gene, M, of bacterial NADH
dehydrogenase I, as well as chain 4 of the corresponding
mitochondrial complex I and of the chloroplast NAD(P)H
dehydrogenase complex.
Length = 479
Score = 100 bits (251), Expect = 1e-21
Identities = 88/358 (24%), Positives = 170/358 (47%), Gaps = 19/358 (5%)
Query: 81 AILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSF 140
++L+++++ + + + EF + L+ G++ + +A D++ FY+ E
Sbjct: 80 PLVLLTALLTLLSILASWESIQKRVKEFYALFLLLEAGVIGVFAALDLLLFYVFWEAMLI 139
Query: 141 ALYVLIAM----NRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQ-IATS 195
+Y+LI + NR I AA+K+F+ S +L I +Y G + I
Sbjct: 140 PMYLLIGVWGGPNR-----IYAAMKFFLYTLAGSLLMLLAILGLYFLGGTFDLLELINLP 194
Query: 196 LFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMA 255
L ++++ + + K+ L P H W+PD + +P + LA + T
Sbjct: 195 LPFSVQTWLFLA----FFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYG 250
Query: 256 LCRITSVFWPMLSG-LLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIG- 313
R +P S P+ +++ +++ G+++A+ Q D+KRL+AYSSI H G+ L+G
Sbjct: 251 FLRFNLPLFPDASLYFAPVLAALAVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGI 310
Query: 314 FSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCAL 373
FS LGI V M+ + ++ F + L + ++I+ GL+ + L
Sbjct: 311 FSFNELGISGAVFQMISHGLITAALFLLVGVLYDRAHT--RDIAKYGGLANKMPVLAAFF 368
Query: 374 TIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWF 431
+F + G+P +GF G+ FL++ + V+A +A L V++A Y L + ++F
Sbjct: 369 MLFAMASLGLPGTSGFVGE-FLILLGAFKVNPVVAFLAALGIVLTAAYMLWLYKRVFF 425
>gnl|CDD|183665 PRK12665, PRK12665, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 521
Score = 97.0 bits (242), Expect = 9e-21
Identities = 85/319 (26%), Positives = 155/319 (48%), Gaps = 7/319 (2%)
Query: 113 LMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAF 172
L+ V G+ A D+ + Y+ E+ A YVL+ + + + A + Y ++ SS
Sbjct: 118 LILVAGVSNAFLAGDLFNLYVGFEILLVASYVLLTL-GATAARVRAGVTYVMVSMVSSLL 176
Query: 173 LLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDV 232
L GI+ +Y TG + +A L + VL LV K A+ P W+PD
Sbjct: 177 FLIGIALVYAATGTLNMADLAVRLDELPSGTRTALFAVL-LVAFGIKAAVFPLSFWLPDS 235
Query: 233 YEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQ 292
Y +P +TA A + A+ R ++ +P GL + M V++ +MV+G + AI Q
Sbjct: 236 YPTAPAPVTAVFAGLLTKVGVYAIIRTHTLLFPG-GGLDTLLMVVALLTMVVGILGAIAQ 294
Query: 293 KDLKRLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGN 351
D+KRL++++ + H GY + G + + G+ + Y+ ++ + F + + R+ G+
Sbjct: 295 SDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGS 354
Query: 352 NIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVA 411
+ ++ L GL++ L + +L GIPPF+GF GK LL + + + LA
Sbjct: 355 S--SLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAE-DGTWLAWAL 411
Query: 412 LLSSVISAYYYLRVISIMW 430
+ V+++ L ++ +W
Sbjct: 412 VAGGVVTSLLTLYAVARVW 430
>gnl|CDD|183650 PRK12650, PRK12650, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 962
Score = 93.6 bits (233), Expect = 1e-19
Identities = 93/341 (27%), Positives = 161/341 (47%), Gaps = 23/341 (6%)
Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGA 167
F ++M + ML ++ A+D++ +++ EL S A + LIA + +++ +L
Sbjct: 112 FYLLMTAFMAAMLLLVLADDVVVLFVAWELVSLASFFLIARSGSG--GEAGSIRTLILTF 169
Query: 168 FSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHM 227
F LL ++ TG T S I S + + V VLI V F K A PFH
Sbjct: 170 FGGLTLLAAVAIAATQTGTTSLSGILHSDVWAEKPGLTTVVAVLIAVAAFTKSAQFPFHF 229
Query: 228 WIPDVYEG-SPMFMTAFL--ATIPKFATTMALCRITSVFW--PMLSGLLPIFMCVSIGSM 282
W+P+ +P ++AFL A + K A L R + VF + + LL I V + +
Sbjct: 230 WLPEAMAAITP--VSAFLHAAAVVK-AGIYLLLRFSPVFHDVAVWNWLLII---VGMITA 283
Query: 283 VLGSVVAIRQKDLKRLMAYSSIGHAGY--ALIGFSTGMLGIVAMVRYMVIYLIMMIGFFS 340
++G+V A+++ DLK+L AYS++ G+ A IG T + A V + + + + F
Sbjct: 284 LMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTP-FALTAAVVHTLAHALFKSSLFM 342
Query: 341 CILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAV 400
I + + G ++I L L R+ F ++TI S+A +PP GF K +L + +
Sbjct: 343 LIGVVDHQAGT--RDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFL 400
Query: 401 KREF-----YVLAIVALLSSVISAYYYLRVISIMWFDQSTE 436
+ +L + A L +V + Y R++ + D +
Sbjct: 401 EAPGGNAGVVLLLVGAALGAVFTFAYSARLVLGAFVDGPRD 441
>gnl|CDD|183647 PRK12647, PRK12647, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 761
Score = 88.8 bits (221), Expect = 3e-18
Identities = 90/330 (27%), Positives = 165/330 (50%), Gaps = 40/330 (12%)
Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGA 167
F +L+ + ML ++ ++++I+ ++ EL S ++LI N + + AAL+ ++
Sbjct: 97 FYSYILLFMASMLGLVLSDNLITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTG 156
Query: 168 FSSAFLLYGISFIYGFTGCTGFSQIATS--LFIGHRSFVLIVGVVLILVGLFFKMALVPF 225
LL G+ + TG S++ S + H ++ I+ +L+L G F K A PF
Sbjct: 157 GGGLALLAGLILLGNVTGTYSLSELLASGDVIREHPLYLAIL--LLVLGGAFTKSAQFPF 214
Query: 226 HMWIPDVYEGSPMFMTAFL--ATIPKFATTMALCRITSVFWPMLSG------LLPIFMCV 277
H W+P+ E +P ++A+L AT+ K A L R+ P+L G +LP+F +
Sbjct: 215 HFWLPNAME-APTPVSAYLHSATMVK-AGIYLLARLN----PVLGGTPLWQTILPLFGGL 268
Query: 278 SIGSMVLGSVVAIRQKDLKRLMAYSSIGHAG--YALIGFSTGMLGIVAMVRYMVIY---- 331
+ M+ G+++A+RQ DLK ++AYS++ G L+G + L I A V ++V +
Sbjct: 269 T---MLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSE-LAIKAAVLFLVAHSLYK 324
Query: 332 --LIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGF 389
L M+ G + + G ++I+ L GL R A + S+AG+PP GF
Sbjct: 325 GALFMVAG------IIDHETGT--RDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGF 376
Query: 390 FGKYFLLISAVKREFY--VLAIVALLSSVI 417
K + + ++ + +L + A+L + +
Sbjct: 377 LAKELIYEALLEAPLWSLILTVAAVLGNAL 406
>gnl|CDD|180900 PRK07234, PRK07234, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 470
Score = 87.3 bits (217), Expect = 7e-18
Identities = 80/302 (26%), Positives = 134/302 (44%), Gaps = 32/302 (10%)
Query: 125 ANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFT 184
D+IS Y++LE+ S A ++L+A R +I L+Y + F L G +Y
Sbjct: 113 CADLISLYVALEVLSIATFLLVAYPRTDR-AIWVGLRYLFYSNVAMLFYLIGAVLVYQAN 171
Query: 185 GCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFL 244
G FS +AT+ LI +GL K + +W+P + + ++A L
Sbjct: 172 GTFAFSGLATA-----DPEAF----ALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALL 222
Query: 245 ATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSI 304
+ + A L R + GL I +G+ +LG + A+ +KDLKR++A+S+I
Sbjct: 223 SGVVVKAGVFPLVRCA----LDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTI 278
Query: 305 GHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSR 364
G+ L G L Y + + ++ F C +L + N + IS + G+ +
Sbjct: 279 SQLGFILAAPLVGGL-------YALAHGLVKSTLFLCAGALPSR--NFTELISQMLGIGK 329
Query: 365 QDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLR 424
LT+ FS+AG P AGF K L + + AI L++V +A + +
Sbjct: 330 W-----IPLTMASFSIAGFPLLAGFVSKVLTLKNLLP----WQAIALNLAAVGTAASFWK 380
Query: 425 VI 426
I
Sbjct: 381 FI 382
>gnl|CDD|181085 PRK07691, PRK07691, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 496
Score = 86.5 bits (215), Expect = 1e-17
Identities = 70/304 (23%), Positives = 147/304 (48%), Gaps = 9/304 (2%)
