Query gi|254780868|ref|YP_003065281.1| birA bifunctional protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 252
No_of_seqs 159 out of 2775
Neff 8.1
Searched_HMMs 23785
Date Tue May 31 22:36:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780868.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bia_A BIRA bifunctional prote 100.0 0 0 407.2 19.1 236 10-250 75-314 (321)
2 2cgh_A Biotin ligase; 1.8A {My 100.0 0 0 392.5 22.2 230 14-251 30-265 (268)
3 2eay_A Biotin [acetyl-COA-carb 100.0 0 0 386.2 19.0 223 14-250 3-228 (233)
4 2dxu_A Biotin--[acetyl-COA-car 100.0 0 0 379.2 18.9 223 10-250 7-230 (235)
5 2ej9_A Putative biotin ligase; 100.0 0 0 374.1 21.5 224 15-251 2-234 (237)
6 3bfm_A Biotin protein ligase-l 100.0 4.2E-45 0 299.1 21.0 224 8-252 6-233 (235)
7 3a7r_A Lipoate-protein ligase 97.3 0.0079 3.3E-07 35.8 13.3 152 52-213 70-251 (337)
8 2p0l_A Lipoate-protein ligase 97.3 0.00081 3.4E-08 42.0 7.1 167 10-184 9-246 (288)
9 2e5a_A Lipoyltransferase 1; li 97.2 0.0076 3.2E-07 35.9 11.7 153 53-213 74-253 (347)
10 1vqz_A Lipoate-protein ligase, 97.1 0.012 5.1E-07 34.7 11.4 138 39-187 50-224 (341)
11 2p5i_A BH3822 protein; PFAM030 97.0 0.0013 5.6E-08 40.6 6.2 171 3-183 4-246 (288)
12 2qhs_A Lipoyltransferase; glob 96.3 0.036 1.5E-06 31.7 9.5 121 53-185 94-226 (237)
13 2c8m_A Lipoate-protein ligase 95.7 0.05 2.1E-06 30.8 7.8 123 52-185 72-223 (262)
14 1w66_A Lipoyltransferase; lipo 94.9 0.11 4.8E-06 28.6 7.6 125 53-187 77-216 (232)
15 2ddz_A 190AA long hypothetical 90.1 0.46 1.9E-05 24.8 5.2 91 84-185 87-177 (190)
16 3cw1_A Small nuclear ribonucle 88.2 0.79 3.3E-05 23.4 5.2 38 202-239 8-46 (174)
17 1d3b_B Protein (small nuclear 86.0 1.3 5.4E-05 22.1 5.3 36 203-238 9-45 (91)
18 3cw1_G Small nuclear ribonucle 83.5 1.9 7.9E-05 21.0 5.2 34 204-237 10-44 (76)
19 3bw1_A SMX4 protein, U6 snRNA- 83.5 2 8.6E-05 20.8 6.8 33 206-238 18-51 (96)
20 1i4k_A Putative snRNP SM-like 81.8 2.4 9.9E-05 20.4 6.9 46 205-251 11-61 (77)
21 1i8f_A Putative snRNP SM-like 81.6 2.1 8.8E-05 20.7 4.8 34 205-238 18-52 (81)
22 1h64_1 SnRNP SM-like protein; 80.9 2.5 0.00011 20.2 5.5 46 205-251 11-61 (75)
23 2xdp_A Lysine-specific demethy 78.0 3.1 0.00013 19.6 5.2 47 206-252 66-113 (123)
24 1mgq_A SM-like protein; LSM, R 77.3 3.3 0.00014 19.5 6.8 46 205-251 22-72 (83)
25 1th7_A SnRNP-2, small nuclear 77.2 3.3 0.00014 19.5 6.0 34 205-238 16-50 (81)
26 3cw1_F Small nuclear ribonucle 74.7 3.9 0.00016 19.1 4.9 34 205-238 13-47 (86)
27 2fwk_A U6 snRNA-associated SM- 72.6 3 0.00013 19.7 3.6 34 205-238 35-69 (121)
28 1ljo_A Archaeal SM-like protei 71.5 4.6 0.00019 18.6 7.0 46 205-251 12-63 (77)
29 2equ_A PHD finger protein 20-l 70.4 4.9 0.0002 18.4 5.3 47 205-251 10-57 (74)
30 1n9r_A SMF, small nuclear ribo 66.9 5.7 0.00024 18.0 6.2 48 203-251 26-79 (93)
31 2qqr_A JMJC domain-containing 65.9 5 0.00021 18.3 3.6 48 205-252 64-112 (118)
32 1d3b_A Protein (small nuclear 62.5 6.9 0.00029 17.5 7.6 45 205-251 12-62 (75)
33 1m5q_A SMAP3, small nuclear ri 57.2 8.5 0.00036 16.9 6.3 31 206-236 8-39 (130)
34 1b34_A Protein (small nuclear 47.7 12 0.00051 16.0 5.6 33 205-237 9-42 (119)
35 1o5u_A Novel thermotoga mariti 47.6 6.8 0.00029 17.5 1.7 22 230-251 57-78 (101)
36 3cw1_D Small nuclear ribonucle 44.8 13 0.00056 15.7 4.9 28 208-235 15-43 (126)
37 2g3r_A Tumor suppressor P53-bi 43.9 14 0.00058 15.6 5.8 46 205-251 58-107 (123)
38 2l1s_A Uncharacterized protein 43.8 14 0.00058 15.6 2.8 26 225-251 55-80 (83)
39 3bcw_A Uncharacterized protein 42.7 10 0.00042 16.5 1.9 22 230-251 76-97 (123)
40 1ssf_A Transformation related 37.7 17 0.00073 15.0 5.5 15 101-115 63-77 (156)
41 3myx_A Uncharacterized protein 34.2 13 0.00057 15.7 1.5 22 230-251 194-215 (238)
42 3fn2_A Putative sensor histidi 31.0 22 0.00093 14.3 2.2 69 168-240 12-80 (106)
43 3cw1_E Small nuclear ribonucle 28.8 24 0.001 14.1 6.0 34 205-238 27-61 (92)
44 3i5t_A Aminotransferase; pyrid 23.2 31 0.0013 13.4 3.0 26 8-33 108-134 (476)
45 2yqg_A Desmoglein-2, HDGC; cad 23.0 28 0.0012 13.7 1.5 15 49-63 2-16 (123)
46 1ib8_A Conserved protein SP14. 22.5 32 0.0013 13.4 4.1 45 191-236 87-136 (164)
47 1b34_B Protein (small nuclear 21.5 33 0.0014 13.2 5.6 37 202-238 33-70 (118)
48 2pi2_E Replication protein A 1 20.7 34 0.0014 13.1 6.3 15 166-181 114-128 (142)
No 1
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=100.00 E-value=0 Score=407.24 Aligned_cols=236 Identities=28% Similarity=0.421 Sum_probs=211.4
Q ss_pred CCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHCCCHHHHH
Q ss_conf 9997049998164856899999997399997899982446783679985316633-334132235322400021013779
Q gi|254780868|r 10 NPYSFRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKG-NLYASLLLIDSISKDSLTLLSFAI 88 (252)
Q Consensus 10 ~p~~~~i~~~~~~~STn~~~~~~~~~~~~~~~~v~A~~Qt~GrGr~gr~W~s~~G-~l~~S~~~~~~~~~~~~~~l~~~~ 88 (252)
...++++++|+++||||++|++++.++ +++++|+|++||+||||+||+|+||+| +||||++++++.++..++.+++++
T Consensus 75 ~~~~~~i~~~~~idSTN~~a~~~~~~~-~~g~vviA~~QT~GRGR~GR~W~Sp~g~~l~~S~~l~~~~~~~~~~~lsl~~ 153 (321)
T 1bia_A 75 QLDGGSVAVLPVIDSTNQYLLDRIGEL-KSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVI 153 (321)
T ss_dssp TCCSSCEEECSSBSCHHHHHHTTGGGC-CTTCEEEESCBTTC---------CCTTSEEEEEEEEEECC-CCCTHHHHHHH
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCC-CCCCEEEECCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 357974999803682899999875068-9980999897688879998970689999889999826753644668889999
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC--CCCCCCC-CCCCCCC
Q ss_conf 999999999744542102462146506710221122223323225832676521544444642--2336532-1002367
Q gi|254780868|r 89 AVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPV--DTPYPVT-SLQREGG 165 (252)
Q Consensus 89 ~~ai~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~~--~~~~~~t-sL~~~~~ 165 (252)
|+|++++++++.. .+++||||||||+++||+||||+|+....+...+++||||+|++..+. +....++ ++.+.+.
