HHsearch alignment for GI: 254780869 and conserved domain: COG0426
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion].
Probab=99.11 E-value=1.6e-09 Score=87.54 Aligned_cols=305 Identities=20% Similarity=0.227 Sum_probs=162.7
Q ss_pred CCCEEEEEEECCCCCCEEEEEECCC-CCCCCCCCCEEEECCCHHHHHHH--HHCCCEEEEECCCCCCCCCHHHHHHHC-C
Q ss_conf 4660699995177786489997767-67888767502870795798766--412468996054301216078889862-9
Q gi|254780869|r 17 IGMNMALYGYGSPSSRKWIMIDCGV-SFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHEDHYGALHDLWSFL-H 92 (559)
Q Consensus 17 iG~N~~~~~~~~~~~~~~iiiD~G~-~fp~~~~~gid~iiPd~~~l~~~--~~~i~~i~iTH~H~DHiGalp~l~~~~-~ 92 (559)
T Consensus 34 ttyNSYLI~-----~~k~aLID~~~~~f~~-------~~---l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p~ 98 (388)
T COG0426 34 TTYNSYLIV-----GDKTALIDTVGEKFFD-------EY---LENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAPN 98 (388)
T ss_pred CEEEEEEEE-----CCCEEEECCCCCCHHH-------HH---HHHHHHHCCHHCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 144558996-----7967998899801699-------99---99998634800171999788896335469999986889
Q ss_pred CCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECC--CCCCCCCEEEEEECCCEEEECCCC----
Q ss_conf 97792999999999999854886556225517555577634899998556--777765356798768179983340----
Q gi|254780869|r 93 VPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVN--HSIPETMALVIRSPVGNIVHTGDW---- 166 (559)
Q Consensus 93 ~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~--Hsip~a~~~~I~t~~g~i~ytGDf---- 166 (559)
T Consensus 99 a~ii~s~~~~~~L~~~~~~----~~~-~~ivk~Gd~ldlGg~tL~Fi~ap~LHW-Pd~m~TY--d~~~kILFS~D~fG~h 170 (388)
T COG0426 99 AKIICSKLAARFLKGFYHD----PEW-FKIVKTGDTLDLGGHTLKFIPAPFLHW-PDTMFTY--DPEDKILFSCDAFGAH 170 (388)
T ss_pred CEEEEEHHHHHHHHHHCCC----CCC-EEECCCCCEECCCCCEEEEEECCCCCC-CCCEEEE--ECCCCEEECCCCCCCC
T ss_conf 7899638999999974488----541-363478877644894799995787779-8733676--2477577714656642
Q ss_pred -----EECCCCCCCCCCCHHHHHHCCCCCCEEEEE---------------CCC--CCCCCCCCCC--HHHHHHHHHHHHH
Q ss_conf -----246776654238988998608788299996---------------356--4578887777--8799999999986
Q gi|254780869|r 167 -----KLDDDAILGDVTDKDSLCAIGNEGILALMC---------------DST--NAMREGTCIS--EKGIKKNIYDIMK 222 (559)
Q Consensus 167 -----k~d~~p~~g~~~d~~~l~~~~~~gv~~Li~---------------esT--~~~~~~~~~s--E~~v~~~i~~~~~ 222 (559)
T Consensus 171 ~~~~~~fded--------~~~~~~~~~~Y~~~lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~~~~~~~i~~~Y~~W~~ 242 (388)
T COG0426 171 VCDDYRFDED--------IEELLPDMRKYYANLMAPNARLVLWALKKIKLLKIEMIAPSHGPIWRGNPKEIVEAYRDWAE 242 (388)
T ss_pred CCCHHCCCCC--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEECCCCCEEECCHHHHHHHHHHHHC
T ss_conf 4652112467--------99987989999999605217999999854054674189759985255798999999999970
Q ss_pred HC-CCCEEE---EECHHHHHH-HHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCHHH-HCCCCCCCEEE
Q ss_conf 27-983999---941477899-9999999987188699844869999998874287677654226566-22388020899
Q gi|254780869|r 223 NA-KGCVLV---TTFSSSVSR-IRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDES-FGLYPREQLIV 296 (559)
Q Consensus 223 ~~-~grViv---~~fasni~R-i~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~~~~~~i~~~~-~~~~p~~~~~i 296 (559)
T Consensus 243 ~~~~~~V~l~Y~smyg-~T~~ma~aiaegl~~~gv~v~~~~---------------~~~~----~~~eI~~~i~~a~~~v 302 (388)
T COG0426 243 GQPKGKVDLIYDSMYG-NTEKMAQAIAEGLMKEGVDVEVIN---------------LEDA----DPSEIVEEILDAKGLV 302 (388)
T ss_pred CCCCCEEEEEEECCCC-CHHHHHHHHHHHHHHCCCCEEEEE---------------CCCC----CHHHHHHHHHHCCEEE
T ss_conf 6876617999842237-879999999877611599629999---------------1558----8999999987537799
Q ss_pred EEECCC-CCH----HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCC
Q ss_conf 996696-326----889885202777653026896699996158861778999997651031134303566641315788
Q gi|254780869|r 297 IATGSQ-GEP----RSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHP 371 (559)
Q Consensus 297 i~TGsq-ge~----~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa 371 (559)
T Consensus 303 vGsPT~~~~~~p~i~~~l~~v~~-----~~~~~k~~~vfgS~GW~--g~av~~i~~~l~~~g~~~~~~----~i~vk~~P 371 (388)
T COG0426 303 VGSPTINGGAHPPIQTALGYVLA-----LAPKNKLAGVFGSYGWS--GEAVDLIEEKLKDLGFEFGFD----GIEVKFRP 371 (388)
T ss_pred EECCCCCCCCCCHHHHHHHHHHH-----CCCCCCEEEEEECCCCC--CCCHHHHHHHHHHCCCEEECC----CEEEEECC
T ss_conf 95686468879219999999974-----35878559999647878--750789999998659678524----16998437
Q ss_pred CHHHHHHHHHHC
Q ss_conf 978999999754
Q gi|254780869|r 372 YPNDLKRMYQWI 383 (559)
Q Consensus 372 ~~edl~~li~~i 383 (559)
T Consensus 372 ~~~~l~~c~e~g 383 (388)
T COG0426 372 TEEDLKKCEEAG 383 (388)
T ss_pred CHHHHHHHHHHH
T ss_conf 889999999999