HHsearch alignment for GI: 254780869 and conserved domain: PRK00055
>PRK00055 ribonuclease Z; Reviewed.
Probab=99.84 E-value=4.1e-19 Score=156.52 Aligned_cols=214 Identities=21% Similarity=0.252 Sum_probs=134.5
Q ss_pred EEEEEECCCCC-CCCC--EEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH--HHCCCEEEEECCCCC
Q ss_conf 39999406868-3466--069999517778648999776767888767502870795798766--412468996054301
Q gi|254780869|r 5 ELVFLPLGGVG-EIGM--NMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHED 79 (559)
Q Consensus 5 ~i~~~~lGG~~-eiG~--N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~--~~~i~~i~iTH~H~D 79 (559)
T Consensus 3 kit~LGtg~~~p~~~R~~s~~li~~----~~~~iliD~G~G~~~-------------~l~~~~~~~~~l~~I~iTH~H~D 65 (259)
T PRK00055 3 ELTFLGTGSGVPTPTRNVSSILLRL----GGELWLFDCGEGTQR-------------QMLRAGIGPRKIDRIFITHLHGD 65 (259)
T ss_pred EEEEEECCCCCCCCCCCCCEEEEEE----CCEEEEEECCCHHHH-------------HHHHCCCCHHHCCEEEEECCCHH
T ss_conf 8999906899889999648899999----990899958815999-------------99981999557658999643357
Q ss_pred CCCCHHHHHHHC-------CCCEECCHHHHHHHHHHHHHCCCCCCCC--EEE---ECCCCEEEECCEEEEEEECCCCCCC
Q ss_conf 216078889862-------9977929999999999998548865562--255---1755557763489999855677776
Q gi|254780869|r 80 HYGALHDLWSFL-------HVPVYASPFAIGLLEAKRVYERVSKKIP--CIS---FQAGDKVDVGAFSIESVRVNHSIPE 147 (559)
Q Consensus 80 HiGalp~l~~~~-------~~pIY~s~~t~~li~~~~~~~~~~~~~~--~~~---i~~~~~~~~g~~~v~~~~~~Hsip~ 147 (559)
T Consensus 66 H~~Gl~~ll~~~~~~~~~~~l~i~gp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~H~~~- 144 (259)
T PRK00055 66 HIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVETLLRASGSHLPYRIAIHEIDEKTEGVVFDDDGFTVTAFPLDHSIP- 144 (259)
T ss_pred HHCHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEECCCEEEEEEECCCCCC-
T ss_conf 6652899999987459997169991778999999998850668897256763257987328964998999998679986-
Q ss_pred CCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCC---CHHHHHHHHHHHHHHC
Q ss_conf 5356798768179983340246776654238988998608788299996356457888777---7879999999998627
Q gi|254780869|r 148 TMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCI---SEKGIKKNIYDIMKNA 224 (559)
Q Consensus 148 a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~---sE~~v~~~i~~~~~~~ 224 (559)
T Consensus 145 s~Gyri~~~g~~i~ysgDt~~---------~--~~l~~~~-~gaDlLI~ea~~~~~~~~~~~~~~Hst~~~a~-~~a~~~ 211 (259)
T PRK00055 145 CLGYRFEEKGRKIAYVGDTRP---------C--EALVELA-KGADLLVHEATFGDEDEAKAKEHYHSTAKQAA-EIAKEA 211 (259)
T ss_pred EEEEEEEECCCEEEEECCCCC---------C--HHHHHHH-CCCCEEEEECCCCCCCHHHCCCCCCCCHHHHH-HHHHHC
T ss_conf 279999968816999527886---------8--8899886-06999999465577422441377668999999-999984
Q ss_pred C-CCEEEEECHHHH--HHHHHHHHHHHH
Q ss_conf 9-839999414778--999999999987
Q gi|254780869|r 225 K-GCVLVTTFSSSV--SRIRSIIDIAEQ 249 (559)
Q Consensus 225 ~-grViv~~fasni--~Ri~~i~~~a~~ 249 (559)
T Consensus 212 ~~k~lvLtH~~p~~~~~~~~~~~~e~~~ 239 (259)
T PRK00055 212 GVKRLILTHFSPRYTDPEELQLLKEARE 239 (259)
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 9999999920778898249999999998