Query gi|254780868|ref|YP_003065281.1| birA bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 252 No_of_seqs 159 out of 2775 Neff 8.1 Searched_HMMs 13730 Date Wed Jun 1 10:28:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780868.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1biaa3 d.104.1.2 (A:64-270) B 100.0 0 0 337.6 12.9 188 13-204 15-206 (207) 2 d2zgwa2 d.104.1.2 (A:1-188) Bi 100.0 0 0 311.9 15.8 179 11-205 8-187 (188) 3 d1biaa2 b.34.1.1 (A:271-317) B 98.5 7.2E-08 5.2E-12 65.8 6.1 45 206-251 1-45 (47) 4 d2zgwa1 b.34.1.1 (A:189-235) B 97.3 0.00024 1.7E-08 43.8 6.0 41 209-250 2-42 (47) 5 d2p0la1 d.104.1.3 (A:4-272) Li 97.3 0.00027 2E-08 43.5 6.1 138 39-184 52-243 (269) 6 d1vqza2 d.104.1.3 (A:1-241) Lp 97.3 0.0012 8.9E-08 39.4 9.2 123 54-187 70-212 (241) 7 d2p5ia1 d.104.1.3 (A:14-278) H 96.8 0.0014 1E-07 39.1 5.9 122 54-184 79-234 (265) 8 d1x2ga2 d.104.1.3 (A:1-246) Tw 96.5 0.018 1.3E-06 32.1 9.8 120 52-185 70-212 (246) 9 d2c8ma1 d.104.1.3 (A:1-256) Li 96.0 0.023 1.6E-06 31.5 8.3 123 52-185 72-223 (256) 10 d1w66a1 d.104.1.3 (A:1-216) Li 95.2 0.049 3.6E-06 29.4 7.7 123 53-185 75-212 (216) 11 d2ddza1 d.104.1.4 (A:3-190) Un 91.2 0.18 1.3E-05 25.8 5.2 91 84-185 85-175 (188) 12 d1d3bb_ b.38.1.1 (B:) B core S 87.7 0.43 3.2E-05 23.5 4.9 35 203-237 3-38 (81) 13 d1h641_ b.38.1.1 (1:) Archaeal 84.9 0.98 7.1E-05 21.3 5.5 46 205-251 9-59 (71) 14 d1i4k1_ b.38.1.1 (1:) Archaeal 83.4 0.94 6.8E-05 21.4 4.8 46 205-251 10-60 (72) 15 d1th7a1 b.38.1.1 (A:3-78) Arch 82.5 1.2 8.8E-05 20.7 5.2 45 205-251 14-64 (76) 16 d1i8fa_ b.38.1.1 (A:) Archaeal 82.1 1.1 8.2E-05 20.9 4.8 34 205-238 9-43 (71) 17 d1mgqa_ b.38.1.1 (A:) Archaeal 81.0 1.5 0.00011 20.2 6.8 46 205-251 13-63 (74) 18 d1d3ba_ b.38.1.1 (A:) D3 core 76.8 2 0.00014 19.4 6.8 45 205-251 9-59 (72) 19 d1ljoa_ b.38.1.1 (A:) Archaeal 75.8 2.1 0.00015 19.3 7.0 47 205-251 12-63 (75) 20 d2fwka1 b.38.1.1 (A:24-115) U6 72.7 2 0.00014 19.4 3.9 34 206-239 13-47 (92) 21 d2qqra2 b.34.9.1 (A:956-1011) 71.5 1.8 0.00013 19.6 3.4 46 207-252 4-50 (56) 22 d1b34a_ b.38.1.1 (A:) D1 core 66.5 3.4 0.00025 17.9 5.5 45 205-251 8-58 (80) 23 d1n9ra_ b.38.1.1 (A:) Small nu 65.1 3.6 0.00026 17.8 5.0 34 205-238 3-38 (68) 24 d1m5q1_ b.38.1.1 (1:) Sm-Like 51.8 6 0.00044 16.4 6.3 31 206-236 8-39 (127) 25 d1o5ua_ b.82.1.8 (A:) Hypothet 47.5 4 0.00029 17.5 1.7 22 230-251 44-65 (88) 26 d2d6fa1 b.38.3.1 (A:2-73) Glut 40.6 9 0.00065 15.3 5.3 51 195-245 5-58 (72) 27 d1b34b_ b.38.1.1 (B:) D2 core 31.8 12 0.0009 14.4 5.6 34 205-238 11-45 (93) 28 d1ib8a1 b.38.2.1 (A:91-164) Hy 21.7 19 0.0014 13.3 6.1 35 201-236 7-46 (74) No 1 >d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=0 Score=337.63 Aligned_cols=188 Identities=28% Similarity=0.435 Sum_probs=166.8 Q ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHCCCHHHHHHHH Q ss_conf 7049998164856899999997399997899982446783679985316633-334132235322400021013779999 Q gi|254780868|r 13 SFRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKG-NLYASLLLIDSISKDSLTLLSFAIAVA 91 (252) Q Consensus 13 ~~~i~~~~~~~STn~~~~~~~~~~~~~~~~v~A~~Qt~GrGr~gr~W~s~~G-~l~~S~~~~~~~~~~~~~~l~~~~~~a 91 (252) ++++.+||++||||+++++++.+. +++++|+|++||+||||+||.|+||+| +||+|++++++.+....+.+++++|+| T Consensus 15 ~~~i~~~~~i~STn~~~~~~~~~~-~~~~vv~A~~QT~GrGR~gr~W~S~~G~~l~~S~~~~~~~~~~~~~~l~~~~~la 93 (207) T d1biaa3 15 GGSVAVLPVIDSTNQYLLDRIGEL-KSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIV 93 (207) T ss_dssp SSCEEECSSBSCHHHHHHTTGGGC-CTTCEEEESCBTTC---------CCTTSEEEEEEEEEECC-CCCTHHHHHHHHHH T ss_pred CCCEEEEECCCCHHHHHHHHHHCC-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 985899802484999999861437-9984999893456788699824466566654122100246704431034577888 Q ss_pred HHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC--CC-CCCCCCCCCCCCCC Q ss_conf 9999997445421024621465067102211222233232258326765215444446422--33-65321002367789 Q gi|254780868|r 92 MRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPVD--TP-YPVTSLQREGGCID 168 (252) Q Consensus 92 i~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~~~--~~-~~~tsL~~~~~~~~ 168 (252) ++++++.+. +.++++|||||||+++||+||||+|+....+...++|||||||++..+.+ .+ .+++++.+.+..++ T Consensus 94 v~~~l~~~~--~~~~~iKWPNDIl~~~kKi~GIL~E~~~~~~~~~~vviGiGiNv~~~~~~~~~~~~~~s~l~~~~~~i~ 171 (207) T d1biaa3 94 MAEVLRKLG--ADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESVVNQGWITLQEAGINLD 171 (207) T ss_dssp HHHHHHHTT--CTTCEEETTTEEEETTEEEEEEEEEEEC----CEEEEEEEEEECCC-----------CCCTTTTTCCCC T ss_pred HHHHHHHCC--CCEEEEEECHHHHCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCC T ss_conf 888876314--530335533155458875104147777516872113541033323688860001012578998689999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 789998777999999998730355648899999875 Q gi|254780868|r 169 LKDIFSLLFQDVARVLDLWKKDTGREEIMNLWRCFA 204 (252) Q Consensus 169 ~~~l~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 204 (252) ++++++.