HHsearch alignment for GI: 254780869 and conserved domain: TIGR02649
>TIGR02649 true_RNase_BN ribonuclease BN; InterPro: IPR013469 Proteins in this entry include ribonuclease BN of Escherichia coli (strain K-12) and closely related proteins believed to be equivalent in function. E. coli appears to lack RNase Z, and this ribonuclease appears to be orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. ; GO: 0016891 endoribonuclease activity producing 5'-phosphomonoesters, 0042779 removal of tRNA 3'-trailer sequence.
Probab=98.14 E-value=1.1e-05 Score=59.83 Aligned_cols=132 Identities=21% Similarity=0.278 Sum_probs=95.7
Q ss_pred CCCCCCCEEEEEE--ECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 8683466069999--51777864899977676788876750287079579876641246899605430121607888986
Q gi|254780869|r 13 GVGEIGMNMALYG--YGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSF 90 (559)
Q Consensus 13 G~~eiG~N~~~~~--~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~ 90 (559)
T Consensus 10 GvPtr~rnvtaill~lqhPtq~G~WlfdCGeGtqh-q~l--~--------taf~PGkl~~ifishlhGdhlfGlPGllCs 78 (304)
T TIGR02649 10 GVPTRSRNVTAILLNLQHPTQSGLWLFDCGEGTQH-QLL--N--------TAFNPGKLEKIFISHLHGDHLFGLPGLLCS 78 (304)
T ss_pred CCCCCCHHHHHHEEECCCCCCCCEEEEECCCCHHH-HHH--H--------HHCCCCCCEEEEEEEECCCCCCCCCHHHHH
T ss_conf 88755101200001004877674068876875267-888--7--------414887500357542236500155313443
Q ss_pred C-------CCCEECCHHHHHHHHHHHHHCCCCCCC--CEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEEC
Q ss_conf 2-------997792999999999999854886556--22551755557763489999855677776535679876
Q gi|254780869|r 91 L-------HVPVYASPFAIGLLEAKRVYERVSKKI--PCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSP 156 (559)
Q Consensus 91 ~-------~~pIY~s~~t~~li~~~~~~~~~~~~~--~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~ 156 (559)
T Consensus 79 rsm~G~~~Plt~yGPqG~ref~~t~lr~sGsWtd~Pl~i~ei~aG~ilddGlrkvta~~lehPl-eCyGyr~~eh 152 (304)
T TIGR02649 79 RSMAGIIQPLTVYGPQGVREFVETALRLSGSWTDYPLEIVEISAGEILDDGLRKVTAYRLEHPL-ECYGYRVVEH 152 (304)
T ss_pred HHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHCCHHEEEECCCCCC-EECCEEEEEC
T ss_conf 3313777640675662168898766421111013651578622541122000100120146861-0011067751