HHsearch results for GI: 254780869 and protein with PDBid: 3af5_A

>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=100.00  E-value=0  Score=451.35  Aligned_cols=397  Identities=22%  Similarity=0.309  Sum_probs=277.8

Q ss_pred             CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCC---CEEEECCCHHHHHHHHHCCCEEEEECCCC
Q ss_conf             886399994068683466069999517778648999776767888767---50287079579876641246899605430
Q gi|254780869|r    2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLP---GVDLVFPDITFIMKERKNLMAIFITHAHE   78 (559)
Q Consensus         2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~---gid~iiPd~~~l~~~~~~i~~i~iTH~H~   78 (559)
                      +++.++++||||++|||+||+++++    ++++||+|||+.|+....+   +.++.+|+++|+.+. ++++||||||||+
T Consensus       185 ~~~~vrit~LGG~~EIGrs~~lv~~----~~~~ILlDcG~~~~~~~~~~~~~p~~~~p~~~~l~~~-~~idAVlITHaH~  259 (651)
T 3af5_A          185 KSRWIRITGLGGFREVGRSALLVQT----DESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLRE-GLLDAIIITHAHL  259 (651)
T ss_dssp             CCSCEEEEEEECSSSSSCCEEEEEE----SSCEEEECCCCCGGGTTCHHHHSCCTTCHHHHHHHHT-TCCCEEECSCSSH
T ss_pred             CCCCEEEEEECCCCCCCCCEEEEEE----CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEECCCCH
T ss_conf             9982799993688862466799996----7968999899885656673113677677652123675-6556899788987


Q ss_pred             CCCCCHHHHHHH--CCCCEECCHHHHHHHHHHHHHC-------CCCCC----------CCEEEECCCCEEEEC-CEEEEE
Q ss_conf             121607888986--2997792999999999999854-------88655----------622551755557763-489999
Q gi|254780869|r   79 DHYGALHDLWSF--LHVPVYASPFAIGLLEAKRVYE-------RVSKK----------IPCISFQAGDKVDVG-AFSIES  138 (559)
Q Consensus        79 DHiGalp~l~~~--~~~pIY~s~~t~~li~~~~~~~-------~~~~~----------~~~~~i~~~~~~~~g-~~~v~~  138 (559)
                      ||+|+||||+++  +++|||+|++|..++...+.+.       +..+.          ..+.+++.+++++++ +|+++|
T Consensus       260 DHiG~LP~L~~~g~~~~PIY~T~~T~~L~~~~~~d~~~i~~~~~~~~~y~~~di~~~~~~~~~l~yge~~~i~pd~~it~  339 (651)
T 3af5_A          260 DHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTL  339 (651)
T ss_dssp             HHHTTHHHHHHTTCCCSCEEECHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTEEECCTTCCEEEETTEEEEE
T ss_pred             HHHCCHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEECCCCEEEECCCEEEEE
T ss_conf             88686889997378888776678999999999999999876116777789999999985419957998498079879986


Q ss_pred             EECCCCCCCCCEEEEEECC--CEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf             8556777765356798768--17998334024677665423898899860878829999635645788877778799999
Q gi|254780869|r  139 VRVNHSIPETMALVIRSPV--GNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKN  216 (559)
Q Consensus       139 ~~~~Hsip~a~~~~I~t~~--g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~  216 (559)
                      ++++|+ +|++++.|+.++  ++|+|||||+++.++.......       .-..++.|++|||++......+++.+.++.
T Consensus       340 ~~aGH~-lGsa~~~i~i~~~~~~IvyTGDfk~~~~~ll~~a~~-------~~~rvd~Li~EsTyg~~~~~~~~r~~~e~~  411 (651)
T 3af5_A          340 HNAGHI-LGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANA-------KFPRLETLVMESTYGGANDIQMPREEAEKR  411 (651)
T ss_dssp             EECSSS-TTCEEEEEEETTTTTCEEECCSCCCSCCSSCCCCCC-------BCSSCSEEEEECTTCSTTCCCCCHHHHHHH
T ss_pred             CCCCCC-CCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCC-------CHHHHCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf             568988-703089999568866899777878887756687654-------512304002332026777733333579999


