HHsearch alignment for GI: 254780869 and conserved domain: TIGR00361
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2; InterPro: IPR004797 This is the DNA internalisation-related competence protein ComEC/Rec2 family. Apparent orthologs are found in 5 species so far (Haemophilus influenzae, Escherichia coli, Bacillus subtilis, Neisseria gonorrhoeae, Streptococcus pneumoniae), of which all but E. coli are model systems for the study of competence for natural transformation. This protein is a predicted multiple membrane-spanning protein likely to be involved in DNA internalisation.; GO: 0030420 establishment of competence for transformation, 0016021 integral to membrane.
Probab=93.15 E-value=0.51 Score=26.38 Aligned_cols=128 Identities=20% Similarity=0.264 Sum_probs=68.7
Q ss_pred CEEEEEECC--CCC-----CCCCC---CCEEEECCCHHHHHHHHHC-CCEEEEECCCCCCCCCHHHHHHHCCCC-EECC-
Q ss_conf 648999776--767-----88876---7502870795798766412-468996054301216078889862997-7929-
Q gi|254780869|r 32 RKWIMIDCG--VSF-----PKDDL---PGVDLVFPDITFIMKERKN-LMAIFITHAHEDHYGALHDLWSFLHVP-VYAS- 98 (559)
Q Consensus 32 ~~~iiiD~G--~~f-----p~~~~---~gid~iiPd~~~l~~~~~~-i~~i~iTH~H~DHiGalp~l~~~~~~p-IY~s- 98 (559)
T Consensus 502 ~~~~l~d~gg~~~~~~~~w~~~~~p~~~~~~~~~p---~l~~~~~~~~~~~~l~~~~~d~~g~~~~~l~~~~~~~~~~p~ 578 (731)
T TIGR00361 502 KGRILYDTGGTLSYSSLPWREGQHPFSLGELLLLP---WLTWEGLKQLEGLILSHDDLDHAGGADTLLKHWPVLWLVTPK 578 (731)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEECCC
T ss_conf 53168634762112543466666752100245543---454302101234420023211124056777642001032154
Q ss_pred -----HHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCC-----CCCEEEEEECCCEEEECCCCE
Q ss_conf -----999999999998548865562255175555776348999985567777-----653567987681799833402
Q gi|254780869|r 99 -----PFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIP-----ETMALVIRSPVGNIVHTGDWK 167 (559)
Q Consensus 99 -----~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip-----~a~~~~I~t~~g~i~ytGDfk 167 (559)
T Consensus 579 ~~~~~p~d~~~~~~~~-----~~~~~~~~~~~g~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~l~gd~~ 652 (731)
T TIGR00361 579 GFNSEPKDEKVLQAAR-----LGGEYHEPCKRGDDWQWQGLRFHVLSPLAPDPDSGNNHSCVLWVDDGGNSWLLTGDLE 652 (731)
T ss_pred CCCCCCCHHHHHHHHH-----HCCCHHHHHHCCCCEEECCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCC
T ss_conf 4456640356776654-----0440111221354101114113541554566666776316899716871378722534