BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780867|ref|YP_003065280.1| NADH dehydrogenase subunit N [Candidatus Liberibacter asiaticus str. psy62] (478 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780867|ref|YP_003065280.1| NADH dehydrogenase subunit N [Candidatus Liberibacter asiaticus str. psy62] Length = 478 Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/478 (100%), Positives = 478/478 (100%) Query: 1 MSPVSFINDLRLCIPEIIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLIMP 60 MSPVSFINDLRLCIPEIIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLIMP Sbjct: 1 MSPVSFINDLRLCIPEIIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLIMP 60 Query: 61 YEGIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGML 120 YEGIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGML Sbjct: 61 YEGIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGML 120 Query: 121 CMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFI 180 CMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFI Sbjct: 121 CMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFI 180 Query: 181 YGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFM 240 YGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFM Sbjct: 181 YGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFM 240 Query: 241 TAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMA 300 TAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMA Sbjct: 241 TAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMA 300 Query: 301 YSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLA 360 YSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLA Sbjct: 301 YSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLA 360 Query: 361 GLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAY 420 GLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAY Sbjct: 361 GLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAY 420 Query: 421 YYLRVISIMWFDQSTECVVVVAKEMRLFIFGSILFVTGYFLIENILNSSIMKIVMSLF 478 YYLRVISIMWFDQSTECVVVVAKEMRLFIFGSILFVTGYFLIENILNSSIMKIVMSLF Sbjct: 421 YYLRVISIMWFDQSTECVVVVAKEMRLFIFGSILFVTGYFLIENILNSSIMKIVMSLF 478 >gi|254780866|ref|YP_003065279.1| NADH dehydrogenase subunit M [Candidatus Liberibacter asiaticus str. psy62] Length = 499 Score = 75.5 bits (184), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 80/300 (26%), Positives = 142/300 (47%), Gaps = 10/300 (3%) Query: 127 DMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGC 186 DM+ FY+ E ++V+I + S I AA K+F+ F S F+L+ I + Sbjct: 133 DMLLFYIFFEASLIPMFVIIGVWGGSE-RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKT 191 Query: 187 TGFSQI-ATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLA 245 + + A S F + + + K+ + PFH W+P+ + +P + FLA Sbjct: 192 SSIIDLYAMSKFPFSIQYWMWIA---FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248 Query: 246 TIPKFATTMALCRITSVFWPMLSGLL-PIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSI 304 I R +P+ S P+ +S+ +++ S+V++ Q D+K+L+AYSSI Sbjct: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 Query: 305 GHAGYALIGFSTGML-GIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLS 363 H GY IG +GM G+ + M+ + ++ F C+ + D + ++I GL Sbjct: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY--DRLHTRDIFAYGGLV 366 Query: 364 RQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYL 423 + +F + G+P +GF G+ FL+I +V + +A++A V+SA Y L Sbjct: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGE-FLVIMSVFQNSNTVAVLASFGVVLSALYSL 425 >gi|254780865|ref|YP_003065278.1| NADH dehydrogenase subunit L [Candidatus Liberibacter asiaticus str. psy62] Length = 666 Score = 53.1 bits (126), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 76/315 (24%), Positives = 138/315 (43%), Gaps = 48/315 (15%) Query: 119 MLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSS-------- 170 ML ++S+++++ + E A Y+LI +I+A++K FV+ Sbjct: 129 MLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAIS 188 Query: 171 --AFLLYGISFIYGFTGCTGFSQIATSLFIG---HRSF------VLIVGVVLILVGLFF- 218 +L + + F F + + +I S+ G HRSF V + I+ LFF Sbjct: 189 AIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFL 248 Query: 219 ----KMALVPFHMWIPDVYEG-SPMFMTAFLATIPKFATTMALCRITSVFW--PMLSGLL 271 K A + H+W+PD EG +P+ AT+ A + R++ +F P + + Sbjct: 249 GAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVT-AGVFLVARMSPLFELSPFVLDCI 307 Query: 272 PIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLG--IVAMVRYMV 329 + C+ + + V + Q D+KR++AYS+ GY + G I + + Sbjct: 308 TVLGCI---TAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAF 364 Query: 330 IYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLA----GIPP 385 ++ +G S I ++ + Q++ + GL + TC + I + +LA GIP Sbjct: 365 FKALLFLGSGSVIHAVAGE-----QDMRRMGGLYPH-LPRTCWMMI-VGTLALTGFGIPE 417 Query: 386 ----FAGFFGKYFLL 396 F+GFF K +L Sbjct: 418 TSIGFSGFFSKDIIL 432 >gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Length = 187 Score = 26.2 bits (56), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%) Query: 321 IVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSR 364 I MVRYM + + FFS ++S++ + G N+ LA LSR Sbjct: 69 ISRMVRYMPL---QEVSFFSTVISVQSQLGGNLSEA--LANLSR 107 >gi|254780896|ref|YP_003065309.1| ABC transporter membrane spanning protein (branched chain amino acid) [Candidatus Liberibacter asiaticus str. psy62] Length = 351 Score = 25.4 bits (54), Expect = 2.4, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 16/111 (14%) Query: 65 GLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMIS 124 G G Y++DR YF+ + S+I F + P S + + M +LGM C +S Sbjct: 146 GKAGIYVADRL-YFLGTTV--RSLIRFFRF-------PSSFVIYEIFMYYVLLGM-CFLS 194 Query: 125 ANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAF--SSAFL 173 A+ I ++ S A + I N+K+ FS+ + + L AF SSAF+ Sbjct: 195 AS--IILWLRRTAISNA-WRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFI 242 >gi|254780427|ref|YP_003064840.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62] Length = 171 Score = 24.3 bits (51), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 9/50 (18%) Query: 425 VISIMWFDQ---STECVVVVAKEMRLFIFGSILFVTGYFLIENILNSSIM 471 V + +W D+ T C VV AK + S L GYF+ ENI+ S++ Sbjct: 17 VENALWGDEIHLRTLCEVVFAKAV------SNLISKGYFVKENIVELSLV 60 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.337 0.148 0.446 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 283,414 Number of Sequences: 1233 Number of extensions: 11585 Number of successful extensions: 73 Number of sequences better than 100.0: 15 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 15 length of query: 478 length of database: 328,796 effective HSP length: 77 effective length of query: 401 effective length of database: 233,855 effective search space: 93775855 effective search space used: 93775855 T: 11 A: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 40 (20.0 bits)