T Consensus 154 ~~av~~al~~~~~--~~v~iKWPNDI~~~~kKi~GIL~E~~~~~~~~~~~viGiGiN~~~~~~~~~~~~~~~s~~~~~~~ 231 (321)
T 1bia_A 154 GIVMAEVLRKLGA--DKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESVVNQGWITLQEAGI 231 (321)
T ss_dssp HHHHHHHHHHTTC--TTCEEETTTEEEETTEEEEEEEEEEEC----CEEEEEEEEEECCC-----------CCCTTTTTC
T ss_pred HHHHHHHHHHHCC--CEEEEECCCCHHHCCCCHHEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 9999999998366--51676369733001101123433322035520379999765335677853310134577876276
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCEEEEEEEEEECCCCCEEEECCCCCEEEE
Q ss_conf 78978999877799999999873035564889999987523897799997993899999987698748999699989999
Q gi|254780868|r 166 CIDLKDIFSLLFQDVARVLDLWKKDTGREEIMNLWRCFACGIGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKGCVRQI 245 (252)
Q Consensus 166 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~gk~V~i~~~~~~~~G~~~gId~~G~L~i~~~~G~~~~i 245 (252)
.++++++++.++.++..++..|.+ .+|++++++|++++.++||.|++..+++.++|++.|||++|+|+|++ +|.++.+
T Consensus 232 ~~~r~~l~~~ll~~l~~~~~~~~~-~g~~~~~~~~~~~~~~~gk~V~v~~~~~~~~G~~~gId~~G~Liv~~-~g~~~~i 309 (321)
T 1bia_A 232 NLDRNTLAAMLIRELRAALELFEQ-EGLAPYLSRWEKLDNFINRPVKLIIGDKEIFGISRGIDKQGALLLEQ-DGIIKPW 309 (321)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH-HTTGGGHHHHHHHBTTTTSEEEEEETTEEEEEEEEEECTTSCEEEEE-TTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEEEEECCCCEEEEEE-CCEEEEE
T ss_conf 547677999999999999999986-59699999999863324986999979979999999999898599999-9909999
Q ss_pred EEEEE
Q ss_conf 96311
Q gi|254780868|r 246 FTGDI 250 (252)
Q Consensus 246 ~sGeI 250 (252)
++|||
T Consensus 310 ~sGeV 314 (321)
T 1bia_A 310 MGGEI 314 (321)
T ss_dssp SSCEE
T ss_pred EEEEE
T ss_conf 97799
No 2
>2cgh_A Biotin ligase; 1.8A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A
Probab=100.00 E-value=0 Score=392.54 Aligned_cols=230 Identities=28% Similarity=0.430 Sum_probs=204.9
Q ss_pred EEEEEEECCCCHHHHHHHHHHCCCC-CCEEEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCC-CCCCHHCCCHHHHHHH
Q ss_conf 0499981648568999999973999-97899982446783679985316633-3341322353-2240002101377999
Q gi|254780868|r 14 FRYEFFDTISSTNDECMKRALSGDL-GNLWIVASCQTAGRGRRDNKWISDKG-NLYASLLLID-SISKDSLTLLSFAIAV 90 (252)
Q Consensus 14 ~~i~~~~~~~STn~~~~~~~~~~~~-~~~~v~A~~Qt~GrGr~gr~W~s~~G-~l~~S~~~~~-~~~~~~~~~l~~~~~~ 90 (252)
.++++|++++|||+++++++.++.. +|++|+|++||+||||+||.|+||+| |||||+++++ ..+....+.+++++++
T Consensus 30 ~~l~~~~~~~STN~~l~~~~~~~~~~~g~vviA~~Qt~GrGR~gr~W~Sp~g~~l~~S~~~~~~~~~~~~~~~lsl~~~l 109 (268)
T 2cgh_A 30 RQLDVVAQTGSTNADLLARAASGADIDGVVLIAEHQTAGRGRHGRGWAATARAQIILSVGVRVVDVPVQAWGWLSLAAGL 109 (268)
T ss_dssp CEEEEESCBSCHHHHHHHHHHTTCCCBTEEEEESCBC------------CTTSEEEEEEEEECTTSCGGGTTHHHHHHHH
T ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 32799966877899999998769998987999894367888599831479999389987735677646677788999999
Q ss_pred HHHHHHHHHCC-CCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf 99999997445-421024621465067102211222233232258326765215444446422336532100236-7789
Q gi|254780868|r 91 AMRSVIASTLP-VGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPVDTPYPVTSLQREG-GCID 168 (252)
Q Consensus 91 ai~~~l~~~~~-~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~~~~~~~~tsL~~~~-~~~~ 168 (252)
+++++++.+.. .+.+++||||||||+++||+||||+|... .++|||||||++..|.+.+.++|||...+ ..++
T Consensus 110 av~~al~~l~~~~~~~~~iKWPNDi~~~~kKl~GIL~E~~~-----~~vvIGIGINv~~~p~~~~~~~tsL~~~~~~~~~ 184 (268)
T 2cgh_A 110 AVLDSVAPLIAVPPAETGLKWPNDVLARGGKLAGILAEVAQ-----PFVVLGVGLNVTQAPEEVDPDATSLLDLGVAAPD 184 (268)
T ss_dssp HHHHHHGGGSSSCGGGEEEETTTEEEETTEEEEEEEEEEET-----TEEEEEEEEESCCC--------CCTGGGTCSSCC
T ss_pred HHHHHHHHHCCCCCCCEEEECCCHHHHHCCCEEEEEEEEEC-----CEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 99987777514876515884682565430112898777302-----4489999885765853554310015554454357
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECC-EEEEEEEEEECCCCCEEEECCCCCEEEEEE
Q ss_conf 7899987779999999987303556488999998752389779999799-389999998769874899969998999996
Q gi|254780868|r 169 LKDIFSLLFQDVARVLDLWKKDTGREEIMNLWRCFACGIGDLITIKLSY-GSILGRFVGVDDFGYLLLEEKKGCVRQIFT 247 (252)
Q Consensus 169 ~~~l~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~gk~V~i~~~~-~~~~G~~~gId~~G~L~i~~~~G~~~~i~s 247 (252)
++++++.++.++..++..|.+ ++..++++|++++.++|++|++...+ ..++|++.|||++|+|+|++ +|.++.|++
T Consensus 185 ~~~l~~~l~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~G~~~gId~~G~L~l~~-~g~~~~i~s 261 (268)
T 2cgh_A 185 RNRIASRLLRELEARIIQWRN--ANPQLAADYRARSLTIGSRVRVELPGGQDVVGIARDIDDQGRLCLDV-GGRTVVVSA 261 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHTBSSTTSEEEEEETTTEEEEEEEEEECTTSCEEEEE-TTEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCEEEEEE-CCCEEEEEE
T ss_conf 889999999999999999862--37077999999986769958999679939999999999798299999-994999996
Q ss_pred EEEC
Q ss_conf 3110
Q gi|254780868|r 248 GDIF 251 (252)
Q Consensus 248 GeI~ 251 (252)
|||.
T Consensus 262 GeV~ 265 (268)
T 2cgh_A 262 GDVV 265 (268)
T ss_dssp SCCE
T ss_pred ECEE
T ss_conf 2689
No 3
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=100.00 E-value=0 Score=386.21 Aligned_cols=223 Identities=25% Similarity=0.436 Sum_probs=197.3
Q ss_pred EEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHH
Q ss_conf 04999816485689999999739999789998244678367998531663333413223532240002101377999999
Q gi|254780868|r 14 FRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMR 93 (252)
Q Consensus 14 ~~i~~~~~~~STn~~~~~~~~~~~~~~~~v~A~~Qt~GrGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~ 93 (252)
.+++|||++||||+++++. ..+++++|+|++||+||||+||.|+||+|+||||+++++. +......+++++|++++
T Consensus 3 ~~i~~~~~~~STn~~~k~~---~~~~~~~v~a~~Qt~GrGR~gr~W~s~~g~l~~S~~~~~~-~~~~~~~l~~~~~lai~ 78 (233)
T 2eay_A 3 KNLIWLKEVDSTQERLKEW---NVSYGTALVADRQTKGRGRLGRKWLSQEGGLYFSFLLNPK-EFENLLQLPLVLGLSVS 78 (233)
T ss_dssp CEEEEEEEBSCHHHHHHHS---CCCTTEEEEESCBCC------------CCEEEEEEEECTT-TCCCTTHHHHHHHHHHH
T ss_pred CCEEEECCCCCHHHHHHHC---CCCCCCEEEECCCCCCCCCCCCEEECCCCCCEEEECCCCC-CHHHHHHHHHHHHHHHH
T ss_conf 7679967878689999854---9999919998976878798998611899984563122642-12336789999999999
Q ss_pred HHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC--CCCCCCCCCCCCC-CCCCCHH
Q ss_conf 999974454210246214650671022112222332322583267652154444464--2233653210023-6778978
Q gi|254780868|r 94 SVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCP--VDTPYPVTSLQRE-GGCIDLK 170 (252)
Q Consensus 94 ~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~--~~~~~~~tsL~~~-~~~~~~~ 170 (252)
++|+.+.+ .+++||||||||+++||+||||+|... ..+++|||||++..+ ++.+.++|||... +..++++
T Consensus 79 ~~l~~~~~--~~v~iKWPNDI~~~~kKi~GIL~E~~~-----~~~viGiGin~~~~~~~~~~~~~atsL~~~~~~~~~~~ 151 (233)
T 2eay_A 79 EALEEITE--IPFSLKWPNDVYFQEKKVSGVLCELSK-----DKLIVGIGINVNQREIPEEIKDRATTLYEITGKDWDRK 151 (233)
T ss_dssp HHHHHHHC--CCCEEETTTEEEETTEEEEEEEEEEET-----TEEEEEEEEECSCCCCCTTTTTTBCCHHHHHSSCCCHH
T ss_pred HHHHHHCC--CCCCEECCCHHEECCCCCEEEEEECEE-----EEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 87877456--664061784523678862344000103-----57999999986067676113444337888648865789
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCEEEEEEEEEECCCCCEEEECCCCCEEEEEEEEE
Q ss_conf 99987779999999987303556488999998752389779999799389999998769874899969998999996311
Q gi|254780868|r 171 DIFSLLFQDVARVLDLWKKDTGREEIMNLWRCFACGIGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKGCVRQIFTGDI 250 (252)
Q Consensus 171 ~l~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~gk~V~i~~~~~~~~G~~~gId~~G~L~i~~~~G~~~~i~sGeI 250 (252)
++++.++.++..++..|.+ .+|+.++++|+++++++||.|++. +++.++|+++|||++|+|+|++++| ++.|++|||
T Consensus 152 ~l~~~l~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~gq~V~v~-~~~~i~G~~~GId~~G~Lil~~~~g-~~~i~sGev 228 (233)
T 2eay_A 152 EVLLKVLKRISENLKKFKE-KSFKEFKGKIESKMLYLGEEVKLL-GEGKITGKLVGLSEKGGALILTEEG-IKEILSGEF 228 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SCGGGTHHHHHHHBTTTTSEEEET-TEEEEEEEEEEECTTSCEEEEETTE-EEEECSCCE
T ss_pred HHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHCCCEEEEC-CCCEEEEEEEEECCCCCEEEEECCC-EEEEEEEEE
T ss_conf 9999999999999999886-688999999999985479889996-6998999999998999789998998-699999789
No 4
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=100.00 E-value=0 Score=379.21 Aligned_cols=223 Identities=31% Similarity=0.453 Sum_probs=194.3
Q ss_pred CCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHH
Q ss_conf 99970499981648568999999973999978999824467836799853166333341322353224000210137799
Q gi|254780868|r 10 NPYSFRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIA 89 (252)
Q Consensus 10 ~p~~~~i~~~~~~~STn~~~~~~~~~~~~~~~~v~A~~Qt~GrGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~ 89 (252)
..++.+++||++++|||++|++. ..+++++|+|++||+||||+||+|+||+||||||++++++.+....+.++++++
T Consensus 7 ~~~g~~i~~~~~~~STn~~a~~~---~~~~~~~v~A~~Qt~GrGR~gr~W~sp~G~l~~S~~~~~~~~~~~~~~l~~~~~ 83 (235)
T 2dxu_A 7 SIIGRRVIYFQEITSTNEFAKTS---YLEEGTVIVADKQTMGHGALNRKWESPEGGLWLSIVLSPKVPQKDLPKIVFLGA 83 (235)
T ss_dssp SSTTSEEEEESSBSCHHHHHHHS---CCCTTCEEEESCBSSCBCGGGCBCCCCTTSEEEEEEECCCSCGGGGGGHHHHHH
T ss_pred CHHCCEEEEECCCCCHHHHHHHC---CCCCCEEEEECCCCCCCCCCCCEEECCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 03318699968778789999852---999983999896477878899844679997079865024576778999999999
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 9999999974454210246214650671022112222332322583267652154444464223365321002-367789
Q gi|254780868|r 90 VAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPVDTPYPVTSLQR-EGGCID 168 (252)
Q Consensus 90 ~ai~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~~~~~~~~tsL~~-~~~~~~ 168 (252)
++++++++++ +.+++||||||||+++||+||||+|... .++|||||||+++.+ +.++||+.. .+..++
T Consensus 84 ~ai~~~l~~~---~~~~~iKWPNDi~~~~kKl~GIL~E~~~-----~~~viGiGiNl~~~~---~~~~tsl~~~~~~~~~ 152 (235)
T 2dxu_A 84 VGVVETLKEF---SIDGRIKWPNDVLVNYKKIAGVLVEGKG-----DKIVLGIGLNVNNKV---PNGATSMKLELGSEVP 152 (235)