Query: 127 DMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGC 186
D+ + ++ E+ A YVLI + + + ++KY ++ SSAF + ++ +Y G
Sbjct: 129 DIFNLFVFFEVMLMASYVLIVIGGTKI-QLRESIKYVLINVVSSAFFVVAVAILYSVVGT 187
Query: 187 TGFSQIA---TSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAF 243
+ I+ L G + +V ++ + V K L P + W+P Y P+ + A
Sbjct: 188 LNMADISVKIAELSAGQTGLITVVAILFLFV-FATKAGLFPLYFWLPGSYYAPPIAIAAL 246
Query: 244 LATIPKFATTMALCRITSVFWPMLSGLL-PIFMCVSIGSMVLGSVVAIRQKDLKRLMAYS 302
+ A+ R ++F+ + + + +++ +++ G + A+ D+K+++ Y+
Sbjct: 247 FGALLTKVGVYAIARTFTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYN 306
Query: 303 SIGHAGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAG 361
+ G L+G + G++ + Y++ +I+ F I + + G ++ + G
Sbjct: 307 IMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTT--DLKKMGG 364
Query: 362 LSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYY 421
L ++ L I SLAGIPP +GF+GK+F++ + FYV I+ LLSS++ Y
Sbjct: 365 LIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYS 424
Query: 422 YLRV 425
+++
Sbjct: 425 VIKI 428
>gnl|CDD|183646 PRK12646, PRK12646, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 800
Score = 84.8 bits (210), Expect = 4e-17
Identities = 83/347 (23%), Positives = 158/347 (45%), Gaps = 35/347 (10%)
Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGA 167
F + + + M+ ++ +++ I Y+ EL S + ++LI+ + S A++ F++
Sbjct: 112 FYFYLTLFMFSMIGIVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITV 171
Query: 168 FSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHM 227
F LL G +Y TG ++I + I + + L+G F K A PFH+
Sbjct: 172 FGGLALLVGFIMLYIMTGTNNITEILGQADHIKNHGLFIPMIFMFLLGAFTKSAQFPFHI 231
Query: 228 WIPDVYEGSPMFMTAFL--ATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLG 285
W+P +P ++A+L AT+ K A L R T + + + + I V + +M+ G
Sbjct: 232 WLPRAMA-APTPVSAYLHSATMVK-AGIFLLFRFTPLL-GLSNMYIYIVTFVGLITMLFG 288
Query: 286 SVVAIRQKDLKRLMAYSSIGHAGY--ALIGFSTG--------MLGIVAMVRYMVIYLIMM 335
S+ A++Q DLK ++AYS+I G A++G G + I V + ++ +M
Sbjct: 289 SITALKQWDLKGILAYSTISQLGMIMAMVGIGGGYAQHQQDAIASIYVFVLFAALFHLMN 348
Query: 336 IGFFSCILSLRRKDGNNI-------QNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAG 388
F C L + G I ++I L+G+ + + +TI S+AG+P G
Sbjct: 349 HAIFKCALFM----GVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNG 404
Query: 389 FFGKYFL---LISAVKREFY------VLAIVALLSSVISAYYYLRVI 426
F K L + + ++ + +++S+ + Y L ++
Sbjct: 405 FLSKEMFLDALTQTGQLSQFSLISMIIIVFIGVIASIFTFTYALYMV 451
>gnl|CDD|180285 PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M;
Reviewed.
Length = 497
Score = 84.5 bits (210), Expect = 5e-17
Identities = 80/324 (24%), Positives = 146/324 (45%), Gaps = 21/324 (6%)
Query: 113 LMAVLGMLCMISANDMISFYMSLELQSFALYVLIAM----NRKSVFSIEAALKYFVLGAF 168
L G++ + +A D++ FY+ E +Y LI + NR I AA K+F+
Sbjct: 118 LWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWGGKNR-----IYAATKFFLYTLL 172
Query: 169 SSAFLLYGISFIYGF----TGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVP 224
S +L I ++ TG + + + L + + KM + P
Sbjct: 173 GSLLMLVAIIYLVVVYYNATGTFDIADLLNLPLPPGVQYWLFLA---FFIAFAVKMPMFP 229
Query: 225 FHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSG-LLPIFMCVSIGSMV 283
H W+PD + +P + LA I L R + +P S PI + + + +++
Sbjct: 230 LHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDASHEFAPIIITLGVIAII 289
Query: 284 LGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCI 342
G++VA+ Q D+K+L+AYSSI H G+ +G G LGI + M+ + + F +
Sbjct: 290 YGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLV 349
Query: 343 LSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKR 402
L + ++I+D GL++ L F + G+P +GF G++ +L+ + +
Sbjct: 350 GVLYDRLHT--RDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQV 407
Query: 403 EFYVLAIVALLSSVISAYYYLRVI 426
V+A +A +++A Y L +
Sbjct: 408 NP-VIAFIATTGLILAAVYSLWLY 430
>gnl|CDD|180571 PRK06458, PRK06458, hydrogenase 4 subunit F; Validated.
Length = 490
Score = 84.6 bits (210), Expect = 6e-17
Identities = 75/311 (24%), Positives = 150/311 (48%), Gaps = 13/311 (4%)
Query: 118 GMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGI 177
ML +++N++ ++++E + + +L+ + R S+EAA KY ++ + AF L+G
Sbjct: 120 TMLLALTSNNLGLMWVAIEATTLSSALLVGIYRTRA-SLEAAWKYIIICSVGVAFALFGT 178
Query: 178 SFIY----GFTGCTGFSQIATSLFIGHRSF---VLIVGVVLILVGLFFKMALVPFHMWIP 230
+Y G + + T L ++ + V +L+G K+ L P H W+P
Sbjct: 179 ILVYANAATVMGDGEMAILWTELLKHASLLDPTLMKLAFVFLLIGFGTKVGLFPMHAWLP 238
Query: 231 DVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLP--IFMCVSIGSMVLGSVV 288
D + +P ++A L+ + A+ R + + P + + + S+++ +
Sbjct: 239 DAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDAAIGSDFPGRLLLIFGLLSVLVAAFF 298
Query: 289 AIRQKDLKRLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRR 347
+RQ+D+KRL AYSSI H G G LGI A + +M+ + + F ++ +
Sbjct: 299 LLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQ 358
Query: 348 KDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVL 407
K G ++I+ + GL + L + ++AG+PPF F ++ +L + + R ++
Sbjct: 359 KYGT--RDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARGPLLI 416
Query: 408 AIVALLSSVIS 418
AI+ LL ++
Sbjct: 417 AILLLLLLTLA 427
>gnl|CDD|162123 TIGR00940, 2a6301s01, Tmonovalent cation:proton antiporter. This
family of proteins constists of bacterial multicomponent
K+:H+ and Na+:H+ antiporters. The best characterized
systems are the PhaABCDEFG system of Rhizobium meliloti
which functions in pH adaptation and as a K+ efflux
system and the MnhABCDEFG system of Staphylococcus
aureus which functions as a Na+:H+ antiporter.
Length = 793
Score = 81.4 bits (201), Expect = 5e-16
Identities = 100/379 (26%), Positives = 166/379 (43%), Gaps = 34/379 (8%)
Query: 83 LLMSSIIIFIKMFSCIYV-KPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFA 141
LL++ I + + ++S Y+ K F +L + ML ++ ++++I Y+ EL S
Sbjct: 82 LLITGIGVLVVLYSIYYLSKEEPLPNFYAYLLAFMGAMLGVVLSDNLILLYVFWELTSIV 141
Query: 142 LYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHR 201
++LI+ S A K + F +L G+ + TG + S
Sbjct: 142 SFLLISYWHHRAHSRYGAQKSLTITVFGGLAMLGGLILLGKITGSFSIDAVIASADAIRN 201
Query: 202 SFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFL--ATIPKFATTMALCRI 259
S + +VL+L+G F K A PFH+W+PD E +P ++A+L AT+ K A L R
Sbjct: 202 SPLFGTAMVLVLLGAFTKSAQFPFHIWLPDAME-APTPVSAYLHSATMVK-AGLYLLARF 259
Query: 260 TSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG-- 317
T VF I + +++ GS AI Q+DLK ++A+S+I G ++ G
Sbjct: 260 TPVF-AGTEAWFWIVGLAGLITLLWGSYFAIFQQDLKGILAFSTISQLGLIMVLLGLGSP 318
Query: 318 ------------MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGL-SR 364
L VA V +++ + F + + G ++I L GL
Sbjct: 319 SYHYQGDDSKIYALAAVAAVFHLINHATFKGSLFMAAGIIDHETGT--RDIRKLGGLFHI 376
Query: 365 QDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREF----------YVLAIVALLS 414
I T A+ I ++AG+PPF GF K A+ Y+ VA ++
Sbjct: 377 MPITFTLAM-IASAAMAGVPPFNGFLSKEMFFAEAITAHLVNPFDTVTLGYLFPYVATVA 435
Query: 415 SVISAYYYLRVISIMWFDQ 433
SV + Y LR I ++F +
Sbjct: 436 SVFTFVYSLRFIHGVFFGR 454
>gnl|CDD|180945 PRK07363, PRK07363, NAD(P)H-quinone oxidoreductase subunit M;
Validated.
