RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780868|ref|YP_003065281.1| birA bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] (252 letters) >d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 188 Score = 93.7 bits (232), Expect = 1e-20 Identities = 60/188 (31%), Positives = 92/188 (48%), Gaps = 17/188 (9%) Query: 15 RYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLID 74 R +F I+STN+ L IVA QT G G + KW S +G L+ S++L Sbjct: 12 RVIYFQEITSTNEFAKTSYLEE---GTVIVADKQTMGHGALNRKWESPEGGLWLSIVLSP 68 Query: 75 SISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNG 134 + + L + F AV + + D +IKWPND+LV + IAG+L+E Sbjct: 69 KVPQKDLPKIVFLGAVGVVETLKEFSI---DGRIKWPNDVLVNYKAIAGVLVEGKG---- 121 Query: 135 LQAVVVGIGLNVKHCPVDTPYPVTSLQREGGC-IDLKDIFSLLFQDVARVLDLWKKDTGR 193 +V+GIGLNV + P TS++ E G + L +F L ++ R+ + K+ Sbjct: 122 -DKIVLGIGLNVNN---KVPNGATSMKLELGSEVPLLSVFRSLITNLDRLYLNFLKNP-- 175 Query: 194 EEIMNLWR 201 +I+NL R Sbjct: 176 MDILNLVR 183 >d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]} Length = 207 Score = 80.4 bits (197), Expect = 1e-16 Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 8/192 (4%) Query: 14 FRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWIS-DKGNLYASLLL 72 I STN + R G +A Q AGRGRR KW S NLY S+ Sbjct: 16 GSVAVLPVIDSTNQYLLDRIGELKSG-DACIAEYQQAGRGRRGRKWFSPFGANLYLSMFW 74 Query: 73 IDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLK 132 + LS I + M V+ V++KWPND+ + RK+AGIL+E Sbjct: 75 RLEQGPAAAIGLSLVIGIVMAEVLRKLGA--DKVRVKWPNDLYLQDRKLAGILVELTGKT 132 Query: 133 NGLQAVVVGIGLNVKHCPVDTP---YPVTSLQREGGCIDLKDIFSLLFQDVARVLDLWKK 189 +V+G G+N+ V+ +LQ G +D + ++L +++ L+L+++ Sbjct: 133 GDAAQIVIGAGINMAMRRVEESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQ 192 Query: 190 DTGREEIMNLWR 201 + G ++ W Sbjct: 193 E-GLAPYLSRWE 203 >d1biaa2 b.34.1.1 (A:271-317) Biotin repressor/biotin holoenzyme synthetase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 47 Score = 30.7 bits (70), Expect = 0.13 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 207 IGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKGCVRQIFTGDI 250 I + + + I G G+D G LLLE+ ++ G+I Sbjct: 2 INRPVKLIIGDKEIFGISRGIDKQGALLLEQDGI-IKPWMGGEI 44 >d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]} Length = 379 Score = 29.2 bits (64), Expect = 0.37 Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 3/67 (4%) Query: 18 FFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLIDSIS 77 + + N++ + +S NL+ + G Y+ L ++ Sbjct: 293 AHSSAQNKNNDYTRSDISLYAHNLYSGEVKLIDDFYPKVGN---ASGAGYSCLSYRKNVD 349 Query: 78 KDSLTLL 84 K++L ++ Sbjct: 350 KETLYVV 356 >d1iyjb4 b.40.4.3 (B:2732-2760,B:2898-2979) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 111 Score = 27.1 bits (60), Expect = 1.5 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 7/53 (13%) Query: 154 PYPVTSLQREGG---CIDL--KDIFSLLFQDVARVLDLWKKDTGREEIMNLWR 201 P P++SL +GG C+D+ + ++ L + RV K++ + ++++WR Sbjct: 1 PLPLSSLFSDGGNVGCVDVIVQRVYPLQWVWKLRVTSYKKRE--KSALLSIWR 51 >d2zgwa1 b.34.1.1 (A:189-235) Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 47 Score = 26.3 bits (58), Expect = 2.6 Identities = 13/36 (36%), Positives = 20/36 (55%) Query: 215 LSYGSILGRFVGVDDFGYLLLEEKKGCVRQIFTGDI 250 L GS G +DDFG L++ G V+++ GD+ Sbjct: 7 LGDGSFEGIAEDIDDFGRLIIRLDSGEVKKVIYGDV 42 >d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Length = 186 Score = 25.2 bits (54), Expect = 5.6 Identities = 7/26 (26%), Positives = 12/26 (46%) Query: 138 VVVGIGLNVKHCPVDTPYPVTSLQRE 163 V + I N+ P P P ++L + Sbjct: 161 VYLEIACNIASMPCAAPGPASALFND 186 >d1yoza1 a.253.1.1 (A:11-124) Hypothetical protein AF0941 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 114 Score = 24.6 bits (53), Expect = 9.1 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Query: 159 SLQREGGCIDLKDIFSLLFQDVARVLDLWKKDTGREEIMNLWRCF 203 S++ +D K+IF + D +L+L+K +G+ E + R F Sbjct: 20 SVEEADKLLDQKNIFEMFRSDCEEILNLYK--SGKAEKEEVQRNF 62 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.324 0.141 0.433 Gapped Lambda K H 0.267 0.0439 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 953,421 Number of extensions: 43276 Number of successful extensions: 77 Number of sequences better than 10.0: 1 Number of HSP's gapped: 74 Number of HSP's successfully gapped: 14 Length of query: 252 Length of database: 2,407,596 Length adjustment: 83 Effective length of query: 169 Effective length of database: 1,268,006 Effective search space: 214293014 Effective search space used: 214293014 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 52 (24.5 bits)