++.++..+++.|.+ .+|++++++|++++ T Consensus 172 ~~~l~~~ll~~l~~~l~~~~~-~gf~~~~~~w~~~D 206 (207) T d1biaa3 172 RNTLAAMLIRELRAALELFEQ-EGLAPYLSRWEKLD 206 (207) T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HTTGGGHHHHHHHB T ss_pred HHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHC T ss_conf 999999999999999999997-39899999999743 No 2 >d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=100.00 E-value=0 Score=311.88 Aligned_cols=179 Identities=32% Similarity=0.455 Sum_probs=155.8 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHH Q ss_conf 99704999816485689999999739999789998244678367998531663333413223532240002101377999 Q gi|254780868|r 11 PYSFRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAV 90 (252) Q Consensus 11 p~~~~i~~~~~~~STn~~~~~~~~~~~~~~~~v~A~~Qt~GrGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ 90 (252) ..+.+++|||+++||||+|++. ..+++++|+|++||+||||+||.|+||+|++|+|++++++.+...++.+++++|+ T Consensus 8 ~iG~~i~~~~~v~STn~~a~~~---~~~~~~vv~a~~Qt~GrGR~gr~W~sp~g~l~~S~~~~~~~~~~~~~~l~~~~~~ 84 (188) T d2zgwa2 8 IIGRRVIYFQEITSTNEFAKTS---YLEEGTVIVADKQTMGHGALNRKWESPEGGLWLSIVLSPKVPQKDLPKIVFLGAV 84 (188) T ss_dssp STTSEEEEESSBSCHHHHHHHS---CCCTTCEEEESCBSSCBCGGGCBCCCCTTSEEEEEEECCCSCTTTGGGHHHHHHH T ss_pred HHCCEEEEECCCCCHHHHHHHC---CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH T ss_conf 6378699948678879999860---9989809998965778877998786985221317886213312455556677777 Q ss_pred HHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCH Q ss_conf 999999974454210246214650671022112222332322583267652154444464223365321002-3677897 Q gi|254780868|r 91 AMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPVDTPYPVTSLQR-EGGCIDL 169 (252) Q Consensus 91 ai~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~~~~~~~~tsL~~-~~~~~~~ 169 (252) +++++++.+ +.++++|||||||+++||+||||+|+.. .++|||||||+++.+ +.++||+.. .+..+++ T Consensus 85 av~~~l~~~---~~~~~iKWPNDI~~~~kKi~GILiE~~~-----~~~iiGiGiNvn~~~---~~~atsl~~~~~~~~~~ 153 (188) T d2zgwa2 85 GVVETLKEF---SIDGRIKWPNDVLVNYKAIAGVLVEGKG-----DKIVLGIGLNVNNKV---PNGATSMKLELGSEVPL 153 (188) T ss_dssp HHHHHHHHT---TCCCEEETTTEEEETTEEEEEEEEEESS-----SCEEEEEEECSSSCC---CTTCCCHHHHHSSCCCH T ss_pred HHHHHHHHC---CCCEEEEECCHHEECCCCEEEEEEECCC-----CEEEEEEEEECCCCC---CCCCCCHHHHHCCCCCH T ss_conf 788764310---4102678742212688723799871346-----659998876548879---98750099986899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 899987779999999987303556488999998752 Q gi|254780868|r 170 KDIFSLLFQDVARVLDLWKKDTGREEIMNLWRCFAC 205 (252) Q Consensus 170 ~~l~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 205 (252) +++++.++..+.+.+..|.++ +++ +++.|++++. T Consensus 154 ~~l~~~l~~~l~~~~~~~~~~-~~~-~~~~~~~~~l 187 (188) T d2zgwa2 154 LSVFRSLITNLDRLYLNFLKN-PMD-ILNLVRDNMI 187 (188) T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTH-HHHHHHHTBC T ss_pred HHHHHHHHHHHHHHHHHHHCC-CHH-HHHHHHHHHC T ss_conf 999999999999999999838-947-9999998506 No 3 >d1biaa2 b.34.1.1 (A:271-317) Biotin repressor/biotin holoenzyme synthetase, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=98.53 E-value=7.2e-08 Score=65.75 Aligned_cols=45 Identities=27% Similarity=0.365 Sum_probs=42.0 Q ss_pred CCCCEEEEEECCEEEEEEEEEECCCCCEEEECCCCCEEEEEEEEEC Q ss_conf 3897799997993899999987698748999699989999963110 Q gi|254780868|r 206 GIGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKGCVRQIFTGDIF 251 (252) Q Consensus 206 ~~gk~V~i~~~~~~~~G~~~gId~~G~L~i~~~~G~~~~i~sGeI~ 251 (252) ++||+|++..++++++|++.|||++|+|+|++++| ++.|+||||- T Consensus 1 f~gk~V~v~~g~~~i~G~a~gId~~G~Lll~t~~g-~~~~~sGEVS 45 (47) T d1biaa2 1 FINRPVKLIIGDKEIFGISRGIDKQGALLLEQDGI-IKPWMGGEIS 45 (47) T ss_dssp TTTSEEEEEETTEEEEEEEEEECTTSCEEEEETTE-EEEESSCEEE T ss_pred CCCCEEEEEECCEEEEEEEEEECCCCCEEEEECCC-EEEEEEEEEE T ss_conf 98989999979969999995399997499997998-8999999899 No 4 >d2zgwa1 b.34.1.1 (A:189-235) Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=97.31 E-value=0.00024 Score=43.81 Aligned_cols=41 Identities=34% Similarity=0.575 Sum_probs=36.5 Q ss_pred CEEEEEECCEEEEEEEEEECCCCCEEEECCCCCEEEEEEEEE Q ss_conf 779999799389999998769874899969998999996311 Q gi|254780868|r 209 DLITIKLSYGSILGRFVGVDDFGYLLLEEKKGCVRQIFTGDI 250 (252) Q Consensus 209 k~V~i~~~~~~~~G~~~gId~~G~L~i~~~~G~~~~i~sGeI 250 (252) -.|++ .++++++|++.+||+.|+|+++.++|..+++..