Length = 501
Score = 80.5 bits (199), Expect = 9e-16
Identities = 90/323 (27%), Positives = 161/323 (49%), Gaps = 20/323 (6%)
Query: 111 IMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAM--NRKSVFSIEAALKYFVLGAF 168
++L+ G+ + A +++ F++ EL+ Y+LIA+ K + A++K+ + A
Sbjct: 112 LILLINGGIAGALLAQNLLLFFLFYELELIPFYLLIAIWGGEKRGY---ASIKFLIYTAV 168
Query: 169 SSAFLLYGISFIYGFTGCTGF--SQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFH 226
S +L I +G T F I+T + +L+ G +L+G K+ LVP H
Sbjct: 169 SGLLVLAAFLGIVWLSGSTSFDYDAISTQNLSLNTQLILLTG---LLLGFGIKIPLVPLH 225
Query: 227 MWIPDVY-EGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLL-PIFMCVSIGSMVL 284
W+PD Y E SP + L + T L R +P L+ P + S++
Sbjct: 226 TWLPDAYTEASPA-VAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAPGLAIIGTISVIY 284
Query: 285 GSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCIL 343
G++ AI QKD+KR++AYSSIGH GY L+ + G L ++ V M+ + +++ F +
Sbjct: 285 GALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVG 344
Query: 344 SLRRKDGNNIQNISDLAGLSR--QDIFLTCALTIFL-FSLAGIPPFAGFFGKYFLLISAV 400
+ RK G +++ L GL + + LT AL + + AGIP GF + F++
Sbjct: 345 IVERKVGT--RDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAE-FIVFQGS 401
Query: 401 KREFYVLAIVALLSSVISAYYYL 423
F + ++ +++S ++A Y++
Sbjct: 402 FSTFPIPTLLCIVASGLTAVYFV 424
>gnl|CDD|181532 PRK08667, PRK08667, hydrogenase membrane subunit; Validated.
Length = 644
Score = 79.8 bits (197), Expect = 2e-15
Identities = 97/416 (23%), Positives = 181/416 (43%), Gaps = 44/416 (10%)
Query: 16 EIIIAFGILFLLLMGVF-----SRRKNAFHLVVFPVCLLSIALFFLLIMPYEGI------ 64
+ IL LL V +RK + V++ V +++ LF + + G
Sbjct: 3 AGLFLGAILLLLAAAVIPLVFRHKRKRVWQSVLWLVIAIALLLFAGSLQLFTGNPLDIPL 62
Query: 65 -----GLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFE----FPVIMLMA 115
GL + DR + F I+L+ + + + ++S Y + S E + +
Sbjct: 63 WGIAPGLDITFHIDRLAAFF--IILIGLVSLCVAIYSLGYNEHMSSNERANLLSALTALF 120
Query: 116 VLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLY 175
+L ML ++++ + SF E+ + + + L+ + + + A + YFV+ S+ FL+
Sbjct: 121 ILSMLGVVASANTFSFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLML 180
Query: 176 GISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEG 235
GI ++ TG S + S I F +L+ +G K ++PFH W+P +
Sbjct: 181 GIIVLFIQTGSFELSPLGASAGILSLVF------LLLFLGFGIKAGIIPFHKWLPYAHPA 234
Query: 236 SPMFMTAFLATIPKFATTMALCR-ITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKD 294
SP ++A ++ + L R + V P L + I + SI S +LG + A+++ D
Sbjct: 235 SPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLILLAGSI-SALLGVIYALKEHD 293
Query: 295 LKRLMAYSSIGHAGYALIGF------------STGMLGIVAMVRYMVIYLIMMIGFFSCI 342
LK L+AYSSI + G L+G + +L + + + + + + F
Sbjct: 294 LKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLALLALGGALFHSLNHALFKSLLFLTA 353
Query: 343 LSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLIS 398
S+ G +NI + GL + + + + S+A +PPF GF + L S
Sbjct: 354 GSVVHATGT--RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYES 407
>gnl|CDD|180580 PRK06473, PRK06473, NAD(P)H-quinone oxidoreductase subunit D4;
Validated.
Length = 500
Score = 79.4 bits (196), Expect = 2e-15
Identities = 95/361 (26%), Positives = 180/361 (49%), Gaps = 23/361 (6%)
Query: 82 ILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFA 141
+L+++S++ I ++S F + +++L+ G+ A D++ F++ EL+
Sbjct: 84 LLVLNSLLTLIAIYSSDESIQRPRFYYSLLLLLN-AGVSGAFLAQDLLLFFLFYELELIP 142
Query: 142 LYVLIAM---NRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFS---QIATS 195
LY+LIA+ R+ AA K+ + A S +L + +G + F + +
Sbjct: 143 LYLLIAIWGGQRRGY----AATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHT 198
Query: 196 LFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMA 255
L + + +L ILVG K+ LVPFH W+PD + + ++ LA + T
Sbjct: 199 LPLSTQLLLLA----PILVGFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYG 254
Query: 256 LCRITSVFWP-MLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGF 314
L R +P L P ++ S++ G+ AI QKD+K+++AYSSIGH GY L+
Sbjct: 255 LLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAA 314
Query: 315 STGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGL--SRQDIFLTC 371
+ L I+A V M+ + ++ F + + +K G+ +++ L GL + + +T
Sbjct: 315 AAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGS--RDVDVLRGLLNPERGLPITG 372
Query: 372 ALTIF-LFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMW 430
+L I + + AGIP GF + FL+ F V ++ ++ + ++A Y+L +++ ++
Sbjct: 373 SLMILGVMASAGIPGMVGFIAE-FLVFRGSFPIFPVQTLLCMIGTGLTAVYFLLLVNRVF 431
Query: 431 F 431
F
Sbjct: 432 F 432
>gnl|CDD|181537 PRK08676, PRK08676, hydrogenase membrane subunit; Validated.
Length = 485
Score = 76.7 bits (189), Expect = 1e-14
Identities = 100/434 (23%), Positives = 194/434 (44%), Gaps = 38/434 (8%)
Query: 22 GILFLLLMGVFSRRKNAFHL--VVFPVCLLSIALFFLLIMPYEGIGLGGAYIS-DRFSYF 78
L L +G+ SR + + + L ++L+ LL++P G + Y+ D F
Sbjct: 8 VALLFLRLGLLSRSHRLLNALALGHGLWHLGLSLWVLLVLPLPGYFMESRYLFIDHLGIF 67
Query: 79 IKAILLMSSIIIFIKMFSCIYV-----------KPFSCFEFPVIMLMAVLGMLCMISAND 127
+ +L+ S + I +++ YV + F +L++V+ +++
Sbjct: 68 V--VLIASVVFILAALYARGYVDHLLSNGELDPENLKVFYLGFNLLLSVITF--AFFSDN 123
Query: 128 MISFYMSLELQSFALYVLIA-MNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFT-G 185
+ F++ EL + +LIA ++ + +I+AALKY + + + F G+ F++ T
Sbjct: 124 LALFWIFAELTTVFSAMLIAILSARE--NIDAALKYIFIASTAMIFAFIGLIFLFSLTRQ 181
Query: 186 CTGFSQIATSLFIGHRSF----VLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMT 241
G + + H S VL + I +G K LVPFH W+P Y +P ++
Sbjct: 182 ALGTGTLNWTELAAHASLLSPSVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVS 241
Query: 242 AFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVA----IRQKDLKR 297
A L+ + R++++ SG F V IG + VA + Q++LK+
Sbjct: 242 ALLSGTVLNIGIYGILRLSALL--RQSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKK 299
Query: 298 LMAYSSIGHAGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNI 356
L+A+SSI H G L+G G L + M+ +M+ + ++ G F L R+ ++ +
Sbjct: 300 LIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFD- 358
Query: 357 SDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVAL---L 413
+ + R + + ++ G+PPF F K+F+L+ +++ V L L
Sbjct: 359 -RIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLL 417
Query: 414 SSVISAYYYLRVIS 427
++ A + L+ +
Sbjct: 418 AASSFAIFLLKAFT 431
>gnl|CDD|180634 PRK06591, PRK06591, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 432
Score = 76.4 bits (188), Expect = 2e-14
Identities = 78/337 (23%), Positives = 143/337 (42%), Gaps = 33/337 (9%)
Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIA--MNRKSVFSIEAALKYFVL 165
F I+L A G L MI+ ND + Y+ +E+ + + YVLIA N KS+ A Y ++
Sbjct: 117 FYGILLFAHTGYLGMIATNDFFNLYVFIEISALSSYVLIASGNNPKSLI---GAFDYLIM 173
Query: 166 GAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPF 225
G+ + +L I F+ TG + IA L S ++ + + L+G K A P
Sbjct: 174 GSIGATLILIAIGFLLSITGSLNMTDIAAYLQEHTNSRIITIAIGFFLIGAILKTAFFPM 233
Query: 226 HMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVS------- 278
H W+ Y + + +LA I +T+ I F ++ G I ++
Sbjct: 234 HFWMMRAYNNTASVILVYLAGI----STIIGIYIIYKFTYIIIGYETIKTAITNFIRPIA 289
Query: 279 IGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGF 338
+ ++++ A + K+ K ++ YS GY + + T GI+ + ++ I I
Sbjct: 290 LATLIIAPYFAYQAKNFKNIIIYSCFTQIGYVFLLYVTEN-GIIILPSLLLADSINKIAL 348
Query: 339 FSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLIS 398
F + D S + + I + G+P FF K +L
Sbjct: 349 F----------------LIDAYNESYKREPNKVLIIIAIICSCGLPISPLFFIKVNILEL 392
Query: 399 AVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQST 435
+ + + I+ LLSSV S +Y+ +++ +++ +
Sbjct: 393 LLTQNLLLDFIIILLSSVGSLFYHYKMVLLLFPTKQE 429
>gnl|CDD|130019 TIGR00944, 2a6301s04, Multicomponent K+:H+antiporter.
