HHSEARCH alignment of GI: 254780868 and SCOP domain: d2p0la1

Alignment
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]}
Probab=97.29  E-value=0.00027  Score=43.49  Aligned_cols=138  Identities=17%  Similarity=0.130  Sum_probs=80.7

Q ss_pred             CCEEEEECCCCC-------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HCCCHHHHHHHHHHHHHHH
Q ss_conf             978999824467-------------------83679985316633334132235322400-0210137799999999997
Q gi|254780868|r   39 GNLWIVASCQTA-------------------GRGRRDNKWISDKGNLYASLLLIDSISKD-SLTLLSFAIAVAMRSVIAS   98 (252)
Q Consensus        39 ~~~~v~A~~Qt~-------------------GrGr~gr~W~s~~G~l~~S~~~~~~~~~~-~~~~l~~~~~~ai~~~l~~   98 (252)
                      ++++++-.+|+.                   =|-+.|..=+-.+|+|.+|++++...... .....-...+-.+.++++.
T Consensus        52 ~ptvvlG~~q~~~~~~e~~~~~~~~~gi~vvRR~sGGgaV~hd~G~l~~s~i~p~~~~~~~~i~~~y~~~~~~i~~~L~~  131 (269)
T d2p0la1          52 TKTVILGMLDRELPHLELAKKEIISRGYEPVVRNFGGLAVVADEGILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSD  131 (269)
T ss_dssp             SSEEEECTTGGGCTTHHHHHHHHHTTTCEEEECTTCCSCEEESTTEEEEEEEEESCC---CCHHHHHHHHHHHHHHHTTT
T ss_pred             CCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99899898767682188889999985995899657986699889967999997055335899999999999999999997


Q ss_pred             HCCCCCEEEEEEC--------CCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC-----------------C--
Q ss_conf             4454210246214--------650671022112222332322583267652154444464-----------------2--
Q gi|254780868|r   99 TLPVGTDVKIKWP--------NDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCP-----------------V--  151 (252)
Q Consensus        99 ~~~~~~~~~iKWP--------NDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~-----------------~--  151 (252)
                      +   |+++...-+        |||.++++|++|.=- ....    ..+..+..|+++...                 .  
T Consensus       132 l---Gi~a~~~~~~~~~c~g~~Dl~v~grKi~G~Aq-r~~r----~~~l~hgtllv~~d~~~~~~ll~~~~~~~~~~~~~  203 (269)
T d2p0la1         132 F---YQPIEHFEVETSYCPGKFDLSINGKKFAGLAQ-RRIK----NGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGS  203 (269)
T ss_dssp             S---CSCCEECCCTTSSSCCTTCEEETTEEEEEEEE-EEET----TEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             C---CCCEEEECCCCCCCCCCEEEEECCEEEEEEEE-EEEC----CEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             5---97368713567778775357744727998767-8988----88999999997078899999987777630464454


Q ss_pred             ------CCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             ------23365321002-3677897899987779999999
Q gi|254780868|r  152 ------DTPYPVTSLQR-EGGCIDLKDIFSLLFQDVARVL  184 (252)
Q Consensus       152 ------~~~~~~tsL~~-~~~~~~~~~l~~~l~~~l~~~~  184 (252)
                            -.+...|+|.+ .+..++.+++...++..|....
T Consensus       204 ~~~~~~~~~~~vtsL~~~L~~~~s~e~v~~~l~~~f~~~~  243 (269)
T d2p0la1         204 PIAYPNVDPEIMANLSDLLDCPMTVEDVIDRMLISLKQVG  243 (269)
T ss_dssp             SSCCCCCCTTSBCCHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHEEEHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             3335765501213599873999999999999999999972


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoate-protein ligase A
species: Streptococcus agalactiae [TaxId: 1311]