T ss_dssp HHHHHHHHHT---TCCCEEETTTEEEETTEEEEEEEEEECS-----SCEEEEEEECSSSCC---CTTBCCHHHHHTSCCC
T ss_pred HHHHHHHHHC---CCCEEEECCCHHEECCCEEEEEEEEEEC-----CEEEEEEEEECCCCC---CCCHHHHHHHHHHCCC
T ss_conf 9987655521---7751587684021056411366554204-----569999977658779---9634119988620468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCEEEEEEEEEECCCCCEEEECCCCCEEEEEEE
Q ss_conf 78999877799999999873035564889999987523897799997993899999987698748999699989999963
Q gi|254780868|r 169 LKDIFSLLFQDVARVLDLWKKDTGREEIMNLWRCFACGIGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKGCVRQIFTG 248 (252)
Q Consensus 169 ~~~l~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~gk~V~i~~~~~~~~G~~~gId~~G~L~i~~~~G~~~~i~sG 248 (252)
++++++.++.++..++..|.++ +++ .. .|...+.++|+.|++. .++.++|++.|||++|+|+|++++|+++.|++|
T Consensus 153 ~~~l~~~l~~~l~~~~~~~~~~-~~~-~~-~~~~~~~~~~~~v~~~-~~~~~~G~~~gi~~~G~L~i~~~~G~~~~i~sG 228 (235)
T 2dxu_A 153 LLSVFRSLITNLDRLYLNFLKN-PMD-IL-NLVRDNMILGVRVKIL-GDGSFEGIAEDIDDFGRLIIRLDSGEVKKVIYG 228 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-TTH-HH-HHHHHHBCCSSEEEC-----CCEEEEEEECTTSCEEEECTTSCEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHH-HH-HHHHHHHHCCCEEEEE-CCCEEEEEEEEECCCCEEEEEECCCCEEEEEEE
T ss_conf 6899999999999999999862-588-99-9998886549689993-798799999999999879999899979999998
Q ss_pred EE
Q ss_conf 11
Q gi|254780868|r 249 DI 250 (252)
Q Consensus 249 eI 250 (252)
||
T Consensus 229 eV 230 (235)
T 2dxu_A 229 DV 230 (235)
T ss_dssp SC
T ss_pred EE
T ss_conf 89
No 5
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=0 Score=374.10 Aligned_cols=224 Identities=28% Similarity=0.451 Sum_probs=194.0
Q ss_pred EEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHH
Q ss_conf 49998164856899999997399997899982446783679985316633334132235322400021013779999999
Q gi|254780868|r 15 RYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRS 94 (252)
Q Consensus 15 ~i~~~~~~~STn~~~~~~~~~~~~~~~~v~A~~Qt~GrGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~ 94 (252)
++.||++++||||+|++++.++ +.+++|+|++||+||||+||.|+||+|+||+|++++++. .....+++++++++++
T Consensus 2 ~i~~~~~v~STn~~a~~~~~~~-~~~~~v~a~~Qt~GRGR~gr~W~Sp~g~l~~S~~~~~~~--~~~~~l~l~~~~ai~~ 78 (237)
T 2ej9_A 2 EIIHLSEIDSTNDYAKELAKEG-KRNFIVLADKQNNGKGRWGRVWYSDEGGLYFSMVLDSKL--YNPKVINLLVPICIIE 78 (237)
T ss_dssp EEEEESCBSCHHHHHHHHHHTT-CCSEEEEESCBSSCBCGGGCBCCCCTTSEEEEEEEETTS--SCHHHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCEEECCCCCCEEEECCCCCC--CCHHHHHHHHHHHHHH
T ss_conf 4899289777899999987668-988699989258887989986178999843444143244--6855623677899888
Q ss_pred HHHHHCCCCCEEEEEECCCEEE----ECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC-CCCCCCCCCCCC-CCCCC
Q ss_conf 9997445421024621465067----10221122223323225832676521544444642-233653210023-67789
Q gi|254780868|r 95 VIASTLPVGTDVKIKWPNDILV----FQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPV-DTPYPVTSLQRE-GGCID 168 (252)
Q Consensus 95 ~l~~~~~~~~~~~iKWPNDi~~----~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~~-~~~~~~tsL~~~-~~~~~ 168 (252)
+++.+. +.+++||||||||+ ++||+||||+|... .++|||||||++..++ +...++|||... +..++
T Consensus 79 ~l~~~~--~~~~~lKWPNDi~~~~~~~~kKi~GIL~E~~~-----~~~viGiGINvn~~~~~~~~~~atsL~~~~~~~~~ 151 (237)
T 2ej9_A 79 VLKNYV--DKELGLKFPNDIMVKVNDNYKKLGGILTELTD-----DYMIIGIGINVNNQIRNEIREIAISLKEITGKELD 151 (237)
T ss_dssp HHTTTC--CSCEEEETTTEEEEEETTEEEEEEEEEEEECS-----SEEEEEEEECSSSCCCGGGGGTBCCHHHHHSSCCC
T ss_pred HHHHHC--CCCCEEECCCCEEEEECCCCCEEEEEEEEECC-----CEEEEEEEEECCCCCCCCCCCCCCCHHHHHCCCCC
T ss_conf 776531--44403304663798505788669999863047-----70799999962677872013554558875387679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHCCCCEEEEEECC-EEEEEEEEEECCCCCEEEECCCCCEEEE
Q ss_conf 78999877799999999873035564--88999998752389779999799-3899999987698748999699989999
Q gi|254780868|r 169 LKDIFSLLFQDVARVLDLWKKDTGRE--EIMNLWRCFACGIGDLITIKLSY-GSILGRFVGVDDFGYLLLEEKKGCVRQI 245 (252)
Q Consensus 169 ~~~l~~~l~~~l~~~~~~~~~~~~~~--~i~~~~~~~~~~~gk~V~i~~~~-~~~~G~~~gId~~G~L~i~~~~G~~~~i 245 (252)
+++++..++..+..+++.|.+. +++ .++++|++++.++||.|++...+ +.++|+++|||++|.| |++++| ++.|
T Consensus 152 ~~~l~~~l~~~l~~~~~~~~~~-~~~~~~i~~~~~~~~~~~g~~v~v~~~~~~~~~G~~~gI~~~G~L-l~~~~g-~~~i 228 (237)
T 2ej9_A 152 KVEILSNFLKTFESYLEKLKNK-EIDDYEILKKYKKYSITIGKQVKILLSNNEIITGKVYDIDFDGIV-LGTEKG-IERI 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHBSSTTCEEEEEETTSCEEEEEEEEECSSEEE-EEETTE-EEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEEEEECCCCCE-EEECCC-EEEE
T ss_conf 9999999999999999999876-998699999999877667998999979991999999999999829-997998-7999
Q ss_pred EEEEEC
Q ss_conf 963110
Q gi|254780868|r 246 FTGDIF 251 (252)
Q Consensus 246 ~sGeI~ 251 (252)
+||||+
T Consensus 229 ~sGdv~ 234 (237)
T 2ej9_A 229 PSGICI 234 (237)
T ss_dssp EGGGEE
T ss_pred EEECEE
T ss_conf 842579
No 6
>3bfm_A Biotin protein ligase-like protein of unknown function; YP_612389.1, structural genomics, joint center for structural genomics, JCSG; HET: 2PE; 1.70A {Silicibacter SP}
Probab=100.00 E-value=4.2e-45 Score=299.12 Aligned_cols=224 Identities=17% Similarity=0.164 Sum_probs=191.4
Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHH
Q ss_conf 17999704999816485689999999739999789998244678367998531663333413223532240002101377
Q gi|254780868|r 8 CQNPYSFRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFA 87 (252)
Q Consensus 8 ~~~p~~~~i~~~~~~~STn~~~~~~~~~~~~~~~~v~A~~Qt~GrGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~ 87 (252)
+..|..++.+-.+...||++.|.+ .|++|||+..+.|.||+|+||||++++|+.+....+.++++
T Consensus 6 ~~~p~~~~~~~~~~~~~~~~~a~~---------------~a~~G~~~G~~~w~s~~g~L~~Slvl~P~~~~~~~~~l~l~ 70 (235)
T 3bfm_A 6 ITFPPLMTGEAAGPGQDPFDLACQ---------------KAELGVDAGLVVYELGTDVLRAALVLAPEVPLAKAMAMLPV 70 (235)
T ss_dssp CCCCTTCEEEECCTTCCHHHHHHH---------------HHHTTCCTTEEEEEECSSEEEEEEEECCSSCHHHHTTHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHH---------------HHHHCCCCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 579986212215778998999999---------------99817998708997799988999996789999999889999
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCC--CCCEEEEEECCCCCCCCCCCCC-CCCCCCCCC-
Q ss_conf 999999999974454210246214650671022112222332322--5832676521544444642233-653210023-
Q gi|254780868|r 88 IAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLK--NGLQAVVVGIGLNVKHCPVDTP-YPVTSLQRE- 163 (252)
Q Consensus 88 ~~~ai~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~--~~~~~~viGiGiNi~~~~~~~~-~~~tsL~~~- 163 (252)
+++|++++|+.+.+.+.+++||||||||+++||+||||+|+.... ....++|||||||++..++..+ ..+|||.++
T Consensus 71 ~~vAv~~al~~~~~~~v~v~lKWPNDIli~gkKl~GILiE~~~~~~~~~~~~vviGiGiNv~~~~~~~~~~~~tsL~~~~ 150 (235)
T 3bfm_A 71 CGVGFQNALGALAPPEVAVHLDWNGALRINGARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEGDGGETPDETALYAEG 150 (235)
T ss_dssp HHHHHHHHHHHHSCTTCCEEECTTSEEEETTEEEEEEEEEESCCCTTSCCSCEEEEEEEESSCCCSSCCCCCSCCGGGTT
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf 99999999998669774158627983597786310688862136776655389999775047787654445426577852
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCEEEEEEEEEECCCCCEEEECCCCCEE
Q ss_conf 67789789998777999999998730355648899999875238977999979938999999876987489996999899
Q gi|254780868|r 164 GGCIDLKDIFSLLFQDVARVLDLWKKDTGREEIMNLWRCFACGIGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKGCVR 243 (252)
Q Consensus 164 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~gk~V~i~~~~~~~~G~~~gId~~G~L~i~~~~G~~~ 243 (252)
+..++++++++.++.++..+++.|.+ .+|++++++|++++.++||.|.+. ..+|++.|||++|+|+|++++| ++
T Consensus 151 ~~~~~~~~ll~~l~~~l~~~~~~~~~-~g~~~i~~~w~~~~~~~g~~v~~~----~~~G~~~GId~~G~Llv~~~~g-t~ 224 (235)
T 3bfm_A 151 CADVAAPRLLESWARHCLHWINRWDE-GELETIHGEWRGLAHGMGEARTEA----GRSGTFLGVDEDFGMLLRDETT-TH 224 (235)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHBTTTTSEEEET----TEEEEEEEECTTCCEEEECSSC-EE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHCCCEEEEE----CCCEEEEEECCCCEEEEEECCE-EE
T ss_conf 99999999999999999997555442-188999999997554459879995----1749999999997799998992-89
Q ss_pred EEEEEEECC
Q ss_conf 999631109
Q gi|254780868|r 244 QIFTGDIFT 252 (252)
Q Consensus 244 ~i~sGeI~~ 252 (252)
.|+-++|+.
T Consensus 225 ~Isl~~~l~ 233 (235)
T 3bfm_A 225 LIPLTTVLV 233 (235)
T ss_dssp EECGGGGSC
T ss_pred EEECCCCCC
T ss_conf 998874455
No 7
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=97.34 E-value=0.0079 Score=35.81 Aligned_cols=152 Identities=12% Similarity=0.082 Sum_probs=87.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEE----CCCCCCCCCC
Q ss_conf 367998531663333413223532240002101377999999999974454210246214650671----0221122223
Q gi|254780868|r 52 RGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVF----QRKIAGILIE 127 (252)
Q Consensus 52 rGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iKWPNDi~~~----~kKi~GIL~E 127 (252)
|-+.|..=+..+|++.+|++.+.+... . -...-.++++++++ |+++.+.=.||+.++ +|||+|.=.-
T Consensus 70 R~sGGGaV~hd~g~l~~s~i~~~~~~~-----~-~~~~~~i~~aL~~l---Gi~a~~~~r~di~~~~~~~gkKIsGsAq~ 140 (337)
T 3a7r_A 70 RSSGGGAVFHDLGNTCFTFMAGKPEYD-----K-TISTSIVLNALNAL---GVSAEASGRNDLVVKTVEGDRKVSGSAYR 140 (337)
T ss_dssp CSSCSCCEEECTTEEEEEEEEETTTCC-----H-HHHHHHHHHHHHHT---TCCEEEETTTEEEECCTTSCEEEEEEEEE
T ss_pred EECCCCEEEECCCCEEEEEEECCCCCC-----H-HHHHHHHHHHHHHH---CCCEEECCCCCCEECCCCCCEEEEEEEEE
T ss_conf 827972599789987999985675107-----8-99999999999981---97537778776200367898189987499
Q ss_pred CCCCCCCCEEEEEECCCCC-------CCCCCC--------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 3232258326765215444-------446422--------3365321002367789789998777999999998730---
Q gi|254780868|r 128 TLNLKNGLQAVVVGIGLNV-------KHCPVD--------TPYPVTSLQREGGCIDLKDIFSLLFQDVARVLDLWKK--- 189 (252)
Q Consensus 128 ~~~~~~~~~~~viGiGiNi-------~~~~~~--------~~~~~tsL~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--- 189 (252)
...+.-....-+-+-.|+ +..++. .....|+|.+....++.+++...++..+...+..-..
