HHsearch results for GI: 254780869 and protein with PDBid: 3bk2_A
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A*
Probab=100.00 E-value=0 Score=987.59 Aligned_cols=539 Identities=32% Similarity=0.550 Sum_probs=511.2
Q ss_pred CCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf 86399994068683466069999517778648999776767888767502870795798766412468996054301216
Q gi|254780869|r 3 NEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYG 82 (559)
Q Consensus 3 ~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiG 82 (559)
+++|+|+||||++|||+|||++++ ++++||+|||++||+++.||+|+++|||+||++++++|+||||||||+||+|
T Consensus 14 ~~~i~i~pLGG~~EIG~n~~~~e~----~~~~iliD~G~~f~~~~~~gid~iiPd~~~l~~~~~~i~ai~lTHaH~DH~G 89 (562)
T 3bk2_A 14 QDHVEIIPLGGMGEIGKNITVFRF----RDEIFVLDGGLAFPEEGMPGVDLLIPRVDYLIEHRHKIKAWVLTHGHEDHIG 89 (562)
T ss_dssp CCCEEEEEEESBSBSSCCEEEEEE----TTEEEEECCCCBCCCTTSTTCCEEEECCHHHHHTGGGEEEEECCCCCHHHHT
T ss_pred CCEEEEEECCCCCHHHHCEEEEEE----CCEEEEEECCCCCCCCCCCCCCEEECCCHHHHHCCCCCEEEEECCCCHHHHC
T ss_conf 882899966888904516799999----9959999589998975688975893696898737667259997998556537
Q ss_pred CHHHHHHH-----CCCCEECCHHHHHHHHHHHHHCCCCC-CCCEEEECCCCEEEECC-EEEEEEECCCCCCCCCEEEEEE
Q ss_conf 07888986-----29977929999999999998548865-56225517555577634-8999985567777653567987
Q gi|254780869|r 83 ALHDLWSF-----LHVPVYASPFAIGLLEAKRVYERVSK-KIPCISFQAGDKVDVGA-FSIESVRVNHSIPETMALVIRS 155 (559)
Q Consensus 83 alp~l~~~-----~~~pIY~s~~t~~li~~~~~~~~~~~-~~~~~~i~~~~~~~~g~-~~v~~~~~~Hsip~a~~~~I~t 155 (559)
||||||+. +++|||||++|++|++.++.+++... .....++++++.+++|+ |+|+||+++||||||+|++|+|
T Consensus 90 alp~Ll~~~~~~~~~~PIY~T~~T~~Ll~~kl~e~~~~~~~~~~~~i~~~~~~~~g~~f~v~~~~v~hsipga~~~~i~t 169 (562)
T 3bk2_A 90 GLPFLLPMIFGKESPVPIYGARLTLGLLRGKLEEFGLRPGAFNLKEISPDDRIQVGRYFTLDLFRMTHSIPDNSGVVIRT 169 (562)
T ss_dssp THHHHHHHHHCSCCCSEEEEEHHHHHHHHHHHHHTTCCSTTSEEEEECTTCEEEETTTEEEEEEECCCSSSSCEEEEEEE
T ss_pred CHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEEEEEEEECCCCCCCCEEEEEEE
T ss_conf 72878875214568858887999999999999972998555531473699659982118999885367777646999982
Q ss_pred CCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHH
Q ss_conf 68179983340246776654238988998608788299996356457888777787999999999862798399994147
Q gi|254780869|r 156 PVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSS 235 (559)
Q Consensus 156 ~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fas 235 (559)
|+|+|+||||||+|.+|..++++|+.++++++++++++|++||||+.++++++||+++.+.+.+++.+++||++++||||
T Consensus 170 ~~g~IlyTGDfr~~~~~~~~~~~d~~~~~~~~~~~vl~l~~~st~~~~~~~~~~E~~~~~~i~~~~~~~~grvii~~fas 249 (562)
T 3bk2_A 170 PIGTIVHTGDFKLDPTPIDGKVSHLAKVAQAGAEGVLLLIADATNAERPGYTPSEMEIAKELDRVIGRAPGRVFVTTFAS 249 (562)
T ss_dssp TTEEEEECCSCCCCSSCTTSCCCCCHHHHHHHHHCCSEEEEECTTTTCCSCCCCHHHHHHHHHHHHHHCSSCEEEECCTT
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 99789998255577777655656889985227778539976878889899997889999999999985799899997040
Q ss_pred HHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCC
Q ss_conf 78999999999987188699844869999998874287677654226566223880208999966963268898852027
Q gi|254780869|r 236 SVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRG 315 (559)
Q Consensus 236 ni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~~~~~~i~~~~~~~~p~~~~~ii~TGsqge~~a~l~ria~~ 315 (559)
|++|+|+++++|+++||+++++||+|.+++.++.+.+|++.+...+..+...+++++++++++||+|||++++|+|++++
T Consensus 250 ni~Riq~i~~~a~~~~r~v~~~g~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~ii~tg~q~e~~~~l~ria~~ 329 (562)
