Query         gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 559
No_of_seqs    200 out of 1513
Neff          6.9 
Searched_HMMs 23785
Date          Tue May 31 22:00:17 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780869.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3bk2_A RNAse J, metal dependen 100.0       0       0  987.6  60.2  539    3-554    14-561 (562)
  2 2az4_A Hypothetical protein EF 100.0       0       0  476.7  21.8  386    2-424     3-429 (429)
  3 3af5_A Putative uncharacterize 100.0       0       0  451.3  28.6  397    2-425   185-651 (651)
  4 2xr1_A Cleavage and polyadenyl 100.0       0       0  440.1  29.4  391    2-424   180-639 (640)
  5 2i7t_A Cleavage and polyadenyl 100.0       0       0  438.6  25.1  398    2-425     8-457 (459)
  6 2i7x_A Protein CFT2; polyadeny 100.0 4.8E-30   2E-34  233.6  24.5  310   10-349     8-384 (717)
  7 1zkp_A Hypothetical protein BA  99.9 1.6E-21 6.6E-26  172.3  14.6  213    1-250    20-252 (268)
  8 1e5d_A Rubredoxin\:oxygen oxid  99.8 2.3E-19 9.6E-24  156.8  14.9  325   17-383    31-389 (402)
  9 3g1p_A Protein PHNP; C-P lyase  99.8   1E-19 4.4E-24  159.2  10.9  186   19-237    39-227 (258)
 10 1ycg_A Nitric oxide reductase;  99.8 1.6E-18 6.8E-23  150.6  15.1  321   19-383    36-389 (398)
 11 2ohh_A Type A flavoprotein FPR  99.8 7.1E-17   3E-21  138.9  16.4  326   20-383    36-395 (404)
 12 2cbn_A Ribonuclease Z; phospho  99.7 6.6E-16 2.8E-20  131.9  17.6  136    5-155     3-153 (306)
 13 2q9u_A A-type flavoprotein; fl  99.6 2.4E-13   1E-17  113.4  18.5  127   20-167    42-173 (414)
 14 1vme_A Flavoprotein; TM0755, s  99.5   7E-12 2.9E-16  102.9  22.4  124   20-166    53-181 (410)
 15 3jxp_A Coenzyme PQQ synthesis   99.5 8.8E-14 3.7E-18  116.6  12.2  157   20-202    42-227 (321)
 16 3adr_A Putative uncharacterize  99.5 4.4E-13 1.9E-17  111.5  15.6  144    1-167     1-167 (261)
 17 2xf4_A Hydroxyacylglutathione   99.5 2.4E-13   1E-17  113.5  12.2  147    5-170     2-156 (210)
 18 1sml_A Protein (penicillinase)  99.5 1.3E-12 5.6E-17  108.1  14.0  143   15-170    34-190 (269)
 19 1a7t_A Metallo-beta-lactamase;  99.4 6.9E-13 2.9E-17  110.2  10.8  137   11-169    29-168 (232)
 20 3bv6_A Metal-dependent hydrola  99.4 1.1E-10 4.7E-15   94.3  21.9  119   66-199   132-275 (379)
 21 2bib_A CBPE, teichoic acid pho  99.4 2.3E-12 9.5E-17  106.5  12.7  230    2-259     4-282 (547)
 22 3l6n_A Metallo-beta-lactamase;  99.4   1E-12 4.4E-17  108.9  11.0  132   15-168    27-161 (219)
 23 2e7y_A TRNAse Z; tRNA maturati  99.4 3.6E-12 1.5E-16  105.0  13.7  153   20-204    11-215 (280)
 24 2zo4_A Metallo-beta-lactamase   99.4 1.9E-13 8.1E-18  114.2   7.1  136   18-168    21-193 (317)
 25 1y44_A Ribonuclease Z; zinc-de  99.4 4.1E-11 1.7E-15   97.4  18.0  139    5-157     2-153 (320)
 26 2zwr_A Metallo-beta-lactamase   99.4 1.2E-12   5E-17  108.5   9.4  140    7-169     2-148 (207)
 27 1k07_A FEZ-1 beta-lactamase; m  99.4   5E-12 2.1E-16  104.0  12.1  137   18-168    24-177 (263)
 28 2gmn_A Metallo-beta-lactamase;  99.4 2.3E-12 9.5E-17  106.5   9.9  128   15-156    31-169 (274)
 29 1m2x_A Class B carbapenemase B  99.4   6E-12 2.5E-16  103.4  11.5  132   17-170    25-159 (223)
 30 2vw8_A PA1000, PQSE; quinolone  99.4   2E-12 8.6E-17  106.8   8.3  141    8-166    16-181 (303)
 31 2whg_A VIM-4 metallo-beta-lact  99.3 5.5E-12 2.3E-16  103.7   8.6  133   18-168    37-170 (230)
 32 2gcu_A Putative hydroxyacylglu  99.3   2E-11 8.4E-16   99.6  10.3  128   18-168    14-145 (245)
 33 2yz3_A Metallo-beta-lactamase;  99.3 7.3E-12 3.1E-16  102.8   7.8  134   17-169    67-202 (266)
 34 3hnn_A Putative diflavin flavo  99.3 1.2E-10 5.1E-15   94.0  13.9  131   16-167    38-176 (262)
 35 3iog_A Beta-lactamase; hydrola  99.3 2.2E-11 9.2E-16   99.4   9.9  146   11-172    15-173 (227)
 36 3dha_A N-acyl homoserine lacto  99.3 2.1E-11 8.9E-16   99.5   9.8  156    1-167     5-197 (254)
 37 1p9e_A Methyl parathion hydrol  99.3 7.7E-12 3.3E-16  102.6   6.9  139   16-167    94-257 (331)
 38 2wyl_A L-ascorbate-6-phosphate  99.3 4.2E-09 1.8E-13   83.0  20.7  119   66-199   108-250 (360)
 39 1xm8_A Glyoxalase II; structur  99.3 3.1E-11 1.3E-15   98.3   9.7  132    5-168     2-134 (254)
 40 1mqo_A Beta-lactamase II; alph  99.3   3E-11 1.2E-15   98.4   9.6  141    8-170    28-173 (227)
 41 3esh_A Protein similar to meta  99.2 3.5E-12 1.5E-16  105.1   4.4  142   16-167    45-208 (280)
 42 2qed_A Hydroxyacylglutathione   99.2 1.4E-10 5.9E-15   93.6  11.5  131    1-168     5-137 (258)
 43 2p18_A Glyoxalase II; metallop  99.2 6.5E-11 2.7E-15   95.9   8.8  141    4-168    29-183 (311)
 44 1qh5_A Glyoxalase II, protein   99.2 2.3E-10 9.5E-15   92.1  11.1  132    5-168     2-137 (260)
 45 1jjt_A IMP-1 metallo beta-lact  99.2 8.2E-11 3.4E-15   95.2   8.8  134   12-168    26-161 (228)
 46 3kl7_A Putative metal-dependen  99.2 2.2E-09 9.5E-14   84.9  15.8  183   18-254    36-229 (235)
 47 2r2d_A AGR_PTI_140P, Zn-depend  99.2 2.3E-10 9.7E-15   92.0  10.2  142   17-166    41-214 (276)
 48 2fhx_A SPM-1; metallo-beta-lac  99.1 5.8E-10 2.4E-14   89.1  11.7  139   17-170    28-189 (246)
 49 2p4z_A Metal-dependent hydrola  99.0 2.5E-09   1E-13   84.6  11.0   70   15-101    30-103 (284)
 50 1ztc_A Hypothetical protein TM  99.0   3E-11 1.3E-15   98.4  -0.3  146    4-167    13-176 (221)
 51 3md7_A Beta-lactamase-like; ss  99.0 3.8E-08 1.6E-12   76.1  14.7   79   20-111    64-148 (293)
 52 2cfu_A SDSA1; SDS-hydrolase, l  99.0 2.1E-09   9E-14   85.0   8.0  136   19-169   123-303 (658)
 53 1vjn_A Zn-dependent hydrolase   99.0 4.6E-08 1.9E-12   75.5  14.7  121   18-197    19-145 (220)
 54 3h3e_A Uncharacterized protein  98.5 1.5E-06 6.4E-11   64.6  11.7   52   14-89     28-83  (267)
 55 2p97_A Hypothetical protein; p  98.5 3.5E-07 1.5E-11   69.1   8.4  121   15-168    20-140 (201)
 56 3nyt_A Aminotransferase WBPE;   96.4   0.024   1E-06   34.4   9.1   81  320-411    70-152 (367)
 57 3dr4_A Putative perosamine syn  95.0   0.082 3.4E-06   30.5   7.1   22  251-272    96-117 (391)
 58 3frk_A QDTB; aminotransferase,  93.9    0.32 1.3E-05   26.3  10.1   22  251-272    76-97  (373)
 59 2oga_A Transaminase; PLP-depen  93.1    0.43 1.8E-05   25.4  10.3   78  321-409    99-178 (399)
 60 1mdo_A ARNB aminotransferase;   92.4    0.53 2.2E-05   24.7   8.1   79  321-410    75-155 (393)
 61 3b8x_A WBDK, pyridoxamine 5-ph  92.2    0.56 2.3E-05   24.5   8.6   79  321-410    76-156 (390)
 62 2c81_A Glutamine-2-deoxy-scyll  92.0    0.59 2.5E-05   24.4   9.4  153  197-353    27-220 (418)
 63 3bb8_A CDP-4-keto-6-deoxy-D-gl  90.4    0.35 1.5E-05   26.0   4.7   79  321-410   106-186 (437)
 64 3ju7_A Putative PLP-dependent   89.8    0.68 2.9E-05   23.9   5.8   13  369-381   112-124 (377)
 65 2dt8_A DEGV family protein; fa  86.9     1.4 5.8E-05   21.7   6.1  165  206-381    62-243 (280)
 66 2rfg_A Dihydrodipicolinate syn  86.3     1.2   5E-05   22.2   5.3   77  178-256    18-100 (297)
 67 2ehh_A DHDPS, dihydrodipicolin  86.2     1.5 6.3E-05   21.4   7.0   77  178-256    18-100 (294)
 68 2po3_A 4-dehydrase; external a  86.0     1.5 6.4E-05   21.4   8.5  118  210-332    54-196 (424)
 69 1mgp_A Hypothetical protein TM  85.9     1.5 6.5E-05   21.3   7.8  171  207-387    90-279 (313)
 70 2vc6_A MOSA, dihydrodipicolina  84.7     1.4 6.1E-05   21.6   5.0   77  178-256    18-100 (292)
 71 1o69_A Aminotransferase; struc  84.5     1.8 7.5E-05   20.9   8.1   22  251-272    72-93  (394)
 72 3kl7_A Putative metal-dependen  84.0    0.44 1.9E-05   25.3   2.2   44  368-411   185-228 (235)
 73 3b4u_A Dihydrodipicolinate syn  82.1     2.2 9.2E-05   20.2   6.4   77  178-256    21-103 (294)
 74 3cpr_A Dihydrodipicolinate syn  81.3     2.3 9.8E-05   20.1   6.3   77  178-256    34-116 (304)
 75 3fkr_A L-2-keto-3-deoxyarabona  81.3     2.2 9.5E-05   20.2   4.9   77  178-256    26-108 (309)
 76 2r91_A 2-keto-3-deoxy-(6-phosp  81.2     2.4 9.9E-05   20.0   5.2   76  178-256    16-95  (286)
 77 3a5f_A Dihydrodipicolinate syn  80.8     2.4  0.0001   19.9   7.4   78  178-257    19-102 (291)
 78 3fxa_A SIS domain protein; YP_  79.2     2.6 0.00011   19.7   4.7   11  248-258    42-52  (201)
 79 3noe_A DAP-A, dihydrodipicolin  77.7       3 0.00013   19.3   5.7   77  178-256    19-101 (292)
 80 2vpi_A GMP synthase; guanine m  77.5     1.7   7E-05   21.1   3.3   84   26-109    19-113 (218)
 81 2yxg_A DHDPS, dihydrodipicolin  76.2     3.3 0.00014   19.0   7.0   78  178-257    18-101 (289)
 82 3flu_A DHDPS, dihydrodipicolin  76.1     3.3 0.00014   19.0   6.8   78  178-257    25-108 (297)
 83 3m5v_A DHDPS, dihydrodipicolin  76.0     3.3 0.00014   19.0   6.1   77  178-256    25-108 (301)
 84 1o5k_A DHDPS, dihydrodipicolin  75.9     3.3 0.00014   18.9   6.2   77  178-256    30-112 (306)
 85 2nuw_A 2-keto-3-deoxygluconate  74.6     3.6 0.00015   18.7   4.6   76  178-256    17-96  (288)
 86 1xxx_A DHDPS, dihydrodipicolin  74.3     3.6 0.00015   18.7   6.9   70  186-257    44-115 (303)
 87 3eb2_A Putative dihydrodipicol  73.8       3 0.00013   19.3   3.8   77  178-256    22-104 (300)
 88 1a9x_B Carbamoyl phosphate syn  72.4       4 0.00017   18.4   4.4   31  376-411   251-281 (379)
 89 2yva_A DNAA initiator-associat  72.4     3.9 0.00016   18.5   4.1  107  234-358    24-141 (196)
 90 1xky_A Dihydrodipicolinate syn  72.2     4.1 0.00017   18.3   6.0   77  178-256    30-112 (301)
 91 2ojp_A DHDPS, dihydrodipicolin  72.1     4.1 0.00017   18.3   4.3   77  178-256    19-101 (292)
 92 1pzx_A Hypothetical protein AP  71.8     4.1 0.00017   18.3   5.1  167  207-384    64-252 (289)
 93 2r8w_A AGR_C_1641P; APC7498, d  70.8     4.4 0.00018   18.1   6.1   70  186-257    64-135 (332)
 94 1w3i_A EDA, 2-keto-3-deoxy glu  68.2     4.9 0.00021   17.7   4.3   75  178-255    17-95  (293)
 95 1b9h_A AHBA synthase, protein   67.8       5 0.00021   17.7  10.6   60  210-273    40-100 (388)
 96 2wkj_A N-acetylneuraminate lya  67.1     5.1 0.00022   17.6   6.5   77  178-256    29-111 (303)
 97 2hmc_A AGR_L_411P, dihydrodipi  66.3     5.3 0.00022   17.5   4.4   76  178-256    44-123 (344)
 98 2a9v_A GMP synthase; NP_394403  64.7     3.9 0.00016   18.5   2.8   78   31-109    13-102 (212)
 99 2him_A L-asparaginase 1; hydro  64.2     5.8 0.00024   17.2   6.0   16   62-77     96-111 (358)
100 3daq_A DHDPS, dihydrodipicolin  64.1     5.8 0.00024   17.2   7.1   78  178-257    20-103 (292)
101 2am1_A SP protein, UDP-N-acety  64.0     5.9 0.00025   17.2   8.7   39  368-407   324-374 (454)
102 2v9d_A YAGE; dihydrodipicolini  63.4       6 0.00025   17.1   6.0   94  162-257    32-132 (343)
103 3lup_A DEGV family protein; PS  61.1     6.6 0.00028   16.8   7.1  168  206-383    65-250 (285)
104 1f6k_A N-acetylneuraminate lya  59.9     6.9 0.00029   16.7   6.7   77  178-256    21-104 (293)
105 2pcq_A Putative dihidrodipicol  59.6     4.1 0.00017   18.3   2.2   63  188-256    29-93  (283)
106 3dz1_A Dihydrodipicolinate syn  59.4       7 0.00029   16.6   6.7   78  178-257    26-108 (313)
107 3cvj_A Putative phosphoheptose  57.8     7.4 0.00031   16.4   8.2   36  321-358   105-140 (243)
108 3g0t_A Putative aminotransfera  57.0     7.6 0.00032   16.4   7.7   45  213-257   170-221 (437)
109 3h5d_A DHDPS, dihydrodipicolin  55.8       8 0.00033   16.2   6.3   65  186-252    37-103 (311)
110 3jr7_A Uncharacterized EGV fam  50.9     9.4  0.0004   15.7   3.8  157  217-384    88-268 (298)
111 1dos_A Aldolase class II; lyas  49.9     9.8 0.00041   15.6   3.1   43  215-257    15-59  (358)
112 2yvq_A Carbamoyl-phosphate syn  48.6      10 0.00043   15.4   3.7   40   68-107    24-65  (143)
113 2qjw_A Uncharacterized protein  46.9      11 0.00045   15.3   4.3   67  181-268    23-90  (176)
114 3e96_A Dihydrodipicolinate syn  46.7      11 0.00046   15.2   6.6   77  178-256    30-111 (316)
115 1rtt_A Conserved hypothetical   46.5      11 0.00046   15.2   3.4   31  321-351    69-100 (193)
116 1vim_A Hypothetical protein AF  45.3      11 0.00048   15.1   7.6   36  321-358    86-121 (200)
117 2de0_X Alpha-(1,6)-fucosyltran  45.2      11 0.00045   15.3   2.4   15  376-390   389-403 (526)
118 3egl_A DEGV family protein; al  44.2      12  0.0005   15.0   4.6   51  208-258    45-98  (277)
119 2uv9_A Fatty acid synthase alp  43.3      12 0.00051   14.9   7.9   84  295-393   654-748 (1878)
120 2x5d_A Probable aminotransfera  43.0      12 0.00052   14.9   8.0   33  225-257   172-211 (412)
121 1jeo_A MJ1247, hypothetical pr  41.2      13 0.00055   14.7   8.1   36  321-358    79-114 (180)
122 2fnu_A Aminotransferase; prote  40.6      13 0.00056   14.6   8.3  140  210-354    34-212 (375)
123 2dkj_A Serine hydroxymethyltra  38.4     8.3 0.00035   16.1   0.9   66  459-536   330-403 (407)
124 3ecd_A Serine hydroxymethyltra  37.1     4.7  0.0002   17.9  -0.5   73  459-538   339-419 (425)
125 3d0c_A Dihydrodipicolinate syn  36.9      15 0.00064   14.2   5.9   78  177-256    29-111 (314)
126 2uv8_A Fatty acid synthase sub  36.9      15 0.00064   14.2   8.7   84  295-393   677-773 (1887)
127 2g7z_A Conserved hypothetical   36.5      15 0.00065   14.2   5.5   53  206-258    66-119 (282)
128 3elf_A Fructose-bisphosphate a  36.2      16 0.00065   14.1   3.1   42  216-257     8-51  (349)
129 3kts_A Glycerol uptake operon   35.6      16 0.00067   14.1   3.7   40  216-257    21-60  (192)
130 3h7f_A Serine hydroxymethyltra  35.6     9.6  0.0004   15.6   0.9   71  458-537   355-433 (447)
131 1qyc_A Phenylcoumaran benzylic  35.2      16 0.00068   14.0   2.7   83    1-86      1-96  (308)
132 3f0h_A Aminotransferase; RER07  34.4      17  0.0007   13.9   7.7   20  239-258   162-181 (376)
133 3n9r_A Fructose-bisphosphate a  34.0      14 0.00059   14.4   1.6  266  217-542     5-298 (307)
134 2grx_C Protein TONB; beta barr  34.0     8.8 0.00037   15.9   0.5   35  455-490   154-189 (229)
135 2i2w_A Phosphoheptose isomeras  33.2      17 0.00073   13.8   3.5   36  321-358   128-163 (212)
136 3dbi_A Sugar-binding transcrip  32.9      17 0.00073   13.8   6.8   10  345-354   203-212 (338)
137 3ke8_A 4-hydroxy-3-methylbut-2  32.7      18 0.00074   13.7   7.6   43  217-260    90-132 (326)
138 3m92_A Protein YCIN; DUF2498,   32.5      18 0.00074   13.7   2.1   77   74-178     4-83  (107)
139 3gbx_A Serine hydroxymethyltra  31.9      17  0.0007   13.9   1.7   69  459-539   338-414 (420)
140 3oj0_A Glutr, glutamyl-tRNA re  31.8      18 0.00076   13.6   3.6   76  219-303    14-92  (144)
141 3lvm_A Cysteine desulfurase; s  30.9      19 0.00079   13.6   5.4   67  183-258   130-200 (423)
142 2vxo_A GMP synthase [glutamine  30.7      19 0.00079   13.5   3.3  214   30-256    28-272 (697)
143 1m3s_A Hypothetical protein YC  30.5      19  0.0008   13.5   3.6   36  321-358    76-111 (186)
144 1jye_A Lactose operon represso  30.2      19 0.00081   13.5   7.4   66  340-410   196-262 (349)
145 1ibj_A CBL, cystathionine beta  29.4      20 0.00083   13.4   6.6  103  208-315   133-245 (464)
146 2isw_A Putative fructose-1,6-b  29.2      20 0.00084   13.3   2.1  158  217-396     6-182 (323)
147 2f5t_X Archaeal transcriptiona  28.9      20 0.00085   13.3   7.6   50  208-257     6-55  (233)
148 2o0r_A RV0858C (N-succinyldiam  28.9      20 0.00085   13.3   4.1   21  237-257   179-199 (411)
149 1rvg_A Fructose-1,6-bisphospha  28.4      20 0.00084   13.3   1.6  264  217-542     5-296 (305)
150 1cs1_A CGS, protein (cystathio  27.7      21 0.00089   13.2   5.7   26  232-257    72-97  (386)
151 3iv4_A Putative oxidoreductase  27.6      21 0.00089   13.2   4.2   37  384-423    55-95  (112)
152 3hl3_A Glucose-1-phosphate thy  27.5     2.6 0.00011   19.7  -3.1   17  339-355    55-71  (269)
153 1iow_A DD-ligase, DDLB, D-ALA\  27.2      22 0.00091   13.1   1.6   88    1-108     1-97  (306)
154 1wls_A L-asparaginase; structu  26.7      22 0.00092   13.1   2.4   37   61-97     67-106 (328)
155 2dou_A Probable N-succinyldiam  25.9      23 0.00095   12.9   5.8   21  237-257   177-197 (376)
156 3gjz_A Microcin immunity prote  25.3      23 0.00098   12.9   7.3   46  305-353   213-258 (336)
157 2f46_A Hypothetical protein; 7  25.1      23 0.00098   12.9   7.7   57  208-273    86-142 (156)
158 3op7_A Aminotransferase class   24.9      24 0.00099   12.8   3.6   21  237-257   173-193 (375)
159 3c5e_A Acyl-coenzyme A synthet  24.7      24   0.001   12.8   9.0   88  416-512   435-528 (570)
160 1rv3_A Serine hydroxymethyltra  24.7      24   0.001   12.8   2.6   51  459-511   374-431 (483)
161 1e6u_A GDP-fucose synthetase;   24.7      22 0.00092   13.1   1.2   34    1-38      1-34  (321)
162 2k9k_A TONB2; metal transport;  24.6      24   0.001   12.8   4.0   30  459-489    34-64  (106)
163 3n0l_A Serine hydroxymethyltra  24.6      24   0.001   12.8   6.1   47  480-538   360-406 (417)
164 3gdo_A Uncharacterized oxidore  24.5      12 0.00051   14.9  -0.1   24  233-256    98-121 (358)
165 2e7j_A SEP-tRNA:Cys-tRNA synth  24.0      24   0.001   12.7   7.2   53  206-258   128-184 (371)
166 3ndn_A O-succinylhomoserine su  23.9      25   0.001   12.7   4.6   27  231-257   100-126 (414)
167 3brk_X Glucose-1-phosphate ade  23.3      15 0.00063   14.2   0.2   13  457-469   398-410 (420)
168 1ry2_A Acetyl-coenzyme A synth  23.0      26  0.0011   12.6   6.5   11  295-305   267-277 (663)
169 1tzf_A Glucose-1-phosphate cyt  22.9      26  0.0011   12.6   1.4   10  293-302    96-105 (259)
170 1e0t_A Pyruvate kinase, PK; ph  22.5      26  0.0011   12.5   3.0  142  205-353   167-335 (470)
171 3hqn_D Pyruvate kinase, PK; TI  22.2      26  0.0011   12.5   3.2   50  206-257   188-237 (499)
172 1e4e_A Vancomycin/teicoplanin   22.0      27  0.0011   12.4   7.9   44   66-109    89-134 (343)
173 3oqb_A Oxidoreductase; structu  21.8      27  0.0011   12.4   8.3   20  234-253   117-136 (383)
174 2ux8_A Glucose-1-phosphate uri  21.4      25   0.001   12.7   1.0   14  530-543   284-297 (297)
175 1bw0_A TAT, protein (tyrosine   21.3      27  0.0012   12.4   4.6   21  237-257   196-216 (416)
176 3iab_B Ribonucleases P/MRP pro  21.1      28  0.0012   12.3   4.6   41  231-271    39-82  (140)
177 1gd9_A Aspartate aminotransfer  21.0      28  0.0012   12.3   6.6   21  237-257   179-199 (389)
178 3hjh_A Transcription-repair-co  21.0      28  0.0012   12.3   1.8  101   42-146    69-179 (483)
179 4eug_A UDG, UNG, protein (glyc  20.6      28  0.0012   12.2   2.5   53  183-237   111-168 (229)
180 2iz1_A 6-phosphogluconate dehy  20.4      29  0.0012   12.2   9.6   19  228-246   142-160 (474)
181 2a7v_A Serine hydroxymethyltra  20.4      10 0.00043   15.4  -1.2   49  459-509   384-439 (490)
182 2q7w_A Aspartate aminotransfer  20.2      29  0.0012   12.2   7.7   31  227-257   174-211 (396)
183 3gg8_A Pyruvate kinase; malari  20.1      29  0.0012   12.2   3.2   17   71-87     67-84  (511)
184 2v7b_A Benzoate-coenzyme A lig  20.1      29  0.0012   12.2   6.0   52  416-472   408-460 (529)

