RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780868|ref|YP_003065281.1| birA bifunctional protein
[Candidatus Liberibacter asiaticus str. psy62]
(252 letters)
>2cgh_A Biotin ligase; 1.8A {Mycobacterium tuberculosis} (A:1-221)
Length = 221
Score = 147 bits (371), Expect = 2e-36
Identities = 53/204 (25%), Positives = 85/204 (41%), Gaps = 12/204 (5%)
Query: 9 QNPYSFRYEFFDTISSTNDECMKRALSGDL-GNLWIVASCQTAGRGRRDNKWISDKGNLY 67
+ + STN + + RA SG + ++A QTAGRGR W +
Sbjct: 25 AGSGWRQLDVVAQTGSTNADLLARAASGADIDGVVLIAEHQTAGRGRHGRGWAATARAQI 84
Query: 68 ASLLLI--DSISKDSLTLLSFAIAVAMRSVIASTLPV-GTDVKIKWPNDILVFQRKIAGI 124
+ + + + LS A +A+ +A + V + +KWPND+L K+AGI
Sbjct: 85 ILSVGVRVVDVPVQAWGWLSLAAGLAVLDSVAPLIAVPPAETGLKWPNDVLARGGKLAGI 144
Query: 125 LIETLNLKNGLQAVVVGIGLNVKHCPVDTPYPVTSLQREGG-CIDLKDIFSLLFQDVARV 183
L E VV+G+GLNV P + TSL G D I S L +++
Sbjct: 145 LAEVAQ-----PFVVLGVGLNVTQAPEEVDPDATSLLDLGVAAPDRNRIASRLLRELEAR 199
Query: 184 LDLWKKDTGREEIMNLWRCFACGI 207
+ W+ ++ +R + I
Sbjct: 200 IIQWRN--ANPQLAADYRARSLTI 221
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A
{Escherichia coli} (A:65-271)
Length = 207
Score = 147 bits (371), Expect = 2e-36
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 8/192 (4%)
Query: 14 FRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNL-YASLLL 72
I STN + R G +A Q AGRGRR KW S G Y S+
Sbjct: 15 GSVAVLPVIDSTNQYLLDRIGELKSG-DACIAEYQQAGRGRRGRKWFSPFGANLYLSMFW 73
Query: 73 IDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLK 132
+ LS I + M V+ V++KWPND+ + RK+AGIL+E
Sbjct: 74 RLEQGPAAAIGLSLVIGIVMAEVLRKLGAD--KVRVKWPNDLYLQDRKLAGILVELTGKT 131
Query: 133 NGLQAVVVGIGLNV--KHCPVDTPYPVTSLQREGGC-IDLKDIFSLLFQDVARVLDLWKK 189
+V+G G+N+ + +E G +D + ++L +++ L+L+++
Sbjct: 132 GDAAQIVIGAGINMAMRRVEESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQ 191
Query: 190 DTGREEIMNLWR 201
+ G ++ W
Sbjct: 192 E-GLAPYLSRWE 202
>3bfm_A Biotin protein ligase-like protein of unknown function;
YP_612389.1, structural genomics, joint center for
structural genomics, JCSG; HET: 2PE; 1.70A {Silicibacter
SP} (A:1-191)
Length = 191
Score = 143 bits (363), Expect = 1e-35
Identities = 28/197 (14%), Positives = 53/197 (26%), Gaps = 20/197 (10%)
Query: 9 QNPYSFRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYA 68
P E D ++ G + L A
Sbjct: 7 TFPPLXTGEAAGPGQDPFDLACQK---------------AELGVDAGLVVYELGTDVLRA 51
Query: 69 SLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIET 128
+L+L + V ++ + + P V + W + + + + I
Sbjct: 52 ALVLAPEVPLAKAXAXLPVCGVGFQNALGALAPPEVAVHLDWNGALRINGARCGRLRIAA 111
Query: 129 LNLKNGLQ--AVVVGIGLNVKHCPVDTPYP-VTSLQREGG-CIDLKDIFSLLFQDVARVL 184
Q +VVG+ L + P T+L EG + + + +
Sbjct: 112 STDDPDTQPDWLVVGLDLPLWPEGDGGETPDETALYAEGCADVAAPRLLESWARHCLHWI 171
Query: 185 DLWKKDTGREEIMNLWR 201
+ W + E I WR
Sbjct: 172 NRWDEG-ELETIHGEWR 187
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis,
dimer, X-RAY diffraction, structural genomics, NPPSFA;
1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
(A:1-185)
Length = 185
Score = 137 bits (346), Expect = 2e-33
Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 15/190 (7%)
Query: 15 RYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLID 74
+ + ST + + +S +VA QT GRGR KW+S +G LY S LL
Sbjct: 4 NLIWLKEVDSTQERLKEWNVSY---GTALVADRQTKGRGRLGRKWLSQEGGLYFSFLLNP 60
Query: 75 SISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNG 134
++ L L + +++ + + +KWPND+ ++K++G+L E
Sbjct: 61 KEFEN-LLQLPLVLGLSVSEALEEITEI--PFSLKWPNDVYFQEKKVSGVLCELSK---- 113
Query: 135 LQAVVVGIGLNVK--HCPVDTPYPVTSLQREGG-CIDLKDIFSLLFQDVARVLDLWKKDT 191
++VGIG+NV P + T+L G D K++ + + ++ L +K+
Sbjct: 114 -DKLIVGIGINVNQREIPEEIKDRATTLYEITGKDWDRKEVLLKVLKRISENLKKFKEK- 171
Query: 192 GREEIMNLWR 201
+E
Sbjct: 172 SFKEFKGKIE 181
