HHsearch alignment for GI: 254780869 and conserved domain: TIGR02651
>TIGR02651 RNase_Z ribonuclease Z; InterPro: IPR013471 All tRNA molecules are synthesised as long precursors with extra sequence at both the 5' and 3' ends, which undergo several processing steps to form the mature tRNA molecule. In many bacteria the tRNA precursors do not contain the CCA sequence which forms the 3' end of the mature tRNA and is essential for aminoacylation. In these organisms ribonucleotide Z cleaves the precursor to form a 3' end to which CCA is added. Species where all tRNA sequences already have the CCA tail, such as E. coli, do not generally posses this form of ribonuclease Z. ; GO: 0016891 endoribonuclease activity producing 5'-phosphomonoesters, 0042779 removal of tRNA 3'-trailer sequence.
Probab=99.75 E-value=1.5e-16 Score=138.12 Aligned_cols=136 Identities=22% Similarity=0.332 Sum_probs=92.6
Q ss_pred EEEEEECCCC-CCCCCE--EEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH--HHCCCEEEEECCCCC
Q ss_conf 3999940686-834660--69999517778648999776767888767502870795798766--412468996054301
Q gi|254780869|r 5 ELVFLPLGGV-GEIGMN--MALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHED 79 (559)
Q Consensus 5 ~i~~~~lGG~-~eiG~N--~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~--~~~i~~i~iTH~H~D 79 (559)
T Consensus 1 ~i~fLGTGg~~Pt~~Rn~~si~l~~~~e~-g~~~LFDCGEG----TQ~---------Q~~~~~~~~~~i~~IFITH~HGD 66 (327)
T TIGR02651 1 EITFLGTGGGVPTKERNVSSIALKLEDER-GELWLFDCGEG----TQR---------QMLRSGISPMKIDRIFITHLHGD 66 (327)
T ss_pred CEEEEECCCCCCCCCCCCCEEEEECHHHC-CCEEEEECCCH----HHH---------HHHHCCCCCCCCCEEEEECCCHH
T ss_conf 95898527788775647758999602242-87425547718----999---------99971688631113687066314
Q ss_pred CCCCHHHHHHHCC---------CCEECCHHHHHHHHHHHHHCCC--CCCCCEEEECCCC-----------------EEEE
Q ss_conf 2160788898629---------9779299999999999985488--6556225517555-----------------5776
Q gi|254780869|r 80 HYGALHDLWSFLH---------VPVYASPFAIGLLEAKRVYERV--SKKIPCISFQAGD-----------------KVDV 131 (559)
Q Consensus 80 HiGalp~l~~~~~---------~pIY~s~~t~~li~~~~~~~~~--~~~~~~~~i~~~~-----------------~~~~ 131 (559)
T Consensus 67 Hi~GLPGLl~t~sf~G~~r~~pL~IyGP~G~~e~~~~~l~~~~~~~~y~i~~~E~~~~~~~P~~~~~k~k~l~~~~~~~~ 146 (327)
T TIGR02651 67 HILGLPGLLSTMSFQGGGRKEPLTIYGPPGIKEFIETSLRVSYTYLNYPIKIHEIEEKGVLPEFVVYKEKLLEDGLVFED 146 (327)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHCCCEEECCEEEEC
T ss_conf 55423688883103788864452886874479999999986223788415999726899773123102561202326765
Q ss_pred CCEEEEEEECCCCCCCCCEEEEEE
Q ss_conf 348999985567777653567987
Q gi|254780869|r 132 GAFSIESVRVNHSIPETMALVIRS 155 (559)
Q Consensus 132 g~~~v~~~~~~Hsip~a~~~~I~t 155 (559)
T Consensus 147 ~~f~v~~~~l~H~~~-~~GY~~~E 169 (327)
T TIGR02651 147 DGFKVEAFPLDHSIP-SLGYRFEE 169 (327)
T ss_pred CCEEEEEEECCCCCE-EEEEEEEE
T ss_conf 844899995057841-46789986