HHsearch results for GI: 254780869 and protein with PDBid: 2vw8_A
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*
Probab=99.36 E-value=2e-12 Score=106.77 Aligned_cols=141 Identities=21% Similarity=0.325 Sum_probs=95.7
Q ss_pred EEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH---HHCCCEEEEECCCCCCCCCH
Q ss_conf 994068683466069999517778648999776767888767502870795798766---41246899605430121607
Q gi|254780869|r 8 FLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE---RKNLMAIFITHAHEDHYGAL 84 (559)
Q Consensus 8 ~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~---~~~i~~i~iTH~H~DHiGal 84 (559)
+..+|..+ -|||++.- .++.++|||||.. .+. +.+ ...|.+. .++|+.|++||+|.||+|++
T Consensus 16 ~~~~g~~~---~~~yll~~---g~~~~~lIDtG~~--~~~----~~~---~~~l~~~~~~~~~I~~ii~TH~H~DH~gg~ 80 (303)
T 2vw8_A 16 LCLLGDVQ---VPVFLLRL---GEASWALVEGGIS--RDA----ELV---WADLCRWVADPSQVHYWLITHKHYDHCGLL 80 (303)
T ss_dssp EEEESCTT---SCEEEEEE---ETTEEEEECCCCG--GGH----HHH---HHHHHHHCSCGGGEEEEECCCCSTTTTTTH
T ss_pred EEECCCCC---CEEEEEEE---CCCCEEEEECCCC--CHH----HHH---HHHHHHHCCCCHHCCEEEECCCCCCCCCCH
T ss_conf 33137675---27999997---9986899959898--529----999---999998289824279899590998650863
Q ss_pred HHHHHHC-CCCEECCHHHHHHHHHH--------HHHCC-----------CCCCCCEEEECCCCEEEECC-EEEEEEEC-C
Q ss_conf 8889862-99779299999999999--------98548-----------86556225517555577634-89999855-6
Q gi|254780869|r 85 HDLWSFL-HVPVYASPFAIGLLEAK--------RVYER-----------VSKKIPCISFQAGDKVDVGA-FSIESVRV-N 142 (559)
Q Consensus 85 p~l~~~~-~~pIY~s~~t~~li~~~--------~~~~~-----------~~~~~~~~~i~~~~~~~~g~-~~v~~~~~-~ 142 (559)
++|...+ +++||+++.+...+... ..... .........+..++.+++|+ ..++++++ +
T Consensus 81 ~~l~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~lg~~~~~~~i~~PG 160 (303)
T 2vw8_A 81 PYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQRLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHG 160 (303)
T ss_dssp HHHGGGCTTCEEEEEHHHHHHTTCHHHHHHHHHHHHHTCCTTCCCCCCCCGGGSCEEEECTTCEEEEETTEEEEEEECTT
T ss_pred HHHHHCCCCCEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEECCCEEEECCCCCC
T ss_conf 45542167866994488999873630134577777654322102455555666785694799989857822673266799
Q ss_pred CCCCCCCEEEEEECCCEEEECCCC
Q ss_conf 777765356798768179983340
Q gi|254780869|r 143 HSIPETMALVIRSPVGNIVHTGDW 166 (559)
Q Consensus 143 Hsip~a~~~~I~t~~g~i~ytGDf 166 (559)
| .||++++. .+..+++|+||.
T Consensus 161 H-t~g~~~~~--~~~~~~lf~GD~ 181 (303)
T 2vw8_A 161 H-SDDHVVFY--DVRRRRLFCGDA 181 (303)
T ss_dssp S-STTCEEEE--ETTTTEEEEETT
T ss_pred C-CCCCCCEE--ECCCCEEEECCC
T ss_conf 6-99875637--179999998283