Length = 463
Score = 75.6 bits (186), Expect = 3e-14
Identities = 69/348 (19%), Positives = 145/348 (41%), Gaps = 7/348 (2%)
Query: 113 LMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAF 172
+ G+ D+ + ++ E+ A Y L+ + ++ LKY + SSA
Sbjct: 112 QFLLAGLNGAFLTGDLFNLFVFFEMMLAASYGLLVHGSTKI-QLKEGLKYIAVNLVSSAL 170
Query: 173 LLYGISFIYGFTGCTGFSQIATSLFI---GHRSFVLIVGVVLILVGLFFKMALVPFHMWI 229
+ G+S +YG G + ++T L R V + +L +V L K + P W+
Sbjct: 171 FVIGVSLLYGVAGTLNMADLSTKLAALEPRSRGLVEMGSALLGVVFLV-KAGMFPLSFWL 229
Query: 230 PDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMC-VSIGSMVLGSVV 288
P Y P + A + A+ R+ + + +G ++ +++ +++ G +
Sbjct: 230 PTAYYAPPPPIAAVFGALLTKVGIYAIIRLHLLVFGTAAGFGHEWLVTLAMLTIIFGGIG 289
Query: 289 AIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRK 348
+ +++ ++ Y+ + G L G + G G++A Y +++ ++ G ++ L +
Sbjct: 290 VLAYQNMGKIAGYNVLVAVGVILAGVALGTDGMLAGAIYYLVHDMLTKGALFLLIGLVIR 349
Query: 349 DGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLA 408
G + GL ++ L I SLAGIPP +GF GK+ ++ +
Sbjct: 350 -GTGTATLEAYGGLIKRYPVLGWCFFICALSLAGIPPLSGFIGKFAIISGLFDMGDWTYV 408
Query: 409 IVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKEMRLFIFGSILFV 456
+ LLSS+ Y R+ ++ V E++ + + +
Sbjct: 409 TLLLLSSLAVLYSVNRIFIRTFWGSIKTIPRVNVIEIKPLVVLAGACI 456
>gnl|CDD|162634 TIGR01974, NDH_I_L, proton-translocating NADH-quinone
oxidoreductase, chain L. This model describes the 12th
(based on E. coli) structural gene, L, of bacterial NADH
dehydrogenase I, as well as chain 5 of the corresponding
mitochondrial complex I and subunit 5 (or F) of the
chloroplast NAD(P)H-plastoquinone dehydrogenase complex.
Length = 617
Score = 74.6 bits (184), Expect = 6e-14
Identities = 85/326 (26%), Positives = 141/326 (43%), Gaps = 30/326 (9%)
Query: 119 MLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGIS 178
ML ++ A++ + + E Y+LI K + AA+K FV+ LL GI
Sbjct: 127 MLMLVLADNFLQLFFGWEGVGLCSYLLIGFWYKKPSANNAAIKAFVVNRVGDFGLLLGIF 186
Query: 179 FIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPM 238
I+ + G F ++ +L G L + +L+ +G K A +P H W+PD EG
Sbjct: 187 LIFWYFGTLNFQEV-FALAPGADFSALTLICLLLFIGAMGKSAQLPLHTWLPDAMEGP-- 243
Query: 239 FMTAFLATIPKFATTMA------LCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQ 292
T A I A TM + R TS + + L + + + + + VA+ Q
Sbjct: 244 --TPVSALI--HAATMVTAGVYLVAR-TSPLFELSPTALYLVTIIGAITALFAATVALVQ 298
Query: 293 KDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNN 352
D+KR++AYS+ GY + G I+ +M FF +L L G+
Sbjct: 299 NDIKRILAYSTCSQLGYMFLALGVGAYAAA-------IFHLMTHAFFKALLFL--GAGSV 349
Query: 353 I------QNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYV 406
I Q+I + GL ++ I +L G P FAGFF K +L +A +
Sbjct: 350 IHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHS 409
Query: 407 LA-IVALLSSVISAYYYLRVISIMWF 431
+ L+ + ++A+Y R+I + +
Sbjct: 410 FLFVAGLIGAFLTAFYSFRLIFMTFH 435
>gnl|CDD|183645 PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A;
Reviewed.
Length = 800
Score = 74.2 bits (183), Expect = 6e-14
Identities = 82/308 (26%), Positives = 139/308 (45%), Gaps = 35/308 (11%)
Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGA 167
F V +L+ + ML ++ ++++I Y+ EL S + ++LI+ + S A K ++
Sbjct: 112 FYVYLLLFMGAMLGVVLSDNLIVLYLFWELTSISSFLLISYWYEREASRYGAQKSMLITV 171
Query: 168 FSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHM 227
F +L G +Y TG ++ + S + I ++LIL+G F K A PF++
Sbjct: 172 FGGLSMLGGFILLYIMTGSFSIREMIANADEIQNSPLFIPAMILILLGAFTKSAQFPFYI 231
Query: 228 WIPDVYEGSPMFMTAFL--ATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLG 285
W+PD E +P ++A+L AT+ K A + R T +F V + ++ G
Sbjct: 232 WLPDAME-APTPVSAYLHSATMVK-AGIYLVARFTPIF-AGSQVWFWTVTLVGLITLFWG 288
Query: 286 SVVAIRQKDLKRLMAYSSIGHAG--------------YALIGFSTGMLGIVAMVRYMVIY 331
S+ A++Q DLK ++A+S++ G Y I A + +++ +
Sbjct: 289 SLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAASLHYQGDDSKIYAAAITAAIFHLINH 348
Query: 332 ------LIMMIGFFSCILSLRRKDGNNIQNISDLAGLSR-QDIFLTCALTIFLFSLAGIP 384
L M++G R +I L GL I T AL I S+AG+P
Sbjct: 349 ATFKGSLFMIVGIVDHETGTR--------DIRKLGGLMTIMPITFTIAL-IGALSMAGLP 399
Query: 385 PFAGFFGK 392
PF GF K
Sbjct: 400 PFNGFLSK 407
>gnl|CDD|183649 PRK12649, PRK12649, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 789
Score = 71.4 bits (175), Expect = 5e-13
Identities = 80/305 (26%), Positives = 143/305 (46%), Gaps = 25/305 (8%)
Query: 112 MLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSA 171
+L+ + M+ M+ + + I ++ EL S ++LI R S+ A K ++ A
Sbjct: 117 LLLFMGSMIGMVFSGNTIQLFIFWELTSITSFMLIGYWRHRPESVYGATKSLLITAGGGL 176
Query: 172 FLLYGISFIYGFTGCTGFSQIATS---LFIGHRSFVLIVGVVLILVGLFFKMALVPFHMW 228
F+ G ++ TG + I + + ++ ++LI +G K A PF++W
Sbjct: 177 FMFAGFLLLHVITGTYDIATILQDSELIENIKGHPLFLITLILIFIGAAAKSAQGPFYIW 236
Query: 229 IPDVYEGSPMFMTAFL--ATIPKFATTMALCRITSVFWPMLSGLLPIFMCVS---IGSMV 283
+P+ E +P ++AFL AT+ K A + RI P+ SG F+ VS + +MV
Sbjct: 237 LPNAME-APTPVSAFLHSATMVK-AGVYLVARIH----PIFSGTEAWFILVSGTGMITMV 290
Query: 284 LGSVVAIRQKDLKRLMAYSSIGHAGY--ALIGFSTGM---LGIVAMVRYMVIYLIMMIGF 338
L +A RQ D+K ++AYS+I Y + G++T LG+ A +L+ F
Sbjct: 291 LAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTTYHEPGLGVAA----ATFHLLNHATF 346
Query: 339 FSCILSLRRKDGNN--IQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLL 396
+C+ + + ++I L GL ++ +I ++AGIPP GF K
Sbjct: 347 KACLFLVAGIVAHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFY 406
Query: 397 ISAVK 401
++V+
Sbjct: 407 ETSVE 411
>gnl|CDD|183644 PRK12644, PRK12644, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 965
Score = 70.3 bits (173), Expect = 9e-13
Identities = 76/283 (26%), Positives = 132/283 (46%), Gaps = 23/283 (8%)
Query: 119 MLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGIS 178
M ++++++++ Y+ EL + ++LI + S AAL+ ++ +L GI
Sbjct: 119 MFGLVTSDNLLLLYVFWELTTVLSFLLIGHYAERAASRRAALQALLVTTAGGLAMLVGII 178
Query: 179 FIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPM 238
+ G S++ G + V VVLILVG K A+VPFH W+P +P
Sbjct: 179 ILGQAAGTYRLSELLADPPTGP---AVSVAVVLILVGALSKSAIVPFHFWLPGAMA-APT 234
Query: 239 FMTAFL--ATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLK 296
++A+L A + K A + R+ F + P + + + +M+LG A+RQ DLK
Sbjct: 235 PVSAYLHAAAMVK-AGIYLVARLAPGF-ADVPVWRPTVLVLGLATMLLGGWRALRQHDLK 292
Query: 297 RLMAYSSIGHAGY--ALIGFST--GMLGIVAMVRYMVIY---LIMMIGFFSCILSLRRKD 349
++AY ++ G+ L+G T L +AM+ ++ L +++G R
Sbjct: 293 LILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALFLVVGIIDHSTGTR--- 349
Query: 350 GNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGK 392
+I L+GL R+ L + S+AG+PP GF K
Sbjct: 350 -----DIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
>gnl|CDD|180606 PRK06525, PRK06525, hydrogenase 4 subunit D; Validated.