No 1  
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A*
Probab=100.00  E-value=0  Score=987.59  Aligned_cols=539  Identities=32%  Similarity=0.550  Sum_probs=511.2

Q ss_pred             CCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf             86399994068683466069999517778648999776767888767502870795798766412468996054301216
Q gi|254780869|r    3 NEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYG   82 (559)
Q Consensus         3 ~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiG   82 (559)
                      +++|+|+||||++|||+|||++++    ++++||+|||++||+++.||+|+++|||+||++++++|+||||||||+||+|
T Consensus        14 ~~~i~i~pLGG~~EIG~n~~~~e~----~~~~iliD~G~~f~~~~~~gid~iiPd~~~l~~~~~~i~ai~lTHaH~DH~G   89 (562)
T 3bk2_A           14 QDHVEIIPLGGMGEIGKNITVFRF----RDEIFVLDGGLAFPEEGMPGVDLLIPRVDYLIEHRHKIKAWVLTHGHEDHIG   89 (562)
T ss_dssp             CCCEEEEEEESBSBSSCCEEEEEE----TTEEEEECCCCBCCCTTSTTCCEEEECCHHHHHTGGGEEEEECCCCCHHHHT
T ss_pred             CCEEEEEECCCCCHHHHCEEEEEE----CCEEEEEECCCCCCCCCCCCCCEEECCCHHHHHCCCCCEEEEECCCCHHHHC
T ss_conf             882899966888904516799999----9959999589998975688975893696898737667259997998556537


Q ss_pred             CHHHHHHH-----CCCCEECCHHHHHHHHHHHHHCCCCC-CCCEEEECCCCEEEECC-EEEEEEECCCCCCCCCEEEEEE
Q ss_conf             07888986-----29977929999999999998548865-56225517555577634-8999985567777653567987
Q gi|254780869|r   83 ALHDLWSF-----LHVPVYASPFAIGLLEAKRVYERVSK-KIPCISFQAGDKVDVGA-FSIESVRVNHSIPETMALVIRS  155 (559)
Q Consensus        83 alp~l~~~-----~~~pIY~s~~t~~li~~~~~~~~~~~-~~~~~~i~~~~~~~~g~-~~v~~~~~~Hsip~a~~~~I~t  155 (559)
                      ||||||+.     +++|||||++|++|++.++.+++... .....++++++.+++|+ |+|+||+++||||||+|++|+|
T Consensus        90 alp~Ll~~~~~~~~~~PIY~T~~T~~Ll~~kl~e~~~~~~~~~~~~i~~~~~~~~g~~f~v~~~~v~hsipga~~~~i~t  169 (562)
T 3bk2_A           90 GLPFLLPMIFGKESPVPIYGARLTLGLLRGKLEEFGLRPGAFNLKEISPDDRIQVGRYFTLDLFRMTHSIPDNSGVVIRT  169 (562)
T ss_dssp             THHHHHHHHHCSCCCSEEEEEHHHHHHHHHHHHHTTCCSTTSEEEEECTTCEEEETTTEEEEEEECCCSSSSCEEEEEEE
T ss_pred             CHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEEEEEEEECCCCCCCCEEEEEEE
T ss_conf             72878875214568858887999999999999972998555531473699659982118999885367777646999982


Q ss_pred             CCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHH
Q ss_conf             68179983340246776654238988998608788299996356457888777787999999999862798399994147
Q gi|254780869|r  156 PVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSS  235 (559)
Q Consensus       156 ~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fas  235 (559)
                      |+|+|+||||||+|.+|..++++|+.++++++++++++|++||||+.++++++||+++.+.+.+++.+++||++++||||
T Consensus       170 ~~g~IlyTGDfr~~~~~~~~~~~d~~~~~~~~~~~vl~l~~~st~~~~~~~~~~E~~~~~~i~~~~~~~~grvii~~fas  249 (562)
T 3bk2_A          170 PIGTIVHTGDFKLDPTPIDGKVSHLAKVAQAGAEGVLLLIADATNAERPGYTPSEMEIAKELDRVIGRAPGRVFVTTFAS  249 (562)
T ss_dssp             TTEEEEECCSCCCCSSCTTSCCCCCHHHHHHHHHCCSEEEEECTTTTCCSCCCCHHHHHHHHHHHHHHCSSCEEEECCTT
T ss_pred             CCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             99789998255577777655656889985227778539976878889899997889999999999985799899997040


Q ss_pred             HHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCC
Q ss_conf             78999999999987188699844869999998874287677654226566223880208999966963268898852027
Q gi|254780869|r  236 SVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRG  315 (559)
Q Consensus       236 ni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~~~~~~i~~~~~~~~p~~~~~ii~TGsqge~~a~l~ria~~  315 (559)
                      |++|+|+++++|+++||+++++||+|.+++.++.+.+|++.+...+..+...+++++++++++||+|||++++|+|++++
T Consensus       250 ni~Riq~i~~~a~~~~r~v~~~g~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~ii~tg~q~e~~~~l~ria~~  329 (562)
T 3bk2_A          250 HIHRIQSVIWAAEKYGRKVAMEGRSMLKFSRIALELGYLKVKDRLYTLEEVKDLPDHQVLILATGSQGQPMSVLHRLAFE  329 (562)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECHHHHHHHHHHHHTTSCCCSSCCBCTGGGTTSCGGGEEEEECCTTSCSHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCCCCCCCCEECCHHHHCCCCCCCEEECCCCCCCHHHHHHHHHCC
T ss_conf             58899999999998498898505118889999997187657753122054310560111031235546667788766416


Q ss_pred             CCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf             77653026896699996158861778999997651031134303566641315788978999999754953999704577
Q gi|254780869|r  316 EMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEP  395 (559)
Q Consensus       316 ~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~  395 (559)
                      .|+.+++.++|+|||||+++||||....++.|++.+.++++++.. ...+|+||||+++||++|++++|||++|||||||
T Consensus       330 ~~~~~~~~~~d~vI~ss~~ipg~e~~~~~~~~~l~~~~~~vi~~~-~~~ih~SGHA~~edLk~~i~~lkPk~vIPVHGE~  408 (562)
T 3bk2_A          330 GHAKMAIKPGDTVILSSSPIPGNEEAVNRVINRLYALGAYVLYPP-TYKVHASGHASQEELKLILNLTTPRFFLPWHGEV  408 (562)
T ss_dssp             CCSSCCCCTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECTT-TSSSCCCSSCCHHHHHHHHHHHCCSEEEEESBCH
T ss_pred             CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEECC-CCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCHH
T ss_conf             643241289998999830267621479999999997287045314-3354045889999999999863988777855529


Q ss_pred             HHHHHHHHHHHHCCC--CCEEEECCCEEEEECCCCEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEEE
Q ss_conf             999999987874478--631550032278973897045012321320212331002550588999974038749999998
Q gi|254780869|r  396 LHLVAHKELALQEGI--ACVPPVRNGKMLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLL  473 (559)
Q Consensus       396 rhl~~h~~la~~~gv--~~i~l~~NGd~i~l~~~~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vii  473 (559)
                      |||.+|+++|+++|+  +++++++|||+++|.++.+++.+++++|++|+||++++++++.+|+||++||+||+|+|++++
T Consensus       409 ~~l~~~~~la~~~g~~~~~~~i~~nG~~~~~~~~~~~~~~~~~~~~~~vdg~~~~~~~~~vl~~R~~l~~~G~~~v~~~~  488 (562)
T 3bk2_A          409 RHQMNFKWLAESMSRPPEKTLIGENGAVYRLTRETFEKVGEVPHGVLYVDGLGVGDITEEILADRRHMAEEGLVVITALA  488 (562)
T ss_dssp             HHHHHHHHHHHTSSSCCSEECCCCTTEEEEECSSCEEEEEECCCCEEEEETTEEEEECHHHHHHHHHHHHHCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCCCCEEECEEEECCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEEE
T ss_conf             99999999999819987644880498699954888668154400898994985346767589999999719849999998


Q ss_pred             CCCCCEEECCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             38998800537999401212566588999999999999985220036898999999999999999998288867899999
Q gi|254780869|r  474 DNHYNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISSALRSLLKKVWGKKPLVTVFIN  553 (559)
Q Consensus       474 d~~~~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~ir~~irk~~~k~~~KkP~V~v~I~  553 (559)
                      |+++.    |++.++|++   .+++.+.+++++.+.+.+.+..+. .++++.+++.+|+.+|++++++|+|||+|+|+|+
T Consensus       489 ~~~~~----~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~k~P~v~~~i~  560 (562)
T 3bk2_A          489 GEDPV----VEVVSRGFV---KAGERLLGEVRRMALEALKNGVRE-KKPLERIRDDIYYPVKKFLKKATGRDPMILPVVI  560 (562)
T ss_dssp             SSSCE----EEEEEESCC---HHHHTSHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHSCCCEEEEEEE
T ss_pred             CCCCC----EEEEEECCC---CCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             89993----489931565---761889999999999999864313-6619999999999999999999789987999995


Q ss_pred             E
Q ss_conf             9
Q gi|254780869|r  554 K  554 (559)
Q Consensus       554 r  554 (559)
                      +
T Consensus       561 e  561 (562)
T 3bk2_A          561 E  561 (562)
T ss_dssp             E
T ss_pred             C
T ss_conf             3


No 2  
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP: d.157.1.10
Probab=100.00  E-value=0  Score=476.68  Aligned_cols=386  Identities=23%  Similarity=0.277  Sum_probs=291.3

Q ss_pred             CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCC-CCCCE---------------EEECCCHHH----H
Q ss_conf             886399994068683466069999517778648999776767888-76750---------------287079579----8
Q gi|254780869|r    2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKD-DLPGV---------------DLVFPDITF----I   61 (559)
Q Consensus         2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~-~~~gi---------------d~iiPd~~~----l   61 (559)
                      .+.++++..+||++|||+||+++++    +++.||+|||+.|... ..|+.               +++.|++.+    +
T Consensus         3 ~~~~~~i~f~GG~~eiGg~~~~i~~----~~~~illD~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~   78 (429)
T 2az4_A            3 SKAKTTVTFHSGILTIGGTVIEVAY----KDAHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDLYDPRLGYEYHGA   78 (429)
T ss_dssp             --CCEEEEEEECTTSSSCCEEEEEE----TTEEEEECCCCCCCTTCCCSCCCHHHHHHTTSSCCCSSCBCGGGCCCCCSS
T ss_pred             CCCCEEEEEECCCCCCCCCEEEEEE----CCEEEEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             8884699992799855883899999----990899947999776556754110001112346654333355421110012


Q ss_pred             HHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCC---------CCCCEEEECCCCEEEEC
Q ss_conf             766412468996054301216078889862997792999999999999854886---------55622551755557763
Q gi|254780869|r   62 MKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVS---------KKIPCISFQAGDKVDVG  132 (559)
Q Consensus        62 ~~~~~~i~~i~iTH~H~DHiGalp~l~~~~~~pIY~s~~t~~li~~~~~~~~~~---------~~~~~~~i~~~~~~~~g  132 (559)
                      .++..+++||||||+|.||+|++|+|++  ++|||+++.|+.++..........         ...++..++.++++++|
T Consensus        79 ~~~~~~i~ai~iTH~H~DH~g~l~~l~~--~~piy~~~~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  156 (429)
T 2az4_A           79 EDKDYQHTAVFLSHAHLDHSRMINYLDP--AVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVG  156 (429)
T ss_dssp             CCCCCSEEEEECSCSCHHHHTTGGGBCT--TSCEEEEHHHHHHHHHHTTTSCSSCCCTTSCTTCCCCCEEECTTCEEEET
T ss_pred             CCCCCCCCEEEECCCHHHHHCCHHHHHH--CCCEEECHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEECCCCEEEEC
T ss_conf             2465666589989871726585256761--69765279999999998764000123402221554315995899969977


Q ss_pred             CEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCC-------
Q ss_conf             4899998556777765356798768179983340246776654238988998608788299996356457888-------
Q gi|254780869|r  133 AFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREG-------  205 (559)
Q Consensus       133 ~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~-------  205 (559)
                      +|+|++|+++||||||+||.|++++++|+||||||++....    .....+.+.. +++|+|++|||++..+.       
T Consensus       157 ~~~v~~~~~~Hsi~gs~~~~i~~~~~~i~ytGD~~~~~~~~----~~~~~~~~~~-~~~d~Li~E~T~~~~~~~~~~~~~  231 (429)
T 2az4_A          157 EISVEIVPVDHDAYGASALLIRTPDHFITYTGDLRLHGHNR----EETLAFCEKA-KHTELLMMEGVSISFPEREPDPAQ  231 (429)
T ss_dssp             TEEEEEEECCCSSTTCEEEEEEETTEEEEECCSCCSSSTTH----HHHHHHHHHH-TTCSEEEEECCGGGSCCCCCCTTB
T ss_pred             CEEEEEEECCCCCCCCEEEEEECCCCEEEECCCEEECCCCC----CCHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCC
T ss_conf             77999985667888754899824674588546513158876----4115566662-140233010221024665677555


Q ss_pred             -CCCCHHHHHHHHHHHHH-HCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHH-HCCCCC-CCCCCC
Q ss_conf             -77778799999999986-27983999941477899999999998718869984486999999887-428767-765422
Q gi|254780869|r  206 -TCISEKGIKKNIYDIMK-NAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAI-DVGIIK-KDQLFL  281 (559)
Q Consensus       206 -~~~sE~~v~~~i~~~~~-~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~-~~g~l~-~~~~~i  281 (559)
                       ...+|.++.+.+.+++. +.+++|++++||+|++|+|+|+   .+++|++++.++.+....+... ...++. ....+.
T Consensus       232 ~~~~se~~v~~~i~~~~~~~~~~~Vii~~~a~~~~ri~~I~---~~~~r~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (429)
T 2az4_A          232 IAVVSEEDLVQHLVRLELENPNRQITFNGYPANVERFAKII---EKSPRTVVLEANMAALLLEVFGIEVRYYYAESGKIP  308 (429)
T ss_dssp             CCCCSHHHHHHHHHHHHHTCSSSCEEEEECTTCHHHHHHHH---HHCSSEEEEEHHHHHHHHHHHCCCCEEECSSSSCCT
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH---HHCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             65542899999999999856666154231130199999999---985984999788999999999875364247734444


Q ss_pred             CHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHH-HHHHHHHHHHCCCEEEEECC
Q ss_conf             65662238802089999669632688988520277765302689669999615886177-89999976510311343035
Q gi|254780869|r  282 SDESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEV-AIGHIKNRLVEQGVRVIAED  360 (559)
Q Consensus       282 ~~~~~~~~p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~-~~~~~~n~l~~~g~~vi~~~  360 (559)
                      ..++...++.+++++..+|.+++..+.+.          .+.+++++|+|++.++|++. ......+++.+.++++.   
T Consensus       309 ~~~~~~~v~~~~v~~~~~~~~~~~~~~~~----------~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---  375 (429)
T 2az4_A          309 ELNPALEIPYDTLLKDKTDYLWQVVNQFD----------NLQEGSLYIHSDAQPLGDFDPQYRVFLDLLAKKDITFV---  375 (429)
T ss_dssp             TSCGGGBCCHHHHHHCSSSEEEECCSCGG----------GSCTTCEEEEESCSSCSTTSHHHHHHHHHHHHTTCEEE---
T ss_pred             CHHHHHHCCHHHEEECCCCCHHHHHHHHH----------CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEE---
T ss_conf             45767658985788725421465888873----------35789889996787889800889999999974896799---


Q ss_pred             CCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCEEEEE
Q ss_conf             6664131578897899999975495399970457799999998787447863155003227897
Q gi|254780869|r  361 AECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIACVPPVRNGKMLRL  424 (559)
Q Consensus       361 ~~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~rhl~~h~~la~~~gv~~i~l~~NGd~i~l  424 (559)
                         .+|+||||+++||+.|++.++||++||||||++..     +  .....++.+++||+.++|
T Consensus       376 ---~~~~SgHA~~~eL~~~i~~l~Pk~vipvHg~~~e~-----~--~~~~~~~~ip~~Ge~i~l  429 (429)
T 2az4_A          376 ---RLACSGHAIPEDLDKIIALIEPQVLVPIHTLKPEK-----L--ENPYGERILPERGEQIVL  429 (429)
T ss_dssp             ---ECCCCSSCCHHHHHHHHHHHCCSEEEEESCSCGGG-----C--CCTTSEECCCCTTCEEEC
T ss_pred             ---EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCHHH-----H--HCCCCCEEECCCCCEEEC
T ss_conf             ---88840798999999999973989999958985877-----4--185687898699999979


No 3  
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=100.00  E-value=0  Score=451.35  Aligned_cols=397  Identities=22%  Similarity=0.309  Sum_probs=277.8

Q ss_pred             CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCC---CEEEECCCHHHHHHHHHCCCEEEEECCCC
Q ss_conf             886399994068683466069999517778648999776767888767---50287079579876641246899605430
Q gi|254780869|r    2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLP---GVDLVFPDITFIMKERKNLMAIFITHAHE   78 (559)
Q Consensus         2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~---gid~iiPd~~~l~~~~~~i~~i~iTH~H~   78 (559)
                      +++.++++||||++|||+||+++++    ++++||+|||+.|+....+   +.++.+|+++|+.+. ++++||||||||+
T Consensus       185 ~~~~vrit~LGG~~EIGrs~~lv~~----~~~~ILlDcG~~~~~~~~~~~~~p~~~~p~~~~l~~~-~~idAVlITHaH~  259 (651)
T 3af5_A          185 KSRWIRITGLGGFREVGRSALLVQT----DESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLRE-GLLDAIIITHAHL  259 (651)
T ss_dssp             CCSCEEEEEEECSSSSSCCEEEEEE----SSCEEEECCCCCGGGTTCHHHHSCCTTCHHHHHHHHT-TCCCEEECSCSSH
T ss_pred             CCCCEEEEEECCCCCCCCCEEEEEE----CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEECCCCH
T ss_conf             9982799993688862466799996----7968999899885656673113677677652123675-6556899788987