||| T Consensus 2 v~vki-l~dg~~egiaedide~grli~rl~~g~vkki~ygdv 42 (47) T d2zgwa1 2 VRVKI-LGDGSFEGIAEDIDDFGRLIIRLDSGEVKKVIYGDV 42 (47) T ss_dssp SEEEE-ESSSEEEEEEEEECTTSCEEEECTTSCEEEECSSSC T ss_pred CCEEE-ECCCCEECHHHHHHHHCEEEEEECCCCEEEEEEEEE T ss_conf 70799-548725015450664401899924893889998227 No 5 >d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Probab=97.29 E-value=0.00027 Score=43.49 Aligned_cols=138 Identities=17% Similarity=0.130 Sum_probs=80.7 Q ss_pred CCEEEEECCCCC-------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HCCCHHHHHHHHHHHHHHH Q ss_conf 978999824467-------------------83679985316633334132235322400-0210137799999999997 Q gi|254780868|r 39 GNLWIVASCQTA-------------------GRGRRDNKWISDKGNLYASLLLIDSISKD-SLTLLSFAIAVAMRSVIAS 98 (252) Q Consensus 39 ~~~~v~A~~Qt~-------------------GrGr~gr~W~s~~G~l~~S~~~~~~~~~~-~~~~l~~~~~~ai~~~l~~ 98 (252) ++++++-.+|+. =|-+.|..=+-.+|+|.+|++++...... .....-...+-.+.++++. T Consensus 52 ~ptvvlG~~q~~~~~~e~~~~~~~~~gi~vvRR~sGGgaV~hd~G~l~~s~i~p~~~~~~~~i~~~y~~~~~~i~~~L~~ 131 (269) T d2p0la1 52 TKTVILGMLDRELPHLELAKKEIISRGYEPVVRNFGGLAVVADEGILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSD 131 (269) T ss_dssp SSEEEECTTGGGCTTHHHHHHHHHTTTCEEEECTTCCSCEEESTTEEEEEEEEESCC---CCHHHHHHHHHHHHHHHTTT T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 99899898767682188889999985995899657986699889967999997055335899999999999999999997 Q ss_pred HCCCCCEEEEEEC--------CCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC-----------------C-- Q ss_conf 4454210246214--------650671022112222332322583267652154444464-----------------2-- Q gi|254780868|r 99 TLPVGTDVKIKWP--------NDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCP-----------------V-- 151 (252) Q Consensus 99 ~~~~~~~~~iKWP--------NDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~-----------------~-- 151 (252) + |+++...-+ |||.++++|++|.=- .... ..+..+..|+++... . T Consensus 132 l---Gi~a~~~~~~~~~c~g~~Dl~v~grKi~G~Aq-r~~r----~~~l~hgtllv~~d~~~~~~ll~~~~~~~~~~~~~ 203 (269) T d2p0la1 132 F---YQPIEHFEVETSYCPGKFDLSINGKKFAGLAQ-RRIK----NGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGS 203 (269) T ss_dssp S---CSCCEECCCTTSSSCCTTCEEETTEEEEEEEE-EEET----TEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCC T ss_pred C---CCCEEEECCCCCCCCCCEEEEECCEEEEEEEE-EEEC----CEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCC T ss_conf 5---97368713567778775357744727998767-8988----88999999997078899999987777630464454 Q ss_pred ------CCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHH Q ss_conf ------23365321002-3677897899987779999999 Q gi|254780868|r 152 ------DTPYPVTSLQR-EGGCIDLKDIFSLLFQDVARVL 184 (252) Q Consensus 152 ------~~~~~~tsL~~-~~~~~~~~~l~~~l~~~l~~~~ 184 (252) -.+...|+|.+ .+..++.+++...++..|.... T Consensus 204 ~~~~~~~~~~~vtsL~~~L~~~~s~e~v~~~l~~~f~~~~ 243 (269) T d2p0la1 204 PIAYPNVDPEIMANLSDLLDCPMTVEDVIDRMLISLKQVG 243 (269) T ss_dssp SSCCCCCCTTSBCCHHHHTTCCCCHHHHHHHHHHHHHHHT T ss_pred CCCCCCCCHHHEEEHHHHCCCCCCHHHHHHHHHHHHHHHC T ss_conf 3335765501213599873999999999999999999972 No 6 >d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Probab=97.26 E-value=0.0012 Score=39.37 Aligned_cols=123 Identities=14% Similarity=0.045 Sum_probs=76.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCC Q ss_conf 79985316633334132235322400021013779999999999744542102462146506710221122223323225 Q gi|254780868|r 54 RRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKN 133 (252) Q Consensus 54 r~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~ 133 (252) +.|..=+-.+|++.+|++++.+.+... .-....-+++++++.+ +.++...=+||+.+++||++|+-.-. .. T Consensus 70 tGGgaV~h~~g~~~~s~i~~~~~~~~~---~~~~~~~~i~~al~~~---g~~a~~~~~~d~~v~g~Ki~G~aq~~---~~ 140 (241) T d1vqza2 70 SGGGAVYHDLNNLNYTIISKEDENKAF---DFKSFSTPVINTLAQL---GVKAEFTGRNDLEIDGKKFCGNAQAY---IN 140 (241) T ss_dssp SCSCCEEECTTEEEEEEEEECCTTCCC---SHHHHHHHHHHHHHHT---TCCEEEETTTEEEETTEEEEEEEEEE---ET T ss_pred CCCCEEEECCCCEEEEEEECCCCCHHH---HHHHHHHHHHHHHHHH---CCCEEEECCCCEEECCEEEEEEEEEE---EC T ss_conf 898638977997489999637654377---8999999999999984---46608822587798787876678998---68 Q ss_pred CCEEEEEECCCCCCCCCC-----------CC--------CCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 832676521544444642-----------23--------365321002-3677897899987779999999987 Q gi|254780868|r 134 GLQAVVVGIGLNVKHCPV-----------DT--------PYPVTSLQR-EGGCIDLKDIFSLLFQDVARVLDLW 187 (252) Q Consensus 134 ~~~~~viGiGiNi~~~~~-----------~~--------~~~~tsL~~-~~~~~~~~~l~~~l~~~l~~~~~~~ 187 (252) ..++.+.-|++...++ .. ....|+|.. .+..++.+++.+.+++.+.+.+..+ T Consensus 141 --~~~l~hgsll~~~d~~~~~~~l~~~~~~~~~~~~~s~~~~v~~l~~~l~~~~~~e~~~~~l~~~f~~~~~~~ 212 (241) T d1vqza2 141 --GRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYPEM 212 (241) T ss_dssp --TEEEEEEEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCTTC T ss_pred --CEEEEEEEEEECCCHHHHHHHHCCCCCCCHHHCCCCCHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf --839999898715999999998488964331214522032111658771899999999999999999974888 No 7 >d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Probab=96.78 E-value=0.0014 Score=39.06 Aligned_cols=122 Identities=18% Similarity=0.090 Sum_probs=68.