Length = 479
Score = 69.6 bits (171), Expect = 2e-12
Identities = 74/345 (21%), Positives = 150/345 (43%), Gaps = 35/345 (10%)
Query: 112 MLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSA 171
+L+ + M ++ ++ ++ + E+ + LI+ +S ++ +ALK ++ S
Sbjct: 119 LLLFIGAMAGLVYSSTLLGLLLFFEITGLCSWALISY-YQSPKALRSALKALLITHIGSL 177
Query: 172 FLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPD 231
L + ++ TG S ++ L + V + IL + K A +PF+ W+PD
Sbjct: 178 GLYLAAATLFLQTGTFALSALS-GLHGSLKYLVFL----GILFAAWGKSAQLPFYSWLPD 232
Query: 232 VYEGSPMFMTAFL---ATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVV 288
E P +A+L + + A + P + G + M + ++ G ++
Sbjct: 233 AMEA-PTPASAYLHAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVT--LLYGFLM 289
Query: 289 AIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLI----------MMIGF 338
+ Q+D+KRL+AYS+I GY G S +LG + + Y+ ++ G
Sbjct: 290 YLPQQDMKRLLAYSTITQLGYMFFGLSLAILGSRLALEGSIAYIFNHAFAKSLFFLVAGA 349
Query: 339 FSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLIS 398
S R L G+ ++ + + ++ G+PPF GFF K+ + +
Sbjct: 350 LSYSCGTRLLPR--------LRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAA 401
Query: 399 A--VKREFYVL---AIVALLSSVISAYYYLRVISIMWFDQSTECV 438
+ E+++L ++ L+ SV S ++LR + F + +E V
Sbjct: 402 GFELSVEYWILLPAMVLLLIESVASFAWFLRWFGRVVFGEPSEAV 446
>gnl|CDD|180952 PRK07376, PRK07376, NAD(P)H-quinone oxidoreductase subunit F;
Validated.
Length = 673
Score = 66.2 bits (162), Expect = 2e-11
Identities = 91/326 (27%), Positives = 153/326 (46%), Gaps = 32/326 (9%)
Query: 119 MLCMISANDMISFYMSLELQSFALYVLIAM--NRKSVFSIEAALKYFVLGAFSSAFLLYG 176
ML ++ + +++ Y+ EL Y+L+ +RK + +AA K FV+ LL G
Sbjct: 135 MLGLVISPNLVQIYVFWELVGMCSYLLVGFWYDRKG--AADAAQKAFVVNRVGDFGLLLG 192
Query: 177 ISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFF-----KMALVPFHMWIPD 231
I ++ TG F IA L S + + L+L L F K A P H+W+PD
Sbjct: 193 ILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLLCILVFLGPMAKSAQFPLHVWLPD 252
Query: 232 VYEGSPMFMTAFLATIPKFATTMA------LCRITSVFWPMLSGLLPIFMCVSIGSMVLG 285
EG T A I A TM + R+ VF ++ + + LG
Sbjct: 253 AMEGP----TPISALI--HAATMVAAGVFLVARMYPVFEQ-FPAVMTVIAWTGAITAFLG 305
Query: 286 SVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG--MLGIVAMVRYMVIYLIMMIGFFSCIL 343
+ +A+ Q D+K+ +AYS+I GY ++ G G+ ++ + ++ +G S I
Sbjct: 306 ASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIH 365
Query: 344 SLRRKDGNN---IQNISDLAGLSRQDIFLTCALTIFLFSLA--GIPPFAGFFGKYFLLIS 398
+ G++ Q++ + GL R+ + +T A+T + LA GIPPFAGF+ K +L +
Sbjct: 366 GMEEVVGHDPVLAQDMRLMGGL-RKYMPIT-AITFLIGCLAISGIPPFAGFWSKDEILGA 423
Query: 399 AVKREFYVLAIVALLSSVISAYYYLR 424
A + L V L++ ++A+Y R
Sbjct: 424 AFEA-NPALWFVGFLTAGMTAFYMFR 448
>gnl|CDD|180632 PRK06589, PRK06589, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 489
Score = 63.7 bits (155), Expect = 1e-10
Identities = 83/372 (22%), Positives = 167/372 (44%), Gaps = 42/372 (11%)
Query: 116 VLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSS-AFLL 174
++G+L +S+ D+ + ++ EL + + LI R ++ KY + S+ L
Sbjct: 127 LIGVLIALSS-DLFTMFVCYELLTISTAFLIGHTRNNISLS-GGYKYLKILMISALLLFL 184
Query: 175 YGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYE 234
+ IY TG F ++ LF ++S +L+ L+ + K A+ P H W+P
Sbjct: 185 PAVILIYTKTGNLDF--VSGGLFSKNQSIILL----LMFIYGIAKTAIFPVHSWLP---- 234
Query: 235 GSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIF---------------MCVSI 279
A +A P A A+ + + + + LL IF + + I
Sbjct: 235 ------AAMVAHYPVSALLHAVIVVKTGLFCIYKILLYIFGLSYLQRIFAEFNWLIFIPI 288
Query: 280 GSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALI-GFSTGMLGIVAMVRYMVIYLIMMIGF 338
S+ S+ A++ ++K+++AYS+I AL+ F + A + ++V + I
Sbjct: 289 VSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICL 348
Query: 339 FSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLIS 398
F + S+ + + L G S+ ++ ++I SL GIP F+GF K+ +L++
Sbjct: 349 FYSMGSIYSLKKED--QVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLA 406
Query: 399 AVKREFYVLAIVALL----SSVISAYYYLRVISIMWFDQSTECVVVVAKEMRLFIFGSIL 454
A ++ L+I+ +L SS++SA Y L+++S ++ +E + K + + S++
Sbjct: 407 ASEQNQPWLSIIVMLVVIASSILSALYLLKILSSIYKPSLSE-NSFITKSLPYLMQISVI 465
Query: 455 FVTGYFLIENIL 466
+ +
Sbjct: 466 TCCCALTLFYFI 477
>gnl|CDD|180602 PRK06521, PRK06521, hydrogenase 4 subunit B; Validated.