Q ss_pred             CCCCCHHHHHHH--CCCCEECCHHHHHHHHHHHHHC-------CCCCC----------CCEEEECCCCEEEEC-CEEEEE
Q ss_conf             121607888986--2997792999999999999854-------88655----------622551755557763-489999
Q gi|254780869|r   79 DHYGALHDLWSF--LHVPVYASPFAIGLLEAKRVYE-------RVSKK----------IPCISFQAGDKVDVG-AFSIES  138 (559)
Q Consensus        79 DHiGalp~l~~~--~~~pIY~s~~t~~li~~~~~~~-------~~~~~----------~~~~~i~~~~~~~~g-~~~v~~  138 (559)
                      ||+|+||||+++  +++|||+|++|..++...+.+.       +..+.          ..+.+++.+++++++ +|+++|
T Consensus       260 DHiG~LP~L~~~g~~~~PIY~T~~T~~L~~~~~~d~~~i~~~~~~~~~y~~~di~~~~~~~~~l~yge~~~i~pd~~it~  339 (651)
T 3af5_A          260 DHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTL  339 (651)
T ss_dssp             HHHTTHHHHHHTTCCCSCEEECHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTEEECCTTCCEEEETTEEEEE
T ss_pred             HHHCCHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEECCCCEEEECCCEEEEE
T ss_conf             88686889997378888776678999999999999999876116777789999999985419957998498079879986


Q ss_pred             EECCCCCCCCCEEEEEECC--CEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf             8556777765356798768--17998334024677665423898899860878829999635645788877778799999
Q gi|254780869|r  139 VRVNHSIPETMALVIRSPV--GNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKN  216 (559)
Q Consensus       139 ~~~~Hsip~a~~~~I~t~~--g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~  216 (559)
                      ++++|+ +|++++.|+.++  ++|+|||||+++.++.......       .-..++.|++|||++......+++.+.++.
T Consensus       340 ~~aGH~-lGsa~~~i~i~~~~~~IvyTGDfk~~~~~ll~~a~~-------~~~rvd~Li~EsTyg~~~~~~~~r~~~e~~  411 (651)
T 3af5_A          340 HNAGHI-LGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANA-------KFPRLETLVMESTYGGANDIQMPREEAEKR  411 (651)
T ss_dssp             EECSSS-TTCEEEEEEETTTTTCEEECCSCCCSCCSSCCCCCC-------BCSSCSEEEEECTTCSTTCCCCCHHHHHHH
T ss_pred             CCCCCC-CCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCC-------CHHHHCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf             568988-703089999568866899777878887756687654-------512304002332026777733333579999


Q ss_pred             HHHHHHH---CCCCEEEEECHHHHHHHHHHHHHHHHHCCE------EEEECHHHHHHHHHHHH-CCCC----------CC
Q ss_conf             9999862---798399994147789999999999871886------99844869999998874-2876----------77
Q gi|254780869|r  217 IYDIMKN---AKGCVLVTTFSSSVSRIRSIIDIAEQIGRK------IVLLGSSLKRVVSVAID-VGII----------KK  276 (559)
Q Consensus       217 i~~~~~~---~~grViv~~fasni~Ri~~i~~~a~~~~R~------v~i~Grs~~~~~~~a~~-~g~l----------~~  276 (559)
                      +.+.+..   ..|+|++++||  ++|+|+++.++.++.|+      +++.|...... .+... ..|+          ..
T Consensus       412 L~~~I~~tl~~gG~VlIp~fa--vgR~QEI~~~l~~~~r~~~~~~pi~~~g~i~~~~-~i~~~~~e~~~~~lr~~~~~~~  488 (651)
T 3af5_A          412 LIEVIHNTIKRGGKVLIPAMA--VGRAQEVMMVLEEYARIGGIEVPIYLDGMIWEAT-AIHTAYPEYLSRRLREQIFKEG  488 (651)
T ss_dssp             HHHHHHHHHHTTCEEEEECCT--TTHHHHHHHHHHHHHTTTCCCSCEEEESSHHHHH-HHHHTCGGGSCHHHHHHTTTSS
T ss_pred             HHHHHHHHHHCCCEEEEEECC--CHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH-HHHHHCHHHHHHHHHHHHHHCC
T ss_conf             999999998559869999515--0789999999999987468775088615889999-9999666766589999986355


Q ss_pred             CCCC--------CCHHH---HCCCCCCCEEEEEECCC---CCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHH-
Q ss_conf             6542--------26566---22388020899996696---326889885202777653026896699996158861778-
Q gi|254780869|r  277 DQLF--------LSDES---FGLYPREQLIVIATGSQ---GEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVA-  341 (559)
Q Consensus       277 ~~~~--------i~~~~---~~~~p~~~~~ii~TGsq---ge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~-  341 (559)
                      .+.+        ....+   +.. ..+..++++|..+   |.....+.        .+...++|++||++..+||+... 
T Consensus       489 ~npf~~~~~~~~~~~~~~~~i~~-~~~p~iilas~gml~~G~~~~~~~--------~l~~d~~n~IIfsgy~~~Gt~gr~  559 (651)
T 3af5_A          489 YNPFLSEIFHPVANSRERQDIID-SNEPAIIIASSGMLVGGPSVEYFK--------QLAPDPKNSIIFVSYQAEGTLGRQ  559 (651)
T ss_dssp             CCSTTCTTEEECCSHHHHHHHHH-SCSCEEEEESCTTSSSSHHHHHHH--------HHTTCTTCEEEECSCCCTTCHHHH
T ss_pred             CCCCCCCCCEECCCHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHH--------HHCCCCCCEEEEECCCCCCCHHHH
T ss_conf             68543300230477888998870-699779990661113677999999--------955999898999888789977787


Q ss_pred             HHHHHH---HHHCCCEEEEECCCCCCEEC----CCCCCHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHH-HHHHCCCC
Q ss_conf             999997---65103113430356664131----5788978999999754--95399970457799999998-78744786
Q gi|254780869|r  342 IGHIKN---RLVEQGVRVIAEDAECPVHV----SGHPYPNDLKRMYQWI--RPQVLVAIHGEPLHLVAHKE-LALQEGIA  411 (559)
Q Consensus       342 ~~~~~n---~l~~~g~~vi~~~~~~~iH~----SGHa~~edl~~li~~i--kPk~~IPvHGe~rhl~~h~~-la~~~gv~  411 (559)
                      +.....   .+.+.|..... .....+|+    ||||+++||+.|++.+  ||+++||||||++++.++++ ++++.|+ 
T Consensus       560 l~~~~~~i~~~~~~g~~~~v-~v~~~V~~~~~fSGHad~~eL~~~i~~v~PkP~~VIpvHGE~~~~~~la~~l~~~~~i-  637 (651)
T 3af5_A          560 VQSGIREIPMVGEEGRTEVI-KVNMEVHTIDGFSGHADRRELMNYVAKVRPRPERIITVHGEPQKCLDLATSIHRKFGI-  637 (651)
T ss_dssp             HHHTCSEEEEECGGGCEEEE-ECCSEEEECGGGCSSCCHHHHHHHHHHCBSCCSEEEEESSCHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHCCCCEEE-EEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCC-
T ss_conf             76443355588761775488-7324798778827895999999999975157999999789999999999999998499-


Q ss_pred             CEEEECCCEEEEEC
Q ss_conf             31550032278973
Q gi|254780869|r  412 CVPPVRNGKMLRLF  425 (559)
Q Consensus       412 ~i~l~~NGd~i~l~  425 (559)
                      ++++++||+.++|.
T Consensus       638 ~~~~P~nge~i~lk  651 (651)
T 3af5_A          638 STRAPNNLDTIRLR  651 (651)
T ss_dssp             EEECCCTTCEEECC
T ss_pred             EEEECCCCCEEEEC
T ss_conf             08878999889829


No 4  
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=100.00  E-value=0  Score=440.10  Aligned_cols=391  Identities=19%  Similarity=0.294  Sum_probs=277.6

Q ss_pred             CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf             88639999406868346606999951777864899977676788876750287079579876641246899605430121
Q gi|254780869|r    2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHY   81 (559)
Q Consensus         2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHi   81 (559)
                      +++.++|+||||++|||+||+++++    ++.+||+|||++++.++.++.+..+|++.++    ++++||||||+|+||+
T Consensus       180 ~~~~irit~LGG~~EIGrsc~lv~~----~~~~ILlDcG~~~~~~~~~~~~~~~p~~~~l----~~iDAV~LTHaH~DH~  251 (640)
T 2xr1_A          180 KDQWVRVTALGGCKEVGRSCFLLST----PESRILIDCGVNVGSDENMTPYLYVPEVFPL----NQIDAVIVTHAHLDHQ  251 (640)
T ss_dssp             SCCCCEEEEEECSSSSBCCEEEEEC----SSCEEEECCCCBCSSCSSCCCCTTSTTTCSG----GGCCEEECCSSCHHHH
T ss_pred             CCCEEEEEEECCCCCCCCCEEEEEE----CCCEEEEECCCCCCCCCCCCCCCCCCCCCCH----HHCCEEEECCCCHHHH
T ss_conf             9980899994788861527799996----8969999888887852335744355776873----0188999888976763


Q ss_pred             CCHHHHHHH-CCCCEECCHHHHHHHHHHHHHC-------CCCCC----------CCEEEECCCCEEEEC-CEEEEEEECC
Q ss_conf             607888986-2997792999999999999854-------88655----------622551755557763-4899998556
Q gi|254780869|r   82 GALHDLWSF-LHVPVYASPFAIGLLEAKRVYE-------RVSKK----------IPCISFQAGDKVDVG-AFSIESVRVN  142 (559)
Q Consensus        82 Galp~l~~~-~~~pIY~s~~t~~li~~~~~~~-------~~~~~----------~~~~~i~~~~~~~~g-~~~v~~~~~~  142 (559)
                      |+||||++. +++|||+|+.|+.|++..+.+.       .....          ..+++++.+++++++ +|+|+|++++
T Consensus       252 G~Lp~L~k~g~~~PIY~T~~T~~L~~~ll~d~~~~~~~~~~~~~y~~~~i~~~~~~~i~l~y~e~~~i~~di~Vt~~~aG  331 (640)
T 2xr1_A          252 GLVPLLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAG  331 (640)
T ss_dssp             TTHHHHHHTTCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEECS
T ss_pred             CCHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCEEEECCCCEEEEEECC
T ss_conf             86599985289988997779999999999999987664234688788999988850685589976995797179997268


Q ss_pred             CCCCCCCEE-EEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCC----HHHHHHHH
Q ss_conf             777765356-7987681799833402467766542389889986087882999963564578887777----87999999
Q gi|254780869|r  143 HSIPETMAL-VIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCIS----EKGIKKNI  217 (559)
Q Consensus       143 Hsip~a~~~-~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~s----E~~v~~~i  217 (559)
                      ||+++|+++ .|+++.++|+|||||+++..+..+...+       ....++.|++|+|+.......++    |..+.+.+
T Consensus       332 HslGsA~~~~~I~~g~~~IvyTGDfr~~~~~~l~~a~~-------~~~~~d~lIlesTyg~~~~~~~~~~~~e~~l~~~I  404 (640)
T 2xr1_A          332 HILGSAISHFHIGDGLHNVVFTGDYKYEKTRLFDPAVN-------KFPRVETVISEATYGNANAFQPALKDAEKHLQMVV  404 (640)
T ss_dssp             SSTTCEEEEEEETTTTEEEEECCSCCSSCCSSCCCCCC-------BCSCCSEEEEECTTCSTTCCCCCHHHHHHHHHHHC
T ss_pred             CCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCC-------CHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             77865005789950882699737856676755586543-------01221222100123567767765110899999999


Q ss_pred             HHHHHHCCCCEEEEECHHHHHHHHHHHHHHH---HHCC----EEEEECHHHHHHHHHHHHCCCCCCC----------CCC
Q ss_conf             9998627983999941477899999999998---7188----6998448699999988742876776----------542
Q gi|254780869|r  218 YDIMKNAKGCVLVTTFSSSVSRIRSIIDIAE---QIGR----KIVLLGSSLKRVVSVAIDVGIIKKD----------QLF  280 (559)
Q Consensus       218 ~~~~~~~~grViv~~fasni~Ri~~i~~~a~---~~~R----~v~i~Grs~~~~~~~a~~~g~l~~~----------~~~  280 (559)
                      .+++++ .|+|++++|+  +.|.|+++.++.   +.++    .+++.|..+..........+|++..          +.+
T Consensus       405 ~~tl~~-gg~VlIp~~a--~gR~qEI~~~l~~~~~~g~~~~~~v~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~npf  481 (640)
T 2xr1_A          405 KNTIER-GGIAVIPAFA--VGRSQEVMIVLEESIRKGLIPEVPVYLDGMIWEATAIHATHPEYLNNDLRKLIFQKGQNPF  481 (640)
T ss_dssp             ---------CEEEECCT--TTHHHHHHHHHHHHHHHTSSCCCCEEEESSHHHHHHHHHHCGGGSCHHHHHHC------CT
T ss_pred             HHHHHH-CCCEEEEEEC--HHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC
T ss_conf             999982-9978998632--0369999999999997089877459993146788999996454339799998764344864


Q ss_pred             -----------CCHHHHCCCCCCCEEEEEECCC---CCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH
Q ss_conf             -----------2656622388020899996696---32688988520277765302689669999615886177899999
Q gi|254780869|r  281 -----------LSDESFGLYPREQLIVIATGSQ---GEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIK  346 (559)
Q Consensus       281 -----------i~~~~~~~~p~~~~~ii~TGsq---ge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~  346 (559)
                                 ...+.+... .+..++++|..+   |.....+.+++        -.+.+++||++..+||+.-  .++.
T Consensus       482 ~~~~~~~~~~~~~~~~i~~~-~~p~vilatsgml~~G~~~~~~~~l~--------~d~~n~vIftgy~a~gT~g--r~l~  550 (640)
T 2xr1_A          482 LSECFKPVDSHEARQKIIQN-PQPCVILATSGMMNGGPVMEYFKAFA--------EDPRNTLVFVGYQADGTIG--RRIQ  550 (640)
T ss_dssp             TCTTEEEEC-CHHHHHC-----CCCEEEESCTTSSSSHHHHHHHHHS--------SCTTCEEEECSCCCTTCHH--HHHH
T ss_pred             CCCCCEECCCHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHC--------CCCCCEEEEECCCCCCCHH--HHHH
T ss_conf             33330314877879999747-89859995563345736999999954--------9999989997787899767--7512


Q ss_pred             HHH------HCCCE-EEEECCCCCCE----ECCCCCCHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHH-HHHHCCCCC
Q ss_conf             765------10311-34303566641----315788978999999754--95399970457799999998-787447863
Q gi|254780869|r  347 NRL------VEQGV-RVIAEDAECPV----HVSGHPYPNDLKRMYQWI--RPQVLVAIHGEPLHLVAHKE-LALQEGIAC  412 (559)
Q Consensus       347 n~l------~~~g~-~vi~~~~~~~i----H~SGHa~~edl~~li~~i--kPk~~IPvHGe~rhl~~h~~-la~~~gv~~  412 (559)
                      +..      .+.+. +.+.  ....+    |.||||+++||+.|++.+  ||+++||||||++++...++ +.++.|+ +
T Consensus       551 ~g~~~i~~~~~~~~~~~i~--v~~~V~~~~~fSGHAd~~eL~~~i~~v~prPk~VipvHGe~~~~~~la~~l~~~~~i-~  627 (640)
T 2xr1_A          551 KGWKEIPMTGKNGSTEMLK--MNMEVQVVDGFSGHSDRRQLMEYVKRMQPRPERVFTEHGDEKACVDLASSVYKKLKI-E  627 (640)
T ss_dssp             TTCCC-----------CCC--CCSEEEECCCCSCSCCHHHHHHHHHTCBSCCSEEEEESSCHHHHHHHHHHHHHHHCC-E
T ss_pred             CCCCEEHHHHHCCCCEEEE--EEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCC-C
T ss_conf             2442402676447742686--457898688617997999999999966136999999839989999999999998599-6


Q ss_pred             EEEECCCEEEEE
Q ss_conf             155003227897
Q gi|254780869|r  413 VPPVRNGKMLRL  424 (559)
Q Consensus       413 i~l~~NGd~i~l  424 (559)
                      +.+++|||.++|
T Consensus       628 ~~~p~nge~i~l  639 (640)
T 2xr1_A          628 TRALTNLETVRL  639 (640)
T ss_dssp             EEECCTTCEEEC
T ss_pred             EEECCCCCEEEE
T ss_conf             888899998984


No 5  
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=100.00  E-value=0  Score=438.65  Aligned_cols=398  Identities=17%  Similarity=0.203  Sum_probs=267.7

Q ss_pred             CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf             88639999406868346606999951777864899977676788876750287079579876641246899605430121
Q gi|254780869|r    2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHY   81 (559)
Q Consensus         2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHi   81 (559)
                      ++++++|+||||.+|||+||+++++    ++.+||+|||+.+..+..   + ..|+++++.  .++|+||||||+|.||+
T Consensus         8 ~~~~~~i~~LGG~~eiG~sc~lv~~----~~~~illDcG~~~~~~~~---~-~~p~~~~~~--~~~idai~lTH~H~DH~   77 (459)
T 2i7t_A            8 ESDQLLIRPLGAGQEVGRSCIILEF----KGRKIMLDCGIHPGLEGM---D-ALPYIDLID--PAEIDLLLISHFHLDHC   77 (459)
T ss_dssp             -CEEEEEEEEESSSSSSSCEEEEEE----TTEEEEECCCCCTTSCGG---G-GSCCGGGSC--GGGCCEEECCCSSHHHH
T ss_pred             CCCEEEEEECCCCCCCCCCEEEEEE----CCEEEEEECCCCCCCCCC---C-CCCCCCCCC--CCCCCEEEECCCHHHHH
T ss_conf             9984999982689864568999998----992999958899886520---0-267766678--22299999897858876


Q ss_pred             CCHHHHHHHC--CCCEECCHHHHHHHHHHHHHCCCCCC-----------------CCEEEECCCCEEEECCEEEEEEECC
Q ss_conf             6078889862--99779299999999999985488655-----------------6225517555577634899998556
Q gi|254780869|r   82 GALHDLWSFL--HVPVYASPFAIGLLEAKRVYERVSKK-----------------IPCISFQAGDKVDVGAFSIESVRVN  142 (559)
Q Consensus        82 Galp~l~~~~--~~pIY~s~~t~~li~~~~~~~~~~~~-----------------~~~~~i~~~~~~~~g~~~v~~~~~~  142 (559)
                      ||||||+.+.  +.|||+|++|.++++..+........                 ..+..++.+++..+++++|++++++
T Consensus        78 g~Lp~l~~~~~~~~piy~t~~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ag  157 (459)
T 2i7t_A           78 GALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAG  157 (459)
T ss_dssp             TTHHHHHHHSSCCSEEEEEHHHHHHHHHHHHHHCC---------CCCHHHHHHHGGGEEEECTTCCEEETTEEEEEEECC
T ss_pred             CCHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCEEEECCCCEEEECCEEEEEEECC
T ss_conf             92799998648999888315279999988898775410343235677999997762458707995686087599998447


Q ss_pred             CCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCC--HHHHHHHHHHH
Q ss_conf             7777653567987681799833402467766542389889986087882999963564578887777--87999999999
Q gi|254780869|r  143 HSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCIS--EKGIKKNIYDI  220 (559)
Q Consensus       143 Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~s--E~~v~~~i~~~  220 (559)
                      | +||++++.|++++++|+|||||+++.++.....       .....++|+|++|||++.....+.+  |..+.+.+.+.
T Consensus       158 H-~~g~~~~~i~~~~~~i~ytGD~~~~~~~~l~~~-------~~~~~~~D~Li~est~~~~~~~~~~~~~~~l~~~i~~~  229 (459)
T 2i7t_A          158 H-VLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAA-------EIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDI  229 (459)
T ss_dssp             S-STTCEEEEEEETTEEEEECCSCCCC-----CCC-------CCCSSCCSEEEEECTTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred             C-CCCCEEEEEEECCEEEEECCCCCCCCCCCCCCC-------CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             7-678579999989998885588677786444565-------56776655899956777767897577999999999999


Q ss_pred             HHHCCCCEEEEECHHHHHHHHHHHHHHHHH--------CCEEEEECHHHHHHHHHHHHC-CCCCC----------C---C
Q ss_conf             862798399994147789999999999871--------886998448699999988742-87677----------6---5
Q gi|254780869|r  221 MKNAKGCVLVTTFSSSVSRIRSIIDIAEQI--------GRKIVLLGSSLKRVVSVAIDV-GIIKK----------D---Q  278 (559)
Q Consensus       221 ~~~~~grViv~~fasni~Ri~~i~~~a~~~--------~R~v~i~Grs~~~~~~~a~~~-g~l~~----------~---~  278 (559)
                      +++ .|+|++++|+  +.|.|+++....+.        +..+++.+....+........ .+++.          +   .
T Consensus       230 ~~~-~g~vli~~~~--~gr~~eil~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (459)
T 2i7t_A          230 VNR-GGRGLIPVFA--LGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFK  306 (459)
T ss_dssp             HHT-TCEEEEECCS--SSSHHHHHHHHHHHHHHCGGGTTSCEEEC---------------------------------CC
T ss_pred             HHC-CCCEEEEEEC--CCCHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCC
T ss_conf             864-9927999504--4219999999999987452457752795326899999999874765589999875025763223


Q ss_pred             CCCCHHHHCCCC-CCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHH-HHHHHHHCCCEEE
Q ss_conf             422656622388-02089999669632688988520277765302689669999615886177899-9997651031134
Q gi|254780869|r  279 LFLSDESFGLYP-REQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIG-HIKNRLVEQGVRV  356 (559)
Q Consensus       279 ~~i~~~~~~~~p-~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~-~~~n~l~~~g~~v  356 (559)
                      .+...+.....+ .+..+++++.  +...+..++   .-++.+...+.|+++|+++++||+....- ..-+...+...+.
T Consensus       307 ~~~~~~~~~~~~~~~~~vi~~~~--~~l~~g~s~---~~~~~~~~~~~~~vi~sg~~~~g~~~~~l~~~~~~~~~~~~~~  381 (459)
T 2i7t_A          307 HISNLKSMDHFDDIGPSVVMASP--GMMQSGLSR---ELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQK  381 (459)
T ss_dssp             SEEECCCTTSSCCCSSEEEEESC--TTCSSHHHH---HHHHHHTTCTTCEEEECSCCCTTSHHHHHTTCCSEEECTTSCE
T ss_pred             CEEEECCHHHHCCCCCEEEEECC--CCCCCCHHH---HHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEEECCCE
T ss_conf             20021124453156863999566--244762689---9998735788883997478578768887632662047625948