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEE--------ECCCEEEECCCCCCCC Q ss_conf 79985316633334132235322400021013779999999999744542102462--------1465067102211222 Q gi|254780868|r 54 RRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIK--------WPNDILVFQRKIAGIL 125 (252) Q Consensus 54 r~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iK--------WPNDi~~~~kKi~GIL 125 (252) +.|..=+-.+|++.+|++++.+.+.. ....--.++-.+.++++.+ |+++.++ =.|||.++++||+|+= T Consensus 79 tGGgaV~hd~g~l~~s~i~~~~~~~~-~~~~y~~~~~~i~~~l~~l---Gi~a~~~~~~~~~c~g~~Dl~v~g~Ki~G~A 154 (265) T d2p5ia1 79 SGGLAVVLDSGILNLSLVLKEEKGFS-IDDGYELMYELICSMFQDH---REQIEAREIVGSYCPGSYDLSIDGKKFAGIS 154 (265) T ss_dssp SCCCCEEECTTEEEEEEEEECCTTCC-HHHHHHHHHHHHHHHTC------CCCEECCCTTSSSCCTTCEEETTEEEEEEE T ss_pred CCCCEEEECCCCCEEEEEECCCCCCC-HHHHHHHHHHHHHHHHHHC---CCCEEECCCCCCCCCCCCCEEECCEEEEEEE T ss_conf 89955997699818999974344531-7899999999999999972---9742774666777988774688888999876 Q ss_pred CCCCCCCCCCEEEEEECCCCCCCC----------C---------------CCCCCCCCCCCC-CCCCCCHHHHHHHHHHH Q ss_conf 233232258326765215444446----------4---------------223365321002-36778978999877799 Q gi|254780868|r 126 IETLNLKNGLQAVVVGIGLNVKHC----------P---------------VDTPYPVTSLQR-EGGCIDLKDIFSLLFQD 179 (252) Q Consensus 126 ~E~~~~~~~~~~~viGiGiNi~~~----------~---------------~~~~~~~tsL~~-~~~~~~~~~l~~~l~~~ 179 (252) - ....+ .+...--|.+... | ...+...|+|.+ .+..++.+++...++.. T Consensus 155 q-~~~~~----~~l~hgsll~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vtsL~~~l~~~~~~~~v~~~l~~~ 229 (265) T d2p5ia1 155 Q-RRIRG----GVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLLKALMT 229 (265) T ss_dssp E-EEETT----EEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSCCCHHHHHHHHHHH T ss_pred E-EEECC----EEEEEEEEEECCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHCCCHHHHHCCCCCHHHHHHHHHHH T ss_conf 7-89888----899998999648989999997123222211356433456642220276999848999999999999999 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254780868|r 180 VARVL 184 (252) Q Consensus 180 l~~~~ 184 (252) |.... T Consensus 230 f~~~~ 234 (265) T d2p5ia1 230 LQQHG 234 (265) T ss_dssp HHHTT T ss_pred HHHHC T ss_conf 99856 No 8 >d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=96.46 E-value=0.018 Score=32.10 Aligned_cols=120 Identities=13% Similarity=0.038 Sum_probs=71.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEE----CCCCCCCCCC Q ss_conf 367998531663333413223532240002101377999999999974454210246214650671----0221122223 Q gi|254780868|r 52 RGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVF----QRKIAGILIE 127 (252) Q Consensus 52 rGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iKWPNDi~~~----~kKi~GIL~E 127 (252) |-+.|..=+-.+|++.+|++.+.+.. ......-.+.++++.+ +.++.++=-||++++ +|||+|+=.- T Consensus 70 R~tGGgaV~hd~g~~~~s~i~~~~~~------~~~~~~~~i~~~l~~l---gi~a~~~~~~~~~~~~~~~gkKi~G~aq~ 140 (246) T d1x2ga2 70 RSSGGGAVFHDLGNTCFTFMAGKPEY------DKTISTSIVLNALNAL---GVSAEASGRNDLVVKTVEGDRKVSGSAYR 140 (246) T ss_dssp CSSCCCCEEECTTEEEEEEEEETTTC------CHHHHHHHHHHHHHHT---TCCEEEETTTEEEECCTTCCEEEEEEEEE T ss_pred ECCCCCEEEECCCCEEEEEEECCCHH------HHHHHHHHHHHHHHHC---CCCEEECCCCCEEEECCCCCEEEEEEEEE T ss_conf 76887279967999899997557246------1999999999988861---88336668554367314686179767799 Q ss_pred CCCCCCCCEEEEEECCCCCCCCCC-----------CC--------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 323225832676521544444642-----------23--------36532100236778978999877799999999 Q gi|254780868|r 128 TLNLKNGLQAVVVGIGLNVKHCPV-----------DT--------PYPVTSLQREGGCIDLKDIFSLLFQDVARVLD 185 (252) Q Consensus 128 ~~~~~~~~~~~viGiGiNi~~~~~-----------~~--------~~~~tsL~~~~~~~~~~~l~~~l~~~l~~~~~ 185 (252) .. . ..++.+.-|++...++ .. ....|+|.+....++.+++.+.|++.+...+. T Consensus 141 ~~-~----~~~l~hgsi~~~~d~~~~~~~l~~~~~~~~~~~~~s~~~~vt~l~e~~~~i~~e~~~~~l~~~f~~~~~ 212 (246) T d1x2ga2 141 ET-K----DRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYG 212 (246) T ss_dssp EC-S----SEEEEEEEEESSCCSSGGGGGBCCCHHHHHCCC------CBCCGGGTCTTCCHHHHHHHHHHHHHHHHT T ss_pred EE-C----CEEEEECEEEECCCHHHHHHHCCCCCCCHHHHCCCCHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHC T ss_conf 98-9----999990788656997897765088941113310343266476799967999999999999999999848 No 9 >d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Probab=95.98 E-value=0.023 Score=31.49 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=70.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEE----------ECCCEEEECCCC Q ss_conf 3679985316633334132235322400021013779999999999744542102462----------146506710221 Q gi|254780868|r 52 RGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIK----------WPNDILVFQRKI 121 (252) Q Consensus 52 rGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iK----------WPNDi~~~~kKi 121 (252) |-+.|..=+-.+|++.+|++++.+-. .....--.+.-++.++++.+. +++.+. =++|+.