HHSEARCH alignment of GI: 254780868 and SCOP domain: d1vqza2

Alignment

Probab=97.26  E-value=0.0012  Score=39.37  Aligned_cols=123  Identities=14%  Similarity=0.045  Sum_probs=76.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             79985316633334132235322400021013779999999999744542102462146506710221122223323225
Q gi|254780868|r   54 RRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKN  133 (252)
Q Consensus        54 r~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~  133 (252)
                      +.|..=+-.+|++.+|++++.+.+...   .-....-+++++++.+   +.++...=+||+.+++||++|+-.-.   ..
T Consensus        70 tGGgaV~h~~g~~~~s~i~~~~~~~~~---~~~~~~~~i~~al~~~---g~~a~~~~~~d~~v~g~Ki~G~aq~~---~~  140 (241)
T d1vqza2          70 SGGGAVYHDLNNLNYTIISKEDENKAF---DFKSFSTPVINTLAQL---GVKAEFTGRNDLEIDGKKFCGNAQAY---IN  140 (241)
T ss_dssp             SCSCCEEECTTEEEEEEEEECCTTCCC---SHHHHHHHHHHHHHHT---TCCEEEETTTEEEETTEEEEEEEEEE---ET
T ss_pred             CCCCEEEECCCCEEEEEEECCCCCHHH---HHHHHHHHHHHHHHHH---CCCEEEECCCCEEECCEEEEEEEEEE---EC
T ss_conf             898638977997489999637654377---8999999999999984---46608822587798787876678998---68


Q ss_pred             CCEEEEEECCCCCCCCCC-----------CC--------CCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             832676521544444642-----------23--------365321002-3677897899987779999999987
Q gi|254780868|r  134 GLQAVVVGIGLNVKHCPV-----------DT--------PYPVTSLQR-EGGCIDLKDIFSLLFQDVARVLDLW  187 (252)
Q Consensus       134 ~~~~~viGiGiNi~~~~~-----------~~--------~~~~tsL~~-~~~~~~~~~l~~~l~~~l~~~~~~~  187 (252)
                        ..++.+.-|++...++           ..        ....|+|.. .+..++.+++.+.+++.+.+.+..+
T Consensus       141 --~~~l~hgsll~~~d~~~~~~~l~~~~~~~~~~~~~s~~~~v~~l~~~l~~~~~~e~~~~~l~~~f~~~~~~~  212 (241)
T d1vqza2         141 --GRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYPEM  212 (241)
T ss_dssp             --TEEEEEEEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCTTC
T ss_pred             --CEEEEEEEEEECCCHHHHHHHHCCCCCCCHHHCCCCCHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             --839999898715999999998488964331214522032111658771899999999999999999974888

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: LplA-like protein SP1160, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]