T Consensus 141 -~~~~~~l~hgtll~d~d~~~l~~~L~~~~~k~~~k~~~Sv~~rVtnL~e~~~~~~~e~~~~~l~~~f~~~~~~~~~~~~ 219 (337)
T 3a7r_A 141 -ETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEI 219 (337)
T ss_dssp -ECSSEEEEEEEEESSCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCTTCCHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred -EECCEEEEEEEEECCCCHHHHHHHCCCCCHHHHHCCCCCHHHCCEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf -9999999986863279989999861999221244056744624344999479999999999999999998465563598
Q ss_pred -----CCCCH---HHHHHHHHHHHCCCCEEEE
Q ss_conf -----35564---8899999875238977999
Q gi|254780868|r 190 -----DTGRE---EIMNLWRCFACGIGDLITI 213 (252)
Q Consensus 190 -----~~~~~---~i~~~~~~~~~~~gk~V~i 213 (252)
..... ...+.|....+..|+.=.+
T Consensus 220 l~~~e~~~~~~~~~~~~~y~s~eW~yg~~P~f 251 (337)
T 3a7r_A 220 ISPNKTPDLPNFAETFARQSSWEWNFGQAPAF 251 (337)
T ss_dssp ECTTSCCCCTTHHHHHHHHHSHHHHTTTSCCE
T ss_pred ECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 26778652588999998728903227889755
No 8
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, structural genomics, protein structure initiative, PSI-2; 2.04A {Streptococcus agalactiae COH1} SCOP: d.104.1.3
Probab=97.26 E-value=0.00081 Score=41.98 Aligned_cols=167 Identities=14% Similarity=0.100 Sum_probs=89.5
Q ss_pred CCCCEEEEEEECCCCHH---HH-----HHHHHHCCC---------CCCEEEEECCCCC-------------------CCC
Q ss_conf 99970499981648568---99-----999997399---------9978999824467-------------------836
Q gi|254780868|r 10 NPYSFRYEFFDTISSTN---DE-----CMKRALSGD---------LGNLWIVASCQTA-------------------GRG 53 (252)
Q Consensus 10 ~p~~~~i~~~~~~~STn---~~-----~~~~~~~~~---------~~~~~v~A~~Qt~-------------------GrG 53 (252)
.+-|..+......+|+. .. +.+.+..+. .++++++-.+|+. =|=
T Consensus 9 ~~~p~~~~~~~~~~~~d~~~~~a~~e~ll~~v~~~~~~~il~~w~~~ptVvlG~~q~~~p~~e~~~~~l~~~Gi~vvrR~ 88 (288)
T 2p0l_A 9 AQLPVSIFKDYVTDAQDAEKPFIWTEVFLREINRSNQEIILHIWPMTKTVILGMLDRELPHLELAKKEIISRGYEPVVRN 88 (288)
T ss_dssp TTSCEEEEECCBCSGGGTTHHHHHHHHHHHHHHHSCSCEEEEECCBSSEEEECTTGGGCTTHHHHHHHHHTTTCEEEECT
T ss_pred HHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf 52738999731587546657668999999984046899789995479979989866657308887999998799789965
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCH-HCCCHHHHHHHHHHHHHHHHCCCCCEEEEEE--------CCCEEEECCCCCCC
Q ss_conf 79985316633334132235322400-0210137799999999997445421024621--------46506710221122
Q gi|254780868|r 54 RRDNKWISDKGNLYASLLLIDSISKD-SLTLLSFAIAVAMRSVIASTLPVGTDVKIKW--------PNDILVFQRKIAGI 124 (252)
Q Consensus 54 r~gr~W~s~~G~l~~S~~~~~~~~~~-~~~~l~~~~~~ai~~~l~~~~~~~~~~~iKW--------PNDi~~~~kKi~GI 124 (252)
+.|..=+-.+|+|.+|++++...... .....--.++-.+.++++.+ |+++.... .|||.+++||++|.
T Consensus 89 sGGgaV~~d~G~l~~s~i~p~~~~~~~~i~~~y~~~~~~i~~aL~~l---Gi~a~~~~~~~~~c~g~~Dl~v~grKi~G~ 165 (288)
T 2p0l_A 89 FGGLAVVADEGILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSDF---YQPIEHFEVETSYCPGKFDLSINGKKFAGL 165 (288)
T ss_dssp TCCSCEEESTTEEEEEEEEESCC---CCHHHHHHHHHHHHHHHTTTS---CSCCEECCCTTSSSCCTTCEEETTEEEEEE
T ss_pred CCCCEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCCEEECCEEEEEE
T ss_conf 89872898899559999961664457998999999999999999974---985178336787785755076888789998
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCC-----------------CCC--------CCCCCCCCCCC-CCCCCHHHHHHHHHH
Q ss_conf 2233232258326765215444446-----------------422--------33653210023-677897899987779
Q gi|254780868|r 125 LIETLNLKNGLQAVVVGIGLNVKHC-----------------PVD--------TPYPVTSLQRE-GGCIDLKDIFSLLFQ 178 (252)
Q Consensus 125 L~E~~~~~~~~~~~viGiGiNi~~~-----------------~~~--------~~~~~tsL~~~-~~~~~~~~l~~~l~~ 178 (252)
=- ... .. .++....|.++.. +.. .+...|+|.+. +..++.+++...++.
T Consensus 166 AQ-rr~--~~--~~l~hgtllv~~d~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~vtsL~~~lg~~~t~eev~~~l~~ 240 (288)
T 2p0l_A 166 AQ-RRI--KN--GIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIMANLSDLLDCPMTVEDVIDRMLI 240 (288)
T ss_dssp EE-EEE--TT--EEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCCTTSBCCHHHHTTCCCCHHHHHHHHHH
T ss_pred EE-EEE--CC--EEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEEEHHHHCCCCCCHHHHHHHHHH
T ss_conf 89-998--99--89999999985788999999877777411443343357875520024599972999999999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780868|r 179 DVARVL 184 (252)
Q Consensus 179 ~l~~~~ 184 (252)
.+....
T Consensus 241 ~~~~~~ 246 (288)
T 2p0l_A 241 SLKQVG 246 (288)
T ss_dssp HHHHHT
T ss_pred HHHHHC
T ss_conf 999865
No 9
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=97.22 E-value=0.0076 Score=35.93 Aligned_cols=153 Identities=14% Similarity=0.106 Sum_probs=85.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEC-CCCCCCCCCCCCC
Q ss_conf 679985316633334132235322400021013779999999999744542102462146506710-2211222233232
Q gi|254780868|r 53 GRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQ-RKIAGILIETLNL 131 (252)
Q Consensus 53 Gr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iKWPNDi~~~~-kKi~GIL~E~~~~ 131 (252)
=..|..=+..+|++.+|++.+.+.. . . .-..-.+++++.+... +..+.....|||.+++ +||+|.=.- ...
T Consensus 74 ~tGGGaVyhD~G~l~~s~i~~~~~~-~---~--~~~~~~i~~al~~~~~-~l~~~~~~rnDi~v~g~~KisG~Aq~-~~~ 145 (347)
T 2e5a_A 74 RSGGGTVYHDMGNINLTFFTTKKKY-D---R--MENLKLVVRALKAVHP-HLDVQATKRFDLLLDGQFKISGTASK-IGR 145 (347)
T ss_dssp SSCSCCEEECTTEEEEEEEECGGGC-C---H--HHHHHHHHHHHHHHST-TCCEEECTTSCEEETTTEEEECEEEE-ECS
T ss_pred ECCCCEEEECCCCEEEEEEECCCCC-C---H--HHHHHHHHHHHHHHHH-HCCEEECCCCCEEECCCCEEEEEEEE-EEC
T ss_conf 2698349953995899999637778-9---9--9999999999999876-46647705776385488289988999-878
Q ss_pred CCCCEEEEEECCCCC-------CCCCCCC--------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-------H
Q ss_conf 258326765215444-------4464223--------36532100236778978999877799999999873-------0
Q gi|254780868|r 132 KNGLQAVVVGIGLNV-------KHCPVDT--------PYPVTSLQREGGCIDLKDIFSLLFQDVARVLDLWK-------K 189 (252)
Q Consensus 132 ~~~~~~~viGiGiNi-------~~~~~~~--------~~~~tsL~~~~~~~~~~~l~~~l~~~l~~~~~~~~-------~ 189 (252)
+.-....-+=+-.++ ..+++.+ +..+++|.+....++.+++...++..+...+..-. .
T Consensus 146 ~~~l~hGTll~d~d~~~l~~~L~~~~~kl~~kgv~Sv~srV~nL~e~~~~~~~e~~~~al~~~f~~~~~~~~~~~~l~~~ 225 (347)
T 2e5a_A 146 NAAYHHCTLLCGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQIDNHIHLINPT 225 (347)
T ss_dssp SCEEEEEEEESSCCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHHHHHHHHHHHHHTCCCCCEEECTT
T ss_pred CEEEEEEEEEECCCHHHHHHHHCCCHHHHHHHCCCCCHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCHH
T ss_conf 98999868984388899998718983675653003426424058995899999999999999999984887622120767
Q ss_pred C-C---CCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 3-5---5648899999875238977999
Q gi|254780868|r 190 D-T---GREEIMNLWRCFACGIGDLITI 213 (252)
Q Consensus 190 ~-~---~~~~i~~~~~~~~~~~gk~V~i 213 (252)
+ . ......++|....+..|+.-.+
T Consensus 226 e~~~~~~i~~~~~ky~s~eW~yG~sP~f 253 (347)
T 2e5a_A 226 DETVFPGINSKAIELQTWEWIYGKTPKF 253 (347)
T ss_dssp CTTTSTTHHHHHHHHHSHHHHTTTCCCE
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 7999999999999867600136789986
No 10
>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} SCOP: d.224.1.3 d.104.1.3
Probab=97.05 E-value=0.012 Score=34.67 Aligned_cols=138 Identities=16% Similarity=0.092 Sum_probs=82.0
Q ss_pred CCEEEEECCCCC-----------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 978999824467-----------------836799853166333341322353224000210137799999999997445
Q gi|254780868|r 39 GNLWIVASCQTA-----------------GRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLP 101 (252)
Q Consensus 39 ~~~~v~A~~Qt~-----------------GrGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~ 101 (252)
.|++++-.+|.. -|=+.|..=+..+|++.+|++.+.+..... .--..+-.++++++++
T Consensus 50 ~p~VviG~~Q~~~~Evn~~~~~~~gi~vvRR~sGGGaVyhD~g~l~~s~i~~~~~~~~~---~y~~~~~~ii~aL~~l-- 124 (341)
T 1vqz_A 50 KPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYHDLNNLNYTIISKEDENKAF---DFKSFSTPVINTLAQL-- 124 (341)
T ss_dssp SSEEEECTTCCGGGTBCHHHHHHHTCEEEECSSCSCCEEECTTEEEEEEEEECCTTCCC---SHHHHHHHHHHHHHHT--
T ss_pred CCEEEECCCCCHHHHHCHHHHHHCCCCEEEECCCCCEEEECCCCEEEEEEECCCCCCHH---HHHHHHHHHHHHHHHH--
T ss_conf 99899898898377668899987699399982899749989996799999737665221---1999999999999973--
Q ss_pred CCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCC-----------CCCC--------CCCCCCCCCC
Q ss_conf 42102462146506710221122223323225832676521544444-----------6422--------3365321002
Q gi|254780868|r 102 VGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKH-----------CPVD--------TPYPVTSLQR 162 (252)
Q Consensus 102 ~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~-----------~~~~--------~~~~~tsL~~ 162 (252)
|.++.+.=.|||.++++|++|.=.-.. .. .++..--+.+.. +++. .....|+|..