++++|+ T Consensus 72 R~tGGgaV~hd~g~l~~s~i~~~~~~--~~~~~y~~~~~~i~~~l~~lG---i~a~~~~~~~~~~~~~~~~di~~~~~Ki 146 (256) T d2c8ma1 72 RYTGGGAVYHDLGDLNFSVVRSSDDM--DITSMFRTMNEAVVNSLRILG---LDARPGELNDVSIPVNKKTDIMAGEKKI 146 (256) T ss_dssp CSSCSCCEEECTTEEEEEEEEECSSC--CHHHHHHHHHHHHHHHHHHTT---CCCEECCBCCTTSSSSBTTSEEETTEEE T ss_pred EECCCCEEEECCCCEEEEEEECCCCC--CHHHHHHHHHHHHHHHHHHCC---CEEEECCCCCEEEEECCCCCCCCCCCEE T ss_conf 70698628978998499999715899--999999999999999876528---0378868587089820477654554334 Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCC-----------CCC--------CCCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 12222332322583267652154444464-----------223--------36532100236778978999877799999 Q gi|254780868|r 122 AGILIETLNLKNGLQAVVVGIGLNVKHCP-----------VDT--------PYPVTSLQREGGCIDLKDIFSLLFQDVAR 182 (252) Q Consensus 122 ~GIL~E~~~~~~~~~~~viGiGiNi~~~~-----------~~~--------~~~~tsL~~~~~~~~~~~l~~~l~~~l~~ 182 (252) +|.-.-.. . ..++.+..|+++... ... ....|+|... ..++.+++...+++.|.+ T Consensus 147 ~G~a~~~~---~--~~~l~hgtll~~~d~~~l~~~L~~~~~~~~~~~~~s~~~~vt~L~~~-~~~~~e~~~~~l~~~f~~ 220 (256) T d2c8ma1 147 MGAAGAMR---K--GAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDF-VDVSIDEVRNALIRGFSE 220 (256) T ss_dssp EEEEEEEE---T--TEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGT-SCCCHHHHHHHHHHHHHH T ss_pred CCCCCCCC---C--CEEEEEEEEECCCCHHHHHHHHCCCCCCHHHHCCCCHHHHCCCHHHC-CCCCHHHHHHHHHHHHHH T ss_conf 03222213---5--17999867403799999998758895010320355447533048762-898999999999999999 Q ss_pred HHH Q ss_conf 999 Q gi|254780868|r 183 VLD 185 (252) Q Consensus 183 ~~~ 185 (252) .+. T Consensus 221 ~~~ 223 (256) T d2c8ma1 221 TLH 223 (256) T ss_dssp HHT T ss_pred HHC T ss_conf 858 No 10 >d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Probab=95.20 E-value=0.049 Score=29.38 Aligned_cols=123 Identities=18% Similarity=0.165 Sum_probs=76.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEC--CCEEEECC---CCCCCCCC Q ss_conf 67998531663333413223532240002101377999999999974454210246214--65067102---21122223 Q gi|254780868|r 53 GRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWP--NDILVFQR---KIAGILIE 127 (252) Q Consensus 53 Gr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iKWP--NDi~~~~k---Ki~GIL~E 127 (252) .|.|...+-.||.|-+-.++....... ....--..--++.++++.+ +.+.. +-| ..++++++ |||-|=+. T Consensus 75 dRGG~vTyHGPGQlV~Ypil~l~~~~~-~~~~v~~le~~ii~~l~~~---gi~~~-~~~~~~GVwv~~~~~~KIasiGv~ 149 (216) T d1w66a1 75 DRGGKITWHGPGQLVGYPIIGLAEPLD-VVNYVRRLEESLIQVCADL---GLHAG-RVDGRSGVWLPGRPARKVAAIGVR 149 (216) T ss_dssp SSSSSEEEECTTEEEEEEECBBCSSCC-HHHHHHHHHHHHHHHHHHT---TCCCE-EETTEEEEEECSSSCEEEEEEEEE T ss_pred CCCCEEEEECCCCEEEEEEECCCCCCC-HHHHHHHHHHHHHHHHHHC---CCCCC-CCCCCCCEEEECCHHHHHHHHHHH T ss_conf 788527774377456677761211221-3566777889999998751---44211-224677501211015678899977 Q ss_pred CCCCCCCCEEEEEECCCCCCCCCC--------CC-CCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 323225832676521544444642--------23-365321002-36778978999877799999999 Q gi|254780868|r 128 TLNLKNGLQAVVVGIGLNVKHCPV--------DT-PYPVTSLQR-EGGCIDLKDIFSLLFQDVARVLD 185 (252) Q Consensus 128 ~~~~~~~~~~~viGiGiNi~~~~~--------~~-~~~~tsL~~-~~~~~~~~~l~~~l~~~l~~~~~ 185 (252) .. ..+ .-=|+.||++.+.. .+ +..+|||+. .+..++.+++...+...|.+.++ T Consensus 150 v~---~~v--t~HG~alNv~~dL~~f~~I~pCGl~~~~vtSl~~~lg~~v~~~ev~~~l~~~~~~~f~ 212 (216) T d1w66a1 150 VS---RAT--TLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALD 212 (216) T ss_dssp EE---TTE--EEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHT T ss_pred HC---CCE--EECCEEEECCCCHHHCCEEECCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 50---362--5213578525775546907857999992664179968999899999999999999861 No 11 >d2ddza1 d.104.1.4 (A:3-190) Uncharacterized protein PH0223 {Pyrococcus horikoshii [TaxId: 53953]} Probab=91.25 E-value=0.18 Score=25.82 Aligned_cols=91 Identities=19% Similarity=0.233 Sum_probs=54.3 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC Q ss_conf 13779999999999744542102462146506710221122223323225832676521544444642233653210023 Q gi|254780868|r 84 LSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPVDTPYPVTSLQRE 163 (252) Q Consensus 84 l~~~~~~ai~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~~~~~~~~tsL~~~ 163 (252) .+-+....+++.|.+. +.++. +==-|||++++|+.=-..- .+.....+=.|||+...-.-.+-++.+|.+. T Consensus 85 ~QRLl~~~~~evL~~~---g~~~~-r~GDDLyv~~~KlSVSIA~-----~s~~s~~iH~GINV~~~g~p~~v~a~~L~d~ 155 (188) T d2ddza1 85 LQKLLIARLVELLWNY---GIEAS-RRGDDIYVNGRKLSISIAT-----VSPVSIKIHIGLNVKTVGVPPGVDAIGLEEL 155 (188) T ss_dssp HHHHHHHHHHHHHHTT---TCCEE-EETTEEEETTEECEEEEEE-----ECSSCEEEEEEEESCCSSCCSSSCBCCHHHH T ss_pred HHHHHHHHHHHHHHHC---CCCEE-ECCCEEEECCCEEEEEEEE-----ECCCCEEEEEEEEEECCCCCCCCCEECHHHC T ss_conf 9999999999999973---98537-6278379839778999996-----0688248898788761674787512016432 Q ss_pred CCCCCHHHHHHHHHHHHHHHHH Q ss_conf 6778978999877799999999 Q gi|254780868|r 164 GGCIDLKDIFSLLFQDVARVLD 185 (252) Q Consensus 164 ~~~~~~~~l~~~l~~~l~~~~~ 185 (252) +. +.