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY
diffraction, structural genomics, NPPSFA; HET: BTN;
2.00A {Methanocaldococcus jannaschii} (A:1-191)
Length = 191
Score = 124 bits (312), Expect = 1e-29
Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 17/201 (8%)
Query: 14 FRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLI 73
I STND + A G ++A Q G+GR W SD+G LY S ++
Sbjct: 1 MEIIHLSEIDSTNDYAKELAKEGKRNF-IVLADKQNNGKGRWGRVWYSDEGGLYFS--MV 57
Query: 74 DSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQ----RKIAGILIETL 129
+ +++ + + + V+ + + ++ +K+PNDI+V +K+ GIL E
Sbjct: 58 LDSKLYNPKVINLLVPICIIEVLKNYVDK--ELGLKFPNDIMVKVNDNYKKLGGILTEL- 114
Query: 130 NLKNGLQAVVVGIGLNVKHC-PVDTPYPVTSLQREGG-CIDLKDIFSLLFQDVARVLDLW 187
+++GIG+NV + + SL+ G +D +I S + L+
Sbjct: 115 ----TDDYMIIGIGINVNNQIRNEIREIAISLKEITGKELDKVEILSNFLKTFESYLEKL 170
Query: 188 KKDTGR-EEIMNLWRCFACGI 207
K EI+ ++ ++ I
Sbjct: 171 KNKEIDDYEILKKYKKYSITI 191
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin
biosynthesis, dimer, X-RAY diffraction, structural
genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus
horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A
2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A*
2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A
2e10_A ... (A:1-187)
Length = 187
Score = 118 bits (296), Expect = 8e-28
Identities = 61/189 (32%), Positives = 92/189 (48%), Gaps = 17/189 (8%)
Query: 14 FRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLI 73
R +F I+STN+ L IVA QT G G + KW S +G L+ S++L
Sbjct: 11 RRVIYFQEITSTNEFAKTSYLEEGT---VIVADKQTMGHGALNRKWESPEGGLWLSIVLS 67
Query: 74 DSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKN 133
+ + L + F AV + + D +IKWPND+LV +KIAG+L+E
Sbjct: 68 PKVPQKDLPKIVFLGAVGVVETLKE---FSIDGRIKWPNDVLVNYKKIAGVLVEGKG--- 121
Query: 134 GLQAVVVGIGLNVKHCPVDTPYPVTSLQREGG-CIDLKDIFSLLFQDVARVLDLWKKDTG 192
+V+GIGLNV P TS++ E G + L +F L ++ R+ + K+
Sbjct: 122 --DKIVLGIGLNV---NNKVPNGATSMKLELGSEVPLLSVFRSLITNLDRLYLNFLKNPM 176
Query: 193 REEIMNLWR 201
+I+NL R
Sbjct: 177 --DILNLVR 183
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A
{Thermus thermophilus HB8} PDB: 2qht_A 2qhu_A 2qhv_A
(A:)
Length = 237
Score = 82.9 bits (204), Expect = 4e-17
Identities = 24/161 (14%), Positives = 47/161 (29%), Gaps = 10/161 (6%)
Query: 40 NLWIVASCQTAGRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIAST 99
+ + + R + G L + + I A+ V A
Sbjct: 81 SWYRENGFELYWVERGGDVTYHGPGQLVGYPIFPV---GREVRRFLRQIEEAIVRVAAGY 137
Query: 100 LPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQ-AVVVGIGLNVKHCPVDTPY--- 155
+ + V + K+ I + + A+ V LN V
Sbjct: 138 --GISAYPTPGYAGVWVGEDKLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCGLKGK 195
Query: 156 PVTSLQREGGC-IDLKDIFSLLFQDVARVLDLWKKDTGREE 195
VTSL++ G + +++ + + A V L + E
Sbjct: 196 GVTSLEKLLGRKVPMEEAKARVVAAFAEVFGLRPVEGSVHE 236
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid,
acyltransferase, mycobacterium tuberculosis structural
proteomics project; HET: DKA; 1.08A {Mycobacterium
tuberculosis} (A:)
Length = 232
Score = 61.3 bits (148), Expect = 1e-10
Identities = 16/148 (10%), Positives = 39/148 (26%), Gaps = 11/148 (7%)
Query: 48 QTAGRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVK 107
R G L ++ + D + + ++ L +
Sbjct: 72 PVVDTDRGGKITWHGPGQLVGYPIIGLAEPLDVVNYVRRLEESLIQVCADLGLH---AGR 128
Query: 108 IKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPVDTPYP-------VTSL 160
+ + + + R + + + + + P VTSL
Sbjct: 129 VDGRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSL 188
Query: 161 QREGG-CIDLKDIFSLLFQDVARVLDLW 187
E G + + ++ + + V LD
Sbjct: 189 SAELGRTVTVDEVRATVAAAVCAALDGV 216
>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4}
(A:1-49,A:92-251)
Length = 209