T Consensus 125 -Gi~a~~~~rnDi~v~g~KIsG~A~~~~---~~--~~l~hgtll~~~d~~~l~~~L~~~~~k~~~k~~~Sv~~rvtnl~~ 198 (341)
T 1vqz_A 125 -GVKAEFTGRNDLEIDGKKFCGNAQAYI---NG--RIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIIN 198 (341)
T ss_dssp -TCCEEEETTTEEEETTEEEEEEEEEEE---TT--EEEEEEEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGG
T ss_pred -CCCCEEECCCCCEECCEEEEEEEEEEE---CC--EEEEECEEECCCCHHHHHHHHCCCCCCHHHHCCCCHHHHHEEHHH
T ss_conf -976377246882488868643567985---88--689942000378999999883899402023056422655230897
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf -3677897899987779999999987
Q gi|254780868|r 163 -EGGCIDLKDIFSLLFQDVARVLDLW 187 (252)
Q Consensus 163 -~~~~~~~~~l~~~l~~~l~~~~~~~ 187 (252)
.+..++.+++...+++.+...+...
T Consensus 199 ~l~~~~~~e~~~~~l~~~f~~~~~~~ 224 (341)
T 1vqz_A 199 ELPKKITVEKFRDLLLEYMKKEYPEM 224 (341)
T ss_dssp TCSSCCCHHHHHHHHHHHHHHHCTTC
T ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 75999999999999999999973888
No 11
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=97.01 E-value=0.0013 Score=40.61 Aligned_cols=171 Identities=16% Similarity=0.101 Sum_probs=93.8
Q ss_pred HHHHHCCCCCCEEEEEEECCCC--H-----H---HH-HHHHHHCCCC---------CCEEEEECCCCC------------
Q ss_conf 1247517999704999816485--6-----8---99-9999973999---------978999824467------------
Q gi|254780868|r 3 SNLSECQNPYSFRYEFFDTISS--T-----N---DE-CMKRALSGDL---------GNLWIVASCQTA------------ 50 (252)
Q Consensus 3 ~~l~~~~~p~~~~i~~~~~~~S--T-----n---~~-~~~~~~~~~~---------~~~~v~A~~Qt~------------ 50 (252)
+-|.+.+.-.+||+. |+... . | |+ +.+...++.. +|++++-..|+.
T Consensus 4 ~~~~~~~~~~~wr~i--d~~~~~p~~d~~~nmA~deaLl~~~~~~~~~p~lrlw~~~ptv~lG~~q~~~~~~e~~l~~~~ 81 (288)
T 2p5i_A 4 SLLLQQHLSQPWRFL--DHTSFGPTFQALQSFAYDDTLCTSIGKSQSPPTLRAWVHHNTVVLGIQDSRLPQIKAGIEALK 81 (288)
T ss_dssp ----------CCEEE--EESSCCTTSCHHHHHHHHHHHHHHHTTTSSCCEEEEECCSSEEEEEHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEE--ECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHH
T ss_conf 777788751988998--478877675877876999999999746899988999954998998987667854777899999
Q ss_pred -------CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEE--------CCCEE
Q ss_conf -------836799853166333341322353224000210137799999999997445421024621--------46506
Q gi|254780868|r 51 -------GRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKW--------PNDIL 115 (252)
Q Consensus 51 -------GrGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iKW--------PNDi~ 115 (252)
=|-+.|..=+..+|+|.+|++++.+.+.. ....--.++-++.++++.+ |+++..+- +|||.
T Consensus 82 ~~gi~vvRR~tGGgaV~hd~G~l~~sli~~~~~~~~-~~~~y~~~~~~i~~~l~~l---Gi~a~~~~~~~~~~~g~~Dl~ 157 (288)
T 2p5i_A 82 GFQHDVIVRNSGGLAVVLDSGILNLSLVLKEEKGFS-IDDGYELMYELICSMFQDH---REQIEAREIVGSYCPGSYDLS 157 (288)
T ss_dssp HTTCEEEEESSCCCCEEECTTEEEEEEEEECCTTCC-HHHHHHHHHHHHHHHTC------CCCEECCCTTSSSCCTTCEE
T ss_pred HCCCCEEEEECCCCEEEECCCCEEEEEEEECCCCCC-HHHHHHHHHHHHHHHHHHC---CCCCEECCCCCCCCCCCCCEE
T ss_conf 769948997269845995699279999971576678-8999999999999999983---997345354455577865167
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEEE-CCCCCCCC---------CC----C----------CCCCCCCCCCC-CCCCCHH
Q ss_conf 71022112222332322583267652-15444446---------42----2----------33653210023-6778978
Q gi|254780868|r 116 VFQRKIAGILIETLNLKNGLQAVVVG-IGLNVKHC---------PV----D----------TPYPVTSLQRE-GGCIDLK 170 (252)
Q Consensus 116 ~~~kKi~GIL~E~~~~~~~~~~~viG-iGiNi~~~---------~~----~----------~~~~~tsL~~~-~~~~~~~ 170 (252)
++++||+|+=-- ... . ..+.-| |=++.+.. ++ + .+...|+|.+. +..++.+
T Consensus 158 v~grKI~G~Aq~-r~~--~-~~l~hgtllv~~d~~~~~~~l~~~~~~~~~~k~~~s~~~rV~~~~~tsL~e~l~~~~s~~ 233 (288)
T 2p5i_A 158 IDGKKFAGISQR-RIR--G-GVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQPHNVS 233 (288)
T ss_dssp ETTEEEEEEEEE-EET--T-EEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSCCCHH
T ss_pred ECCEEEEEEEEE-EEC--C-EEEEEEEEEEECCHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHH
T ss_conf 888769997678-889--8-799999999808989999886243444422346652135435344476999838999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9998777999999
Q gi|254780868|r 171 DIFSLLFQDVARV 183 (252)
Q Consensus 171 ~l~~~l~~~l~~~ 183 (252)
++...++..+...
T Consensus 234 ev~~~l~~~~~~~ 246 (288)
T 2p5i_A 234 DVLLKALMTLQQH 246 (288)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999984
No 12
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus HB8} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=96.31 E-value=0.036 Score=31.68 Aligned_cols=121 Identities=19% Similarity=0.148 Sum_probs=72.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECC--CEEEECCCCCCCCCCCCC
Q ss_conf 679985316633334132235322400021013779999999999744542102462146--506710221122223323
Q gi|254780868|r 53 GRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPN--DILVFQRKIAGILIETLN 130 (252)
Q Consensus 53 Gr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iKWPN--Di~~~~kKi~GIL~E~~~ 130 (252)
.|.|...+-.||.|-+=.++...... ..+--..--++.++++.+. ++.. .-|. -++++++|||.|=+...
T Consensus 94 ~RGG~iTyHGPGQLV~YpIl~L~~~~---~~~v~~le~~ii~~l~~~g---i~~~-~~~~~~GVwv~~~KIasIGi~v~- 165 (237)
T 2qhs_A 94 ERGGDVTYHGPGQLVGYPIFPVGREV---RRFLRQIEEAIVRVAAGYG---ISAY-PTPGYAGVWVGEDKLCAIGVAVK- 165 (237)
T ss_dssp CSSSSEEEECTTEEEEEEECCCTTCH---HHHHHHHHHHHHHHHHHTT---CCCB-CCSSSSSEEETTEEEEEEEEEEE-
T ss_pred CCCCCEEEECCCCEEEEEHHHHHHHH---HHHHHHHHHHHHHHHHHCC---CCCC-CCCCCCCCCCCHHHHHHHHHHHC-
T ss_conf 79971689899966777746555329---9999999999999998626---6411-33677763440215999998724-
Q ss_pred CCCCCEEEEEECCCCCCCCC--------CCC-CCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 22583267652154444464--------223-365321002-36778978999877799999999
Q gi|254780868|r 131 LKNGLQAVVVGIGLNVKHCP--------VDT-PYPVTSLQR-EGGCIDLKDIFSLLFQDVARVLD 185 (252)
Q Consensus 131 ~~~~~~~~viGiGiNi~~~~--------~~~-~~~~tsL~~-~~~~~~~~~l~~~l~~~l~~~~~ 185 (252)
.. ...=|+.||++.+- ..+ +..+|||+. .+..++.+++...+++.|.+.+.
T Consensus 166 --r~--vt~HG~aLNV~~dL~~F~~IvpCGl~~~~vTSL~~elg~~~~~~ev~~~l~~~f~~~Fg 226 (237)
T 2qhs_A 166 --EG--VSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVFG 226 (237)
T ss_dssp --TT--EEEEEEEEESSCCGGGGGGBCCCSSCCSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHT
T ss_pred --CC--EEECCEEEECCCCHHHHCCEEECCCCCCCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf --75--58322689716982770737836889983724699768999999999999999999869
No 13
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A*
Probab=95.67 E-value=0.05 Score=30.81 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=66.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEE----------CCCEEEECCCC
Q ss_conf 36799853166333341322353224000210137799999999997445421024621----------46506710221
Q gi|254780868|r 52 RGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKW----------PNDILVFQRKI 121 (252)
Q Consensus 52 rGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iKW----------PNDi~~~~kKi 121 (252)
|-+.|..=+-.+|++.+|++++.+.. .....--.++-++.++++.+. +++...= ++|+.++++|+
T Consensus 72 R~tGGGaV~hd~g~l~~s~i~~~~~~--~~~~~y~~i~~~i~~~l~~lG---i~a~~~~~~~~~~~~~~~~dl~~~~~Ki 146 (262)
T 2c8m_A 72 RYTGGGAVYHDLGDLNFSVVRSSDDM--DITSMFRTMNEAVVNSLRILG---LDARPGELNDVSIPVNKKTDIMAGEKKI 146 (262)
T ss_dssp CSSCSCCEEECTTEEEEEEEEECSSC--CHHHHHHHHHHHHHHHHHHTT---CCCEECCBCCTTSSSSBTTSEEETTEEE
T ss_pred EECCCCEEEECCCCEEEEEEEECCCC--CHHHHHHHHHHHHHHHHHHCC---CCEEECCCCCCEEECCCCCCCCCCCCCE
T ss_conf 70798379977998699998706899--999999999999999999849---5158857688267336566412356612
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCC----------C-CCC--------CCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 1222233232258326765215444446----------4-223--------36532100236778978999877799999
Q gi|254780868|r 122 AGILIETLNLKNGLQAVVVGIGLNVKHC----------P-VDT--------PYPVTSLQREGGCIDLKDIFSLLFQDVAR 182 (252)
Q Consensus 122 ~GIL~E~~~~~~~~~~~viGiGiNi~~~----------~-~~~--------~~~~tsL~~~~~~~~~~~l~~~l~~~l~~ 182 (252)
+|.-.-.. . ..++.+..|.++.. | +.+ ....|+|.+. ..++.+++.+.+++.+.+
T Consensus 147 ~G~a~~~~---~--~~~l~hgsll~~~d~~~~~~~l~~p~~~~~~k~~~s~~~~vt~l~~~-~~~~~eev~~~l~~~f~~ 220 (262)
T 2c8m_A 147 MGAAGAMR---K--GAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDF-VDVSIDEVRNALIRGFSE 220 (262)
T ss_dssp EEEEEEEE---T--TEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGT-SCCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEE---C--CEEEEEEEEEECCCHHHHHHHHCCCCHHHHHHCCCCHHHHCCCHHHC-CCCCHHHHHHHHHHHHHH
T ss_conf 53567865---8--87999999886389999998648993100220355367513058772-898999999999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780868|r 183 VLD 185 (252)
Q Consensus 183 ~~~ 185 (252)
.+.