+++...+...+..-++ T Consensus 156 g~--d~~~fm~~v~~~y~~E~~ 175 (188) T d2ddza1 156 GI--DPTEFMERSAKALVEEIE 175 (188) T ss_dssp TC--CHHHHHHHHHHHHHHHHH T ss_pred CC--CHHHHHHHHHHHHHHHHH T ss_conf 88--999999999999999988 No 12 >d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]} Probab=87.74 E-value=0.43 Score=23.49 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=30.4 Q ss_pred HHHCCCCEEEEEECCE-EEEEEEEEECCCCCEEEEC Q ss_conf 7523897799997993-8999999876987489996 Q gi|254780868|r 203 FACGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEE 237 (252) Q Consensus 203 ~~~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~ 237 (252) ...+++++|.+...++ .+.|++.+.|..+.|++.+ T Consensus 3 L~~~l~~rv~V~l~dgR~~~G~L~~~D~~~NlvL~~ 38 (81) T d1d3bb_ 3 MLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCD 38 (81) T ss_dssp CGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEE T ss_pred HHHHCCCEEEEEECCCCEEEEEEEEECCCCCEEECC T ss_conf 498789979999849989999999987866889858 No 13 >d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]} Probab=84.93 E-value=0.98 Score=21.28 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=34.2 Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC----CCCEEEEEEEEEC Q ss_conf 23897799997993-89999998769874899969----9989999963110 Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK----KGCVRQIFTGDIF 251 (252) Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~----~G~~~~i~sGeI~ 251 (252) ..+|+.|.+...++ .+.|++.+.|+...|.+++. ++. +....|.+| T Consensus 9 ~~~~~~V~V~lk~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~-~~~~l~~~~ 59 (71) T d1h641_ 9 RSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGE-VVKRYGKIV 59 (71) T ss_dssp TTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTE-EEEEEEEEE T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCC-CEEECCCEE T ss_conf 868997999996999999999999899994992599994688-372957199 No 14 >d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]} Probab=83.36 E-value=0.94 Score=21.40 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=33.8 Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC----CCCEEEEEEEEEC Q ss_conf 23897799997993-89999998769874899969----9989999963110 Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK----KGCVRQIFTGDIF 251 (252) Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~----~G~~~~i~sGeI~ 251 (252) ..+|+.|.+...++ .+.|++.+.|+...+.+++. .+. +.-.-|.+| T Consensus 10 ~~~~~~V~V~lk~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~-~~~~~g~~~ 60 (72) T d1i4k1_ 10 RSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGE-VVRKVGSVV 60 (72) T ss_dssp TTTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEESSSS-EEEEEEEEE T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCC-EEEECCEEE T ss_conf 868987999988999999999999599985993499991697-185946199 No 15 >d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein {Sulfolobus solfataricus [TaxId: 2287]} Probab=82.55 E-value=1.2 Score=20.71 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=33.4 Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEEC-----CCCCEEEEEEEEEC Q ss_conf 23897799997993-8999999876987489996-----99989999963110 Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEE-----KKGCVRQIFTGDIF 251 (252) Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~-----~~G~~~~i~sGeI~ 251 (252) ..+|+.|.+...++ .+.|++.+.|+...+++++ .+++.+ .-|.+| T Consensus 14 ~~~~~~V~V~lk~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~--~~~~v~ 64 (76) T d1th7a1 14 ESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGK--KLGTIV 64 (76) T ss_dssp HHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEE--EEEEEE T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCC--CCCEEE T ss_conf 867987999988999999999999799987985799993689621--914599 No 16 >d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Probab=82.12 E-value=1.1 Score=20.92 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=29.3 Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC Q ss_conf 23897799997993-89999998769874899969 Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK 238 (252) Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~ 238 (252) ..+|++|.+...++ .+.|++.+.|+...+.+++. T Consensus 9 ~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNivL~~~ 43 (71) T d1i8fa_ 9 DSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDA 43 (71) T ss_dssp TTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEE T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCCCEEECCE T ss_conf 75798799999799999999999978700499109 No 17 >d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=81.00 E-value=1.5 Score=20.21 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=34.1 Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC----CCCEEEEEEEEEC Q ss_conf 23897799997993-89999998769874899969----9989999963110 Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK----KGCVRQIFTGDIF 251 (252) Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~----~G~~~~i~sGeI~ 251 (252) ..