Q ss_pred             EECCC-CCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH-CCCC-----CEEEECCCEEEEEC
Q ss_conf             30356-6641315788978999999754953999704577999999987874-4786-----31550032278973
Q gi|254780869|r  357 IAEDA-ECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQ-EGIA-----CVPPVRNGKMLRLF  425 (559)
Q Consensus       357 i~~~~-~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~rhl~~h~~la~~-~gv~-----~i~l~~NGd~i~l~  425 (559)
                      +.... -..+|+||||+++||++|++.+|||++||||||++|+..+++.+.+ ....     .+++++||+.++|.
T Consensus       382 ~~~~~~v~~~~~SgHa~~~eL~~~i~~~~Pk~vipvHGe~~~~~~~~~~l~~~~~~~~~~~i~v~~p~nG~~v~l~  457 (459)
T 2i7t_A          382 LPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLN  457 (459)
T ss_dssp             EECCSEEEECCCSCCCCHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHHHSSCTTCCCEEECCCTTCCEEEE
T ss_pred             EEEEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEE
T ss_conf             8866599997643899999999999851999899976998999999999998704045566079878999889972


No 6  
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=99.98  E-value=4.8e-30  Score=233.57  Aligned_cols=310  Identities=14%  Similarity=0.168  Sum_probs=199.3

Q ss_pred             ECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf             40686834660699995177786489997767678887675028707957987664124689960543012160788898
Q gi|254780869|r   10 PLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS   89 (559)
Q Consensus        10 ~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~   89 (559)
                      +.+|.+  ..+|+++++    ++..||+|||....... + .    -.+.++++....|++|||||+|.||+||||||++
T Consensus         8 ~~~g~~--~~~c~lL~~----d~~~ILlDcG~~~~~~~-~-~----~~~~~~~~~~~~IDaVllSHah~DH~GaLP~L~~   75 (717)
T 2i7x_A            8 CDDGSG--TTVGSVVRF----DNVTLLIDPGWNPSKVS-Y-E----QCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYY   75 (717)
T ss_dssp             CCSSSS--SCCCEEEEE----TTEEEEECCCCCTTTSC-H-H----HHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHH
T ss_pred             ECCCCC--CCEEEEEEE----CCEEEEEECCCCCCCCC-H-H----HHHHHHHCCCCCCCEEEECCCCHHHHCCHHHHHH
T ss_conf             148997--303899998----99799998998877677-4-4----5002211265658789977898677546689998


Q ss_pred             H------CCCCEECCHHHHHHHHHHHHHC----CCCC--C---C----------CEEEECCCCEEEE----CCEEEEEEE
Q ss_conf             6------2997792999999999999854----8865--5---6----------2255175555776----348999985
Q gi|254780869|r   90 F------LHVPVYASPFAIGLLEAKRVYE----RVSK--K---I----------PCISFQAGDKVDV----GAFSIESVR  140 (559)
Q Consensus        90 ~------~~~pIY~s~~t~~li~~~~~~~----~~~~--~---~----------~~~~i~~~~~~~~----g~~~v~~~~  140 (559)
                      .      +++|||||+.|..|.+..+.+.    ....  +   +          .+.+++.++++.+    .+++|+|++
T Consensus        76 ~~~~~~g~~~pIYaT~pt~~L~~~~l~D~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~l~Y~q~~~l~~~~~gl~it~~~  155 (717)
T 2i7x_A           76 NFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYN  155 (717)
T ss_dssp             HSHHHHHHTCEEEEEHHHHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEE
T ss_pred             HCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEECCCCEEECCCCCCCEEEEEEE
T ss_conf             51323698888996689999999999999997531165556678999999998504894799859803788857999965


Q ss_pred             CCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHH-----HHHCCCCCCEEEEECCCCCCCCCCC--CCHHHH
Q ss_conf             567777653567987681799833402467766542389889-----9860878829999635645788877--778799
Q gi|254780869|r  141 VNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDS-----LCAIGNEGILALMCDSTNAMREGTC--ISEKGI  213 (559)
Q Consensus       141 ~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~-----l~~~~~~gv~~Li~esT~~~~~~~~--~sE~~v  213 (559)
                      ++| ++|++++.|+.+.++|+|||||.....+..... ++..     +..+.  ..++||+++++. .....  ..+..+
T Consensus       156 AGH-~LGsa~~~I~~~~~~IvytgD~n~~~~~~L~ga-~~~~~~~~~~~~l~--~~~~li~~t~~~-~~~~~~~~~~~~l  230 (717)
T 2i7x_A          156 AGV-CPGGSIWCISTYSEKLVYAKRWNHTRDNILNAA-SILDATGKPLSTLM--RPSAIITTLDRF-GSSQPFKKRSKIF  230 (717)
T ss_dssp             CSS-STTCEEEEEECSSCEEEECSSCCSSCCSSCCCC-TTBCTTSCBCSTTS--SCSEEEECCSCC-CCSSCHHHHHHHH
T ss_pred             CCC-CCCCEEEEEEECCEEEEEECCCCCCCCCEECCC-CCCCCCCCCCCCCC--CCCEEEEECCCC-CCCCCHHHHHHHH
T ss_conf             563-234269999829959999636788887300475-33455788643356--787899807788-8778869999999


Q ss_pred             HHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHH-----------CCEEEEECHHHHHHHHHHHHC-CCC-------
Q ss_conf             9999999862798399994147789999999999871-----------886998448699999988742-876-------
Q gi|254780869|r  214 KKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQI-----------GRKIVLLGSSLKRVVSVAIDV-GII-------  274 (559)
Q Consensus       214 ~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~-----------~R~v~i~Grs~~~~~~~a~~~-g~l-------  274 (559)
                      .+.+.+++++ .|.|++++|+  ++|+|+++..-...           .-+|++.+..-.+.+..++.. .++       
T Consensus       231 ~~~I~~tl~~-gG~VLIP~fa--~GR~qELl~~L~~~~~~~~~~~~~~~~PIyl~S~~a~~~~~~a~s~~Ewm~~~i~k~  307 (717)
T 2i7x_A          231 KDTLKKGLSS-DGSVIIPVDM--SGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKT  307 (717)
T ss_dssp             HHHHHHHTST-TCEEEEEECT--TTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHHTCGGGSCHHHHHH
T ss_pred             HHHHHHHHHC-CCEEEEEECC--CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf             9999999977-9989997268--628999999999999861442578872089987789999999999998747898888


Q ss_pred             -------CCC-----CCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHH
Q ss_conf             -------776-----54226566223880208999966963268898852027776530268966999961588617789
Q gi|254780869|r  275 -------KKD-----QLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAI  342 (559)
Q Consensus       275 -------~~~-----~~~i~~~~~~~~p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~  342 (559)
                             ++.     ..+...+++...|. -.+|+||+..|..+..|.++|.+        +..+|||..+..|+. .+.
T Consensus       308 fe~~~~~~pF~~~~~~~~~~~~el~~~~~-PkVVlas~~~G~s~~~l~~la~d--------~kN~VilT~~~~~~~-~~~  377 (717)
T 2i7x_A          308 WENRNNTSPFEIGSRIKIIAPNELSKYPG-SKICFVSEVGALINEVIIKVGNS--------EKTTLILTKPSFECA-SSL  377 (717)
T ss_dssp             HHSSSSCCTTCCTTTEEECCGGGGGGCCS-CEEEEEESCHHHHHHHHHHHSSC--------TTEEEEECSSCCTTC-HHH
T ss_pred             HHHHCCCCCCCCCEEEECCCHHHHHHCCC-CCEEEEECCCCCHHHHHHHHCCC--------CCCEEEEECCCCCCC-HHH
T ss_conf             88645766534420421167988961789-84899808974099999997089--------986799946887752-156


Q ss_pred             HHHHHHH
Q ss_conf             9999765
Q gi|254780869|r  343 GHIKNRL  349 (559)
Q Consensus       343 ~~~~n~l  349 (559)
                      .++.++.
T Consensus       378 ~~~~~~~  384 (717)
T 2i7x_A          378 DKILEIV  384 (717)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             7899987


No 7  
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein structure initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9
Probab=99.88  E-value=1.6e-21  Score=172.31  Aligned_cols=213  Identities=16%  Similarity=0.284  Sum_probs=139.4

Q ss_pred             CCCCEEEEEECCCCCCC-----CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHH--HHHCCCEEEE
Q ss_conf             98863999940686834-----6606999951777864899977676788876750287079579876--6412468996
Q gi|254780869|r    1 MKNEELVFLPLGGVGEI-----GMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMK--ERKNLMAIFI   73 (559)
Q Consensus         1 m~~~~i~~~~lGG~~ei-----G~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~--~~~~i~~i~i   73 (559)
                      |+++++++..||..+..     +.||++++.    +++.||||||-....              .|.+  ...+|++|||
T Consensus        20 ~~~~~m~~~~lG~~~~~~~~~~~~S~~Li~~----~~~~iLiD~G~g~~~--------------~l~~~~~~~~id~I~i   81 (268)
T 1zkp_A           20 FQSNAMKMTVVGFWGGFPEAGEATSGYLFEH----DGFRLLVDCGSGVLA--------------QLQKYITPSDIDAVVL   81 (268)
T ss_dssp             CCSSCEEEEEEECBSSSCCTTCCBSEEEEEE----TTEEEEECCCTTHHH--------------HHTTTCCGGGCCEEEC
T ss_pred             CCCCCCEEEEEECCCCCCCCCCCCCEEEEEE----CCCEEEEECCHHHHH--------------HHHHCCCHHHCCEEEE
T ss_conf             4689778999924899599999646799999----992899959767999--------------9985498524979999


Q ss_pred             ECCCCCCCCCHHHHHHHC-----------CCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECC
Q ss_conf             054301216078889862-----------997792999999999999854886556225517555577634899998556
Q gi|254780869|r   74 THAHEDHYGALHDLWSFL-----------HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVN  142 (559)
Q Consensus        74 TH~H~DHiGalp~l~~~~-----------~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~  142 (559)
                      ||+|.||+|++|+|....           ..|||+.+++...+..    ..........++.++..+++|+++|+++++.
T Consensus        82 TH~H~DH~~gl~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ig~~~v~~~~~~  157 (268)
T 1zkp_A           82 SHYHHDHVADIGVLQYARLITSATKGQLPELPIYGHTFDENGFHS----LTHEPHTKGIPYNPEETLQIGPFSISFLKTV  157 (268)
T ss_dssp             SCCCHHHHTTHHHHHHHHHHHHHHHCCCCCEEEEECSSSHHHHHT----TCBTTTEEEEECCTTSCEEETTEEEEEEECC
T ss_pred             ECCCHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHH----HHHHCCCCEEECCCCCEEEEEEEEEEEECCC
T ss_conf             279603333448887654202333356774458833667889987----6542255337706875598412899740377


Q ss_pred             CCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCC-HHHHHHHHHHHH
Q ss_conf             7777653567987681799833402467766542389889986087882999963564578887777-879999999998
Q gi|254780869|r  143 HSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCIS-EKGIKKNIYDIM  221 (559)
Q Consensus       143 Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~s-E~~v~~~i~~~~  221 (559)
                      |++ +++|+.|+.++++++||||-..        ..++..+.    +++|+|++|+|.......... .....+ ..++.
T Consensus       158 H~~-~~~g~~i~~~~~~i~ysgDt~~--------~~~~~~~~----~~~Dlli~e~~~~~~~~~~~~~H~~~~e-a~~l~  223 (268)
T 1zkp_A          158 HPV-TCFAMRITAGNDIVVYSADSSY--------IPEFIPFT----KDADLFICECNMYAHQEAAKAGHMNSTE-VASIA  223 (268)
T ss_dssp             SSS-CCEEEEEEETTEEEEECCSCCC--------CTTHHHHH----TTCSEEEEECCBCTTSCCGGGTCCBHHH-HHHHH
T ss_pred             CCC-CCCEEEEECCCCEEEECCCCCC--------CCHHHHHH----CCCCEEEEECCCCCCHHCCCCCCCCHHH-HHHHH
T ss_conf             778-7413477427977998888998--------81466653----3576899977887300026666899999-99999


Q ss_pred             HHCC-CCEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf             6279-8399994147789999999999871
Q gi|254780869|r  222 KNAK-GCVLVTTFSSSVSRIRSIIDIAEQI  250 (559)
Q Consensus       222 ~~~~-grViv~~fasni~Ri~~i~~~a~~~  250 (559)
                      +..+ .+++++=|+. ..+-+.+.+.+++.
T Consensus       224 ~~~~~k~lvl~H~~~-~~~~~~~~~~~~~~  252 (268)
T 1zkp_A          224 KDANVKELLLTHLPH-TGNPADLVTEAKQI  252 (268)
T ss_dssp             HHTTCSEEEEESBCS-SSCTHHHHHHHHTT
T ss_pred             HHCCCCEEEEECCCC-CCCHHHHHHHHHHH
T ss_conf             981979899989798-79999999999986


No 8  
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.83  E-value=2.3e-19  Score=156.77  Aligned_cols=325  Identities=14%  Similarity=0.110  Sum_probs=182.4

Q ss_pred             CCC--EEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH--HHCCCEEEEECCCCCCCCCHHHHHHHC-
Q ss_conf             466--069999517778648999776767888767502870795798766--412468996054301216078889862-
Q gi|254780869|r   17 IGM--NMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHEDHYGALHDLWSFL-   91 (559)
Q Consensus        17 iG~--N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~--~~~i~~i~iTH~H~DHiGalp~l~~~~-   91 (559)
                      .|.  |||++.     +++.+|||+|.  +...    +.+   .+.|.+.  .++|+.|++||+|.||+|+++.+.+.+ 
T Consensus        31 ~G~s~N~YlI~-----~e~~vLIDtg~--~~~~----~~~---~~~l~~~i~~~~I~~II~TH~H~DHiggl~~l~~~~~   96 (402)
T 1e5d_A           31 MGTTYNAYLVE-----DEKTTLFDTVK--AEYK----GEL---LCGIASVIDPKKIDYLVIQHLELDHAGALPALIEACQ   96 (402)
T ss_dssp             TCEEEEEEEEC-----SSSCEEECCCC--GGGH----HHH---HHHHHTTSCGGGCCEEEECCCSHHHHTTHHHHHHHHC
T ss_pred             CCEEEEEEEEE-----CCCEEEECCCC--HHHH----HHH---HHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf             96289999997-----69999995998--2469----999---9999975698788889939996678867999999779


Q ss_pred             CCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCC-CCCCCCEEEEEECCCEEEECCCCEECC
Q ss_conf             9977929999999999998548865562255175555776348999985567-777653567987681799833402467
Q gi|254780869|r   92 HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNH-SIPETMALVIRSPVGNIVHTGDWKLDD  170 (559)
Q Consensus        92 ~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~H-sip~a~~~~I~t~~g~i~ytGDfk~d~  170 (559)
                      +++||+++.+...+.....    ....+...++.++++++|+++++++++.+ .-|+  .+.+..+..+++||||+-...
T Consensus        97 ~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~l~~g~~~l~~i~~p~~h~~~--~~~~~~~~~~ilfsgD~~~~~  170 (402)
T 1e5d_A           97 PEKIFTSSLGQKAMESHFH----YKDWPVQVVKHGETLSLGKRTVTFYETRMLHWPD--SMVSWFADEKVLISNDIFGQN  170 (402)
T ss_dssp             CSEEEEEHHHHHHHHHHHC----CSSCCEEEECTTCEEECSSCEEEEEECTTSSSTT--CEEEEETTTTEEEEETTTCCC
T ss_pred             CCEEEECHHHHHHHHHCCC----CCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCC--CEEEEECCCCCEEECCCCCCC
T ss_conf             9989975778888773146----7664320025863898489368999677777789--669998688807704545677


Q ss_pred             CCCCCCCC---CHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECH------HHHHHH
Q ss_conf             76654238---98899860878829999635645788877778799999999986-279839999414------778999
Q gi|254780869|r  171 DAILGDVT---DKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMK-NAKGCVLVTTFS------SSVSRI  240 (559)
Q Consensus       171 ~p~~g~~~---d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~-~~~grViv~~fa------sni~Ri  240 (559)
                      .+..+...   +...+..-           .......-..+.-....+.++++.. +.+=+.|++.-.      .++.+.
T Consensus       171 ~~~~~~~~d~~~~~~~~~~-----------~~~~~~~i~~~~~~~~~~~L~~l~~l~l~~~~I~PgHGpv~~~~~~i~~~  239 (402)
T 1e5d_A          171 IAASERFSDQIPVHTLERA-----------MREYYANIVNPYAPQTLKAIETLVGAGVAPEFICPDHGVIFRGADQCTFA  239 (402)
T ss_dssp             CCCSCCBGGGSCHHHHHHH-----------HHHHHHHHTGGGHHHHHHHHHHHHHTTCCCSEEEESSSCBEESHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHH-----------HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCEECCHHHHHHH
T ss_conf             7887622344544568999-----------87656540576399999999999866998138963684301583779999


Q ss_pred             HHHH--HHHHHHCCEEEEECHHHH----HHH----HHHHHCCCC-CC-CCCCCCHHH-HCCCCCCCEEEEEECCCCCH--
Q ss_conf             9999--999871886998448699----999----988742876-77-654226566-22388020899996696326--
Q gi|254780869|r  241 RSII--DIAEQIGRKIVLLGSSLK----RVV----SVAIDVGII-KK-DQLFLSDES-FGLYPREQLIVIATGSQGEP--  305 (559)
Q Consensus       241 ~~i~--~~a~~~~R~v~i~Grs~~----~~~----~~a~~~g~l-~~-~~~~i~~~~-~~~~p~~~~~ii~TGsqge~--  305 (559)
                      .+.+  .++.+.++|+++.-.||.    ++.    +.+.+.|.- .. +-...+.++ ...+.+.+.+++.|.+.+..  
T Consensus       240 ~~~y~~~~~~~~~~kv~i~Y~S~~GnT~~~a~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gspt~~~~~~  319 (402)
T 1e5d_A          240 VQKYVEYAEQKPTNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHNNGIL  319 (402)
T ss_dssp             HHHHHHHHHCCCCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBTTBCC
T ss_pred             HHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCC
T ss_conf             99999997325567447999389875999999999888655965999985668757778889758969997047588643


Q ss_pred             ---HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHH
Q ss_conf             ---88988520277765302689669999615886177899999765103113430356664131578897899999975
Q gi|254780869|r  306 ---RSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQW  382 (559)
Q Consensus       306 ---~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~  382 (559)
                         ...|.++..     ..++..-..+|+|..  |++.++..+.+.|...|++++.    ..++++||++.+|++.+.++
T Consensus       320 ~~~~~~l~~~~~-----~~~~~k~~~~Fgs~g--~~~~a~~~l~~~l~~~g~~~v~----~~~~~~~~p~~~d~~~~~~~  388 (402)
T 1e5d_A          320 PYVAGTLQYIKG-----LRPQNKIGGAFGSFG--WSGESTKVLAEWLTGMGFDMPA----TPVKVKNVPTHADYEQLKTM  388 (402)
T ss_dssp             HHHHHHHHHHHH-----TCCCSCEEEEEEEES--SSCHHHHHHHHHHHHTTCBCCS----CCEEEESSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-----CCCCCCEEEEEECCC--CCCHHHHHHHHHHHHCCCEEEC----CCEEEEECCCHHHHHHHHHH
T ss_conf             999999999854-----665899899998489--8838999999999977998957----85799617998999999999


Q ss_pred             C
Q ss_conf             4
Q gi|254780869|r  383 I  383 (559)
Q Consensus       383 i  383 (559)
                      .
T Consensus       389 ~  389 (402)
T 1e5d_A          389 A  389 (402)
T ss_dssp             H
T ss_pred             H
T ss_conf             9


No 9  
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli}
Probab=99.81  E-value=1e-19  Score=159.21  Aligned_cols=186  Identities=15%  Similarity=0.117  Sum_probs=124.2

Q ss_pred             CEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHH--CCCCEE
Q ss_conf             606999951777864899977676788876750287079579876641246899605430121607888986--299779
Q gi|254780869|r   19 MNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSF--LHVPVY   96 (559)
Q Consensus        19 ~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~--~~~pIY   96 (559)
                      .+|++++.    ++..+|||||...               .-+.....+|++|||||+|.||+++|+.+...  .++|||
T Consensus        39 ~ss~li~~----~~~~iLiD~G~~~---------------~~~~~~~~~id~I~iTH~H~DH~~GL~~l~~~~~~~i~iy   99 (258)
T 3g1p_A           39 PCSGVVKF----NDAITLIDAGLHD---------------LADRWSPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVY   99 (258)
T ss_dssp             BSEEEEEE----TTEEEEECCCCTT---------------HHHHCCTTSSCEEECSCCCHHHHGGGTTTTTCSSSCEEEE
T ss_pred             EEEEEEEE----CCEEEEEECCHHH---------------HHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCEE
T ss_conf             34999998----9978999899999---------------9866898588799981674102446245544225785389


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCC
Q ss_conf             29999999999998548865562255175555776348999985567777653567987681799833402467766542
Q gi|254780869|r   97 ASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGD  176 (559)
Q Consensus        97 ~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~  176 (559)
                      +++.+..+.. .+....  .......+++++.+++++++|+++++.|+. .++||.|+.++++++|+||..-        
T Consensus       100 ~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~H~~-~~~g~~i~~~~~~i~y~gDt~~--------  167 (258)
T 3g1p_A          100 GPPDEQGCDD-LFKHPG--LLDFSHTVEPFVVFDLQGLQVTPLPLNHSK-LTFGYLLETAHSRVAWLSDTAG--------  167 (258)
T ss_dssp             ECCCSSCSTT-TTTSCT--TEEEEEECCTTCCEEETTEEEEEEECCSSS-CCEEEEEECSSCEEEEECSCSS--------
T ss_pred             ECCCCCCHHH-HHCCCC--CCCCCCCCCCCEEEECCCEEEECCCCCCCC-CCEEEEEECCCEEEEECCCCCC--------
T ss_conf             5441120224-422566--543212356636885052441313247898-7549999629826998486788--------


