HHsearch results for GI: 254780869 and protein with PDBid: 3af5_A
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=100.00 E-value=0 Score=451.35 Aligned_cols=397 Identities=22% Similarity=0.309 Sum_probs=277.8
Q ss_pred CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCC---CEEEECCCHHHHHHHHHCCCEEEEECCCC
Q ss_conf 886399994068683466069999517778648999776767888767---50287079579876641246899605430
Q gi|254780869|r 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLP---GVDLVFPDITFIMKERKNLMAIFITHAHE 78 (559)
Q Consensus 2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~---gid~iiPd~~~l~~~~~~i~~i~iTH~H~ 78 (559)
+++.++++||||++|||+||+++++ ++++||+|||+.|+....+ +.++.+|+++|+.+. ++++||||||||+
T Consensus 185 ~~~~vrit~LGG~~EIGrs~~lv~~----~~~~ILlDcG~~~~~~~~~~~~~p~~~~p~~~~l~~~-~~idAVlITHaH~ 259 (651)
T 3af5_A 185 KSRWIRITGLGGFREVGRSALLVQT----DESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLRE-GLLDAIIITHAHL 259 (651)
T ss_dssp CCSCEEEEEEECSSSSSCCEEEEEE----SSCEEEECCCCCGGGTTCHHHHSCCTTCHHHHHHHHT-TCCCEEECSCSSH
T ss_pred CCCCEEEEEECCCCCCCCCEEEEEE----CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEECCCCH
T ss_conf 9982799993688862466799996----7968999899885656673113677677652123675-6556899788987
Q ss_pred CCCCCHHHHHHH--CCCCEECCHHHHHHHHHHHHHC-------CCCCC----------CCEEEECCCCEEEEC-CEEEEE
Q ss_conf 121607888986--2997792999999999999854-------88655----------622551755557763-489999
Q gi|254780869|r 79 DHYGALHDLWSF--LHVPVYASPFAIGLLEAKRVYE-------RVSKK----------IPCISFQAGDKVDVG-AFSIES 138 (559)
Q Consensus 79 DHiGalp~l~~~--~~~pIY~s~~t~~li~~~~~~~-------~~~~~----------~~~~~i~~~~~~~~g-~~~v~~ 138 (559)
||+|+||||+++ +++|||+|++|..++...+.+. +..+. ..+.+++.+++++++ +|+++|
T Consensus 260 DHiG~LP~L~~~g~~~~PIY~T~~T~~L~~~~~~d~~~i~~~~~~~~~y~~~di~~~~~~~~~l~yge~~~i~pd~~it~ 339 (651)
T 3af5_A 260 DHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTL 339 (651)
T ss_dssp HHHTTHHHHHHTTCCCSCEEECHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTEEECCTTCCEEEETTEEEEE
T ss_pred HHHCCHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEECCCCEEEECCCEEEEE
T ss_conf 88686889997378888776678999999999999999876116777789999999985419957998498079879986
Q ss_pred EECCCCCCCCCEEEEEECC--CEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 8556777765356798768--17998334024677665423898899860878829999635645788877778799999
Q gi|254780869|r 139 VRVNHSIPETMALVIRSPV--GNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKN 216 (559)
Q Consensus 139 ~~~~Hsip~a~~~~I~t~~--g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~ 216 (559)
++++|+ +|++++.|+.++ ++|+|||||+++.++....... .-..++.|++|||++......+++.+.++.
T Consensus 340 ~~aGH~-lGsa~~~i~i~~~~~~IvyTGDfk~~~~~ll~~a~~-------~~~rvd~Li~EsTyg~~~~~~~~r~~~e~~ 411 (651)
T 3af5_A 340 HNAGHI-LGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANA-------KFPRLETLVMESTYGGANDIQMPREEAEKR 411 (651)
T ss_dssp EECSSS-TTCEEEEEEETTTTTCEEECCSCCCSCCSSCCCCCC-------BCSSCSEEEEECTTCSTTCCCCCHHHHHHH
T ss_pred CCCCCC-CCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCC-------CHHHHCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 568988-703089999568866899777878887756687654-------512304002332026777733333579999
Q ss_pred HHHHHHH---CCCCEEEEECHHHHHHHHHHHHHHHHHCCE------EEEECHHHHHHHHHHHH-CCCC----------CC
Q ss_conf 9999862---798399994147789999999999871886------99844869999998874-2876----------77
Q gi|254780869|r 217 IYDIMKN---AKGCVLVTTFSSSVSRIRSIIDIAEQIGRK------IVLLGSSLKRVVSVAID-VGII----------KK 276 (559)
Q Consensus 217 i~~~~~~---~~grViv~~fasni~Ri~~i~~~a~~~~R~------v~i~Grs~~~~~~~a~~-~g~l----------~~ 276 (559)
+.+.+.. ..|+|++++|| ++|+|+++.++.++.|+ +++.|...... .+... ..|+ ..
