BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780868|ref|YP_003065281.1| birA bifunctional protein
[Candidatus Liberibacter asiaticus str. psy62]
         (252 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780868|ref|YP_003065281.1| birA bifunctional protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 252

 Score =  512 bits (1319), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/252 (100%), Positives = 252/252 (100%)

Query: 1   MFSNLSECQNPYSFRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWI 60
           MFSNLSECQNPYSFRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWI
Sbjct: 1   MFSNLSECQNPYSFRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWI 60

Query: 61  SDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRK 120
           SDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRK
Sbjct: 61  SDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRK 120

Query: 121 IAGILIETLNLKNGLQAVVVGIGLNVKHCPVDTPYPVTSLQREGGCIDLKDIFSLLFQDV 180
           IAGILIETLNLKNGLQAVVVGIGLNVKHCPVDTPYPVTSLQREGGCIDLKDIFSLLFQDV
Sbjct: 121 IAGILIETLNLKNGLQAVVVGIGLNVKHCPVDTPYPVTSLQREGGCIDLKDIFSLLFQDV 180

Query: 181 ARVLDLWKKDTGREEIMNLWRCFACGIGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKG 240
           ARVLDLWKKDTGREEIMNLWRCFACGIGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKG
Sbjct: 181 ARVLDLWKKDTGREEIMNLWRCFACGIGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKG 240

Query: 241 CVRQIFTGDIFT 252
           CVRQIFTGDIFT
Sbjct: 241 CVRQIFTGDIFT 252


>gi|254781033|ref|YP_003065446.1| HemY domain-containing protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 492

 Score = 24.6 bits (52), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 48  QTAGRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSV-IASTLPVGTDV 106
           Q+A     D  WISD G L +  L +  ISK   TL  F   +  +S    S+  +   +
Sbjct: 383 QSALHAMPDPLWISDDGYLSSVWLPLSPISK---TLCYFEWKIPTKSPEYISSENINFSL 439

Query: 107 KIKWPND 113
           ++ +P D
Sbjct: 440 EMAYPAD 446


>gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 367

 Score = 23.5 bits (49), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 9/13 (69%), Positives = 12/13 (92%)

Query: 125 LIETLNLKNGLQA 137
           L+E+LNLKNG+ A
Sbjct: 89  LMESLNLKNGISA 101


>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 963

 Score = 22.3 bits (46), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 94  SVIASTLPVGTDVKIKWPNDILV 116
           S    T+ +G D K+ WP D+ +
Sbjct: 569 SACTHTILLGKDPKLAWPADVYL 591


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.141    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,621
Number of Sequences: 1233
Number of extensions: 6568
Number of successful extensions: 19
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 6
length of query: 252
length of database: 328,796
effective HSP length: 72
effective length of query: 180
effective length of database: 240,020
effective search space: 43203600
effective search space used: 43203600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 37 (18.9 bits)