T Consensus 221 ~~~ 223 (262)
T 2c8m_A 221 TLH 223 (262)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 868
No 14
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=94.91 E-value=0.11 Score=28.60 Aligned_cols=125 Identities=17% Similarity=0.133 Sum_probs=77.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEC--CCEEEEC---CCCCCCCCC
Q ss_conf 67998531663333413223532240002101377999999999974454210246214--6506710---221122223
Q gi|254780868|r 53 GRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWP--NDILVFQ---RKIAGILIE 127 (252)
Q Consensus 53 Gr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iKWP--NDi~~~~---kKi~GIL~E 127 (252)
.|.|-..+-.||.|.+-.++...... .....--..--++.+++..+ +.+.. +-| ..+++++ +|||-|=+.
T Consensus 77 ~RGG~iTyHGPGQLV~Ypil~L~~~~-~~~~~v~~le~~ii~~l~~~---gi~a~-~~~~~~Gvwv~~~~~~KIasiGv~ 151 (232)
T 1w66_A 77 DRGGKITWHGPGQLVGYPIIGLAEPL-DVVNYVRRLEESLIQVCADL---GLHAG-RVDGRSGVWLPGRPARKVAAIGVR 151 (232)
T ss_dssp SSSSSEEEECTTEEEEEEECBBCSSC-CHHHHHHHHHHHHHHHHHHT---TCCCE-EETTEEEEEECSSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCCEEEEEEECCHHCC-CHHHHHHHHHHHHHHHHHHC---CCCCC-CCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 78954789789988998765112114-66888776899999999842---64222-236777755557525568777645
Q ss_pred CCCCCCCCEEEEEECCCCCCCCC--------CCC-CCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 32322583267652154444464--------223-365321002-3677897899987779999999987
Q gi|254780868|r 128 TLNLKNGLQAVVVGIGLNVKHCP--------VDT-PYPVTSLQR-EGGCIDLKDIFSLLFQDVARVLDLW 187 (252)
Q Consensus 128 ~~~~~~~~~~~viGiGiNi~~~~--------~~~-~~~~tsL~~-~~~~~~~~~l~~~l~~~l~~~~~~~ 187 (252)
.. ..+ .-=|+-||++.+- ..+ +..+|||.. .+..++.+++...+...|.+.++..
T Consensus 152 v~---~~v--t~HG~alNv~~dL~~f~~IvpCGl~~~~vTSl~~elg~~~~~~ev~~~l~~~~~~~f~~~ 216 (232)
T 1w66_A 152 VS---RAT--TLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGV 216 (232)
T ss_dssp EE---TTE--EEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HC---CCE--ECCCEEEEECCCHHHCCEEECCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 33---772--615569983587243792784799799674406996899989999999999999986230
No 15
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.24A {Pyrococcus horikoshii OT3} SCOP: d.104.1.4
Probab=90.11 E-value=0.46 Score=24.80 Aligned_cols=91 Identities=19% Similarity=0.233 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 13779999999999744542102462146506710221122223323225832676521544444642233653210023
Q gi|254780868|r 84 LSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPVDTPYPVTSLQRE 163 (252)
Q Consensus 84 l~~~~~~ai~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~~~~~~~~tsL~~~ 163 (252)
.+-+....+.+.|++. +.++. .==-|||++++|+.=-..- .+.....|=.|||+...-.-.+-++.+|.+.
T Consensus 87 rQRLl~~i~~e~L~~~---g~~~~-r~GDDLyv~~~KlSVSIAt-----~s~vS~kIH~GINV~~~g~P~~v~a~~L~d~ 157 (190)
T 2ddz_A 87 LQKLLIARLVELLWNY---GIEAS-RRGDDIYVNGRKLSISIAT-----VSPVSIKIHIGLNVKTVGVPPGVDAIGLEEL 157 (190)
T ss_dssp HHHHHHHHHHHHHHTT---TCCEE-EETTEEEETTEECEEEEEE-----ECSSCEEEEEEEESCCSSCCSSSCBCCHHHH
T ss_pred HHHHHHHHHHHHHHHC---CCCEE-ECCCEEEECCCEEEEEEEE-----CCCCCEEEEEEEEEECCCCCCCCCEECHHHC
T ss_conf 9999999999999975---98617-6278578869778999996-----0787258998788751674787404036542
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6778978999877799999999
Q gi|254780868|r 164 GGCIDLKDIFSLLFQDVARVLD 185 (252)
Q Consensus 164 ~~~~~~~~l~~~l~~~l~~~~~ 185 (252)
+. +..++...+...+..-++
T Consensus 158 g~--d~~~~m~~i~~~y~~E~~ 177 (190)
T 2ddz_A 158 GI--DPTEFMERSAKALVEEIE 177 (190)
T ss_dssp TC--CHHHHHHHHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHHHH
T ss_conf 77--899999999999999998
No 16
>3cw1_A Small nuclear ribonucleoprotein-associated proteins B and B; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens}
Probab=88.20 E-value=0.79 Score=23.36 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=29.5
Q ss_pred HHHHCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECCC
Q ss_conf 87523897799997993-899999987698748999699
Q gi|254780868|r 202 CFACGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEKK 239 (252)
Q Consensus 202 ~~~~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~~ 239 (252)
+...+++++|++...++ .+.|++.+.|.+..|+|.+..
T Consensus 8 kL~~~InkrVrV~l~DGR~~vG~L~afD~~mNLVL~d~~ 46 (174)
T 3cw1_A 8 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCD 46 (174)
T ss_pred HHHHHCCCEEEEEEECCEEEEEEEEEECCCCCEEECCEE
T ss_conf 899866997999980994999999997674667624858
No 17
>1d3b_B Protein (small nuclear ribonucleoprotein associated protein B); snRNP, splicing, core snRNP domain, systemic lupus erythematosus, SLE; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=85.95 E-value=1.3 Score=22.06 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=30.4
Q ss_pred HHHCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC
Q ss_conf 7523897799997993-89999998769874899969
Q gi|254780868|r 203 FACGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK 238 (252)
Q Consensus 203 ~~~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~ 238 (252)
..-++|+.|.+...++ .+.|++.+.|....|++.+.
T Consensus 9 L~~~i~k~v~V~l~dgR~~~G~L~~~D~~~NlVL~~~ 45 (91)
T 1d3b_B 9 MLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDC 45 (91)
T ss_dssp CGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEE
T ss_pred HHHHCCCEEEEEECCCCEEEEEEEEECCCCCEEEECE
T ss_conf 8986599799998799599999999987568885065
No 18
>3cw1_G Small nuclear ribonucleoprotein G; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens}
Probab=83.49 E-value=1.9 Score=21.00 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=29.3
Q ss_pred HHCCCCEEEEEECCE-EEEEEEEEECCCCCEEEEC
Q ss_conf 523897799997993-8999999876987489996
Q gi|254780868|r 204 ACGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEE 237 (252)
Q Consensus 204 ~~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~ 237 (252)
..++||+|.+...++ .+.|++.+.|....|++++
T Consensus 10 ~~~l~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~~ 44 (76)
T 3cw1_G 10 KKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDE 44 (76)
T ss_pred HHHCCCCEEEEECCCCEEEEEEEEECCCCCEEECC
T ss_conf 98669919999889919999999997723589804
No 19
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, homomeric, octamer, cytoplasm; 2.50A {Saccharomyces cerevisiae}
Probab=83.46 E-value=2 Score=20.78 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=28.5
Q ss_pred CCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC
Q ss_conf 3897799997993-89999998769874899969
Q gi|254780868|r 206 GIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK 238 (252)
Q Consensus 206 ~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~ 238 (252)
.+|++|.+...++ .+.|++.+.|+...|++++.
T Consensus 18 ~l~k~V~V~lkdg~~~~G~L~~~D~~mNlvL~d~ 51 (96)
T 3bw1_A 18 NLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDA 51 (96)
T ss_dssp GTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEE
T ss_pred HCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEE
T ss_conf 7898499998699799999999978577797407
No 20
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=81.83 E-value=2.4 Score=20.39 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=34.1
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC----CCCEEEEEEEEEC
Q ss_conf 23897799997993-89999998769874899969----9989999963110
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK----KGCVRQIFTGDIF 251 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~----~G~~~~i~sGeI~ 251 (252)
.++|+.|.+...++ .+.|+..+.|+...+.+++. .+ .+.-..|++|
T Consensus 11 ~~~~k~V~V~lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-~~~~~lg~v~ 61 (77)
T 1i4k_A 11 RSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNG-EVVRKVGSVV 61 (77)
T ss_dssp TTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETT-EEEEEEEEEE
T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECC-CEEEECCEEE
T ss_conf 85899799999899799999999979997698215999079-7075825199
No 21
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet in the heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=81.59 E-value=2.1 Score=20.73 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=29.3
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC
Q ss_conf 23897799997993-89999998769874899969
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK 238 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~ 238 (252)
.++|++|.+...++ .+.|++.+.|+...|++++.
T Consensus 18 ~~l~k~V~V~lk~g~~~~G~L~~~D~~~NlvL~~~ 52 (81)
T 1i8f_A 18 DSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDA 52 (81)
T ss_dssp TTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEE
T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCCCEEECCE
T ss_conf 86799799998899599999999757566886375
No 22
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=80.88 E-value=2.5 Score=20.19 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=33.7
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC----CCCEEEEEEEEEC
Q ss_conf 23897799997993-89999998769874899969----9989999963110
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK----KGCVRQIFTGDIF 251 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~----~G~~~~i~sGeI~ 251 (252)
..+|+.|.+...++ .+.|++.+.|+...|.+++. .+. +.-..|.+|
T Consensus 11 ~~~~~~V~V~lk~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~-~~~~lg~v~ 61 (75)
T 1h64_1 11 RSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGE-VVKRYGKIV 61 (75)
T ss_dssp TTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTE-EEEEEEEEE
T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCC-CEEECCCEE
T ss_conf 868997999995998999999999799987985689992798-473977099
No 23
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=77.96 E-value=3.1 Score=19.61 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=40.5
Q ss_pred CCCCEEEEEECCE-EEEEEEEEECCCCCEEEECCCCCEEEEEEEEECC
Q ss_conf 3897799997993-8999999876987489996999899999631109
Q gi|254780868|r 206 GIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEKKGCVRQIFTGDIFT 252 (252)
Q Consensus 206 ~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~~G~~~~i~sGeI~~ 252 (252)
..|..|.+...++ .+.|++.++.++|.-.|+.+||..+.+-.-+||+
T Consensus 66 ~vG~~V~a~~~~~~~y~g~i~~~~~~~~Y~V~FdDG~~~~v~r~~i~~ 113 (123)
T 2xdp_A 66 AEGEVVQVKWPDGKLYGAKYFGSNIAHMYQVEFEDGSQIAMKREDIYT 113 (123)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEEEEEEEEEECTTSCEEEEEGGGCCC
T ss_pred CCCCEEEEECCCCCEEEEEEEEEECCCEEEEEECCCCEEEECHHHEEE
T ss_conf 889899999689829999999980587899999789989977899299
No 24
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=77.35 E-value=3.3 Score=19.51 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=34.5
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC----CCCEEEEEEEEEC
Q ss_conf 23897799997993-89999998769874899969----9989999963110
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK----KGCVRQIFTGDIF 251 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~----~G~~~~i~sGeI~ 251 (252)
..+|+.|.+...++ .+.|++.+.|+...+.+++. .+. +....|++|
T Consensus 22 ~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~-~~~~~g~v~ 72 (83)
T 1mgq_A 22 NSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGE-VTRRLGTVL 72 (83)
T ss_dssp HTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTE-EEEEEEEEE
T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCC-CEEECCCEE
T ss_conf 858997999987999999999999899987984589994797-170847299
No 25
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=77.17 E-value=3.3 Score=19.47 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=29.1
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC
Q ss_conf 23897799997993-89999998769874899969
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK 238 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~ 238 (252)
..+|+.|.+...++ .+.|++.++|+...|.+++.