Length = 667
Score = 62.2 bits (152), Expect = 3e-10
Identities = 50/221 (22%), Positives = 97/221 (43%), Gaps = 14/221 (6%)
Query: 105 CFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFV 164
F + + + M+ ++ A+D SF ++ E S + + L+ N + A Y +
Sbjct: 116 GFFYNLF----LASMVLVLLADDAFSFLVAWETMSLSSWFLVIANHREAEIRRAGFLYLL 171
Query: 165 LGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVP 224
+ + +L + +G F+ + + F + +L L G K LVP
Sbjct: 172 MAHAGALAILLAFGLLARESGSYDFAAMRAA---HLSPFWASLVFLLALFGFGAKAGLVP 228
Query: 225 FHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLL----PIFMCVSIG 280
H+W+P + +P ++A ++ +A+ I V + +L + + +
Sbjct: 229 LHVWLPRAHPAAPSHVSALMS---GVMLKVAIYGILRVVFDLLGAPGWWWGVLVLALGAI 285
Query: 281 SMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGI 321
S VLG + A+ + DLKRL+AYS+I + G +G M+ I
Sbjct: 286 SAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGLGLAMVFI 326
>gnl|CDD|183648 PRK12648, PRK12648, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 948
Score = 59.0 bits (144), Expect = 3e-09
Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 14/127 (11%)
Query: 210 VLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFL--ATIPKFATTMALCRITSVFWPML 267
VLIL+G F K A PFH W+P +P ++A+L AT+ K A L R WP+L
Sbjct: 211 VLILLGAFTKSAQFPFHFWLPHAM-AAPTPVSAYLHSATMVK-AGVFLLAR----LWPVL 264
Query: 268 SGLLPIFMCVS---IGSMVLGSVVAIRQKDLKRLMAYSSIGHAGY--ALIGFSTGMLGIV 322
+G F V + +++LG+ A+ Q DLK L+AYS+I H G L+G + L V
Sbjct: 265 AGTEEWFWIVGGAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGS-PLAAV 323
Query: 323 AMVRYMV 329
A + +++
Sbjct: 324 AAIFHII 330
>gnl|CDD|131015 TIGR01960, ndhF3_CO2, NAD(P)H dehydrogenase, subunit NdhF3 family.
This family represents a subfamily of NAD(P)H
dehydrogenase subunit 5, or ndhF. It is restricted to
two paralogs in each completed cyanobacterial genome, in
which several subtypes of ndhF are found. Included in
this family is NdhF3, shown to play a role in
high-affinity CO2 uptake in Synechococcus sp. PCC7002.
In all cases, neighboring genes include a paralog of
ndhD but do include other NAD(P)H dehydrogenase
subunits. Instead, genes related to C02 uptake tend to
be found nearby.
Length = 606
Score = 55.1 bits (133), Expect = 3e-08
Identities = 64/315 (20%), Positives = 132/315 (41%), Gaps = 13/315 (4%)
Query: 120 LCMISANDMISF-YMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGIS 178
L + +D + F Y+ LE+ + + Y+LI + A F+ LL G+
Sbjct: 133 LGGLVLSDSLFFSYVLLEILTLSTYLLIGFWFAQPLVVTGARDAFLTKRVGDLILLMGVV 192
Query: 179 FIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILV-GLFFKMALVPFHMWIPDVYEGSP 237
+ G + +A + + + L L+ G K A P H+W+ + EG P
Sbjct: 193 ALSPLAGSWNYDDLAQWAATANVNPTTATLLGLALIAGPTGKCAQFPLHLWLDEAMEG-P 251
Query: 238 MFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSM--VLGSVVAIRQKDL 295
+ ++ L ++ V LS + + ++IGS+ + GS++AI Q D+
Sbjct: 252 NPASILRNSVVVATGAWVLIKLQPVL--TLSPVALTAL-IAIGSVTAIGGSLIAIAQIDI 308
Query: 296 KRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQN 355
KR ++YS + G I G + ++ ++ + I F I S+ Q+
Sbjct: 309 KRALSYSVSAYMGLVFIAVGLGQGDLALLL--LLTHAIAKALLFMSIGSIIWN--TVTQD 364
Query: 356 ISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSS 415
+++L GL + + + L +PP F+ L +++ ++ L+ +
Sbjct: 365 LTELGGLWSRRPISGLSFVVGSAGLIAVPPLGSFWAWLKLADGLWATSPWLVGVL-LVVN 423
Query: 416 VISAYYYLRVISIMW 430
+++A+ RV +++
Sbjct: 424 LLTAFNLTRVFRLVF 438
>gnl|CDD|179442 PRK02546, PRK02546, NAD(P)H-quinone oxidoreductase subunit 4;
Provisional.
Length = 525
Score = 53.9 bits (130), Expect = 8e-08
Identities = 57/217 (26%), Positives = 105/217 (48%), Gaps = 17/217 (7%)
Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAM--NRKSVFSIEAALKYFVL 165
F +ML G + + + DM+ F+++ EL+ +Y+L+A+ +K + AA K+ +
Sbjct: 117 FYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQY---AATKFILY 173
Query: 166 GAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSF-----VLIVGVVLILVGLFFKM 220
A SS F+L + + F A + + F +L +LI G+ K+
Sbjct: 174 TAGSSLFILLAALAMAFYGDTPTFDMTA----LAAKDFGLGFQLLCYAGLLIAYGV--KL 227
Query: 221 ALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLL-PIFMCVSI 279
+VP H W+PD + + + LA I AL R+ + P P+ + + +
Sbjct: 228 PIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQFAPLLIVLGV 287
Query: 280 GSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFST 316
+++ ++ + Q++LKR +AYSSI H G+ LIG +
Sbjct: 288 VNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGS 324
>gnl|CDD|183668 PRK12668, PRK12668, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 581
Score = 49.5 bits (119), Expect = 2e-06
Identities = 74/310 (23%), Positives = 123/310 (39%), Gaps = 55/310 (17%)
Query: 125 ANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFT 184
A D+++ ++ EL +F L+ ++ A +Y ++ LL GI Y T
Sbjct: 112 AGDLLTLFVFWELMAFTSTFLVWARGTKA-AVRAGFRYLLVHVLGGVLLLAGILLHYAET 170
Query: 185 GCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVY-EGSP---MFM 240
G F IA LIL+G A P H W+PD Y E + +F+
Sbjct: 171 GSFAFGAIAGLGGTA---------AWLILIGFGVNAAFPPLHAWLPDAYPEATVTGSVFL 221
Query: 241 TAF------LATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKD 294
+AF A F T L I + M V G A+ + D
Sbjct: 222 SAFTTKTAVYALARAFPGTELLIYIGAA------------MA------VYGVFFALLEND 263
Query: 295 LKRLMAYSSIGHAGYAL----IGFSTGMLGIVAMVRYMVIY---LIMMIGFFSCILSLRR 347
L+RL++Y + GY + IG + + G VA ++Y L M G + +
Sbjct: 264 LRRLLSYHIVSQVGYMVAGIGIGTALAINGAVAHAFNHILYKGLLFMSAG--AVLYRTGT 321
Query: 348 KDGNNIQNISDLAGLSRQDIFLTCALTIF-LFSLAGIPPFAGFFGKYFLLISAVKREFYV 406
+ ++L GL R + LT + S++ P F+GF K ++ +A + +
Sbjct: 322 EKL------TELGGLYRS-MPLTALFCLVGALSISAFPLFSGFVSKSMIISAAGEDHYVW 374
Query: 407 LAIVALLSSV 416
+ ++ LL+S
Sbjct: 375 VWLLLLLASA 384
>gnl|CDD|183596 PRK12561, PRK12561, NAD(P)H-quinone oxidoreductase subunit 4;
Provisional.
Length = 504
Score = 49.3 bits (118), Expect = 2e-06
Identities = 64/249 (25%), Positives = 115/249 (46%), Gaps = 25/249 (10%)
Query: 125 ANDMISFYMSLELQSFALYVLIAM----NRKSVFSIEAALKYFVLGAFSSAFLLYGISFI 180
A D++ F++ EL+ +Y+LI++ R AA K+ + A +S F+L
Sbjct: 106 AQDLLLFFLMWELELVPVYLLISIWGGQKRLY-----AATKFILYTALASIFILVA-GLA 159
Query: 181 YGFTGCTGFSQIATSLFIGHRSFVLIVGVVL---ILVGLFFKMALVPFHMWIPDVYEGSP 237
+G T +A +G +S+ L + ++L L+ K+ + P H W+PD + +
Sbjct: 160 LALSGDTFTFDLAE---LGAKSYPLALELLLYAGFLIAFGVKLPIFPLHTWLPDAHGEAS 216
Query: 238 MFMTAFLATIPKFATTMALCRITSVFWPMLSG----LLPIFMCVSIGSMVLGSVVAIRQK 293
++ LA + AL R ML P + + +++ G++ A Q
Sbjct: 217 APVSMILAGVLLKMGGYALIRFNV---QMLPDAHVYFAPALAILGVVNIIYGALNAFAQD 273
Query: 294 DLKRLMAYSSIGHAGYALIGF-STGMLGIVAMVRYMVIY-LIMMIGFFSCILSLRRKDGN 351
++KR +AYSS+ H G+ L+G + LGI + M+ + LI FF ++ R
Sbjct: 274 NVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTL 333
Query: 352 NIQNISDLA 360
+I N+ LA
Sbjct: 334 SIPNMGGLA 342
>gnl|CDD|180572 PRK06459, PRK06459, hydrogenase 4 subunit B; Validated.
