HHsearch alignment for GI: 254780869 and conserved domain: COG0595
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].
Probab=100.00 E-value=0 Score=1087.99 Aligned_cols=545 Identities=41% Similarity=0.637 Sum_probs=520.5
Q ss_pred CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 88639999406868346606999951777864899977676788876750287079579876641246899605430121
Q gi|254780869|r 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHY 81 (559)
Q Consensus 2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHi 81 (559)
T Consensus 5 ~~~~i~i~~lGG~~EiGkN~~vve~----~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHI 80 (555)
T COG0595 5 KKAKIKIFALGGVGEIGKNMYVVEY----GDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHI 80 (555)
T ss_pred CCCCEEEEEECCHHHHCCCEEEEEE----CCCEEEEECCCCCCCCCCCCCCEEECCHHHHHHCCCCCEEEEECCCCHHHC
T ss_conf 8785589980581022262389997----896899977656686435555588258277431500213999468744432
Q ss_pred CCHHHHHHHCC-CCEECCHHHHHHHHHHHHHCCCCC-CCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCE
Q ss_conf 60788898629-977929999999999998548865-5622551755557763489999855677776535679876817
Q gi|254780869|r 82 GALHDLWSFLH-VPVYASPFAIGLLEAKRVYERVSK-KIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGN 159 (559)
Q Consensus 82 Galp~l~~~~~-~pIY~s~~t~~li~~~~~~~~~~~-~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~ 159 (559)
T Consensus 81 Gaip~ll~~~~~~piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~Tp~G~ 160 (555)
T COG0595 81 GALPYLLKQVLFAPIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKTPEGN 160 (555)
T ss_pred CCHHHHHHCCCCCCEECCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEEECCCCCCCEEEEEECCCCC
T ss_conf 34678985277684444776699999898873211356743994799857767679999960355745168999879843
Q ss_pred EEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHH
Q ss_conf 99833402467766542389889986087882999963564578887777879999999998627983999941477899
Q gi|254780869|r 160 IVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSR 239 (559)
Q Consensus 160 i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~R 239 (559)
T Consensus 161 Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~pg~t~SE~~v~~~l~~i~~~a~grVIv~tfaSni~R 240 (555)
T COG0595 161 IVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAENPGFTPSESEVGENLEDIIRNAKGRVIVTTFASNIER 240 (555)
T ss_pred EEEECCEEECCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHH
T ss_conf 89968778558867777678899997466784799957865689998978899999999999738985999973446899
Q ss_pred HHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCCCC-CCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCC
Q ss_conf 99999999871886998448699999988742876776-54226566223880208999966963268898852027776
Q gi|254780869|r 240 IRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKD-QLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMR 318 (559)
Q Consensus 240 i~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~~~-~~~i~~~~~~~~p~~~~~ii~TGsqge~~a~l~ria~~~~~ 318 (559)
T Consensus 241 i~~i~~~A~~~gR~vvv~GrSm~~~~~~a~~lg~~~~~~~~~i~~~~~~~~~~~~~lii~TG~qgep~aaL~r~a~~~h~ 320 (555)
T COG0595 241 IQTIIDAAEKLGRKVVVTGRSMERLIAIARRLGYLKLPDESFIEIREVKRYPDEEVLIICTGSQGEPMAALSRMANGEHR 320 (555)
T ss_pred HHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 99999999980991999867599999987643642277102227778432564546999928998706666676458753
Q ss_pred CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHH
Q ss_conf 53026896699996158861778999997651031134303566641315788978999999754953999704577999
Q gi|254780869|r 319 NVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHL 398 (559)
Q Consensus 319 ~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~rhl 398 (559)
T Consensus 321 ~~~i~~gD~vIfss~~ipgne~~~~~~~n~l~~~g~~i~~~~~-~~~hvSGHas~eel~~mi~~l~Pky~iPvHGeyr~~ 399 (555)
T COG0595 321 YVKIKEGDTVIFSSSPIPGNEAAVYRLLNRLYKAGAKVITGGD-KKVHVSGHASREELKLMINLLRPKYLIPVHGEYRML 399 (555)
T ss_pred CEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCC-CEEEECCCCCHHHHHHHHHHHCCCEECCCCCCCHHH
T ss_conf 1203689859996178698489999998799865968850566-426966889869999999966876355268861889
Q ss_pred HHHHHHHHHCCCC--CEEEECCCEEEEECCCCEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEEECCC
Q ss_conf 9999878744786--31550032278973897045012321320212331002550588999974038749999998389
Q gi|254780869|r 399 VAHKELALQEGIA--CVPPVRNGKMLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLLDNH 476 (559)
Q Consensus 399 ~~h~~la~~~gv~--~i~l~~NGd~i~l~~~~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~viid~~ 476 (559)
T Consensus 400 ~~~a~la~~~G~~~~~i~i~~nG~v~~l~~~~~~~~~~v~~g~~~iDg~~~gdvg~~vl~dR~~lse~G~v~v~v~~d~~ 479 (555)
T COG0595 400 VAHAKLAEEEGIPQENIFILRNGDVLELEGGKARVIGKVPAGDVYIDGNGIGDVGAIVLRDRRQLSEDGIVIVVVVIDKK 479 (555)
T ss_pred HHHHHHHHHCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf 99998888628876537993493499844886531474454875875877786325777889861758779999998587
Q ss_pred -CCEEECCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf -98800537999401212566588999999999999985220036898999999999999999998288867899999
Q gi|254780869|r 477 -YNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISSALRSLLKKVWGKKPLVTVFIN 553 (559)
Q Consensus 477 -~~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~ir~~irk~~~k~~~KkP~V~v~I~ 553 (559)
T Consensus 480 ~~~~~~~p~~~~rG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lk~~ir~~l~~~~~~~~~r~P~i~~~i~ 555 (555)
T COG0595 480 KKKILAGPEISSRGFVY-VKESEKLIEEALELVENALESFLQEK-FDWKELKESIRRALRKFLYKKTKRRPLILPTVM 555 (555)
T ss_pred CCEECCCCCEEECCCCE-ECCCHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 77232689677534300-25506789999999999999865125-788999999999999999887468864986549