HHsearch results for GI: 254780868 and protein with PDBid: 2c8m_A
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A*
Probab=95.67 E-value=0.05 Score=30.81 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=66.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEE----------CCCEEEECCCC
Q ss_conf 36799853166333341322353224000210137799999999997445421024621----------46506710221
Q gi|254780868|r 52 RGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKW----------PNDILVFQRKI 121 (252)
Q Consensus 52 rGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iKW----------PNDi~~~~kKi 121 (252)
|-+.|..=+-.+|++.+|++++.+.. .....--.++-++.++++.+. +++...= ++|+.++++|+
T Consensus 72 R~tGGGaV~hd~g~l~~s~i~~~~~~--~~~~~y~~i~~~i~~~l~~lG---i~a~~~~~~~~~~~~~~~~dl~~~~~Ki 146 (262)
T 2c8m_A 72 RYTGGGAVYHDLGDLNFSVVRSSDDM--DITSMFRTMNEAVVNSLRILG---LDARPGELNDVSIPVNKKTDIMAGEKKI 146 (262)
T ss_dssp CSSCSCCEEECTTEEEEEEEEECSSC--CHHHHHHHHHHHHHHHHHHTT---CCCEECCBCCTTSSSSBTTSEEETTEEE
T ss_pred EECCCCEEEECCCCEEEEEEEECCCC--CHHHHHHHHHHHHHHHHHHCC---CCEEECCCCCCEEECCCCCCCCCCCCCE
T ss_conf 70798379977998699998706899--999999999999999999849---5158857688267336566412356612
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCC----------C-CCC--------CCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 1222233232258326765215444446----------4-223--------36532100236778978999877799999
Q gi|254780868|r 122 AGILIETLNLKNGLQAVVVGIGLNVKHC----------P-VDT--------PYPVTSLQREGGCIDLKDIFSLLFQDVAR 182 (252)
Q Consensus 122 ~GIL~E~~~~~~~~~~~viGiGiNi~~~----------~-~~~--------~~~~tsL~~~~~~~~~~~l~~~l~~~l~~ 182 (252)
+|.-.-.. . ..++.+..|.++.. | +.+ ....|+|.+. ..++.+++.+.+++.+.+
T Consensus 147 ~G~a~~~~---~--~~~l~hgsll~~~d~~~~~~~l~~p~~~~~~k~~~s~~~~vt~l~~~-~~~~~eev~~~l~~~f~~ 220 (262)
T 2c8m_A 147 MGAAGAMR---K--GAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDF-VDVSIDEVRNALIRGFSE 220 (262)
T ss_dssp EEEEEEEE---T--TEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGT-SCCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEE---C--CEEEEEEEEEECCCHHHHHHHHCCCCHHHHHHCCCCHHHHCCCHHHC-CCCCHHHHHHHHHHHHHH
T ss_conf 53567865---8--87999999886389999998648993100220355367513058772-898999999999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780868|r 183 VLD 185 (252)
Q Consensus 183 ~~~ 185 (252)
.+.
T Consensus 221 ~~~ 223 (262)
T 2c8m_A 221 TLH 223 (262)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 868