T Consensus 16 ~~l~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~ 50 (81)
T 1th7_A 16 ESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDS 50 (81)
T ss_dssp HHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEE
T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCCCEEECEE
T ss_conf 87799599998899699999999958784398408
No 26
>3cw1_F Small nuclear ribonucleoprotein F; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens}
Probab=74.67 E-value=3.9 Score=19.06 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=28.5
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC
Q ss_conf 23897799997993-89999998769874899969
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK 238 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~ 238 (252)
..+|+.|.+...++ .+.|+..+.|+.-.+.+++.
T Consensus 13 ~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~~~ 47 (86)
T 3cw1_F 13 GLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANT 47 (86)
T ss_pred HHCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEE
T ss_conf 72897799999899599999998468860799108
No 27
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1
Probab=72.57 E-value=3 Score=19.73 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=28.1
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC
Q ss_conf 23897799997993-89999998769874899969
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK 238 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~ 238 (252)
..+|+.|.|...++ .+.|++.+.|....|+|++.
T Consensus 35 ~~lgk~V~V~lkdgr~~~G~L~~fD~~mNLvL~d~ 69 (121)
T 2fwk_A 35 KCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDV 69 (121)
T ss_dssp HTBTSBCEEEETTTEEECCEEEEECTTCCEEEESC
T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEE
T ss_conf 87798799998799899999999977688578527
No 28
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown function; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=71.53 E-value=4.6 Score=18.60 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=33.2
Q ss_pred HCCCCEEEEEECCE--EEEEEEEEECCCCCEEEECC----CCCEEEEEEEEEC
Q ss_conf 23897799997993--89999998769874899969----9989999963110
Q gi|254780868|r 205 CGIGDLITIKLSYG--SILGRFVGVDDFGYLLLEEK----KGCVRQIFTGDIF 251 (252)
Q Consensus 205 ~~~gk~V~i~~~~~--~~~G~~~gId~~G~L~i~~~----~G~~~~i~sGeI~ 251 (252)
..+|+.|.+...++ .+.|++.+.|+...+.+++. .+. +....|++|
T Consensus 12 ~~~~~~V~V~Lk~~~~~~~G~L~~~D~~mNivL~~~~e~~~~~-~~~~~~~v~ 63 (77)
T 1ljo_A 12 SMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEE-KVRSLGEIV 63 (77)
T ss_dssp HTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTE-EEEEEEEEE
T ss_pred HHCCCEEEEEEECCCEEEEEEEEEECCCCCEEEEEEEEEECCC-CEEECCEEE
T ss_conf 7489979999968989999999999586887998899990698-684967099
No 29
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.36 E-value=4.9 Score=18.44 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=37.5
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECCCCCEEEEEEEEEC
Q ss_conf 23897799997993-899999987698748999699989999963110
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEKKGCVRQIFTGDIF 251 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~~G~~~~i~sGeI~ 251 (252)
+..|..|..+-.++ -+-|++..++++|...|+.++|.++.+..-+|.
T Consensus 10 ~~vGd~v~ArwsD~~~Y~a~I~~~~~~~~y~V~fdDG~~e~V~~~~Ir 57 (74)
T 2equ_A 10 FKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIK 57 (74)
T ss_dssp CCTTCEEEEECSSSSEEEEEEEEESTTSSEEEEETTSCEEEECGGGEE
T ss_pred CCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEECCCEEEEEHHHCE
T ss_conf 787999999979994998999998789979999966999997089928
No 30
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=66.88 E-value=5.7 Score=17.99 Aligned_cols=48 Identities=27% Similarity=0.384 Sum_probs=33.9
Q ss_pred HHHCCCCEEEEEEC-C-EEEEEEEEEECCCCCEEEECC----CCCEEEEEEEEEC
Q ss_conf 75238977999979-9-389999998769874899969----9989999963110
Q gi|254780868|r 203 FACGIGDLITIKLS-Y-GSILGRFVGVDDFGYLLLEEK----KGCVRQIFTGDIF 251 (252)
Q Consensus 203 ~~~~~gk~V~i~~~-~-~~~~G~~~gId~~G~L~i~~~----~G~~~~i~sGeI~ 251 (252)
.-..+|+.|.|... + ..+.|+..++|+.-.+.+++. +| .+...-|++|
T Consensus 26 L~~~igk~V~V~Lk~ng~~~~G~L~~~D~~mNlvL~d~~e~~~~-~~~~~l~~v~ 79 (93)
T 1n9r_A 26 LKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAG-VSHGTLGEIF 79 (93)
T ss_dssp CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETT-EEEEECCSEE
T ss_pred HHHHCCCEEEEEEECCCEEEEEEEEEECCCCCEEEEEEEEEECC-CCEEECCCEE
T ss_conf 98738986999994299999999999848980599159999168-6023747199
No 31
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=65.93 E-value=5 Score=18.33 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=39.1
Q ss_pred HCCCCEEEEEECCEE-EEEEEEEECCCCCEEEECCCCCEEEEEEEEECC
Q ss_conf 238977999979938-999999876987489996999899999631109
Q gi|254780868|r 205 CGIGDLITIKLSYGS-ILGRFVGVDDFGYLLLEEKKGCVRQIFTGDIFT 252 (252)
Q Consensus 205 ~~~gk~V~i~~~~~~-~~G~~~gId~~G~L~i~~~~G~~~~i~sGeI~~ 252 (252)
...|..|.+...++. +.|++.++.++|.-.|+.+||..+.+-.=+||+
T Consensus 64 ~~vG~~V~a~~~~~~~y~g~v~~~~~~~~Y~V~fdDG~~~~v~r~~i~~ 112 (118)
T 2qqr_A 64 PAEGEVVQVRWTDGQVYGAKFVASHPIQMYQVEFEDGSQLVVKRDDVYT 112 (118)
T ss_dssp CCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEETTSCEEEECGGGEEE
T ss_pred CCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCEEEECHHHEEE
T ss_conf 4779899998489829789999982687899999489988975899174
No 32
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus erythematosus, SLE; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=62.53 E-value=6.9 Score=17.48 Aligned_cols=45 Identities=16% Similarity=0.292 Sum_probs=33.9
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEEC-----CCCCEEEEEEEEEC
Q ss_conf 23897799997993-8999999876987489996-----99989999963110
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEE-----KKGCVRQIFTGDIF 251 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~-----~~G~~~~i~sGeI~ 251 (252)
...|+.|.++..++ .+.|+..++|+.-.+.+++ ++|+. ...|++|
T Consensus 12 ~~~g~~V~VeLk~g~~~~G~L~~~D~~mNl~L~d~~~~~~~~~~--~~~~~~~ 62 (75)
T 1d3b_A 12 EAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRV--AQLEQVY 62 (75)
T ss_dssp HTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCE--EEEEEEE
T ss_pred HCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEEEEEEECCCCE--EECCEEE
T ss_conf 66899899999998299999998868738999899999089954--1737699
No 33
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=57.18 E-value=8.5 Score=16.91 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=13.4
Q ss_pred CCCCEEEEEECCE-EEEEEEEEECCCCCEEEE
Q ss_conf 3897799997993-899999987698748999
Q gi|254780868|r 206 GIGDLITIKLSYG-SILGRFVGVDDFGYLLLE 236 (252)
Q Consensus 206 ~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~ 236 (252)
.+|+.|.+...++ .+.|+..++|+.-.+.++
T Consensus 8 ligk~V~V~LknG~~~~G~L~~~D~~mNlvL~ 39 (130)
T 1m5q_A 8 LLGREVQVVLSNGEVYKGVLHAVDNQLNIVLA 39 (130)
T ss_dssp TTTSEEEEEETTSCEEEEEEEEECTTCCEEEE
T ss_pred HCCCEEEEEECCCCEEEEEEEEECCCCEEEEE
T ss_conf 37987999998996999999886698668996
No 34
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemic lupus erythematosus, SLE; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 3cw1_B
Probab=47.72 E-value=12 Score=15.97 Aligned_cols=33 Identities=27% Similarity=0.264 Sum_probs=20.5
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEEC
Q ss_conf 23897799997993-8999999876987489996
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEE 237 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~ 237 (252)
...|+.|.+++.++ .+.|+..++|+.-.+.+++
T Consensus 9 kl~g~~VtVELKnG~~~~G~L~~vD~~MNl~L~n 42 (119)
T 1b34_A 9 KLSHETVTIELKNGTQVHGTITGVDVSMNTHLKA 42 (119)
T ss_dssp TCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEE
T ss_pred HCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEE
T ss_conf 6699869999889969999999985988699989
No 35
>1o5u_A Novel thermotoga maritima enzyme TM1112; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=47.61 E-value=6.8 Score=17.51 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=17.8
Q ss_pred CCCEEEECCCCCEEEEEEEEEC
Q ss_conf 8748999699989999963110
Q gi|254780868|r 230 FGYLLLEEKKGCVRQIFTGDIF 251 (252)
Q Consensus 230 ~G~L~i~~~~G~~~~i~sGeI~ 251 (252)
+|+..|.+++|....+.+||+|
T Consensus 57 eG~v~it~~~G~~~~~~aGD~~ 78 (101)
T 1o5u_A 57 EGKVEVTTEDGKKYVIEKGDLV 78 (101)
T ss_dssp EEEEEEEETTCCEEEEETTCEE
T ss_pred EEEEEEECCCCCEEEEECCCEE
T ss_conf 8599999199958999589899
No 36
>3cw1_D Small nuclear ribonucleoprotein SM D3; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens}
Probab=44.79 E-value=13 Score=15.69 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=10.1
Q ss_pred CCEEEEEECCE-EEEEEEEEECCCCCEEE
Q ss_conf 97799997993-89999998769874899
Q gi|254780868|r 208 GDLITIKLSYG-SILGRFVGVDDFGYLLL 235 (252)