Q ss_pred             CCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECHHHH
Q ss_conf             38988998608788299996356457888777787999999999862-79839999414778
Q gi|254780869|r  177 VTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKN-AKGCVLVTTFSSSV  237 (559)
Q Consensus       177 ~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~-~~grViv~~fasni  237 (559)
                       .+...+..+...++|+|+.|+|+..+.....+...+.+.++ +.+. ...+++++=++.++
T Consensus       168 -~~~~~~~~l~~~~~d~li~d~~~~~~~~~~~~H~~~~ea~~-~~~~~~~k~~vl~H~s~~~  227 (258)
T 3g1p_A          168 -LPEKTLKFLRNNQPQVMVMDCSHPPRADAPRNHCDLNTVLA-LNQVIRSPRVILTHISHQF  227 (258)
T ss_dssp             -CCHHHHHHHHHTCCSEEEEECCBSSCSSCCSSSCBHHHHHH-HHHHHCCSCEEEESCCHHH
T ss_pred             -CCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHH-HHHHCCCCEEEEECCCCCC
T ss_conf             -89899999618998899954877622379999989999999-9997198989998889988


No 10 
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.80  E-value=1.6e-18  Score=150.62  Aligned_cols=321  Identities=18%  Similarity=0.148  Sum_probs=180.2

Q ss_pred             CEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH--HHCCCEEEEECCCCCCCCCHHHHHHHC-CCCE
Q ss_conf             6069999517778648999776767888767502870795798766--412468996054301216078889862-9977
Q gi|254780869|r   19 MNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHEDHYGALHDLWSFL-HVPV   95 (559)
Q Consensus        19 ~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~--~~~i~~i~iTH~H~DHiGalp~l~~~~-~~pI   95 (559)
                      -|||++.     +++.+|||+|..  ..    .+.+   .+.|++.  .++|+.|++||+|.||+|+++++...+ ++++
T Consensus        36 ~NsYlI~-----~~~~vLIDtg~~--~~----~~~~---~~~l~~~~~~~~I~~Ii~TH~H~DH~Gg~~~l~~~~p~~~v  101 (398)
T 1ycg_A           36 YNAYLIV-----DDKTALVDTVYE--PF----KEEL---IAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHV  101 (398)
T ss_dssp             ECCEEEC-----SSSCEEECCCCG--GG----HHHH---HHHHHHHCSSCCCSEEEESCCSHHHHTTHHHHHHHCTTCEE
T ss_pred             EEEEEEE-----CCCEEEEECCCH--HH----HHHH---HHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEE
T ss_conf             9999997-----299999949984--67----9999---99999755976865999278986777059999986899989


Q ss_pred             ECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECC--CCCCCCCEEEEEECCCEEEECCCCEECCCCC
Q ss_conf             92999999999999854886556225517555577634899998556--7777653567987681799833402467766
Q gi|254780869|r   96 YASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVN--HSIPETMALVIRSPVGNIVHTGDWKLDDDAI  173 (559)
Q Consensus        96 Y~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~--Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~  173 (559)
                      |+++.+..++....    .........+..++++++|+.+++++++.  | .|++..+  ..+..+++||||.-..+...
T Consensus       102 ~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~lg~~~~~~~~~p~~h-~~~~~~~--~~~~~~iLfsgD~~~~~~~~  174 (398)
T 1ycg_A          102 LCTQRAFDSLKAHY----SHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLH-WPDSMFT--YVPEEALLLPNDAFGQHIAT  174 (398)
T ss_dssp             EECHHHHHHHHHHT----CSCCCEEEECCTTCEEECSSCEEEEEECTTSS-STTCEEE--EETTTTEEEEETTTCCCCCC
T ss_pred             EECHHHHHHHHHHC----CCCCCCCEEECCCCEEEECCCEEEEEECCCCC-CCCCEEE--EECCCCEEECCCCCCCCCCC
T ss_conf             96899998776402----46775506825998898168159999789888-8885799--98898889918846767788


Q ss_pred             CCCC---CCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCEEEE----ECHHHHHHHHHHHH
Q ss_conf             5423---898899860878829999635645788877778799999999986-279839999----41477899999999
Q gi|254780869|r  174 LGDV---TDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMK-NAKGCVLVT----TFSSSVSRIRSIID  245 (559)
Q Consensus       174 ~g~~---~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~-~~~grViv~----~fasni~Ri~~i~~  245 (559)
                      .+..   .+...+..           +..+...+-..++...+.+.++++-+ +.+=+.|++    ++-.++.|+...++
T Consensus       175 ~~~~~d~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~~l~~L~l~i~~I~PgHGpv~~~~~~~~i~~y~  243 (398)
T 1ycg_A          175 SVRFDDQVDAGLIMD-----------EAAKYYANILMPFSNLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYA  243 (398)
T ss_dssp             SCCBGGGSCHHHHHH-----------HHHHHHHHHTGGGHHHHHHHHHHHHHTTCCCSEEEESSSCBBCSCHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHH-----------HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHCCHHHHHHHHH
T ss_conf             653031122145689-----------875312100368789999999999865998249970898632069999999999


Q ss_pred             -HHH-HHCCEEEEE-----CHH--HHH-HHHHHHHCCC----CCCCCCCCCHHH-HCCCCCCCEEEEEECCCCCH-----
Q ss_conf             -998-718869984-----486--999-9998874287----677654226566-22388020899996696326-----
Q gi|254780869|r  246 -IAE-QIGRKIVLL-----GSS--LKR-VVSVAIDVGI----IKKDQLFLSDES-FGLYPREQLIVIATGSQGEP-----  305 (559)
Q Consensus       246 -~a~-~~~R~v~i~-----Grs--~~~-~~~~a~~~g~----l~~~~~~i~~~~-~~~~p~~~~~ii~TGsqge~-----  305 (559)
                       -+. +..+++.+.     |++  |.+ +.+.+.+.|.    ++..  ..+.++ ...+.+-+.+++.|.+++..     
T Consensus       244 ~w~~~~~k~~i~ivy~S~~GnT~~~a~~ia~~~~~~g~~v~~~~~~--~~~~~~~~~~~~~~d~iilgspt~~g~~~~~~  321 (398)
T 1ycg_A          244 RWAEGQGKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLS--VSDRNDVIKEILDARAVLVGSPTINNDILPVV  321 (398)
T ss_dssp             HHHHTCCCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGG--GSCHHHHHHHHHHCSEEEEECCCBTTBCCGGG
T ss_pred             HHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCHHHHHHHHHHCCEEEEECCCCCCCCCHHH
T ss_conf             9973166773499999786749999999998875279679999877--78979999999867979997276288661999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHC
Q ss_conf             889885202777653026896699996158861778999997651031134303566641315788978999999754
Q gi|254780869|r  306 RSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWI  383 (559)
Q Consensus       306 ~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~i  383 (559)
                      ...+.++...     .++..-..+|+|-.  |++.++..+.+.|...|++++..   ..++++|||+.+|++++.++-
T Consensus       322 ~~fl~~l~~~-----~~~~k~~~~fgs~g--~~~~a~~~~~~~l~~~g~~~v~~---~~~~~~~~P~~~~l~~~~~~g  389 (398)
T 1ycg_A          322 SPLLDDLVGL-----RPKNKVGLAFGAYG--WGGGAQKILEERLKAAKIELIAE---PGPTVQWVPRGEDLQRCYELG  389 (398)
T ss_dssp             HHHHHHHHHH-----CCSSCEEEEEEEES--SSCCHHHHHHHHHHHTTCEESCS---SCCEEESSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHCC-----CCCCCEEEEEEEEC--CCCHHHHHHHHHHHHCCCEEEEC---CEEEEECCCCHHHHHHHHHHH
T ss_conf             9999998604-----65799899999308--78679999999999779989617---718994579989999999999


No 11 
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A*
Probab=99.75  E-value=7.1e-17  Score=138.85  Aligned_cols=326  Identities=16%  Similarity=0.182  Sum_probs=181.9

Q ss_pred             EEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHH-----HHHCCCEEEEECCCCCCCCCHHHHHHHC-CC
Q ss_conf             06999951777864899977676788876750287079579876-----6412468996054301216078889862-99
Q gi|254780869|r   20 NMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMK-----ERKNLMAIFITHAHEDHYGALHDLWSFL-HV   93 (559)
Q Consensus        20 N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~-----~~~~i~~i~iTH~H~DHiGalp~l~~~~-~~   93 (559)
                      |||++.    .++..+|||+|..-..+.      +   ++.|++     ..++|+.|++||.|.||+|++++++..+ ++
T Consensus        36 NsYlI~----~~~~~~LIDtG~~~~~~~------~---~~~l~~~~~~i~~~~I~~Ii~TH~H~DH~ggl~~~~~~~~~~  102 (404)
T 2ohh_A           36 NAYLVC----GDEGVALIDNSYPGTFDE------L---MARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRRFPEA  102 (404)
T ss_dssp             CCEEEE----CSSCEEEECCCCTTCHHH------H---HHHHHHHHHHHTCCCCCEEECSCCSHHHHTTHHHHHHHSTTC
T ss_pred             EEEEEE----CCCEEEEEECCCCCCHHH------H---HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf             999997----198259991989843899------9---999999986479656869998999987541199999877998


Q ss_pred             CEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECC-CCCCCCCEEEEEECCCEEEECCCCEECCCC
Q ss_conf             7792999999999999854886556225517555577634899998556-777765356798768179983340246776
Q gi|254780869|r   94 PVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVN-HSIPETMALVIRSPVGNIVHTGDWKLDDDA  172 (559)
Q Consensus        94 pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~-Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p  172 (559)
                      ++|+++.+...+.....   .........++.++++++|+.+++++++. +..||++.+.+  +..+++||||+-..+..
T Consensus       103 ~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~g~~l~lg~~~l~~i~~p~gH~~~~~~~~~--~~~~iLfsgD~~g~~~~  177 (404)
T 2ohh_A          103 PIYCTEVAVKGLLKHYP---SLREAEFMTVKTGDVLDLGGKTLTFLETPLLHWPDSMFTLL--DEDGILFSNDAFGQHLC  177 (404)
T ss_dssp             CEEECHHHHHHHHHHCG---GGGGSCEEECCTTCEEECSSCEEEEEECTTSSSTTCEEEEE--ETTTEEECTTTTCCCCC
T ss_pred             EEEECHHHHHHHHHHCC---CCCCHHHEECCCCCEEECCCCEEEEEECCCCCCCCCEEEEE--CCCCEEEECCCCCCCCC
T ss_conf             89967888877775267---77623313225798897376158999526889899689998--89999997976666778


Q ss_pred             CCCCCC---CHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH---HCCCCEEEEECHHHHHHHHHHHH-
Q ss_conf             654238---98899860878829999635645788877778799999999986---27983999941477899999999-
Q gi|254780869|r  173 ILGDVT---DKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMK---NAKGCVLVTTFSSSVSRIRSIID-  245 (559)
Q Consensus       173 ~~g~~~---d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~---~~~grViv~~fasni~Ri~~i~~-  245 (559)
                      ..+...   +...+..           +..+....-..++...+.+.++++-+   ..+-++|++.-..-+.+.+++++ 
T Consensus       178 ~~~~~~~~~~~~~~~~-----------~~~~yy~~i~~p~~~~~~~~l~~l~~L~~~~~i~~I~PgHGpv~~~~~~~i~~  246 (404)
T 2ohh_A          178 CPQRLDREIPEYILMD-----------AARKFYANLITPLSKLVLKKFDEVKELGLLERIQMIAPSHGQIWTDPMKIIEA  246 (404)
T ss_dssp             CSCCBGGGSCHHHHHH-----------HHHHHHHHHTGGGHHHHHHHHHHHHHTTCGGGCSEEECSSSCBBSSHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHH-----------HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHCCHHHHHHH
T ss_conf             8641014456302377-----------77543645026768999999999986646678639962770275698999999


Q ss_pred             ----HHHHHCCEEEEE-----C--HHHHHH-HHHHHHCCCCCC-CCCC-CCH-HHHCCCCCCCEEEEEECCC-CC----H
Q ss_conf             ----998718869984-----4--869999-998874287677-6542-265-6622388020899996696-32----6
Q gi|254780869|r  246 ----IAEQIGRKIVLL-----G--SSLKRV-VSVAIDVGIIKK-DQLF-LSD-ESFGLYPREQLIVIATGSQ-GE----P  305 (559)
Q Consensus       246 ----~a~~~~R~v~i~-----G--rs~~~~-~~~a~~~g~l~~-~~~~-i~~-~~~~~~p~~~~~ii~TGsq-ge----~  305 (559)
                          +..+..++|.+.     |  +.|.+. .+.+.+.|.--. .... .+. .....+.+-+.+++.|-+. |+    -
T Consensus       247 y~~~~~~~~~~kv~Ivy~S~~GnT~~~A~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~ii~Gspt~~~~~~~~~  326 (404)
T 2ohh_A          247 YTGWATGMVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSV  326 (404)
T ss_dssp             HHHHHTTCCCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEETTEECTHH
T ss_pred             HHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCCCCCCCCHHH
T ss_conf             99861055576262898558657999999999988757981899992588978889999857955996365178468899


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHC
Q ss_conf             889885202777653026896699996158861778999997651031134303566641315788978999999754
Q gi|254780869|r  306 RSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWI  383 (559)
Q Consensus       306 ~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~i  383 (559)
                      ..-+.++..-.+..  +.....++|+|-.  |++.++..+.+.|...|++++..     ..+.|+|+.+|++.+.++-
T Consensus       327 ~~fl~~l~~~~~~~--~~gK~~~~Fgs~g--~~g~a~~~~~~~l~~~G~~vv~~-----~~~~~~P~~e~l~~~~~~g  395 (404)
T 2ohh_A          327 GDLLMYLRGLKFNR--TLTRKALVFGSMG--GNGGATGTMKELLAEAGFDVACE-----EEVYYVPTGDELDACFEAG  395 (404)
T ss_dssp             HHHHHHHHHHCGGG--TCCEEEEEEEEES--SSCCHHHHHHHHHHHTTEEEEEE-----EEEESSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCC--CCCCEEEEEECCC--CCHHHHHHHHHHHHHCCCEEECC-----EEEEECCCHHHHHHHHHHH
T ss_conf             99999986576456--5798699999048--87699999999999779989456-----7895079989999999999


No 12 
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7
Probab=99.72  E-value=6.6e-16  Score=131.86  Aligned_cols=136  Identities=19%  Similarity=0.276  Sum_probs=95.0

Q ss_pred             EEEEEECCCC-CCCCC--EEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHH---HHHCCCEEEEECCCC
Q ss_conf             3999940686-83466--06999951777864899977676788876750287079579876---641246899605430
Q gi|254780869|r    5 ELVFLPLGGV-GEIGM--NMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMK---ERKNLMAIFITHAHE   78 (559)
Q Consensus         5 ~i~~~~lGG~-~eiG~--N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~---~~~~i~~i~iTH~H~   78 (559)
                      +|.|+--||. --.++  +|+++++....++..+|||||-++.              ..|.+   ...++++|||||.|.
T Consensus         3 ~l~~LGtg~~~p~~~r~~s~~lv~~~~~~~~~~iL~DcG~g~~--------------~~l~~~~~~~~~i~~IfiTH~H~   68 (306)
T 2cbn_A            3 NLIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQ--------------HQLLHTAFNPGKLDKIFISHLHG   68 (306)
T ss_dssp             EEEEEECBSSSCCSSCCBCEEEEECCCSSCCCEEEECCCTTHH--------------HHHHTSCCCTTTEEEEECSCCCH
T ss_pred             EEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCHHHH--------------HHHHHHCCCHHHCCEEEEECCCH
T ss_conf             8999776899899999648899997268899489999975899--------------99998189966775899834668


Q ss_pred             CCCCCHHHHHHHC-------CCCEECCHHHHHHHHHHHHHCCCCCC--CCEEEECCCCEEEECCEEEEEEECCCCCCCCC
Q ss_conf             1216078889862-------99779299999999999985488655--62255175555776348999985567777653
Q gi|254780869|r   79 DHYGALHDLWSFL-------HVPVYASPFAIGLLEAKRVYERVSKK--IPCISFQAGDKVDVGAFSIESVRVNHSIPETM  149 (559)
Q Consensus        79 DHiGalp~l~~~~-------~~pIY~s~~t~~li~~~~~~~~~~~~--~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~  149 (559)
                      ||+++||.++...       .++||+++.+..+++..+........  ..+.+......++.+.+.+++++..|+++ +.
T Consensus        69 DH~~Gl~~ll~~~~~~~~~~~l~i~gP~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~  147 (306)
T 2cbn_A           69 DHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLE-CY  147 (306)
T ss_dssp             HHHTTHHHHHHHHHHTTCCSCEEEEESTTHHHHHHHHHHHTTCCCSSCEEEEECCSEEEEECSSEEEEEEECBSSSC-CE
T ss_pred             HHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCEEEEEEECCCCCC-CC
T ss_conf             98078401331012037898765668677899999998653244444412332135411203752565430355544-32


Q ss_pred             EEEEEE
Q ss_conf             567987
Q gi|254780869|r  150 ALVIRS  155 (559)
Q Consensus       150 ~~~I~t  155 (559)
                      ++.+..
T Consensus       148 ~~~~~~  153 (306)
T 2cbn_A          148 GYRIEE  153 (306)
T ss_dssp             EEEEEE
T ss_pred             CCEEEE
T ss_conf             201220


No 13 
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.60  E-value=2.4e-13  Score=113.43  Aligned_cols=127  Identities=15%  Similarity=0.146  Sum_probs=92.0

Q ss_pred             EEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH--HHCCCEEEEECCCCCCCCCHHHHHHHC-CCCEE
Q ss_conf             069999517778648999776767888767502870795798766--412468996054301216078889862-99779
Q gi|254780869|r   20 NMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHEDHYGALHDLWSFL-HVPVY   96 (559)
Q Consensus        20 N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~--~~~i~~i~iTH~H~DHiGalp~l~~~~-~~pIY   96 (559)
                      |||++.     +++.+|||+|..  ..    .+.+   .+.|.+.  .++|+.|++||.|.||+|+++.++..+ +++||
T Consensus        42 NsYLI~-----~e~~vLIDtg~~--~~----~~~~---l~~i~~~i~~~~I~~II~TH~H~DH~ggl~~l~~~~p~a~i~  107 (414)
T 2q9u_A           42 NSYFID-----DECPTVIDSVKY--PF----AEEW---LSRIAACCPLDKIKYVVMNHAEGDHASSLKDHYHKFTNATFV  107 (414)
T ss_dssp             CCEEEC-----SSSCEEECCCCG--GG----HHHH---HHHHHHHSCGGGCCEEECSCCSGGGTTTHHHHGGGSTTCEEE
T ss_pred             EEEEEE-----CCCEEEEECCCH--HH----HHHH---HHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             999996-----698899909980--16----9999---999997569877998996909664760299999878898799


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECC--CCCCCCCEEEEEECCCEEEECCCCE
Q ss_conf             2999999999999854886556225517555577634899998556--7777653567987681799833402
Q gi|254780869|r   97 ASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVN--HSIPETMALVIRSPVGNIVHTGDWK  167 (559)
Q Consensus        97 ~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~--Hsip~a~~~~I~t~~g~i~ytGDfk  167 (559)
                      +++.+..+++....    ........++.++.+++|+.+++++++.  | -||+.  ++..+..+++||||.-
T Consensus       108 ~~~~~~~~~~~~~~----~~~~~~~~~~~g~~l~lg~~~l~~i~~p~gH-~~~~~--~~y~~~~~iLfsGD~~  173 (414)
T 2q9u_A          108 CTKKCQEHLKILYG----MEKATWLIVDDKYTLKIGKRTLKFIPVPLLH-WPDST--FTYCPEDKILFSNDGF  173 (414)
T ss_dssp             ECHHHHHHHHHHHC----CTTCCEEECCTTCCEECSSCEEEEEECTTSS-STTCE--EEEETTTTEEEEETTT
T ss_pred             ECHHHHHHHHHHCC----CCCCCEEEECCCCEEEECCEEEEEECCCCCC-CCCCE--EEEECCCCCEEECCCC
T ss_conf             75899988887438----9865258715898897565589997036898-68978--9999898968945745


No 14 
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3
Probab=99.55  E-value=7e-12  Score=102.91  Aligned_cols=124  Identities=23%  Similarity=0.233  Sum_probs=91.1

Q ss_pred             EEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH--HHCCCEEEEECCCCCCCCCHHHHHHHC--CCCE
Q ss_conf             069999517778648999776767888767502870795798766--412468996054301216078889862--9977
Q gi|254780869|r   20 NMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHEDHYGALHDLWSFL--HVPV   95 (559)
Q Consensus        20 N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~--~~~i~~i~iTH~H~DHiGalp~l~~~~--~~pI   95 (559)
                      |+|++.    .++..+|||+|.  +..    .+.+   ++.|++.  .++|+.|++||.|.||+|+++.+++++  +++|
T Consensus        53 NsYLI~----~~~~~vLIDtg~--~~~----~~~~---l~~l~~~i~~~~I~yIi~TH~H~DH~Ggl~~l~~~~~~~~~i  119 (410)
T 1vme_A           53 NAYLVK----LNGANVLIDGWK--GNY----AKEF---IDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTIGHDVEI  119 (410)
T ss_dssp             EEEEEE----CSSCEEEECCCC--GGG----HHHH---HHHHHHHSCGGGCCEEECSCCCHHHHTTHHHHHHHHCSCCEE
T ss_pred             EEEEEE----ECCEEEEEECCC--HHH----HHHH---HHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             999999----799579991997--567----9999---999997579767689994939653775499999970999899