T Consensus 412 L~~~I~~tl~~gG~VlIp~fa--vgR~QEI~~~l~~~~r~~~~~~pi~~~g~i~~~~-~i~~~~~e~~~~~lr~~~~~~~ 488 (651)
T 3af5_A 412 LIEVIHNTIKRGGKVLIPAMA--VGRAQEVMMVLEEYARIGGIEVPIYLDGMIWEAT-AIHTAYPEYLSRRLREQIFKEG 488 (651)
T ss_dssp HHHHHHHHHHTTCEEEEECCT--TTHHHHHHHHHHHHHTTTCCCSCEEEESSHHHHH-HHHHTCGGGSCHHHHHHTTTSS
T ss_pred HHHHHHHHHHCCCEEEEEECC--CHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH-HHHHHCHHHHHHHHHHHHHHCC
T ss_conf 999999998559869999515--0789999999999987468775088615889999-9999666766589999986355
Q ss_pred CCCC--------CCHHH---HCCCCCCCEEEEEECCC---CCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHH-
Q ss_conf 6542--------26566---22388020899996696---326889885202777653026896699996158861778-
Q gi|254780869|r 277 DQLF--------LSDES---FGLYPREQLIVIATGSQ---GEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVA- 341 (559)
Q Consensus 277 ~~~~--------i~~~~---~~~~p~~~~~ii~TGsq---ge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~- 341 (559)
.+.+ ....+ +.. ..+..++++|..+ |.....+. .+...++|++||++..+||+...
T Consensus 489 ~npf~~~~~~~~~~~~~~~~i~~-~~~p~iilas~gml~~G~~~~~~~--------~l~~d~~n~IIfsgy~~~Gt~gr~ 559 (651)
T 3af5_A 489 YNPFLSEIFHPVANSRERQDIID-SNEPAIIIASSGMLVGGPSVEYFK--------QLAPDPKNSIIFVSYQAEGTLGRQ 559 (651)
T ss_dssp CCSTTCTTEEECCSHHHHHHHHH-SCSCEEEEESCTTSSSSHHHHHHH--------HHTTCTTCEEEECSCCCTTCHHHH
T ss_pred CCCCCCCCCEECCCHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHH--------HHCCCCCCEEEEECCCCCCCHHHH
T ss_conf 68543300230477888998870-699779990661113677999999--------955999898999888789977787
Q ss_pred HHHHHH---HHHCCCEEEEECCCCCCEEC----CCCCCHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHH-HHHHCCCC
Q ss_conf 999997---65103113430356664131----5788978999999754--95399970457799999998-78744786
Q gi|254780869|r 342 IGHIKN---RLVEQGVRVIAEDAECPVHV----SGHPYPNDLKRMYQWI--RPQVLVAIHGEPLHLVAHKE-LALQEGIA 411 (559)
Q Consensus 342 ~~~~~n---~l~~~g~~vi~~~~~~~iH~----SGHa~~edl~~li~~i--kPk~~IPvHGe~rhl~~h~~-la~~~gv~ 411 (559)
+..... .+.+.|..... .....+|+ ||||+++||+.|++.+ ||+++||||||++++.++++ ++++.|+
T Consensus 560 l~~~~~~i~~~~~~g~~~~v-~v~~~V~~~~~fSGHad~~eL~~~i~~v~PkP~~VIpvHGE~~~~~~la~~l~~~~~i- 637 (651)
T 3af5_A 560 VQSGIREIPMVGEEGRTEVI-KVNMEVHTIDGFSGHADRRELMNYVAKVRPRPERIITVHGEPQKCLDLATSIHRKFGI- 637 (651)
T ss_dssp HHHTCSEEEEECGGGCEEEE-ECCSEEEECGGGCSSCCHHHHHHHHHHCBSCCSEEEEESSCHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHCCCCEEE-EEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCC-
T ss_conf 76443355588761775488-7324798778827895999999999975157999999789999999999999998499-
Q ss_pred CEEEECCCEEEEEC
Q ss_conf 31550032278973
Q gi|254780869|r 412 CVPPVRNGKMLRLF 425 (559)
Q Consensus 412 ~i~l~~NGd~i~l~ 425 (559)
++++++||+.++|.
T Consensus 638 ~~~~P~nge~i~lk 651 (651)
T 3af5_A 638 STRAPNNLDTIRLR 651 (651)
T ss_dssp EEECCCTTCEEECC
T ss_pred EEEECCCCCEEEEC
T ss_conf 08878999889829