+|+.|.+...++ .+.|++.+.|+...+.+++. .+. +....|++| T Consensus 13 ~~~~k~V~V~lk~g~~~~G~L~~~D~~mNl~L~~~~e~~~~~-~~~~~~~~~ 63 (74) T d1mgqa_ 13 NSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGE-VTRRLGTVL 63 (74) T ss_dssp HTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTE-EEEEEEEEE T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCC-EEEECCEEE T ss_conf 858986999987999999999999799985993499993798-082846099 No 18 >d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]} Probab=76.77 E-value=2 Score=19.41 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=34.0 Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC-----CCCEEEEEEEEEC Q ss_conf 23897799997993-89999998769874899969-----9989999963110 Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK-----KGCVRQIFTGDIF 251 (252) Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~-----~G~~~~i~sGeI~ 251 (252) ...|+.|.++..++ ++.|+..++|+.-.+.+++. +|+. ...+++| T Consensus 9 ~~~g~~V~VeLkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~--~~~~~v~ 59 (72) T d1d3ba_ 9 EAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRV--AQLEQVY 59 (72) T ss_dssp HTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCE--EEEEEEE T ss_pred HCCCCEEEEEECCCEEEEEEEEEECCCEEEEEEEEEEECCCCCE--EECCEEE T ss_conf 60899999998998399998999948725899799998689847--3948699 No 19 >d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]} Probab=75.85 E-value=2.1 Score=19.25 Aligned_cols=47 Identities=28% Similarity=0.514 Sum_probs=34.0 Q ss_pred HCCCCEEEEEEC-CE-EEEEEEEEECCCCCEEEECC---CCCEEEEEEEEEC Q ss_conf 238977999979-93-89999998769874899969---9989999963110 Q gi|254780868|r 205 CGIGDLITIKLS-YG-SILGRFVGVDDFGYLLLEEK---KGCVRQIFTGDIF 251 (252) Q Consensus 205 ~~~gk~V~i~~~-~~-~~~G~~~gId~~G~L~i~~~---~G~~~~i~sGeI~ 251 (252) ..+|++|.+... ++ .+.|+..+.|+...+.+++. ....+...-|++| T Consensus 12 ~~~~~~V~V~lk~~~~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~ 63 (75) T d1ljoa_ 12 SMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIV 63 (75) T ss_dssp HTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEE T ss_pred HHCCCEEEEEEECCCEEEEEEEEEECCCCCEEEEEEEEECCCCCEEECCEEE T ss_conf 8669899999978999999999998698847996799991788582846399 No 20 >d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein LSM5 {Cryptosporidium parvum [TaxId: 5807]} Probab=72.69 E-value=2 Score=19.39 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=28.7 Q ss_pred CCCCEEEEEECCE-EEEEEEEEECCCCCEEEECCC Q ss_conf 3897799997993-899999987698748999699 Q gi|254780868|r 206 GIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEKK 239 (252) Q Consensus 206 ~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~~ 239 (252) .+|++|.+...++ .+.|++.+.|....|++++.. T Consensus 13 ~l~k~V~V~l~~gr~~~G~L~~~D~~~NlvL~d~~ 47 (92) T d2fwka1 13 CIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQ 47 (92) T ss_dssp TBTSBCEEEETTTEEECCEEEEECTTCCEEEESCC T ss_pred HCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEE T ss_conf 76987999986999999999999589997981479 No 21 >d2qqra2 b.34.9.1 (A:956-1011) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]} Probab=71.48 E-value=1.8 Score=19.63 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=31.0 Q ss_pred CCCEEEEEECCEE-EEEEEEEECCCCCEEEECCCCCEEEEEEEEECC Q ss_conf 8977999979938-999999876987489996999899999631109 Q gi|254780868|r 207 IGDLITIKLSYGS-ILGRFVGVDDFGYLLLEEKKGCVRQIFTGDIFT 252 (252) Q Consensus 207 ~gk~V~i~~~~~~-~~G~~~gId~~G~L~i~~~~G~~~~i~sGeI~~ 252 (252) .|..|.++-.++. +.++|++-+..=--.|+.+||....+--.|||| T Consensus 4 ~Ge~V~VrW~DG~~y~A~f~~~~~~~~YqVeFEDgSql~vKR~dIyt 50 (56) T d2qqra2 4 EGEVVQVRWTDGQVYGAKFVASHPIQMYQVEFEDGSQLVVKRDDVYT 50 (56) T ss_dssp TTCEEEEECTTSCEEEEEEEEEEEEEEEEEEETTSCEEEECGGGEEE T ss_pred CCCEEEEECCCCCEEEEEEEECCEEEEEEEEECCCCEEEEEHHHEEC T ss_conf 78589998378879888997010169999998479688774457021 No 22 >d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]} Probab=66.45 E-value=3.4 Score=17.94 Aligned_cols=45 Identities=20% Similarity=0.145 Sum_probs=34.7 Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC-----CCCEEEEEEEEEC Q ss_conf 23897799997993-89999998769874899969-----9989999963110 Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK-----KGCVRQIFTGDIF 251 (252) Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~-----~G~~~~i~sGeI~ 251 (252) ...|+.|.++..++ .+.|+..++|+.-.+.+++. +|+ ....