Length = 585
Score = 48.2 bits (115), Expect = 4e-06
Identities = 61/322 (18%), Positives = 139/322 (43%), Gaps = 36/322 (11%)
Query: 112 MLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSA 171
++ +LGM ++++++ + F E+ + YV IA+ +K+ A + G S+
Sbjct: 78 YILTILGMAIVLTSDNYLLFLAGWEIMTIPSYVAIALTKKNK---RPAFVFMAFGELSTV 134
Query: 172 FLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHM--WI 229
+L G ++ + +G T FS + + V ++L G KM ++PF + W+
Sbjct: 135 LILAGFAWAFIISGTTNFSYLPS-----------PVPLILASFGFIIKMGMMPFLVSEWL 183
Query: 230 PDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIF-MCVSIGSMVLGSVV 288
P + +P +A L+ + ++T + + G + + + S++ G++
Sbjct: 184 PIAHGNAPSNFSAILSATMTLMGVYGILKMTILTQTIPIGYFGLTILAIGAFSILFGALY 243
Query: 289 AIRQKDLKRLMAYSSIGHAGYALIGFSTGMLG-----------IVAMVRYMVIYLIMMIG 337
A +++K L+A+S+I + G L+ M+ ++ ++ Y + + G
Sbjct: 244 AYVSENVKGLLAFSTIENNGAILVALGLYMVTKQLITSIEHFSLITVILYSFAHSVAKTG 303
Query: 338 FFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLI 397
F ++ + I ++ ++ LT+ SL+G+ P G + LL
Sbjct: 304 LFLSSGLQEKQSITYSKKI--------RNRWIELGLTLLASSLSGLLPNIGGVASWLLLE 355
Query: 398 SAVKREFYVLAIVALLSSVISA 419
S + + ++++L V A
Sbjct: 356 SLFMFAYVLHNVISILFIVTGA 377
>gnl|CDD|180633 PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L;
Reviewed.
Length = 624
Score = 47.9 bits (115), Expect = 6e-06
Identities = 80/289 (27%), Positives = 133/289 (46%), Gaps = 42/289 (14%)
Query: 158 AALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQI--ATSLFIGHRSFVLIVGVVLILVG 215
AA+K F++ L GI ++ G + ++ A F G L + +L+ +G
Sbjct: 167 AAMKAFIVNRVGDVGLALGIFLLFAEFGSLNYDEVFAAAPQFFGLGWSALTLICLLLFIG 226
Query: 216 LFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITS-VFWPMLSGLLPIF 274
K A P H W+PD EG T A I A TM +T+ V+ +++ + P+F
Sbjct: 227 AMGKSAQFPLHTWLPDAMEGP----TPVSALI--HAATM----VTAGVY--LVARMSPLF 274
Query: 275 ----------MCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAM 324
V + + + + + Q D+KR++AYS++ GY + LG+ A
Sbjct: 275 ELSPEALLFVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLA-----LGVGAY 329
Query: 325 VRYMVIYLIMMIGFFSCILSLRRKDGNNI------QNISDLAGLSRQDIFLTCAL-TIFL 377
I+ +M FF +L L G+ I Q+I + GL ++ + +T A I
Sbjct: 330 A--AAIFHLMTHAFFKALLFL--GAGSVIHAMHHEQDIRKMGGLRKK-MPVTYATFLIGT 384
Query: 378 FSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVI 426
+L GIPPFAGFF K +L +A L + L+ + ++A+Y R+I
Sbjct: 385 LALIGIPPFAGFFSKDEILEAAFANGHINLFVAGLVGAFLTAFYSFRLI 433
>gnl|CDD|168619 PRK06588, PRK06588, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 506
Score = 47.9 bits (114), Expect = 7e-06
Identities = 62/251 (24%), Positives = 115/251 (45%), Gaps = 19/251 (7%)
Query: 119 MLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGIS 178
++C+ +A D IS +SLE + ++I ++ I+ A +YF+ FSS +L G++
Sbjct: 62 IICVFAA-DFISMIISLEFMTIFACIIIFCDQ---LKIKPARQYFLTHLFSSGLILIGMT 117
Query: 179 FIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPM 238
+ T T F+ + S+ +F L + IL G + + + W+ + Y P+
Sbjct: 118 LLIQTTSNTAFTSLTESVN----NFEL--PAIFILAGCLINASAIFVNGWVVNCY---PI 168
Query: 239 FMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRL 298
++ + + F T + L I +F SGL I I ++ G V ++ +K+LKRL
Sbjct: 169 ASSSGIVYLISFTTKVTLIIILKLF----SGL-EILKFFGISMIIYGLVFSLIEKNLKRL 223
Query: 299 MAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISD 358
+ Y ++ G+ L S I ++ + I+ G F+ + +D +I+N D
Sbjct: 224 ICYLTVSQLGFILAAISINSPNIAYLITSFIFIHILYNGLFALYFAY-IEDEYDIKNYQD 282
Query: 359 LAGLSRQDIFL 369
L I L
Sbjct: 283 LQNTQINFILL 293
>gnl|CDD|183666 PRK12666, PRK12666, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 528
Score = 44.8 bits (107), Expect = 4e-05
Identities = 63/292 (21%), Positives = 119/292 (40%), Gaps = 39/292 (13%)
Query: 156 IEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIAT--SLFIGHRSFVLIVGVVLIL 213
+ A L Y + +S+ L G+ IYG TG + +A + +L G L+L
Sbjct: 158 VRAGLHYVAINLVASSLFLIGVGLIYGVTGTLNMADLAQRIAQLPAADRALLEAGAALLL 217
Query: 214 VGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLL-- 271
V K A+ P + W+P Y + + A A + K A+ R++++ + +G
Sbjct: 218 VVFLIKAAMWPLNFWLPPAYAAASAPVAALFAIMTKVGI-YAILRLSTLLFGPEAGASAG 276
Query: 272 ---PIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG----------- 317
+ + ++ G++ + + L+RL AY + +G L G
Sbjct: 277 FGQDWLLPGGLATLAFGAIGVLAAQRLRRLAAYLVLVSSGTLLAAIGLGNPAATAAALYY 336
Query: 318 ----MLGIVAMVRYMVIYLIMMI-GFFSCILSLRRKDGNNIQNISDLAGLSRQD------ 366
L A+ +++ L+ G + L++ + + + + G++
Sbjct: 337 LVHSTLAAAAL--FLLADLVERQRGAAADRLAVTPELYDLDEEEEEEVGVAIPATMALLG 394
Query: 367 -IFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVI 417
+F CAL +LAG+PP +GF GK F L+ A+ A L + V+
Sbjct: 395 LLFFICAL-----ALAGLPPLSGFLGK-FALLQALLNPPGAGAAWWLWALVL 440
>gnl|CDD|180955 PRK07390, PRK07390, NAD(P)H-quinone oxidoreductase subunit F;
Validated.
Length = 613
Score = 38.4 bits (90), Expect = 0.004
Identities = 62/277 (22%), Positives = 111/277 (40%), Gaps = 34/277 (12%)
Query: 172 FLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLI--VGVVLILVGLFFKMALVPFHMWI 229
LL G+ + G FS +A + + +G+ LI G K A P H+W+
Sbjct: 186 LLLMGVVALSPLAGTLNFSDLAAWAATANLDPLTATLLGLALI-AGPTGKCAQFPLHLWL 244
Query: 230 PDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSM--VLGSV 287
+ EG P + ++ L ++ V LS + + + IG++ + S+
Sbjct: 245 DEAMEG-PNPASILRNSVVVATGAWVLIKLQPVL--ALSPVALTVL-IVIGTVTAIGASL 300
Query: 288 VAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGI---------VAMVRYMVIYLIMMIGF 338
VAI Q D+KR ++YS+ + G I I +A L M +G
Sbjct: 301 VAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKA-----LLFMSVG- 354
Query: 339 FSCILSLRRKDGNNIQNISDLAGL-SRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLI 397
S IL+ Q++++L GL SR L L + P GF+ L
Sbjct: 355 -SIILT------TITQDLTELGGLWSRMPATTLAFLVGSA-GLVALLPLGGFWALLRLAD 406
Query: 398 SAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQS 434
+++ ++ LL + ++A+ RV +++ +
Sbjct: 407 GLWAVSPWLVGVL-LLVNALTAFNLTRVFRLVFLGKP 442
>gnl|CDD|181206 PRK08042, PRK08042, formate hydrogenlyase subunit 3; Reviewed.
