HHsearch alignment for GI: 254780869 and conserved domain: PRK02126
>PRK02126 ribonuclease Z; Provisional.
Probab=99.70 E-value=1.5e-15 Score=130.83 Aligned_cols=122 Identities=18% Similarity=0.287 Sum_probs=81.6
Q ss_pred CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC-----C
Q ss_conf 66069999517778648999776767888767502870795798766412468996054301216078889862-----9
Q gi|254780869|r 18 GMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFL-----H 92 (559)
Q Consensus 18 G~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~-----~ 92 (559)
T Consensus 15 ~Dp~l~v~~~--~~~~~lLfDcGe~----~~------l~~-----~~l~~Id~IFITHlHgDH~~GL~gLLr~~~gr~~~ 77 (334)
T PRK02126 15 DDPGLYVDFL--FERRALLFDLGDL----HH------LPP-----RELLRISHIFVSHTHMDHFIGFDRLLRLCLGRPRR 77 (334)
T ss_pred CCCEEEEEEC--CCCCEEEEECCCC----CC------CCH-----HHHCCCCEEEEECCCCCHHCCCHHHHHHHCCCCCC
T ss_conf 9987999716--7981899989984----30------064-----56465476998267622123579999862799986
Q ss_pred CCEECCHHHHHHHHHHHHHC--C----CCCCCCEEEEC----------------------------CCCEEEECCEEEEE
Q ss_conf 97792999999999999854--8----86556225517----------------------------55557763489999
Q gi|254780869|r 93 VPVYASPFAIGLLEAKRVYE--R----VSKKIPCISFQ----------------------------AGDKVDVGAFSIES 138 (559)
Q Consensus 93 ~pIY~s~~t~~li~~~~~~~--~----~~~~~~~~~i~----------------------------~~~~~~~g~~~v~~ 138 (559)
T Consensus 78 L~IyGP~Gl~~~v~~~L~~y~wnl~~~~~~~~~v~~~e~~~~~~~~~~f~~~~~F~~~~~~~~~~~~~~i~e~~~~~V~a 157 (334)
T PRK02126 78 LRLFGPPGFADQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFRCRRAFRREAEEELSREDGVLLDEPWFRVRA 157 (334)
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEE
T ss_conf 29999824899999986331110124577413899996056532221124321233343223457786578579879999
Q ss_pred EECCCCCCCCCEEEEEECC
Q ss_conf 8556777765356798768
Q gi|254780869|r 139 VRVNHSIPETMALVIRSPV 157 (559)
Q Consensus 139 ~~~~Hsip~a~~~~I~t~~ 157 (559)
T Consensus 158 ~~l~H~ip-~~gY~i~E~~ 175 (334)
T PRK02126 158 AFLDHGIP-CLAFALEEKA 175 (334)
T ss_pred EECCCCCC-CCEEEEEECC
T ss_conf 97479876-4079999788