++|| T Consensus 8 ~~~g~~V~VeLkng~~~~G~L~~~D~~MNl~L~~~~~~~~~~~--~~~~~~v~ 58 (80) T d1b34a_ 8 KLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNRE--PVQLETLS 58 (80) T ss_dssp TCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSC--CEEEEEEE T ss_pred HCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEECCCCC--EEECCCEE T ss_conf 7499889999989989999999983895899979999969997--87756299 No 23 >d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=65.06 E-value=3.6 Score=17.77 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=28.5 Q ss_pred HCCCCEEEEEEC-CE-EEEEEEEEECCCCCEEEECC Q ss_conf 238977999979-93-89999998769874899969 Q gi|254780868|r 205 CGIGDLITIKLS-YG-SILGRFVGVDDFGYLLLEEK 238 (252) Q Consensus 205 ~~~gk~V~i~~~-~~-~~~G~~~gId~~G~L~i~~~ 238 (252) ..+|+.|.++.. ++ .+.|+..+.|..-.+.+++. T Consensus 3 ~~~~~~V~V~Lk~~~~~~~G~L~~~D~~mNlvL~~~ 38 (68) T d1n9ra_ 3 GLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEA 38 (68) T ss_dssp GGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEE T ss_pred HHCCCEEEEEEECCCEEEEEEEEEECCCCCEEEEEE T ss_conf 477987999997499999999999977573699619 No 24 >d1m5q1_ b.38.1.1 (1:) Sm-Like archaeal protein Smap3 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Probab=51.75 E-value=6 Score=16.36 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=14.6 Q ss_pred CCCCEEEEEECCE-EEEEEEEEECCCCCEEEE Q ss_conf 3897799997993-899999987698748999 Q gi|254780868|r 206 GIGDLITIKLSYG-SILGRFVGVDDFGYLLLE 236 (252) Q Consensus 206 ~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~ 236 (252) .+|+.|.+...++ .+.|+..++|..-.+.++ T Consensus 8 ~~gk~V~VeLkng~~~~G~L~~~D~~mNivL~ 39 (127) T d1m5q1_ 8 LLGREVQVVLSNGEVYKGVLHAVDNQLNIVLA 39 (127) T ss_dssp TTTSEEEEEETTSCEEEEEEEEECTTCCEEEE T ss_pred HCCCEEEEEECCCCEEEEEEEEECCCCEEEEE T ss_conf 37988999989998999999998788558995 No 25 >d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]} Probab=47.46 E-value=4 Score=17.49 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=17.7 Q ss_pred CCCEEEECCCCCEEEEEEEEEC Q ss_conf 8748999699989999963110 Q gi|254780868|r 230 FGYLLLEEKKGCVRQIFTGDIF 251 (252) Q Consensus 230 ~G~L~i~~~~G~~~~i~sGeI~ 251 (252) +|++.|.+++|....+.+||.+ T Consensus 44 eG~v~i~~~~G~~~~~~aGD~~ 65 (88) T d1o5ua_ 44 EGKVEVTTEDGKKYVIEKGDLV 65 (88) T ss_dssp EEEEEEEETTCCEEEEETTCEE T ss_pred EEEEEEECCCCCEEEEECCCEE T ss_conf 7199999499978999089999 No 26 >d2d6fa1 b.38.3.1 (A:2-73) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=40.64 E-value=9 Score=15.29 Aligned_cols=51 Identities=12% Similarity=0.166 Sum_probs=37.7 Q ss_pred HHHHHHHHHHHCCCCEEEEEECCEEEEEEEEE---ECCCCCEEEECCCCCEEEE Q ss_conf 88999998752389779999799389999998---7698748999699989999 Q gi|254780868|r 195 EIMNLWRCFACGIGDLITIKLSYGSILGRFVG---VDDFGYLLLEEKKGCVRQI 245 (252) Q Consensus 195 ~i~~~~~~~~~~~gk~V~i~~~~~~~~G~~~g---Id~~G~L~i~~~~G~~~~i 245 (252) ..++...+.-.-.|-.|++..++.+++|++.- ..++..+.|+.++|----| T Consensus 5 k~~~fL~~~~i~vGD~V~i~~~~~~~eGilmP~~e~sd~~~iVlKL~nGYNiGi 58 (72) T d2d6fa1 5 RARKFLESASIDVGDMVLVEKPDVTYEGMVLDRADDADDRHIVLKLENGYNIGV 58 (72) T ss_dssp HHHHHHHTTTCCTTCEEEEECSSCEEEEEECCCCTTSCSSEEEEECTTSCEEEE T ss_pred HHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCEEEEEECCCEEEEE T ss_conf 899999985999998899997991899998487445899989999248644726 No 27 >d1b34b_ b.38.1.1 (B:) D2 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]} Probab=31.78 E-value=12 Score=14.41 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=27.2 Q ss_pred HCCCCEEEEEECC-EEEEEEEEEECCCCCEEEECC Q ss_conf 2389779999799-389999998769874899969 Q gi|254780868|r 205 CGIGDLITIKLSY-GSILGRFVGVDDFGYLLLEEK 238 (252) Q Consensus 205 ~~~gk~V~i~~~~-~~~~G~~~gId~~G~L~i~~~ 238 (252) ...++.|.+...+ ..+.|++.+-|....|++++. T Consensus 11 ~~~~~rV~V~lr~~r~~~G~L~afD~~~NlVL~d~ 45 (93) T d1b34b_ 11 VKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 45 (93) T ss_dssp HHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEE T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCEEEEEECE T ss_conf 85793899998899899999998612006884030 No 28 >d1ib8a1 b.38.2.1 (A:91-164) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]} Probab=21.74 E-value=19 Score=13.27 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=24.8 Q ss_pred HHHHHCCCCEEEEEEC-----CEEEEEEEEEECCCCCEEEE Q ss_conf 9875238977999979-----93899999987698748999 Q gi|254780868|r 201 RCFACGIGDLITIKLS-----YGSILGRFVGVDDFGYLLLE 236 (252) Q Consensus 201 ~~~~~~~gk~V~i~~~-----~~~~~G~~~gId~~G~L~i~ 236 (252) ..+..++|+.|.+... ...+.|+..+++++. +.|+ T Consensus 7 ~~f~r~~G~~v~v~l~~p~~g~k~f~G~L~~~~~~~-i~l~ 46 (74) T d1ib8a1 7 DAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDE-LTME 46 (74) T ss_dssp HHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETTE-EEEE T ss_pred HHHHHHCCCEEEEEEECCCCCCEEEEEEEEEECCCE-EEEE T ss_conf 999985799899999643399517999997462875-9999 Done!