Q Consensus 208 gk~V~i~~~~~-~~~G~~~gId~~G~L~i 235 (252)
|+.|.|++.++ ++.|+..++|+.=.+.+
T Consensus 15 g~~V~VeLKng~~~~G~L~~~D~~MN~~L 43 (126)
T 3cw1_D 15 GHIVTCETNTGEVYRGKLIEAEDNMNCQM 43 (126)
T ss_pred CCEEEEEECCCCEEEEEEEEECCCEEEEE
T ss_conf 99899998998499999997728548999
No 37
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle/transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=43.89 E-value=14 Score=15.60 Aligned_cols=46 Identities=13% Similarity=-0.019 Sum_probs=29.7
Q ss_pred HCCCCEEEEEECCEE-EEEEEEEECCCCC---EEEECCCCCEEEEEEEEEC
Q ss_conf 238977999979938-9999998769874---8999699989999963110
Q gi|254780868|r 205 CGIGDLITIKLSYGS-ILGRFVGVDDFGY---LLLEEKKGCVRQIFTGDIF 251 (252)
Q Consensus 205 ~~~gk~V~i~~~~~~-~~G~~~gId~~G~---L~i~~~~G~~~~i~sGeI~ 251 (252)
...|..|.....+.. ..|++.++.+++. -++. +||..+.+.--+++
T Consensus 58 L~vG~~V~a~~~~~~~~~G~I~~~~~~~~~~yyvV~-dDG~~~~l~r~~l~ 107 (123)
T 2g3r_A 58 IPLDTEVTALSEDEYFSAGVVKGHRKESGELYYSIE-KEGQRKWYKRMAVI 107 (123)
T ss_dssp CCTTCEEEEECTTSCEEEEEEEEEEEETTEEEEEEE-ETTEEEEEEGGGEE
T ss_pred CCCCCEEEEEECCCEEEEEEEEECCCCCCCCEEEEE-ECCCEEEEEEHHEE
T ss_conf 888999999948960920899813278973389999-58978999613458
No 38
>2l1s_A Uncharacterized protein YOHN; PFAM PF11776, DUF3315, JCSG, structural genomics, PSI-2, Pro structure initiative; NMR {Klebsiella pneumoniae subsp}
Probab=43.81 E-value=14 Score=15.62 Aligned_cols=26 Identities=23% Similarity=0.638 Sum_probs=20.5
Q ss_pred EEECCCCCEEEECCCCCEEEEEEEEEC
Q ss_conf 987698748999699989999963110
Q gi|254780868|r 225 VGVDDFGYLLLEEKKGCVRQIFTGDIF 251 (252)
Q Consensus 225 ~gId~~G~L~i~~~~G~~~~i~sGeI~ 251 (252)
..++.+ .++|...+|.+-.+.+||||
T Consensus 55 vrv~~d-yvLV~~~tG~I~~i~~G~i~ 80 (83)
T 2l1s_A 55 TYMGGN-YVLITDTEGKILKVYDGEIF 80 (83)
T ss_dssp EECSSE-EEEEETTTCBEEEEEEGGGG
T ss_pred EEECCE-EEEEECCCCEEEEEEECEEE
T ss_conf 998998-99998689959999804287
No 39
>3bcw_A Uncharacterized protein; NP_887725.1, domain of unknown function with A RMLC-like cupin fold; 1.60A {Bordetella bronchiseptica RB50}
Probab=42.67 E-value=10 Score=16.47 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=17.7
Q ss_pred CCCEEEECCCCCEEEEEEEEEC
Q ss_conf 8748999699989999963110
Q gi|254780868|r 230 FGYLLLEEKKGCVRQIFTGDIF 251 (252)
Q Consensus 230 ~G~L~i~~~~G~~~~i~sGeI~ 251 (252)
+|++.|.+++|....+..||+|
T Consensus 76 eG~~~it~~~G~~~~~~aGD~~ 97 (123)
T 3bcw_A 76 EGEARLVDPDGTVHAVKAGDAF 97 (123)
T ss_dssp EEEEEEECTTCCEEEEETTCEE
T ss_pred EEEEEEEECCCCEEEECCCCEE
T ss_conf 6399999699989998189999
No 40
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=37.74 E-value=17 Score=15.01 Aligned_cols=15 Identities=20% Similarity=0.394 Sum_probs=8.3
Q ss_pred CCCCEEEEEECCCEE
Q ss_conf 542102462146506
Q gi|254780868|r 101 PVGTDVKIKWPNDIL 115 (252)
Q Consensus 101 ~~~~~~~iKWPNDi~ 115 (252)
+.|..+..+|+.+-|
T Consensus 63 ~vG~~V~a~~~~~~~ 77 (156)
T 1ssf_A 63 PLDTEVTALSEDEYF 77 (156)
T ss_dssp CSSEEEEESSCTTTC
T ss_pred CCCCEEEEECCCCEE
T ss_conf 569866656377458
No 41
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=34.20 E-value=13 Score=15.67 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.1
Q ss_pred CCCEEEECCCCCEEEEEEEEEC
Q ss_conf 8748999699989999963110
Q gi|254780868|r 230 FGYLLLEEKKGCVRQIFTGDIF 251 (252)
Q Consensus 230 ~G~L~i~~~~G~~~~i~sGeI~ 251 (252)
+|+..|.+++|..+.+..||+|
T Consensus 194 eG~v~it~~~G~~~~~~aGD~~ 215 (238)
T 3myx_A 194 EGRVVLSLENGSSLTVNTGDTV 215 (238)
T ss_dssp ECCEEEEETTSCEEEECTTCEE
T ss_pred EEEEEEEECCCCEEEECCCCEE
T ss_conf 7199999099978997599989
No 42
>3fn2_A Putative sensor histidine kinase domain; GUT microbiome, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Clostridium symbiosum atcc 14940}
Probab=31.05 E-value=22 Score=14.33 Aligned_cols=69 Identities=12% Similarity=0.273 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCEEEEEEEEEECCCCCEEEECCCC
Q ss_conf 9789998777999999998730355648899999875238977999979938999999876987489996999
Q gi|254780868|r 168 DLKDIFSLLFQDVARVLDLWKKDTGREEIMNLWRCFACGIGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKG 240 (252)
Q Consensus 168 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~gk~V~i~~~~~~~~G~~~gId~~G~L~i~~~~G 240 (252)
++..++...+..+...+....-..+-+.+++.|+.++. .-|++.+.++++. +-.++-.++.+.+...+|
T Consensus 12 ~~k~~Ar~mf~~~n~di~yL~grlSe~Eir~kYr~y~~---~yvRItd~dGqVI-t~~~~~~~~~~~~L~~eg 80 (106)
T 3fn2_A 12 NQKTLAVYMFEEINRDVEYLSGRLSEKELKDKYRYYGR---GYVRITDKDGQVI-TYEDGSVQDKTVFLTNEG 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHSSTTT---CEEEEECTTSCBC-SCCCSCSTTEEEEEEECS
T ss_pred CHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHCC---CEEEEECCCCCEE-ECCCCCCCCEEEEEECCC
T ss_conf 49999999999871136876550258999999875057---4178974898888-189988887078874157
No 43
>3cw1_E Small nuclear ribonucleoprotein E; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens}
Probab=28.83 E-value=24 Score=14.09 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=25.2
Q ss_pred HCCCCEEEEEECC-EEEEEEEEEECCCCCEEEECC
Q ss_conf 2389779999799-389999998769874899969
Q gi|254780868|r 205 CGIGDLITIKLSY-GSILGRFVGVDDFGYLLLEEK 238 (252)
Q Consensus 205 ~~~gk~V~i~~~~-~~~~G~~~gId~~G~L~i~~~ 238 (252)
......|.+...+ .+++|+..|.|+...|++++.
T Consensus 27 ~~~~v~V~v~~~~~~~i~G~L~g~D~~mNlvL~d~ 61 (92)
T 3cw1_E 27 NRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDA 61 (92)
T ss_pred HCCCEEEEEEECCCEEEEEEEEEEECCCEEEEECE
T ss_conf 27887999997699199999999803417998157
No 44
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=23.19 E-value=31 Score=13.45 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=13.6
Q ss_pred CCCCCCE-EEEEEECCCCHHHHHHHHH
Q ss_conf 1799970-4999816485689999999
Q gi|254780868|r 8 CQNPYSF-RYEFFDTISSTNDECMKRA 33 (252)
Q Consensus 8 ~~~p~~~-~i~~~~~~~STn~~~~~~~ 33 (252)
...|.+. ++.|..+=..-++.|.+++
T Consensus 108 ~~~p~~~~~v~f~~sGsEA~e~Alkla 134 (476)
T 3i5t_A 108 TLTPGDLNRIFFTTGGSTAVDSALRFS 134 (476)
T ss_dssp TTSSTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 857887464885167168899999986
No 45
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.04 E-value=28 Score=13.71 Aligned_cols=15 Identities=20% Similarity=0.647 Sum_probs=12.9
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 678367998531663
Q gi|254780868|r 49 TAGRGRRDNKWISDK 63 (252)
Q Consensus 49 t~GrGr~gr~W~s~~ 63 (252)
..|++|+.|.|.-|+
T Consensus 2 ~~~~~~~kr~w~~pP 16 (123)
T 2yqg_A 2 SSGSSGQKRAWITAP 16 (123)
T ss_dssp CSCSSCSCCSSCCCC
T ss_pred CCCCCCCCCCCCCCC
T ss_conf 887676367711799
No 46
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=22.54 E-value=32 Score=13.37 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECC-----EEEEEEEEEECCCCCEEEE
Q ss_conf 556488999998752389779999799-----3899999987698748999
Q gi|254780868|r 191 TGREEIMNLWRCFACGIGDLITIKLSY-----GSILGRFVGVDDFGYLLLE 236 (252)
Q Consensus 191 ~~~~~i~~~~~~~~~~~gk~V~i~~~~-----~~~~G~~~gId~~G~L~i~ 236 (252)
.|.+.-+....++-.++|+.|+++... +.+.|+..++++++ +.++
T Consensus 87 PGldRpL~~~~~f~r~~G~~v~V~l~~~~~~~k~~~G~L~~v~~~~-i~l~ 136 (164)
T 1ib8_A 87 PGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDE-LTME 136 (164)
T ss_dssp CSSSSCCSSHHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETTE-EEEE
T ss_pred CCCCCCCCCHHHHHHHCCCEEEEEEECCCCCCEEEEEEEEEEECCE-EEEE
T ss_conf 9988543797999986595799999647699389999999974998-9999
No 47
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemic lupus erythematosus, SLE; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 3cw1_C
Probab=21.54 E-value=33 Score=13.24 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=29.0
Q ss_pred HHHHCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC
Q ss_conf 87523897799997993-89999998769874899969
Q gi|254780868|r 202 CFACGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK 238 (252)
Q Consensus 202 ~~~~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~ 238 (252)
..+...++.|.|...++ .+.|++.+-|..-.|++++.
T Consensus 33 ~~~~~~~~rV~V~lr~~r~~~G~L~afD~h~NlVL~d~ 70 (118)
T 1b34_B 33 TQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 70 (118)
T ss_dssp HHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEE
T ss_pred HHHHHCCCEEEEEECCCCEEEEEEEEECCCCEEEEECE
T ss_conf 99986796899997799899999998622106664020
No 48
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=20.68 E-value=34 Score=13.13 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=6.2
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 7897899987779999
Q gi|254780868|r 166 CIDLKDIFSLLFQDVA 181 (252)
Q Consensus 166 ~~~~~~l~~~l~~~l~ 181 (252)
.+|. ++.+.+++-..
T Consensus 114 ~fD~-~~yN~lv~l~~ 128 (142)
T 2pi2_E 114 PFDL-GLYNEAVKIIH 128 (142)
T ss_dssp CCCH-HHHHHHHHHHH
T ss_pred CCCH-HHHHHHHHHHH
T ss_conf 5599-99999999987
Done!