HHSEARCH alignment of GI: 254780868 and SCOP domain: d2zgwa2

Alignment
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=100.00  E-value=0  Score=311.88  Aligned_cols=179  Identities=32%  Similarity=0.455  Sum_probs=155.8

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHH
Q ss_conf             99704999816485689999999739999789998244678367998531663333413223532240002101377999
Q gi|254780868|r   11 PYSFRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAV   90 (252)
Q Consensus        11 p~~~~i~~~~~~~STn~~~~~~~~~~~~~~~~v~A~~Qt~GrGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~   90 (252)
                      ..+.+++|||+++||||+|++.   ..+++++|+|++||+||||+||.|+||+|++|+|++++++.+...++.+++++|+
T Consensus         8 ~iG~~i~~~~~v~STn~~a~~~---~~~~~~vv~a~~Qt~GrGR~gr~W~sp~g~l~~S~~~~~~~~~~~~~~l~~~~~~   84 (188)
T d2zgwa2           8 IIGRRVIYFQEITSTNEFAKTS---YLEEGTVIVADKQTMGHGALNRKWESPEGGLWLSIVLSPKVPQKDLPKIVFLGAV   84 (188)
T ss_dssp             STTSEEEEESSBSCHHHHHHHS---CCCTTCEEEESCBSSCBCGGGCBCCCCTTSEEEEEEECCCSCTTTGGGHHHHHHH
T ss_pred             HHCCEEEEECCCCCHHHHHHHC---CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             6378699948678879999860---9989809998965778877998786985221317886213312455556677777


Q ss_pred             HHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCH
Q ss_conf             999999974454210246214650671022112222332322583267652154444464223365321002-3677897
Q gi|254780868|r   91 AMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPVDTPYPVTSLQR-EGGCIDL  169 (252)
Q Consensus        91 ai~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~~~~~~~~tsL~~-~~~~~~~  169 (252)
                      +++++++.+   +.++++|||||||+++||+||||+|+..     .++|||||||+++.+   +.++||+.. .+..+++
T Consensus        85 av~~~l~~~---~~~~~iKWPNDI~~~~kKi~GILiE~~~-----~~~iiGiGiNvn~~~---~~~atsl~~~~~~~~~~  153 (188)
T d2zgwa2          85 GVVETLKEF---SIDGRIKWPNDVLVNYKAIAGVLVEGKG-----DKIVLGIGLNVNNKV---PNGATSMKLELGSEVPL  153 (188)
T ss_dssp             HHHHHHHHT---TCCCEEETTTEEEETTEEEEEEEEEESS-----SCEEEEEEECSSSCC---CTTCCCHHHHHSSCCCH
T ss_pred             HHHHHHHHC---CCCEEEEECCHHEECCCCEEEEEEECCC-----CEEEEEEEEECCCCC---CCCCCCHHHHHCCCCCH
T ss_conf             788764310---4102678742212688723799871346-----659998876548879---98750099986899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             899987779999999987303556488999998752
Q gi|254780868|r  170 KDIFSLLFQDVARVLDLWKKDTGREEIMNLWRCFAC  205 (252)
Q Consensus       170 ~~l~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~  205 (252)
                      +++++.++..+.+.+..|.++ +++ +++.|++++.
T Consensus       154 ~~l~~~l~~~l~~~~~~~~~~-~~~-~~~~~~~~~l  187 (188)
T d2zgwa2         154 LSVFRSLITNLDRLYLNFLKN-PMD-ILNLVRDNMI  187 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTH-HHHHHHHTBC
T ss_pred             HHHHHHHHHHHHHHHHHHHCC-CHH-HHHHHHHHHC
T ss_conf             999999999999999999838-947-9999998506


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Biotin holoenzyme synthetase
domain: Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]