Q ss_pred             HHHHHHH---CCCCEEEEECHHHHHHHHHHHHHHHHHCCE------EEEECHHHHHHHHHHHH-CCCC----------CC
Q ss_conf             9999862---798399994147789999999999871886------99844869999998874-2876----------77
Q gi|254780869|r  217 IYDIMKN---AKGCVLVTTFSSSVSRIRSIIDIAEQIGRK------IVLLGSSLKRVVSVAID-VGII----------KK  276 (559)
Q Consensus       217 i~~~~~~---~~grViv~~fasni~Ri~~i~~~a~~~~R~------v~i~Grs~~~~~~~a~~-~g~l----------~~  276 (559)
                      +.+.+..   ..|+|++++||  ++|+|+++.++.++.|+      +++.|...... .+... ..|+          ..
T Consensus       412 L~~~I~~tl~~gG~VlIp~fa--vgR~QEI~~~l~~~~r~~~~~~pi~~~g~i~~~~-~i~~~~~e~~~~~lr~~~~~~~  488 (651)
T 3af5_A          412 LIEVIHNTIKRGGKVLIPAMA--VGRAQEVMMVLEEYARIGGIEVPIYLDGMIWEAT-AIHTAYPEYLSRRLREQIFKEG  488 (651)
T ss_dssp             HHHHHHHHHHTTCEEEEECCT--TTHHHHHHHHHHHHHTTTCCCSCEEEESSHHHHH-HHHHTCGGGSCHHHHHHTTTSS
T ss_pred             HHHHHHHHHHCCCEEEEEECC--CHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH-HHHHHCHHHHHHHHHHHHHHCC
T ss_conf             999999998559869999515--0789999999999987468775088615889999-9999666766589999986355


Q ss_pred             CCCC--------CCHHH---HCCCCCCCEEEEEECCC---CCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHH-
Q ss_conf             6542--------26566---22388020899996696---326889885202777653026896699996158861778-
Q gi|254780869|r  277 DQLF--------LSDES---FGLYPREQLIVIATGSQ---GEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVA-  341 (559)
Q Consensus       277 ~~~~--------i~~~~---~~~~p~~~~~ii~TGsq---ge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~-  341 (559)
                      .+.+        ....+   +.. ..+..++++|..+   |.....+.        .+...++|++||++..+||+... 
T Consensus       489 ~npf~~~~~~~~~~~~~~~~i~~-~~~p~iilas~gml~~G~~~~~~~--------~l~~d~~n~IIfsgy~~~Gt~gr~  559 (651)
T 3af5_A          489 YNPFLSEIFHPVANSRERQDIID-SNEPAIIIASSGMLVGGPSVEYFK--------QLAPDPKNSIIFVSYQAEGTLGRQ  559 (651)
T ss_dssp             CCSTTCTTEEECCSHHHHHHHHH-SCSCEEEEESCTTSSSSHHHHHHH--------HHTTCTTCEEEECSCCCTTCHHHH
T ss_pred             CCCCCCCCCEECCCHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHH--------HHCCCCCCEEEEECCCCCCCHHHH
T ss_conf             68543300230477888998870-699779990661113677999999--------955999898999888789977787


Q ss_pred             HHHHHH---HHHCCCEEEEECCCCCCEEC----CCCCCHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHH-HHHHCCCC
Q ss_conf             999997---65103113430356664131----5788978999999754--95399970457799999998-78744786
Q gi|254780869|r  342 IGHIKN---RLVEQGVRVIAEDAECPVHV----SGHPYPNDLKRMYQWI--RPQVLVAIHGEPLHLVAHKE-LALQEGIA  411 (559)
Q Consensus       342 ~~~~~n---~l~~~g~~vi~~~~~~~iH~----SGHa~~edl~~li~~i--kPk~~IPvHGe~rhl~~h~~-la~~~gv~  411 (559)
                      +.....   .+.+.|..... .....+|+    ||||+++||+.|++.+  ||+++||||||++++.++++ ++++.|+ 
T Consensus       560 l~~~~~~i~~~~~~g~~~~v-~v~~~V~~~~~fSGHad~~eL~~~i~~v~PkP~~VIpvHGE~~~~~~la~~l~~~~~i-  637 (651)
T 3af5_A          560 VQSGIREIPMVGEEGRTEVI-KVNMEVHTIDGFSGHADRRELMNYVAKVRPRPERIITVHGEPQKCLDLATSIHRKFGI-  637 (651)
T ss_dssp             HHHTCSEEEEECGGGCEEEE-ECCSEEEECGGGCSSCCHHHHHHHHHHCBSCCSEEEEESSCHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHCCCCEEE-EEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCC-
T ss_conf             76443355588761775488-7324798778827895999999999975157999999789999999999999998499-


Q ss_pred             CEEEECCCEEEEEC
Q ss_conf             31550032278973
Q gi|254780869|r  412 CVPPVRNGKMLRLF  425 (559)
Q Consensus       412 ~i~l~~NGd~i~l~  425 (559)
                      ++++++||+.++|.
T Consensus       638 ~~~~P~nge~i~lk  651 (651)
T 3af5_A          638 STRAPNNLDTIRLR  651 (651)
T ss_dssp             EEECCCTTCEEECC
T ss_pred             EEEECCCCCEEEEC
T ss_conf             08878999889829