Score = 38.8 bits (90), Expect = 7e-04
Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 27/154 (17%)
Query: 59 WISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQ 118
WI+ NL +++ + +K F VI + +G + ND+ +
Sbjct: 47 WIN--NNLNYTIISKEDENKA------FDFKSFSTPVINTLAQLGVKAEFTGRNDLEIDG 98
Query: 119 RKIAGILIE----------TLNLKNGLQAVVVGIGLNVKHCPVDT------PYPVTSLQR 162
+K G L L + L V ++ VT++
Sbjct: 99 KKFCGNAQAYINGRIXHHGCLLFDVDLSV--LANALKVSKDKFESKGVKSVRARVTNIIN 156
Query: 163 E-GGCIDLKDIFSLLFQDVARVLDLWKKDTGREE 195
E I ++ LL + + + EE
Sbjct: 157 ELPKKITVEKFRDLLLEYXKKEYPEXTEYVFSEE 190
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin
biosynthesis, dimer, X-RAY diffraction, structural
genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus
horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A
2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A*
2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A
2e10_A ... (A:188-235)
Length = 48
Score = 32.9 bits (76), Expect = 0.038
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 218 GSILGRFVGVDDFGYLLLEEKKGCVRQIFTGDI 250
GS G +DDFG L++ G V+++ GD+
Sbjct: 11 GSFEGIAEDIDDFGRLIIRLDSGEVKKVIYGDV 43
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A
{Escherichia coli} (A:272-321)
Length = 50
Score = 27.9 bits (63), Expect = 1.2
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 207 IGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKGCVRQIFTGDI 250
I + + + I G G+D G LLLE+ ++ G+I
Sbjct: 1 INRPVKLIIGDKEIFGISRGIDKQGALLLEQDGI-IKPWMGGEI 43
>3kd4_A Putative protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; HET: MSE; 2.00A {Parabacteroides distasonis atcc
8503} (A:367-506)
Length = 140
Score = 27.1 bits (60), Expect = 2.3
Identities = 4/59 (6%), Positives = 15/59 (25%), Gaps = 4/59 (6%)
Query: 100 LPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPVDTPYPVT 158
+ + + Q K + + G+ + + + + P +
Sbjct: 4 IQIKESRSVAISA----DQAKDGFAICVLPAISAGIDSWGXSALNSKRSNLFELPSLIR 58
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus,
RNA- binding, transport, tRNA processing, tRNA-binding,
RNA binding protein; 3.10A {Schizosaccharomyces pombe}
PDB: 3icq_T* (A:831-925)
Length = 95
Score = 26.2 bits (58), Expect = 4.0
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 194 EEIMNLWRCFACGIGDLITIKLSYGSILGRFVGV 227
+ ++N FA +G+ T K S +++ + V +
Sbjct: 9 DPLINSILHFANLVGEPATQKSSI-ALVSKMVSL 41
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP,
splicing, spliceosome, core snRNP domain, systemic lupus
erythematosus, SLE; 2.50A {Homo sapiens} (B:)
Length = 118
Score = 25.3 bits (55), Expect = 7.7
Identities = 7/46 (15%), Positives = 11/46 (23%), Gaps = 4/46 (8%)
Query: 207 IGDLITIKLSYGS-ILGRFVGVDDFGYLLLEEKKGCVRQIFTGDIF 251
+ I +LGR D ++LE
Sbjct: 38 NNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN---VKEMWTEVPKS 80
>1yoz_A Hypothetical protein AF0941; APC5573, midwest center for
structural genomics, MCSG, protein structure initiative,
PSI, structural genomics; 2.00A {Archaeoglobus fulgidus}
(A:)
Length = 116
Score = 25.0 bits (54), Expect = 9.2
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 159 SLQREGGCIDLKDIFSLLFQDVARVLDLWKK-DTGREEIMN 198
S++ +D K+IF + D +L+L+K +EE+
Sbjct: 22 SVEEADKLLDQKNIFEMFRSDCEEILNLYKSGKAEKEEVQR 62
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.324 0.141 0.433
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,917,068
Number of extensions: 82373
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 22
Length of query: 252
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 166
Effective length of database: 2,048,819
Effective search space: 340103954
Effective search space used: 340103954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.4 bits)