Q ss_pred             ECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECC-CCCCCCCEEEEEECCCEEEECCCC
Q ss_conf             92999999999999854886556225517555577634899998556-777765356798768179983340
Q gi|254780869|r   96 YASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVN-HSIPETMALVIRSPVGNIVHTGDW  166 (559)
Q Consensus        96 Y~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~-Hsip~a~~~~I~t~~g~i~ytGDf  166 (559)
                      |+++.+..++.....      ......++.++.+++|+.+++++++. |.-|+++.+.  .  ..++||||.
T Consensus       120 ~~~~~~~~~~~~~~~------~~~~~~v~~g~~l~lG~~~l~~i~~P~~H~p~~~~~y--~--~~iLFsgD~  181 (410)
T 1vme_A          120 IASNFGKRLLEGFYG------IKDVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVTY--L--DGILFSCDV  181 (410)
T ss_dssp             EECHHHHHHHHHHHC------CCCCEECCTTCEEEETTEEEEEEECTTSSSTTCEEEE--E--TTEEEEETT
T ss_pred             EECHHHHHHHHHCCC------CCCCEEECCCCEEEECCEEEEEEECCCCCCCCCCCEE--E--CCEEEECCC
T ss_conf             978888642010167------6531683579999866726999978998889971021--2--898998863


No 15 
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida KT2440} PDB: 1xto_A
Probab=99.54  E-value=8.8e-14  Score=116.57  Aligned_cols=157  Identities=11%  Similarity=0.119  Sum_probs=100.0

Q ss_pred             EEEEEEECCCCCCEEEEEECCCCCCC--------CCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC
Q ss_conf             06999951777864899977676788--------8767502870795798766412468996054301216078889862
Q gi|254780869|r   20 NMALYGYGSPSSRKWIMIDCGVSFPK--------DDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFL   91 (559)
Q Consensus        20 N~~~~~~~~~~~~~~iiiD~G~~fp~--------~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~   91 (559)
                      .|.++.   ...+.++|||||-.+..        ....|++            ..+|++|||||.|.||+++||.|.+..
T Consensus        42 ssi~l~---~~g~~~iLiD~G~~~~~ql~~~~~~~~~~~i~------------~~~Id~I~lTH~H~DH~~GL~~L~~~~  106 (321)
T 3jxp_A           42 SSIALS---DDGVHWILCNASPDIRAQLQAFAPMQPARALR------------DTGINAIVLLDSQIDHTTGLLSLREGC  106 (321)
T ss_dssp             CEEEEE---SSSSSEEEECCCTTHHHHHHTCGGGCCCSSSS------------CCSEEEEECSCCCHHHHGGGGGGGGGC
T ss_pred             EEEEEE---ECCCEEEEEECCCCHHHHHHHHHHHCCCCCCC------------CCCCCEEEEECCCCCHHHHHHHHHHHC
T ss_conf             479999---79985999979975999999976548333467------------887558997077612476799996122


Q ss_pred             CCCEECCHHHHHHHHHHHH----HCCCCCCCCEEEECCCCEEEE---CCEEEEEEECCCCCC------------CCCEEE
Q ss_conf             9977929999999999998----548865562255175555776---348999985567777------------653567
Q gi|254780869|r   92 HVPVYASPFAIGLLEAKRV----YERVSKKIPCISFQAGDKVDV---GAFSIESVRVNHSIP------------ETMALV  152 (559)
Q Consensus        92 ~~pIY~s~~t~~li~~~~~----~~~~~~~~~~~~i~~~~~~~~---g~~~v~~~~~~Hsip------------~a~~~~  152 (559)
                      ..+||+++.+...+...+.    ............+...+...+   .+++++++++.|..+            +++||.
T Consensus       107 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~g~~  186 (321)
T 3jxp_A          107 PHQVWCTDMVHQDLTTGFPLFNMLSHWNGGLQWNRIELEGSFVIDACPNLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLM  186 (321)
T ss_dssp             CEEEEECHHHHHHTTTTSCHHHHHTTTTTCEEEEECCSSSCEECTTSTTEEEEEEEECCCCCTTCTTTTSCCTTSEEEEE
T ss_pred             EEEEEECHHHHHHHHHCCCHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCEEEEE
T ss_conf             02376066674444415202110133467641135504666210246983686665335784133456247777336999


Q ss_pred             EEEC--CCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf             9876--8179983340246776654238988998608788299996356457
Q gi|254780869|r  153 IRSP--VGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAM  202 (559)
Q Consensus       153 I~t~--~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~  202 (559)
                      |+.+  +++++|++|-.-       ...++..+.+    ++|+|+.|+|..+
T Consensus       187 i~~~~~g~~~~y~~Dt~~-------~~~~~~~~~~----~adlli~e~~~~~  227 (321)
T 3jxp_A          187 VEDTRTGGKLFYAPGLGQ-------VDEKLLAMMH----GADCLLVDGTLWE  227 (321)
T ss_dssp             EEETTTCCEEEEESSCCC-------CCHHHHHHHH----HCSEEEEECCCSS
T ss_pred             EEECCCCCEEEEECCCCC-------CHHHHHHHHC----CCCEEEEEEECCC
T ss_conf             985047867999788863-------0167775421----5767999850257


No 16 
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii}
Probab=99.54  E-value=4.4e-13  Score=111.54  Aligned_cols=144  Identities=23%  Similarity=0.319  Sum_probs=99.8

Q ss_pred             CCCCEEEEEECCCCC-CCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCC
Q ss_conf             988639999406868-3466069999517778648999776767888767502870795798766412468996054301
Q gi|254780869|r    1 MKNEELVFLPLGGVG-EIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHED   79 (559)
Q Consensus         1 m~~~~i~~~~lGG~~-eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~D   79 (559)
                      |.-..+..+|+|=.+ --..|+|++.    .++..+|||+|.......          +    ...++|++||+||+|.|
T Consensus         1 ~~~~~~~~i~~~p~~~~~~~n~~li~----~~~~~~lID~G~~~~~~~----------~----~~~~~i~~VilTH~H~D   62 (261)
T 3adr_A            1 MPCRGLHSIPAGPVEFPEIATVYVMC----GEKLTVMIDAGVSNSIAD----------F----SFLDKLDYIVLTHLHID   62 (261)
T ss_dssp             -CCCEEEEEECSCTTCGGGSEEEEEE----CSSCEEEECCCCTTCCCC----------C----TTCSCCCEEECSCCSGG
T ss_pred             CCCCCEEEEECCCCCCCCEEEEEEEE----ECCEEEEECCCCCHHHHH----------H----HCCCCCCEEEECCCCCC
T ss_conf             98785489207986768768999999----499589987999829998----------6----24067899995989864


Q ss_pred             CCCCHHHHHHHCCCCEECCHHHHHHHHHH-----H------------H-HCCCC---CCCCEEEECCCCEEEECCEEEEE
Q ss_conf             21607888986299779299999999999-----9------------8-54886---55622551755557763489999
Q gi|254780869|r   80 HYGALHDLWSFLHVPVYASPFAIGLLEAK-----R------------V-YERVS---KKIPCISFQAGDKVDVGAFSIES  138 (559)
Q Consensus        80 HiGalp~l~~~~~~pIY~s~~t~~li~~~-----~------------~-~~~~~---~~~~~~~i~~~~~~~~g~~~v~~  138 (559)
                      |+|+++++.+.+++|||+++.+...+...     +            . .....   .......+..++.+++|+.++++
T Consensus        63 H~gg~~~l~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lg~~~~~~  142 (261)
T 3adr_A           63 HIGLLPELLQVYKAKVLVKSGFKKYLTSEDGLKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNEEFDLGGYRMRL  142 (261)
T ss_dssp             GTTTHHHHHHHSCCEEEEETTCTHHHHSHHHHHHHHHHHHHHHTHHHHHHCCCCSCCCGGGEEEECSCCEEECSSSEEEE
T ss_pred             CCCCHHHHHHCCCCCEEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEECCCEEEE
T ss_conf             42876676543567433378799986250124567788887640000101466555565524883363389506610047


Q ss_pred             EEC-CCCCCCCCEEEEEECCCEEEECCCCE
Q ss_conf             855-67777653567987681799833402
Q gi|254780869|r  139 VRV-NHSIPETMALVIRSPVGNIVHTGDWK  167 (559)
Q Consensus       139 ~~~-~Hsip~a~~~~I~t~~g~i~ytGDfk  167 (559)
                      +++ +| .|+++++.+    ..++||||..
T Consensus       143 ~~~pGH-t~~~~~~~~----~~vlftGD~~  167 (261)
T 3adr_A          143 IYTPGH-ARHHMSVLV----DDFLFTGDSA  167 (261)
T ss_dssp             EECTTS-CTTCEEEEE----TTEEEEETSS
T ss_pred             EECCCC-CCCCEEEEE----CCEEEECCCC
T ss_conf             757988-887689998----9999989846


No 17 
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}
Probab=99.51  E-value=2.4e-13  Score=113.47  Aligned_cols=147  Identities=20%  Similarity=0.280  Sum_probs=107.2

Q ss_pred             EEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCH
Q ss_conf             39999406868346606999951777864899977676788876750287079579876641246899605430121607
Q gi|254780869|r    5 ELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGAL   84 (559)
Q Consensus         5 ~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGal   84 (559)
                      +++++|.|-.+   .|||++.  .+..++.+|||+|..        .+.+   .++|++...++++||+||+|.||+|++
T Consensus         2 ~~~~i~~~~~~---~N~yli~--~~~~~~~ilID~G~~--------~~~i---~~~l~~~~~~i~~Vi~TH~H~DH~gg~   65 (210)
T 2xf4_A            2 NYRIIPVTAFS---QNCSLIW--CEQTRLAALVDPGGD--------AEKI---KQEVDASGVTLMQILLTHGHLDHVGAA   65 (210)
T ss_dssp             EEEEEEETTTT---EEEEEEE--CTTTCEEEEECCCSC--------HHHH---HHHHHHHTCEEEEEECSCSCHHHHTTH
T ss_pred             CEEEEECCCHH---CEEEEEE--ECCCCEEEEEECCCC--------HHHH---HHHHHHCCCCEEEEEECCCCCCCCCCH
T ss_conf             43999878446---6899999--899998999979808--------9999---999997799348999787998553518


Q ss_pred             HHHHHHCCCCEECCHHHHHHHHHH----HHHCCC---CCCCCEEEECCCCEEEECCEEEEEEECC-CCCCCCCEEEEEEC
Q ss_conf             888986299779299999999999----985488---6556225517555577634899998556-77776535679876
Q gi|254780869|r   85 HDLWSFLHVPVYASPFAIGLLEAK----RVYERV---SKKIPCISFQAGDKVDVGAFSIESVRVN-HSIPETMALVIRSP  156 (559)
Q Consensus        85 p~l~~~~~~pIY~s~~t~~li~~~----~~~~~~---~~~~~~~~i~~~~~~~~g~~~v~~~~~~-Hsip~a~~~~I~t~  156 (559)
                      .++.+.+++|+|++......+...    ......   ........++.++.+++|+.+++++++. | .||+.++.+  +
T Consensus        66 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~g~~~~~~i~tPGH-T~g~~~~~~--~  142 (210)
T 2xf4_A           66 SELAQHYGVPVIGPEKEDEFWLQGLPAQSRMFGLDECQPLTPDRWLNDGDRVSVGNVTLQVLHCPGH-TPGHVVFFD--E  142 (210)
T ss_dssp             HHHHHHHTCCEECCCGGGHHHHHTHHHHHHHTTCCCCCCCCCSBCCCTTCEEEETTEEEEEEECCSS-STTCEEEEE--T
T ss_pred             HHHHHHHCCCEEEECCHHHHHHCCCHHHHHHCCCCCCCCCCCCEEECCCCCCEECCEEEEEEEECCC-CCCCEEEEE--C
T ss_conf             9987750984785010456652042123211033345567785893168742369989999992699-998689997--7


Q ss_pred             CCEEEECCCCEECC
Q ss_conf             81799833402467
Q gi|254780869|r  157 VGNIVHTGDWKLDD  170 (559)
Q Consensus       157 ~g~i~ytGDfk~d~  170 (559)
                      +.++++|||+-++.
T Consensus       143 ~~~~l~~GD~~~~~  156 (210)
T 2xf4_A          143 QSQLLISGDVIFKG  156 (210)
T ss_dssp             TTTEEEEETSEETT
T ss_pred             CCCCCCCCCEEECC
T ss_conf             88842148886379


No 18 
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Probab=99.48  E-value=1.3e-12  Score=108.11  Aligned_cols=143  Identities=16%  Similarity=0.164  Sum_probs=97.3

Q ss_pred             CCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH---HHCCCEEEEECCCCCCCCCHHHHHHHC
Q ss_conf             83466069999517778648999776767888767502870795798766---412468996054301216078889862
Q gi|254780869|r   15 GEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE---RKNLMAIFITHAHEDHYGALHDLWSFL   91 (559)
Q Consensus        15 ~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~---~~~i~~i~iTH~H~DHiGalp~l~~~~   91 (559)
                      |..+-|||++..    .+..+|||||..  ...    +.+   ...|++.   ..+|++||+||.|.||+|+++++.+.+
T Consensus        34 g~~~~~~~li~~----~~g~iLID~G~~--~~~----~~~---~~~l~~~g~~~~~I~~Il~TH~H~DH~gg~~~l~~~~  100 (269)
T 1sml_A           34 GTEDLTALLVQT----PDGAVLLDGGMP--QMA----SHL---LDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRRT  100 (269)
T ss_dssp             SBTTBCCEEEEE----TTEEEEECCBSG--GGH----HHH---HHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHHS
T ss_pred             CCCCEEEEEEEE----CCEEEEECCCCC--CHH----HHH---HHHHHHCCCCCHHCCEEEECCCCCCCCCCHHHHHHHH
T ss_conf             999928999998----997699848995--129----999---9999974998032549997999835415099999986


Q ss_pred             CCCEECCHHHHHHHHHHHHHCCC-------CCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEE-ECC---CEE
Q ss_conf             99779299999999999985488-------6556225517555577634899998556777765356798-768---179
Q gi|254780869|r   92 HVPVYASPFAIGLLEAKRVYERV-------SKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIR-SPV---GNI  160 (559)
Q Consensus        92 ~~pIY~s~~t~~li~~~~~~~~~-------~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~-t~~---g~i  160 (559)
                      ++|||+++.+...+.........       .+......+..++.+++|+.+++++.+....||..++.+. +..   +.+
T Consensus       101 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~g~~l~lg~~~~~~~~~PgH~~g~~~~~~~~~~~~~~~~v  180 (269)
T 1sml_A          101 GAKVAANAESAVLLARGGSDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRI  180 (269)
T ss_dssp             SCEEEECHHHHHHHHTTTCSBTTTBTSSCCCCCCCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEETTEEEEE
T ss_pred             CCCEEECHHHHHHHHHCCHHHHHHCCCCCCCCCCCCEECCCCCEEECCCCEEEEEECCCCCCCCEEEEEECCCCCCCEEE
T ss_conf             99476378898877501112233123567887425256379988850992589996788897888999963457852179


Q ss_pred             EECCCCEECC
Q ss_conf             9833402467
Q gi|254780869|r  161 VHTGDWKLDD  170 (559)
Q Consensus       161 ~ytGDfk~d~  170 (559)
                      ++.+|+....
T Consensus       181 ~~~~~~~~~~  190 (269)
T 1sml_A          181 AYADSLSAPG  190 (269)
T ss_dssp             EECCCCCCTT
T ss_pred             EECCCCCCCC
T ss_conf             9838867899


No 19 
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=99.45  E-value=6.9e-13  Score=110.18  Aligned_cols=137  Identities=18%  Similarity=0.299  Sum_probs=98.9

Q ss_pred             CCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHH-HCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf             0686834660699995177786489997767678887675028707957987664-124689960543012160788898
Q gi|254780869|r   11 LGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER-KNLMAIFITHAHEDHYGALHDLWS   89 (559)
Q Consensus        11 lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~-~~i~~i~iTH~H~DHiGalp~l~~   89 (559)
                      ..|.+.++.|++++.    .++.++|||+|.......     .+   .+++++.. .+|++|++||.|.||+|+++++..
T Consensus        29 ~~~~~~~~~N~~li~----~~~~~iliDt~~~~~~~~-----~l---~~~i~~~~~~pi~~vi~TH~H~DH~gg~~~~~~   96 (232)
T 1a7t_A           29 IEGWGMVPSNGMIVI----NNHQAALLDTPINDAQTE-----ML---VNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQR   96 (232)
T ss_dssp             ETTTEEEEEEEEEEE----ETTEEEEESCCSSHHHHH-----HH---HHHHHHHHCCEEEEEECSSSSHHHHTTHHHHHH
T ss_pred             CCCCCEECCEEEEEE----ECCEEEEEECCCCHHHHH-----HH---HHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHH
T ss_conf             888612275699999----899999996989989999-----99---999987139973899979988522233999985


Q ss_pred             HCCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEEC--CCCCCCCCEEEEEECCCEEEECCCCE
Q ss_conf             6299779299999999999985488655622551755557763489999855--67777653567987681799833402
Q gi|254780869|r   90 FLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV--NHSIPETMALVIRSPVGNIVHTGDWK  167 (559)
Q Consensus        90 ~~~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~--~Hsip~a~~~~I~t~~g~i~ytGDfk  167 (559)
                      . ++++|+++.+..++....      .......++.+..+++|+.+++++..  +|+ ||+..  +..|+.+++||||.-
T Consensus        97 ~-~~~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~v~~~~~~pGHt-~g~~~--~~~~~~~vlf~GD~~  166 (232)
T 1a7t_A           97 K-GVQSYANQMTIDLAKEKG------LPVPEHGFTDSLTVSLDGMPLQCYYLGGGHA-TDNIV--VWLPTENILFGGCML  166 (232)
T ss_dssp             T-TCEEEEEHHHHHHHHHHT------CCCCSEEESSEEEEEETTEEEEEECCCCSSS-TTCCE--EEETTTTEEEEETTS
T ss_pred             C-CCEEEEECCHHHHHHHCC------CCCCCEEECCCCEEEECCEEEEEEECCCCCC-CCCEE--EEECCCCEEEECCCC
T ss_conf             8-995998220255654325------6666054157619998999999984238999-87279--995899999988862


Q ss_pred             EC
Q ss_conf             46
Q gi|254780869|r  168 LD  169 (559)
Q Consensus       168 ~d  169 (559)
                      +.
T Consensus       167 ~~  168 (232)
T 1a7t_A          167 KD  168 (232)
T ss_dssp             CC
T ss_pred             CC
T ss_conf             78


No 20 
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural genomics, PSI-2; 1.80A {Vibrio cholerae o1 biovar eltor str}
Probab=99.45  E-value=1.1e-10  Score=94.28  Aligned_cols=119  Identities=18%  Similarity=0.227  Sum_probs=85.9

Q ss_pred             HCCCEEEEECCCCCCCCC--HHHHHHHC--CCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEEC
Q ss_conf             124689960543012160--78889862--99779299999999999985488655622551755557763489999855
Q gi|254780869|r   66 KNLMAIFITHAHEDHYGA--LHDLWSFL--HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV  141 (559)
Q Consensus        66 ~~i~~i~iTH~H~DHiGa--lp~l~~~~--~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~  141 (559)
                      .+|++|||||.|.||++.  +..++...  .+++|++..+...++.    .+. +..++.++++++.+++++++|+++++
T Consensus       132 ~~IDaVLITH~H~DHlD~~tl~~i~~~~~~~~~~igP~~~~~~l~~----~gv-p~~~ii~l~~gd~~~i~~i~I~~~pa  206 (379)
T 3bv6_A          132 KEIDAVLASHDHADHIDVNVAAAVLQNCGEHVKFIGPQACVDLWLG----WGV-PQERCIVAKVGDVLEIGDVKIRVLDS  206 (379)
T ss_dssp             CCCSEEECSBCSGGGCCHHHHHHHHHHSCTTCEEEECHHHHHHHHH----HTC-CGGGEEECCTTCEEEETTEEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHH----CCC-CHHHEEEECCCCEEEECCEEEEEEEE
T ss_conf             9988899899971117969999998507974599837899999987----599-66766881478728987779999943


Q ss_pred             CCCCC---------------------CCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCC
Q ss_conf             67777---------------------65356798768179983340246776654238988998608788299996356
Q gi|254780869|r  142 NHSIP---------------------ETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDST  199 (559)
Q Consensus       142 ~Hsip---------------------~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT  199 (559)
                      -|+..                     .++||+|++++++|+|+||-        +...++..+.+..  .+|+.++...
T Consensus       207 ~H~~~~~~~p~~~~~~~~~~~~~~~~~~~gylIe~~g~~Iy~sGDT--------~~~~~~~~ig~~~--~iDvall~iG  275 (379)
T 3bv6_A          207 FDRTALVTLPKGVSSYDKAILDGMDERAVNYLIETSGGSVYHSGDS--------HYSNYYAKHGNDY--QIDVALLSYG  275 (379)
T ss_dssp             CCHHHHTCCCTTSCSSCGGGGGCHHHHBEEEEEEETTEEEEECTTC--------CCCTTHHHHHHHS--CCSEEEEEBC
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCC--------CCCHHHHHHHHHC--CCCEEEECCC
T ss_conf             5365100147764446766666887653168897199389996799--------9647899988647--9989997888


No 21 
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline binding protein; PCE, hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Probab=99.44  E-value=2.3e-12  Score=106.46  Aligned_cols=230  Identities=16%  Similarity=0.194  Sum_probs=123.4

Q ss_pred             CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCC--CCCC---------------CCCEEEECCCHHHHHHH
Q ss_conf             886399994068683466069999517778648999776767--8887---------------67502870795798766
Q gi|254780869|r    2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSF--PKDD---------------LPGVDLVFPDITFIMKE   64 (559)
Q Consensus         2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~f--p~~~---------------~~gid~iiPd~~~l~~~   64 (559)
                      +..+|.|+..|- |.  .+|.+++.    ++..+|||||...  +...               .++-+.++   .||.+.
T Consensus         4 ~~~~I~fldVGq-G~--adaili~~----~g~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~L~~~   73 (547)
T 2bib_A            4 SGNKIHFINVQE-GG--SDAIILES----NGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVF---RRLKEL   73 (547)
T ss_dssp             SCEEEEEECBSS-SB--CCEEEEEE----TTEEEEEECCCCSCCCCSSSTTSCCCTTCCCCGGGCCHHHHH---HHHHHT
T ss_pred             CCCEEEEEECCC-CC--CEEEEEEE----CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---HHHHHC
T ss_conf             899999998899-99--88999999----999999989998656643222222222345543321267889---989875