Length = 593
Score = 36.7 bits (85), Expect = 0.012
Identities = 41/198 (20%), Positives = 96/198 (48%), Gaps = 24/198 (12%)
Query: 213 LVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLP 272
++G ++P H W+P + + A +T+ + L I ++ +L G P
Sbjct: 187 VIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTV---VMKIGLLGILTL--SLLGGNAP 241
Query: 273 IF-----MCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGI------ 321
++ + + + + +G + A+ + +++RL+AY ++ + G L+G G+ GI
Sbjct: 242 LWWGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIALEQPA 301
Query: 322 -VAMVRYMVIYLIMMIGFFSCIL-----SLRRKDGNNIQNISDLAGLSRQDIFLTCALTI 375
+A+ +Y ++ F +L S+ + G+ ++I L G+ ++ ++ A+ +
Sbjct: 302 LIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGH--RDIEKLGGIGKKMPVISIAMLV 359
Query: 376 FLFSLAGIPPFAGFFGKY 393
L ++A +PP GF G++
Sbjct: 360 GLMAMAALPPLNGFAGEW 377
>gnl|CDD|183664 PRK12664, PRK12664, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 527
Score = 33.6 bits (77), Expect = 0.11
Identities = 60/325 (18%), Positives = 122/325 (37%), Gaps = 43/325 (13%)
Query: 83 LLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAV--LGMLCMISANDMISFYMSLELQSF 140
L++ ++ F +Y+ P F ++ + + + IS++ + + E +
Sbjct: 38 LVLFIVLSFSLALIFLYILPIKNMRFSEMLCYLLYYISSIAAISSSSLTLVVIGFEFMAL 97
Query: 141 ALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYG-ISFIYGFTGCTGFSQIATSLFIG 199
+ ++IA G AF+ Y + F G G S A +
Sbjct: 98 SALMIIAAG--------------CPGGNIGAFIHYACVHFFSGVLLLVGASGQAQNGQYT 143
Query: 200 HRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRI 259
+L ++GL A P W+ D Y + F L+ F T +A
Sbjct: 144 GYC------KLLFMLGLLINCACFPASSWVVDAYPAASNFGIIVLSL---FTTKVAAL-- 192
Query: 260 TSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGML 319
V SG I + + I + + G + A +++++RL+ Y+ +G G +I
Sbjct: 193 --VLLLFFSGE-EILLFLGIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGS 249
Query: 320 G------IVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCAL 373
++ + V+Y ++ +++ RK N++ + GL + + C +
Sbjct: 250 SGVAIGILILQIVLSVVYQTLLFMVADSVINRTRK-----FNLNRVGGLFKMSLEAMCCI 304
Query: 374 TIFLFSLAGIPPFAGFFGKYFLLIS 398
I + ++ P AGF K + S
Sbjct: 305 -IAILNMGAFPGTAGFVSKSLITHS 328
>gnl|CDD|181264 PRK08168, PRK08168, NADH dehydrogenase subunit L; Provisional.
Length = 516
Score = 32.7 bits (75), Expect = 0.23
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 1/123 (0%)
Query: 113 LMAVLGML-CMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSA 171
L VL + ++ ++ ++ + S AL+ L+ F+ AA K F+ +
Sbjct: 106 LAGVLAAVHLLVLSDHLLVLIAAWAAISLALHRLLCFYPDRPFARLAAHKKFIADRLAEL 165
Query: 172 FLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPD 231
LL + Y G S + L S L +L+++ + K A +P H W+
Sbjct: 166 LLLAAAALAYLEVGSLSLSALWAHLAAQGASPSLQAAALLLVLAVILKTAQLPVHGWLIQ 225
Query: 232 VYE 234
V E
Sbjct: 226 VME 228
>gnl|CDD|129992 TIGR00914, 2A0601, heavy metal efflux pump (cobalt-zinc-cadmium).
This model represents a family of H+/heavy metal cation
antiporters. This family is one of several subfamilies
within the scope of pfam model pfam00873.
Length = 1051
Score = 30.5 bits (69), Expect = 1.1
Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 17/140 (12%)
Query: 180 IYGFTGCTG--FSQIATSLFIGHRS-FVLIVGVVLILVGLFFKMAL----VPFHMWIPDV 232
I+ TG G F +A ++ + +L + V V LF + + +
Sbjct: 466 IFTLTGVEGKMFHPMAFTVVLALAGAMILSLTFVPAAVALFIRGKVAEKENRLMRVLKRR 525
Query: 233 YE-------GSPM-FMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVL 284
YE P + A +I R+ F P L+ + + I L
Sbjct: 526 YEPLLERVLAWPAVVLGAAAVSI--VLVVWIASRVGGEFIPSLNEGDLAYQALRIPGTSL 583
Query: 285 GSVVAIRQKDLKRLMAYSSI 304
VA++Q K + ++ +
Sbjct: 584 AQSVAMQQTLEKLIKSFPEV 603
>gnl|CDD|184222 PRK13665, PRK13665, hypothetical protein; Provisional.
Length = 316
Score = 29.1 bits (66), Expect = 2.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 202 SFVLIVGVVLILVGLFFKMALVPFHMWI 229
LI+ VLI++ L + VP +WI
Sbjct: 4 LIGLIIIAVLIIIFLIVFFSFVPVGLWI 31
>gnl|CDD|178238 PLN02631, PLN02631, ferric-chelate reductase.
Length = 699
Score = 28.9 bits (64), Expect = 2.9
Identities = 38/174 (21%), Positives = 78/174 (44%), Gaps = 25/174 (14%)
Query: 82 ILLMSSIIIFIKMFSCIYV-------KPFSCFEFPVIM--LMAVLGMLCMISANDMISFY 132
++L++ ++FI + SC+Y+ +P ++ M ++ V+ L +++A ++
Sbjct: 55 LVLLTVPMMFIAVLSCVYLHTQKKPTQPQREWKLKRRMGRVIMVMNPLGIVTATELTFSL 114
Query: 133 MSLELQSFALYVLIAM-------NRKSVFSIEAALKYFVL-----GAFSSAFLLYGI--- 177
+ + L +++LY + + N + +A + F L G AFL + +
Sbjct: 115 LFVALLAWSLYNYLYLSYHVHLHNDDNAKIWQAKFRAFGLRIGYVGHICWAFLFFPVTRA 174
Query: 178 SFIYGFTGCTGFSQIATSLFIGHRS-FVLIVGVVLILVGLFFKMALVPFHMWIP 230
S I G T S I +++GH S F+ +V V+ L+ L+ W P
Sbjct: 175 STILPLVGLTSESSIKYHIWLGHVSNFLFLVHTVVFLIYWAMINKLMETFAWNP 228
>gnl|CDD|179199 PRK00989, truB, tRNA pseudouridine synthase B; Provisional.
Length = 230
Score = 28.3 bits (63), Expect = 4.1
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 265 PMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGML 319
G+L + S L IR L +L+ IGHAG L F+TG++
Sbjct: 6 ESKEGILLVDKPQGRTSFSL-----IR--SLTKLIGVKKIGHAG-TLDPFATGVM 52
>gnl|CDD|179229 PRK01122, PRK01122, potassium-transporting ATPase subunit B;
Provisional.
Length = 679
Score = 27.9 bits (63), Expect = 6.0
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 367 IFLTCALT-IFLFSLAGIPPFAGFFG 391
I L LT IFL +A +PPFA + G
Sbjct: 220 ILLA-GLTIIFLLVVATLPPFAAYSG 244
>gnl|CDD|132155 TIGR03111, glyc2_xrt_Gpos1, putative glycosyltransferase TIGR03111.
Members of this protein family probable
glycosyltransferases of family 2, whose genes are near
those for Gram-positive proteins (TIGR03110) related to
the proposed exosortase (TIGR02602).
Length = 439
Score = 27.8 bits (62), Expect = 7.0
Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 40 HLVVFPVCLLSIALFFLLIMPYEGIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIY 99
H FP + A+ FL+ + Y + G+ + Y + + L ++ IF+K + I
Sbjct: 317 HTFAFPRMIWYFAMIFLIFLGYPVKLVVGSNLLIYILYVLSSFLNFINVKIFLKEYKEI- 375
Query: 100 VKPFSCFEFPVIMLMAVLGMLC 121
+ + ++ +I L+ + +
Sbjct: 376 -RDYYKKKWYIIFLLPIYNFVV 396
>gnl|CDD|183993 PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional.
Length = 410
Score = 27.6 bits (62), Expect = 8.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 280 GSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLG 320
S+ +G +V + + LKR GH LIG TG +G
Sbjct: 45 PSLHIGHLVPLMK--LKRFQDA---GHRPVILIGGFTGKIG 80
>gnl|CDD|129116 TIGR00004, TIGR00004, endoribonuclease L-PSP, putative. This
protein was described initially as an inhibitor of
protein synthesis intiation but is now viewed as an
endoribonuclease active on single-stranded mRNA. The
cleavage of mRNA is responsible for the inhibition of
protein synthesis. A role in purine regulation has also
been suggested.
Length = 124
Score = 27.3 bits (61), Expect = 8.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 352 NIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYF 394
N++ I + AGLS D+ T T+FL L +G+YF
Sbjct: 56 NLKAILEAAGLSLDDVVKT---TVFLTDLNDFAEVNEVYGQYF 95
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.337 0.148 0.446
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,905,178
Number of extensions: 547459
Number of successful extensions: 2826
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2584
Number of HSP's successfully gapped: 259
Length of query: 478
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 381
Effective length of database: 3,898,497
Effective search space: 1485327357
Effective search space used: 1485327357
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 59 (26.5 bits)