T 3bk2_A 250 HIHRIQSVIWAAEKYGRKVAMEGRSMLKFSRIALELGYLKVKDRLYTLEEVKDLPDHQVLILATGSQGQPMSVLHRLAFE 329 (562)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECHHHHHHHHHHHHTTSCCCSSCCBCTGGGTTSCGGGEEEEECCTTSCSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCCCCCCCCEECCHHHHCCCCCCCEEECCCCCCCHHHHHHHHHCC
T ss_conf 58899999999998498898505118889999997187657753122054310560111031235546667788766416
Q ss_pred CCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 77653026896699996158861778999997651031134303566641315788978999999754953999704577
Q gi|254780869|r 316 EMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEP 395 (559)
Q Consensus 316 ~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~ 395 (559)
.|+.+++.++|+|||||+++||||....++.|++.+.++++++.. ...+|+||||+++||++|++++|||++|||||||
T Consensus 330 ~~~~~~~~~~d~vI~ss~~ipg~e~~~~~~~~~l~~~~~~vi~~~-~~~ih~SGHA~~edLk~~i~~lkPk~vIPVHGE~ 408 (562)
T 3bk2_A 330 GHAKMAIKPGDTVILSSSPIPGNEEAVNRVINRLYALGAYVLYPP-TYKVHASGHASQEELKLILNLTTPRFFLPWHGEV 408 (562)
T ss_dssp CCSSCCCCTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECTT-TSSSCCCSSCCHHHHHHHHHHHCCSEEEEESBCH
T ss_pred CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEECC-CCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 643241289998999830267621479999999997287045314-3354045889999999999863988777855529
Q ss_pred HHHHHHHHHHHHCCC--CCEEEECCCEEEEECCCCEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEEE
Q ss_conf 999999987874478--631550032278973897045012321320212331002550588999974038749999998
Q gi|254780869|r 396 LHLVAHKELALQEGI--ACVPPVRNGKMLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLL 473 (559)
Q Consensus 396 rhl~~h~~la~~~gv--~~i~l~~NGd~i~l~~~~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vii 473 (559)
|||.+|+++|+++|+ +++++++|||+++|.++.+++.+++++|++|+||++++++++.+|+||++||+||+|+|++++
T Consensus 409 ~~l~~~~~la~~~g~~~~~~~i~~nG~~~~~~~~~~~~~~~~~~~~~~vdg~~~~~~~~~vl~~R~~l~~~G~~~v~~~~ 488 (562)
T 3bk2_A 409 RHQMNFKWLAESMSRPPEKTLIGENGAVYRLTRETFEKVGEVPHGVLYVDGLGVGDITEEILADRRHMAEEGLVVITALA 488 (562)
T ss_dssp HHHHHHHHHHHTSSSCCSEECCCCTTEEEEECSSCEEEEEECCCCEEEEETTEEEEECHHHHHHHHHHHHHCEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCCCCEEECEEEECCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEEE
T ss_conf 99999999999819987644880498699954888668154400898994985346767589999999719849999998
Q ss_pred CCCCCEEECCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 38998800537999401212566588999999999999985220036898999999999999999998288867899999
Q gi|254780869|r 474 DNHYNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISSALRSLLKKVWGKKPLVTVFIN 553 (559)
Q Consensus 474 d~~~~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~ir~~irk~~~k~~~KkP~V~v~I~ 553 (559)
|+++. |++.++|++ .+++.+.+++++.+.+.+.+..+. .++++.+++.+|+.+|++++++|+|||+|+|+|+
T Consensus 489 ~~~~~----~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~k~P~v~~~i~ 560 (562)
T 3bk2_A 489 GEDPV----VEVVSRGFV---KAGERLLGEVRRMALEALKNGVRE-KKPLERIRDDIYYPVKKFLKKATGRDPMILPVVI 560 (562)
T ss_dssp SSSCE----EEEEEESCC---HHHHTSHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHSCCCEEEEEEE
T ss_pred CCCCC----EEEEEECCC---CCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 89993----489931565---761889999999999999864313-6619999999999999999999789987999995
Q ss_pred E
Q ss_conf 9
Q gi|254780869|r 554 K 554 (559)
Q Consensus 554 r 554 (559)
+
T Consensus 561 e 561 (562)
T 3bk2_A 561 E 561 (562)
T ss_dssp E
T ss_pred C
T ss_conf 3