Q ss_pred             H-HCCCEEEEECCCCCCCCCHHHHHHHCCC-CEECCHHHHH-------------HHHHHHHHCCCCCCCCE--EEECCCC
Q ss_conf             4-1246899605430121607888986299-7792999999-------------99999985488655622--5517555
Q gi|254780869|r   65 R-KNLMAIFITHAHEDHYGALHDLWSFLHV-PVYASPFAIG-------------LLEAKRVYERVSKKIPC--ISFQAGD  127 (559)
Q Consensus        65 ~-~~i~~i~iTH~H~DHiGalp~l~~~~~~-pIY~s~~t~~-------------li~~~~~~~~~~~~~~~--~~i~~~~  127 (559)
                      . ++|+++||||+|.||+|+++.|+..+.+ .||+++.+..             ..+..+.... ......  .....+.
T Consensus        74 gI~~ID~vIiTH~H~DHigGl~~ll~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~  152 (547)
T 2bib_A           74 SVQKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTAT-ETGVSVIQNITQGDA  152 (547)
T ss_dssp             TCCCBSCEECCCSCHHHHTTHHHHHHHSCBSEEECCCCCGGGBSCGGGCTTHHHHHHHHHHHHH-HTTCEEECSCCTTTT
T ss_pred             CCCCCCEEEECCCCHHHHCCHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCC
T ss_conf             9893799999999605769799999658787899799752222100123444799999999998-749974221257981


Q ss_pred             EEEECCEEEEEEECCCC-------------CCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEE
Q ss_conf             57763489999855677-------------77653567987681799833402467766542389889986087882999
Q gi|254780869|r  128 KVDVGAFSIESVRVNHS-------------IPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILAL  194 (559)
Q Consensus       128 ~~~~g~~~v~~~~~~Hs-------------ip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~L  194 (559)
                      .+.+++..++.+...+.             -..|+++.|+.++.++++|||.-        .....+.+.......+|+|
T Consensus       153 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~N~~Sivl~i~~~g~~~LftGD~~--------~~~e~~ll~~~~~~~~DvL  224 (547)
T 2bib_A          153 HFQFGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLD--------NVHGAEDKYGPLIGKVDLM  224 (547)
T ss_dssp             EEEETTEEEEEESCSCCBCTTSCBCCBSSGGGGCCEEEEEETTEEEEECTTCC--------STTSHHHHHHHHHCCCSEE
T ss_pred             EEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCC--------HHHHHHHHHCCCCCCEEEE
T ss_conf             79708816999367545544333445789887768999999999999997898--------0567998646888854699


Q ss_pred             EECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHH--HHHHHHHHHHHHCCEEEEECH
Q ss_conf             96356457888777787999999999862798399994147789--999999999871886998448
Q gi|254780869|r  195 MCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVS--RIRSIIDIAEQIGRKIVLLGS  259 (559)
Q Consensus       195 i~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~--Ri~~i~~~a~~~~R~v~i~Gr  259 (559)
                      -+-       .+-.|.....+.+.+.+ + +..+|++|=+.|-.  --.++++..++.|-++.-..|
T Consensus       225 kv~-------~HHGS~~s~s~~fl~~v-~-P~~~viS~g~~n~~~hP~~~~l~~l~~~gi~~~~t~~  282 (547)
T 2bib_A          225 KFN-------HHHDTNKSNTKDFIKNL-S-PSLIVQTSDSLPWKNGVDSEYVNWLKERGIERINAAS  282 (547)
T ss_dssp             ECT-------TTTBCSSSSCHHHHHHH-C-CSEEEESBSSCSBSSSBCHHHHHHHHTTTCEEEECBC
T ss_pred             ECC-------CCCCCCCCCCHHHHHHC-C-CCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEECC
T ss_conf             968-------98898867679899754-9-9799992787777889898999999987997998525


No 22 
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes}
Probab=99.44  E-value=1e-12  Score=108.89  Aligned_cols=132  Identities=17%  Similarity=0.217  Sum_probs=96.7

Q ss_pred             CCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHH-HCCCEEEEECCCCCCCCCHHHHHHHCCC
Q ss_conf             834660699995177786489997767678887675028707957987664-1246899605430121607888986299
Q gi|254780869|r   15 GEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER-KNLMAIFITHAHEDHYGALHDLWSFLHV   93 (559)
Q Consensus        15 ~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~-~~i~~i~iTH~H~DHiGalp~l~~~~~~   93 (559)
                      .+...|++++.    .++..+|||.|.......     .+   .++++++. .+|++|++||+|.||+|+++++... ++
T Consensus        27 ~~~~~N~~~i~----~~~~~vlIDtg~~~~~~~-----~l---~~~i~~~~~~~i~~ii~TH~H~DH~gG~~~~~~~-~~   93 (219)
T 3l6n_A           27 KEYSANSMYLV----TKKGVVLFDVPWEKVQYQ-----SL---MDTIKKRHNLPVVAVFATHSHDDRAGDLSFFNNK-GI   93 (219)
T ss_dssp             EEEEEEEEEEE----ETTEEEEESCCSSGGGHH-----HH---HHHHHHHHSCCEEEEECSSSSTTTTCCTHHHHHT-TC
T ss_pred             CEEEEEEEEEE----ECCEEEEEECCCCHHHHH-----HH---HHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHC-CC
T ss_conf             37700599999----899999992989989999-----99---9999860299638999799995433868999628-98


Q ss_pred             CEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEEC--CCCCCCCCEEEEEECCCEEEECCCCEE
Q ss_conf             779299999999999985488655622551755557763489999855--677776535679876817998334024
Q gi|254780869|r   94 PVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV--NHSIPETMALVIRSPVGNIVHTGDWKL  168 (559)
Q Consensus        94 pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~--~Hsip~a~~~~I~t~~g~i~ytGDfk~  168 (559)
                      ++|+++.+..+++..      ........++.+.++++|+.+++.+.+  +| .||+.++.+  |+.+++||||+-+
T Consensus        94 ~i~a~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~v~~~~pgH-t~g~~~v~~--~~~~vlf~GD~~~  161 (219)
T 3l6n_A           94 KTYATAKTNEFLKKD------GKATSTEIIKTGKPYRIGGEEFVVDFLGEGH-TADNVVVWF--PKYNVLDGGCLVK  161 (219)
T ss_dssp             EEEECHHHHHHHHHT------TCCCCSEECCTTSEEEETTEEEEEECCCCSS-SSSCCEEEE--TTTTEEEEETTSC
T ss_pred             EEEEHHHHHHHHHCC------CCCCCEEEECCCCEEEECCEEEEEEECCCCC-CCCCEEEEE--CCCCEEEEECCCC
T ss_conf             899602222332101------3344128823885786288568997247999-998589994--7899999928377


No 23 
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Probab=99.44  E-value=3.6e-12  Score=105.02  Aligned_cols=153  Identities=17%  Similarity=0.167  Sum_probs=86.7

Q ss_pred             EEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC--------
Q ss_conf             069999517778648999776767888767502870795798766412468996054301216078889862--------
Q gi|254780869|r   20 NMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFL--------   91 (559)
Q Consensus        20 N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~--------   91 (559)
                      +.+.+.|..    +.+|||||-+.              ..-|.....++++|||||.|.||++++|.++...        
T Consensus        11 ~~t~~~~~~----~~iLiD~G~g~--------------~~~l~~~~~~i~~IfiTH~H~DHi~gl~~l~~~~~~~~~~~~   72 (280)
T 2e7y_A           11 FSTWIYYSP----ERILFDAGEGV--------------STTLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDRE   72 (280)
T ss_dssp             TEEEEEEGG----GTEEEEECTTH--------------HHHHGGGGGGCCEEECSCCCHHHHTTHHHHHHHHHHHSGGGC
T ss_pred             CEEEEEECC----CEEEEECCHHH--------------HHHHCCCCCCCCEEEEECCCHHHHCCHHHHHHHHHHHCCCCC
T ss_conf             379999899----87999897449--------------998555522387899917863564679999998743103788


Q ss_pred             -CCCEECCHHHHHHHHHHHHH----CCCCCCCCEEEECCCCEEEE-----CCEEEEEEECCCCCCC-CCEEEEEE-----
Q ss_conf             -99779299999999999985----48865562255175555776-----3489999855677776-53567987-----
Q gi|254780869|r   92 -HVPVYASPFAIGLLEAKRVY----ERVSKKIPCISFQAGDKVDV-----GAFSIESVRVNHSIPE-TMALVIRS-----  155 (559)
Q Consensus        92 -~~pIY~s~~t~~li~~~~~~----~~~~~~~~~~~i~~~~~~~~-----g~~~v~~~~~~Hsip~-a~~~~I~t-----  155 (559)
                       .+.+|++..+..+.+.....    ...........+........     ..+++..+++.|..|. ++++.+..     
T Consensus        73 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~~~~~~~~~  152 (280)
T 2e7y_A           73 KPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAGGFKRYVQPFRTKHVSSEVSFGYHIFEVRRKL  152 (280)
T ss_dssp             CCEEEEEETTCHHHHHHHHHHHHHCGGGTTTEEEEEECTTCCEECCCSSCSCEEEEEEECCSCSSSCCEEEEEEEEEEEE
T ss_pred             CCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCC
T ss_conf             76145054468999999987530034445542101123554034203666633799886213567664046650245432


Q ss_pred             ----------------------------CCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf             ----------------------------6817998334024677665423898899860878829999635645788
Q gi|254780869|r  156 ----------------------------PVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMRE  204 (559)
Q Consensus       156 ----------------------------~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~  204 (559)
                                                  .+..+.|+||...         ++. .+.    +++|+|++|+|+....
T Consensus       153 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~gD~~~---------~~~-~~~----~~~d~li~E~~~~~~~  215 (280)
T 2e7y_A          153 KKEFQGLDSKEISRLVKEKGRDFVTEEYHKKVLTISGDSLA---------LDP-EEI----RGTELLIHECTFLDAR  215 (280)
T ss_dssp             CGGGTTCCHHHHHHHHHHHCTGGGEEEEEEEEEEECCSCSS---------CCH-HHH----TTCSCEEEECCBC---
T ss_pred             CHHHCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCC---------CCH-HHH----CCCCEEEEECCCHHHH
T ss_conf             12223577410000111056303420125761233687777---------886-782----7887899974643345


No 24 
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus HB8}
Probab=99.43  E-value=1.9e-13  Score=114.16  Aligned_cols=136  Identities=15%  Similarity=0.194  Sum_probs=92.5

Q ss_pred             CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH---HHCCCEEEEECCCCCCCCCHHHHHHHCCCC
Q ss_conf             66069999517778648999776767888767502870795798766---412468996054301216078889862997
Q gi|254780869|r   18 GMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE---RKNLMAIFITHAHEDHYGALHDLWSFLHVP   94 (559)
Q Consensus        18 G~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~---~~~i~~i~iTH~H~DHiGalp~l~~~~~~p   94 (559)
                      +-|||+++    .++.++|||||...+...    +.+   ...|.+.   .++|++|++||+|.||+|+.+++ .+.++|
T Consensus        21 ~vN~yli~----~~~~~vlIDtG~~~~~~~----~~l---~~~l~~~g~~~~~I~~Vi~TH~H~DH~Gg~~~l-~~~g~~   88 (317)
T 2zo4_A           21 TVNLYLLQ----GAGEVALVDTALGTRAAR----GAL---ELHLAELGLCFQDVKTILLTHHHPDHYGLSGFF-EGLGAR   88 (317)
T ss_dssp             EEEEEEEE----ETTEEEEECCCCSSHHHH----HHH---HHHHHHTTCCGGGCCEEEESCCSHHHHTTHHHH-HHTTCE
T ss_pred             CEEEEEEE----ECCEEEEEECCCCCHHHH----HHH---HHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHH-HHCCCC
T ss_conf             67999999----899899998999977899----999---999997499977724999799882222219999-745998


Q ss_pred             EECCHHHHHHHHHH--------------HHHCC-------------------CCCCCCEEEECCCCEEEECCEEEEEEEC
Q ss_conf             79299999999999--------------98548-------------------8655622551755557763489999855
Q gi|254780869|r   95 VYASPFAIGLLEAK--------------RVYER-------------------VSKKIPCISFQAGDKVDVGAFSIESVRV  141 (559)
Q Consensus        95 IY~s~~t~~li~~~--------------~~~~~-------------------~~~~~~~~~i~~~~~~~~g~~~v~~~~~  141 (559)
                      ||+++.+...+...              +...+                   ..+......+..++.+++|+.+++++++
T Consensus        89 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~gg~~~~vi~~  168 (317)
T 2zo4_A           89 VFLHEEEFARGHRFWREPEAFAEASWRLFLDHGTPEGALQGIRETVEKTRERVHPPQNPLPLRDGEALEVAGKRLRVLWT  168 (317)
T ss_dssp             EEEEGGGTTTHHHHHHCTTTSHHHHHHHHHHTTCCC-------CHHHHHHTTCCCCSSCEEECTTCEEEETTEEEEEEEC
T ss_pred             EECCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEECCCCEEECCCC
T ss_conf             31378888888765405055678888765421783333333443201235555688886794478556438845845778


Q ss_pred             -CCCCCCCCEEEEEECCCEEEECCCCEE
Q ss_conf             -677776535679876817998334024
Q gi|254780869|r  142 -NHSIPETMALVIRSPVGNIVHTGDWKL  168 (559)
Q Consensus       142 -~Hsip~a~~~~I~t~~g~i~ytGDfk~  168 (559)
                       +| .||++++.+  ++.+++|+||.-+
T Consensus       169 PGH-t~~~~~~~~--~~~~vlf~GD~l~  193 (317)
T 2zo4_A          169 PGH-ADGHAAFYL--EEEGVLLAGDALL  193 (317)
T ss_dssp             CSS-STTCEEEEE--TTTTEEEEETSCC
T ss_pred             CCC-CCCCEEEEE--CCCCEEEEECEEC
T ss_conf             878-998789998--6888578704863


No 25 
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*
Probab=99.42  E-value=4.1e-11  Score=97.40  Aligned_cols=139  Identities=20%  Similarity=0.275  Sum_probs=94.0

Q ss_pred             EEEEEECCCC-CCCCCE--EEEEEECCCCCCEEEEEECCCCCCCC-CCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             3999940686-834660--69999517778648999776767888-7675028707957987664124689960543012
Q gi|254780869|r    5 ELVFLPLGGV-GEIGMN--MALYGYGSPSSRKWIMIDCGVSFPKD-DLPGVDLVFPDITFIMKERKNLMAIFITHAHEDH   80 (559)
Q Consensus         5 ~i~~~~lGG~-~eiG~N--~~~~~~~~~~~~~~iiiD~G~~fp~~-~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DH   80 (559)
                      +|.|+--||. --.++|  |+++.+. +.+++.+|||||-.+-.. ...|++            ..++++|||||.|.||
T Consensus         2 kv~~LGtg~~~p~~~r~~s~~~v~~~-~~~~~~iLiD~G~g~~~~l~~~~~~------------~~~i~~I~iTH~H~DH   68 (320)
T 1y44_A            2 ELLFLGTGAGIPAKARNVTSVALKLL-EERRSVWLFDCGEATQHQMLHTTIK------------PRKIEKIFITHMHGDH   68 (320)
T ss_dssp             EEEEEECBSSSCCSSCCBCEEEEEET-TTTSEEEEECCCTTHHHHHTTSSCC------------GGGEEEEECSBCCGGG
T ss_pred             EEEEEEECCCCCCCCCCCCEEEEEEE-ECCCCEEEEECCHHHHHHHHHCCCC------------HHHCCEEEECCCCHHH
T ss_conf             89999778997999997688999998-0699489994977999999983999------------6676689972445665


Q ss_pred             CCCHHHHHHHC-------CCCEECCHHHHHHHHHHHHHCCC--CCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEE
Q ss_conf             16078889862-------99779299999999999985488--6556225517555577634899998556777765356
Q gi|254780869|r   81 YGALHDLWSFL-------HVPVYASPFAIGLLEAKRVYERV--SKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMAL  151 (559)
Q Consensus        81 iGalp~l~~~~-------~~pIY~s~~t~~li~~~~~~~~~--~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~  151 (559)
                      ++++|+++...       .++||+.+.+...+.........  .....+.++..+...+.+.+.+.++++.|... +.++
T Consensus        69 ~~Gl~~~~~~~~~~~~~~~~~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~-~~~~  147 (320)
T 1y44_A           69 VYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKTHLTYPLAIQEIEEGIVFEDDQFIVTAVSVIHGVE-AFGY  147 (320)
T ss_dssp             TTTHHHHHHHHHHTTCCSCEEEEESTTHHHHHHHHHHHTTCCCSSCEEEEECCSEEEEECSSEEEEEEECBSSSS-BEEE
T ss_pred             CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCEEECCCEEEEEEECCCCCC-CCCC
T ss_conf             167135555555316776542347701788998766532025566531255267740104632576541013555-3343


Q ss_pred             EEEECC
Q ss_conf             798768
Q gi|254780869|r  152 VIRSPV  157 (559)
Q Consensus       152 ~I~t~~  157 (559)
                      .+..+.
T Consensus       148 ~~~~~~  153 (320)
T 1y44_A          148 RVQEKD  153 (320)
T ss_dssp             EEEECC
T ss_pred             CCEECC
T ss_conf             301025


No 26 
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A
Probab=99.40  E-value=1.2e-12  Score=108.46  Aligned_cols=140  Identities=25%  Similarity=0.393  Sum_probs=92.7

Q ss_pred             EEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHH
Q ss_conf             99940686834660699995177786489997767678887675028707957987664124689960543012160788
Q gi|254780869|r    7 VFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHD   86 (559)
Q Consensus         7 ~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~   86 (559)
                      +++++. .|..+.|||+++    .++..+|||+|..        .+.+   .+++++...+++.|++||+|.||+|++++
T Consensus         2 ~i~~~~-~Gp~~~N~ylI~----~~~~~ilID~G~~--------~~~~---~~~l~~~~~~~~~vi~TH~H~DH~~g~~~   65 (207)
T 2zwr_A            2 RVFPVT-LGPLQENAYLVE----TGEGPVLIDPGDE--------PEKL---LALFQTTGLIPLAILLTHAHFDHVGAVAP   65 (207)
T ss_dssp             EEEEEE-ETTTTEEEEEEE----ETTEEEEECCCSC--------HHHH---HHHHHHHTCCCSCEECSCCCGGGTTTHHH
T ss_pred             EEEEEE-ECCHHCEEEEEE----ECCEEEEEECCCC--------HHHH---HHHHHHCCCCCEEEEECCCCHHHHCCHHH
T ss_conf             899997-088118899999----8998999949869--------9999---99999879972499979997667521999


Q ss_pred             HHHHCCCCEECCHHHHHHHHHHH---HHCCCCC---CCCEEEECCCCEEEECCEEEEEEEC-CCCCCCCCEEEEEECCCE
Q ss_conf             89862997792999999999999---8548865---5622551755557763489999855-677776535679876817
Q gi|254780869|r   87 LWSFLHVPVYASPFAIGLLEAKR---VYERVSK---KIPCISFQAGDKVDVGAFSIESVRV-NHSIPETMALVIRSPVGN  159 (559)
Q Consensus        87 l~~~~~~pIY~s~~t~~li~~~~---~~~~~~~---~~~~~~i~~~~~~~~g~~~v~~~~~-~Hsip~a~~~~I~t~~g~  159 (559)
                      +...+..++|.++.....+....   .......   ......++.+..+  .  .++.+.+ +| .||+.++.+  |+++
T Consensus        66 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~--~~~vi~~PGH-t~g~~~~~~--~~~~  138 (207)
T 2zwr_A           66 LVEALDLPVYLHPLDLPLYEGADLAARAWGLAIPKPPLPVRPLEEGMRL--F--GFQVLHLPGH-SPGHVAFYD--PEGA  138 (207)
T ss_dssp             HHHHHCCCEEECGGGHHHHHTHHHHHHHTTCCCCCCCSCCEECCTTCEE--T--TEEEEECCSS-STTCEEEEE--TTTT
T ss_pred             HHHHHCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEE--E--EEEEECCCCC-CCCCEEEEE--CCCC
T ss_conf             9998699489613322000362022101364323675430002245157--7--7998324887-878479998--7789


Q ss_pred             EEECCCCEEC
Q ss_conf             9983340246
Q gi|254780869|r  160 IVHTGDWKLD  169 (559)
Q Consensus       160 i~ytGDfk~d  169 (559)
                      ++||||+-+.
T Consensus       139 ~lf~GD~~~~  148 (207)
T 2zwr_A          139 QVFSGDLLFR  148 (207)
T ss_dssp             EEEEETSEET
T ss_pred             EEEECCEECC
T ss_conf             8886357036


No 27 
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER assymmetric UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A
Probab=99.39  E-value=5e-12  Score=103.97  Aligned_cols=137  Identities=13%  Similarity=0.143  Sum_probs=97.2

Q ss_pred             CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH---HHCCCEEEEECCCCCCCCCHHHHHHHCCCC
Q ss_conf             66069999517778648999776767888767502870795798766---412468996054301216078889862997
Q gi|254780869|r   18 GMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE---RKNLMAIFITHAHEDHYGALHDLWSFLHVP   94 (559)
Q Consensus        18 G~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~---~~~i~~i~iTH~H~DHiGalp~l~~~~~~p   94 (559)
                      +-|||++.    .++..+|||||..  . +.   +.+   .++|.+.   ..+|+.||+||.|.||+|+++++....+++
T Consensus        24 ~~~~~li~----~~~~~iLID~G~~--~-~~---~~i---~~~l~~~g~~~~~i~~il~TH~H~DH~gg~~~~~~~~~a~   90 (263)
T 1k07_A           24 DLASYLIV----TPRGNILINSDLE--A-NV---PMI---KASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQTKAK   90 (263)
T ss_dssp             SBCCEEEE----ETTEEEEECCCCG--G-GH---HHH---HHHHHHTTCCGGGEEEEECSSSSHHHHTTHHHHHHHHCCE
T ss_pred             CEEEEEEE----ECCEEEEEECCCC--C-CH---HHH---HHHHHHCCCCCCCEEEEEECCCCHHHHCHHHHHHHHCCCE
T ss_conf             90999999----8998999939895--2-09---999---9999976999534269997898701114199998753997


Q ss_pred             EECCHHHHHHHHHHHHHCC---------CCCCCCEEEECCCCEEEECCEEEEEEEC-CCCCCCCCEEEEEECC----CEE
Q ss_conf             7929999999999998548---------8655622551755557763489999855-6777765356798768----179
Q gi|254780869|r   95 VYASPFAIGLLEAKRVYER---------VSKKIPCISFQAGDKVDVGAFSIESVRV-NHSIPETMALVIRSPV----GNI  160 (559)
Q Consensus        95 IY~s~~t~~li~~~~~~~~---------~~~~~~~~~i~~~~~~~~g~~~v~~~~~-~Hsip~a~~~~I~t~~----g~i  160 (559)
                      ||+++.+...+........         .........+..++++++|+.+++++.+ +| .||+.++.+...+    +.+
T Consensus        91 i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~PGH-t~g~~~~~~~~~~~~~~~~~  169 (263)
T 1k07_A           91 YMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGTVLTAHLTPGH-TRGCTTWTMKLKDHGKQYQA  169 (263)
T ss_dssp             EEEEHHHHHHHHTTTTTCTTTTTCGGGCCCCCCCSEEECTTCEEEETTEEEEEEECCSS-STTCEEEEEEEEETTEEEEE
T ss_pred             EEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEECCCEEEEEEECCCC-CCCCEEEEEECCCCCEECCE
T ss_conf             99940587777521110012202333466777662574167467309857999957887-87789999981678538789


Q ss_pred             EECCCCEE
Q ss_conf             98334024
Q gi|254780869|r  161 VHTGDWKL  168 (559)
Q Consensus       161 ~ytGDfk~  168 (559)
                      +|+||+-+
T Consensus       170 ~~~gd~~~  177 (263)
T 1k07_A          170 VIIGSIGV  177 (263)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCCC
T ss_conf             99898447


No 28 
>2gmn_A Metallo-beta-lactamase; hydrolase; 1.40A {Bradyrhizobium japonicum usda 110} SCOP: d.157.1.1
Probab=99.39  E-value=2.3e-12  Score=106.45  Aligned_cols=128  Identities=20%  Similarity=0.249  Sum_probs=90.9

Q ss_pred             CCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH---HHCCCEEEEECCCCCCCCCHHHHHHHC
Q ss_conf             83466069999517778648999776767888767502870795798766---412468996054301216078889862
Q gi|254780869|r   15 GEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE---RKNLMAIFITHAHEDHYGALHDLWSFL   91 (559)
Q Consensus        15 ~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~---~~~i~~i~iTH~H~DHiGalp~l~~~~   91 (559)
                      |..|.|+|+++.    .+..+|||+|.  +.+    .+.+   ...|++.   ..+|+.|++||+|.||+||+++|...+
T Consensus        31 g~~~~n~ylI~~----~~~~iLID~G~--~~~----~~~i---~~~l~~~g~~~~~v~~ii~TH~H~DH~gg~~~l~~~~   97 (274)
T 2gmn_A           31 GTDGIAVYVIKT----SQGLILMDTAM--PQS----TGMI---KDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKET   97 (274)
T ss_dssp             CCSSSCCEEEEE----TTEEEEECCCC--GGG----HHHH---HHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHHH
T ss_pred             CCCCEEEEEEEE----CCEEEEEECCC--CCH----HHHH---HHHHHHCCCCCHHEEEEEECCCCCCCCCCHHHHHHHC
T ss_conf             999889999998----99979990989--434----9999---9999975998133039996989963506255657753


Q ss_pred             CCCEECCHHHHHHHHHHHHHCCCC-------CCCCEEEECCCCEEEECCEEEEEEEC-CCCCCCCCEEEEEEC
Q ss_conf             997792999999999999854886-------55622551755557763489999855-677776535679876
Q gi|254780869|r   92 HVPVYASPFAIGLLEAKRVYERVS-------KKIPCISFQAGDKVDVGAFSIESVRV-NHSIPETMALVIRSP  156 (559)
Q Consensus        92 ~~pIY~s~~t~~li~~~~~~~~~~-------~~~~~~~i~~~~~~~~g~~~v~~~~~-~Hsip~a~~~~I~t~  156 (559)
                      ++|||+++.+..+++.........       .......++.++.+++|+.+++++.+ +| .||++++.+...
T Consensus        98 ~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~g~~~~lg~~~i~~i~tpGH-t~g~~~~~~~~~  169 (274)
T 2gmn_A           98 GAQLVAGERDKPLLEGGYYPGDEKNEDLAFPAVKVDRAVKEGDRVTLGDTTLTAHATPGH-SPGCTSWEMTVK  169 (274)
T ss_dssp             CCEEEEEGGGHHHHHHTCCTTCTTCGGGCCCCCCCSEEECTTCEEEETTEEEEEEECCSS-STTCEEEEEEEE
T ss_pred             CCEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCCEEEEECCCC-CCCCEEEEEECC
T ss_conf             984875010104443233332211233466887640894057534227641357737988-998789998645


No 29 
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=99.38  E-value=6e-12  Score=103.41  Aligned_cols=132  Identities=17%  Similarity=0.235  Sum_probs=94.1

Q ss_pred             CCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH-HHCCCEEEEECCCCCCCCCHHHHHHHCCCCE
Q ss_conf             466069999517778648999776767888767502870795798766-4124689960543012160788898629977
Q gi|254780869|r   17 IGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE-RKNLMAIFITHAHEDHYGALHDLWSFLHVPV   95 (559)
Q Consensus        17 iG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~-~~~i~~i~iTH~H~DHiGalp~l~~~~~~pI   95 (559)
                      .+.|++++.    .++..+|||+|........     +   .+++.+. ..++++||+||+|.||+||+.++ .+..+++
T Consensus        25 ~~~N~~~i~----~~~~~iliD~~~~~~~~~~-----l---~~~i~~~~~~~i~~vi~TH~H~DH~~G~~~~-~~~~~~i   91 (223)
T 1m2x_A           25 YAANAVYLV----TDKGVVVIDCPWGEDKFKS-----F---TDEIYKKHGKKVIMNIATHSHDDRAGGLEYF-GKIGAKT   91 (223)
T ss_dssp             EEEEEEEEE----ETTEEEEESCCSSGGGHHH-----H---HHHHHHHHCCCEEEEECSSSSTTTTTTHHHH-HHTTCEE
T ss_pred             ECCEEEEEE----ECCEEEEEECCCCHHHHHH-----H---HHHHHHHHCCCEEEEEECCCCCCCCCCHHHH-HHCCCEE
T ss_conf             766799999----8998999979999899999-----9---9999884199758999679997510619999-8689979


Q ss_pred             ECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEE--CCCCCCCCCEEEEEECCCEEEECCCCEECC
Q ss_conf             929999999999998548865562255175555776348999985--567777653567987681799833402467
Q gi|254780869|r   96 YASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVR--VNHSIPETMALVIRSPVGNIVHTGDWKLDD  170 (559)
Q Consensus        96 Y~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~--~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~  170 (559)
                      |+++.+..++...    +.  ......++.+..+++|+.+++.+.  -+|+ ||+..  +..|..+++||||+-++.
T Consensus        92 ~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~lg~~~i~~~~~~pgHt-~~~~~--~~~p~~~vlf~GD~~~~~  159 (223)
T 1m2x_A           92 YSTKMTDSILAKE----NK--PRAQYTFDNNKSFKVGKSEFQVYYPGKGHT-ADNVV--VWFPKEKVLVGGCIIKSA  159 (223)
T ss_dssp             EEEHHHHHHHHHT----TC--CCCSEEESSCEEEEETTEEEEEECCCSSSS-SSCCE--EEETTTTEEEEETTSCCT
T ss_pred             EECCCHHHHHHCC----CC--CCCCCCCCCCEEEEECCEEEEEECCCCCCC-CCCEE--EEECCCCEEEECCEECCC
T ss_conf             9612044444203----66--567412356338998998999824679999-98689--994799999982768889


No 30 
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*
Probab=99.36  E-value=2e-12  Score=106.77  Aligned_cols=141  Identities=21%  Similarity=0.325  Sum_probs=95.7

Q ss_pred             EEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH---HHCCCEEEEECCCCCCCCCH
Q ss_conf             994068683466069999517778648999776767888767502870795798766---41246899605430121607
Q gi|254780869|r    8 FLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE---RKNLMAIFITHAHEDHYGAL   84 (559)
Q Consensus         8 ~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~---~~~i~~i~iTH~H~DHiGal   84 (559)
                      +..+|..+   -|||++.-   .++.++|||||..  .+.    +.+   ...|.+.   .++|+.|++||+|.||+|++
T Consensus        16 ~~~~g~~~---~~~yll~~---g~~~~~lIDtG~~--~~~----~~~---~~~l~~~~~~~~~I~~ii~TH~H~DH~gg~   80 (303)
T 2vw8_A           16 LCLLGDVQ---VPVFLLRL---GEASWALVEGGIS--RDA----ELV---WADLCRWVADPSQVHYWLITHKHYDHCGLL   80 (303)
T ss_dssp             EEEESCTT---SCEEEEEE---ETTEEEEECCCCG--GGH----HHH---HHHHHHHCSCGGGEEEEECCCCSTTTTTTH
T ss_pred             EEECCCCC---CEEEEEEE---CCCCEEEEECCCC--CHH----HHH---HHHHHHHCCCCHHCCEEEECCCCCCCCCCH
T ss_conf             33137675---27999997---9986899959898--529----999---999998289824279899590998650863


Q ss_pred             HHHHHHC-CCCEECCHHHHHHHHHH--------HHHCC-----------CCCCCCEEEECCCCEEEECC-EEEEEEEC-C
Q ss_conf             8889862-99779299999999999--------98548-----------86556225517555577634-89999855-6
Q gi|254780869|r   85 HDLWSFL-HVPVYASPFAIGLLEAK--------RVYER-----------VSKKIPCISFQAGDKVDVGA-FSIESVRV-N  142 (559)
Q Consensus        85 p~l~~~~-~~pIY~s~~t~~li~~~--------~~~~~-----------~~~~~~~~~i~~~~~~~~g~-~~v~~~~~-~  142 (559)
                      ++|...+ +++||+++.+...+...        .....           .........+..++.+++|+ ..++++++ +
T Consensus        81 ~~l~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~lg~~~~~~~i~~PG  160 (303)
T 2vw8_A           81 PYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQRLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHG  160 (303)
T ss_dssp             HHHGGGCTTCEEEEEHHHHHHTTCHHHHHHHHHHHHHTCCTTCCCCCCCCGGGSCEEEECTTCEEEEETTEEEEEEECTT
T ss_pred             HHHHHCCCCCEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEECCCEEEECCCCCC
T ss_conf             45542167866994488999873630134577777654322102455555666785694799989857822673266799


Q ss_pred             CCCCCCCEEEEEECCCEEEECCCC
Q ss_conf             777765356798768179983340
Q gi|254780869|r  143 HSIPETMALVIRSPVGNIVHTGDW  166 (559)
Q Consensus       143 Hsip~a~~~~I~t~~g~i~ytGDf  166 (559)
                      | .||++++.  .+..+++|+||.
T Consensus       161 H-t~g~~~~~--~~~~~~lf~GD~  181 (303)
T 2vw8_A          161 H-SDDHVVFY--DVRRRRLFCGDA  181 (303)
T ss_dssp             S-STTCEEEE--ETTTTEEEEETT
T ss_pred             C-CCCCCCEE--ECCCCEEEECCC
T ss_conf             6-99875637--179999998283


No 31 
>2whg_A VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BETA-alpha fold; HET: FLC; 1.90A {Pseudomonas aeruginosa} PDB: 2wrs_A* 1ko3_A 1ko2_A
Probab=99.32  E-value=5.5e-12  Score=103.70  Aligned_cols=133  Identities=20%  Similarity=0.203  Sum_probs=91.5

Q ss_pred             CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH-HHCCCEEEEECCCCCCCCCHHHHHHHCCCCEE
Q ss_conf             66069999517778648999776767888767502870795798766-41246899605430121607888986299779
Q gi|254780869|r   18 GMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE-RKNLMAIFITHAHEDHYGALHDLWSFLHVPVY   96 (559)
Q Consensus        18 G~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~-~~~i~~i~iTH~H~DHiGalp~l~~~~~~pIY   96 (559)
                      ..|||++.    .++.++|||+|........     +   .+++.+. ..+|+.|++||+|.||+|+++++.. .++++|
T Consensus        37 ~~N~~~i~----~~~~~vlIDtg~~~~~~~~-----l---~~~i~~~~~~~v~~vi~TH~H~DH~gg~~~~~~-~~~~~~  103 (230)
T 2whg_A           37 PSNGLIVR----DGDELLLIDTAWGAKNTAA-----L---LAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRA-AGVATY  103 (230)
T ss_dssp             EEEEEEEE----ETTEEEEESCCSSHHHHHH-----H---HHHHHHHTCSCEEEEECSSSSHHHHTTHHHHHH-TTCEEE
T ss_pred             CCEEEEEE----ECCEEEEEECCCCHHHHHH-----H---HHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHH-CCCEEE
T ss_conf             11899999----6999999979899799999-----9---999998319973899977998200160999975-899499


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEE
Q ss_conf             299999999999985488655622551755557763489999855677776535679876817998334024
Q gi|254780869|r   97 ASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKL  168 (559)
Q Consensus        97 ~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~  168 (559)
                      +++.+..+++.....  ......-.....++.+.+|++++....-+| .||+..+.  .|+.+++||||.-+
T Consensus       104 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~pGH-t~g~~~~~--~~~~~vlf~GD~v~  170 (230)
T 2whg_A          104 ASPSTRRLAEAEGNE--IPTHSLEGLSSSGDAVRFGPVELFYPGAAH-STDNLVVY--VPSANVLYGGCAVH  170 (230)
T ss_dssp             ECHHHHHHHHHHTCC--CCSEECCSCSSTTCEEEETTEEEECCCSSS-STTCCEEE--ETTTTEEEEETTSC
T ss_pred             ECHHHHHHHHHCCCC--CCCCCCCEEECCCCEEEECCEEEEEECCCC-CCCCEEEE--ECCCCEEEECCEEC
T ss_conf             878999999852766--764342035036866886786899837999-98979999--86889999877874


No 32 
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana}
Probab=99.29  E-value=2e-11  Score=99.65  Aligned_cols=128  Identities=23%  Similarity=0.179  Sum_probs=93.5

Q ss_pred             CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCEEC
Q ss_conf             66069999517778648999776767888767502870795798766412468996054301216078889862997792
Q gi|254780869|r   18 GMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYA   97 (559)
Q Consensus        18 G~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~~~pIY~   97 (559)
                      |-++|++.-..+..++.++||.|-..       ++.   ..++++++.-++.+||+||+|.||+++++.|...+..++|.
T Consensus        14 ~~~sYli~d~~~~t~eaivIDP~~~~-------~~~---~~~~i~~~~~~i~~Il~TH~H~DH~~g~~~l~~~~~~~~~~   83 (245)
T 2gcu_A           14 STFTYLLADVSHPDKPALLIDPVDKT-------VDR---DLKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSV   83 (245)
T ss_dssp             TEEEEEEEETTSTTCEEEEESCBGGG-------HHH---HHHHHHHHTCEEEEEECSSCCSSSCBSHHHHHHHSTTCEEE
T ss_pred             CEEEEEEEECCCCCCEEEEEECCCCC-------HHH---HHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             30899998588899989999299875-------899---99999986996789983589768871399999764154100


Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEE----ECCCEEEECCCCEE
Q ss_conf             999999999999854886556225517555577634899998556777765356798----76817998334024
Q gi|254780869|r   98 SPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIR----SPVGNIVHTGDWKL  168 (559)
Q Consensus        98 s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~----t~~g~i~ytGDfk~  168 (559)
                      ....             .....-..++.++.+++|+++++++.+..-.||++.|.+.    .+...++||||.-|
T Consensus        84 ~~~~-------------~~~~~d~~~~dgd~~~iG~~~l~vi~TPGHT~gsv~~~~~d~~~~~~~~~lFtGDtLF  145 (245)
T 2gcu_A           84 ISKA-------------SGSKADLFLEPGDKVSIGDIYLEVRATPGHTAGCVTYVTGEGADQPQPRMAFTGDAVL  145 (245)
T ss_dssp             EEGG-------------GCCCCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEECCSTTSCSSCEEEEETTSB
T ss_pred             CCCC-------------CCCCCCEEECCCCCCEECCEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEECCCEE
T ss_conf             0124-------------6766756614887214898999999778988633899943667777663799547605


No 33 
>2yz3_A Metallo-beta-lactamase; enzyme-inhibitor complex, hydrolase; HET: M5P; 2.30A {Pseudomonas putida} SCOP: d.157.1.1
Probab=99.29  E-value=7.3e-12  Score=102.79  Aligned_cols=134  Identities=19%  Similarity=0.207  Sum_probs=91.7

Q ss_pred             CCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH-HHCCCEEEEECCCCCCCCCHHHHHHHCCCCE
Q ss_conf             466069999517778648999776767888767502870795798766-4124689960543012160788898629977
Q gi|254780869|r   17 IGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE-RKNLMAIFITHAHEDHYGALHDLWSFLHVPV   95 (559)
Q Consensus        17 iG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~-~~~i~~i~iTH~H~DHiGalp~l~~~~~~pI   95 (559)
                      .+.|++++.    .++..++||.|..-..     .+.+   .+++++. ..+|+.||+||+|.||+|++.++.. .++|+
T Consensus        67 ~~~N~~~v~----~~~~~vlIDtg~~~~~-----~~~l---~~~i~~~~~~pi~~vi~TH~H~DH~gG~~~~~~-~~~~v  133 (266)
T 2yz3_A           67 YPSNGLIVR----DGDELLLIDTAWGAKN-----TAAL---LAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRA-AGVAT  133 (266)
T ss_dssp             EEEEEEEEE----ETTEEEEESCCSSHHH-----HHHH---HHHHHHHTCSCEEEEECSSSSHHHHTTHHHHHH-TTCEE
T ss_pred             EEEEEEEEE----ECCEEEEEECCCCHHH-----HHHH---HHHHHHHHCCCEEEEEECCCCHHHCCCHHHHHC-CCCEE
T ss_conf             612799999----8999999909999899-----9999---999998439972799979998100087556520-69769


Q ss_pred             ECCHHHHHHHHHHHHHCCCCCCCC-EEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEEC
Q ss_conf             929999999999998548865562-25517555577634899998556777765356798768179983340246
Q gi|254780869|r   96 YASPFAIGLLEAKRVYERVSKKIP-CISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLD  169 (559)
Q Consensus        96 Y~s~~t~~li~~~~~~~~~~~~~~-~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d  169 (559)
                      |+++.|..+++..-   ...+... -.....++.+.+|++++..+.-+|+ ||...  +..|+.+++||||.-++
T Consensus       134 ~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~v~~~~~gpgHt-~~~~~--v~~p~~~vLf~GD~v~~  202 (266)
T 2yz3_A          134 YASPSTRRLAEVEG---NEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHS-TDNLV--VYVPSASVLYGGCAIYE  202 (266)
T ss_dssp             EECHHHHHHHHTTT---CCCCSEECCSCSSTTEEEEETTEEEEECCSSSS-SSCCE--EEEGGGTEEEEETTSCC
T ss_pred             EEECCHHHHHHHCC---CCCCCCCCCEECCCCCEEEECCEEEEEECCCCC-CCCEE--EEECCCCEEEECCEECC
T ss_conf             99620223333214---667754431460468678878878874069999-98489--99889999998646877


No 34 
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, NSR435A, DFA5; 1.80A {Nostoc SP}
Probab=99.29  E-value=1.2e-10  Score=94.03  Aligned_cols=131  Identities=16%  Similarity=0.186  Sum_probs=88.0

Q ss_pred             CCCC--EEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH--HHCCCEEEEECCCCCCCCCHHHHHHHC
Q ss_conf             3466--069999517778648999776767888767502870795798766--412468996054301216078889862
Q gi|254780869|r   16 EIGM--NMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHEDHYGALHDLWSFL   91 (559)
Q Consensus        16 eiG~--N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~--~~~i~~i~iTH~H~DHiGalp~l~~~~   91 (559)
                      |.|.  |||++.     +++.+|||+|..  ...    +.+   +..+.+.  .++|++|++||+|.||+|+++.++..+
T Consensus        38 ~~G~s~N~YlI~-----~d~~vLIDtG~~--~~~----~~~---l~~~~~~~~~~~I~~IilTH~H~DH~Ggl~~~~~~~  103 (262)
T 3hnn_A           38 ERGTTSNSYVIE-----GDKTAIIDPPVE--SFM----KIY---LEALQQTVNLKKLDYVILGHFSPNRIPTFKALLELA  103 (262)
T ss_dssp             CCCEEEEEEEEE-----SSSEEEECCCCH--HHH----HHH---HHHHHHHSCGGGEEEEECSSCCGGGHHHHHHHHHHC
T ss_pred             CCCEEEEEEEEE-----CCCEEEEECCCH--HHH----HHH---HHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf             897188999993-----299999918975--579----999---999996378425889995997777762259999744


Q ss_pred             -CCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEC-CEEEEEEEC--CCCCCCCCEEEEEECCCEEEECCCCE
Q ss_conf             -99779299999999999985488655622551755557763-489999855--67777653567987681799833402
Q gi|254780869|r   92 -HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVG-AFSIESVRV--NHSIPETMALVIRSPVGNIVHTGDWK  167 (559)
Q Consensus        92 -~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g-~~~v~~~~~--~Hsip~a~~~~I~t~~g~i~ytGDfk  167 (559)
                       ++++|+++.+..+++..+.    ........+..++.+.++ +..+.+++.  .| .|++..  +.-+..+++||||.-
T Consensus       104 p~~~v~~~~~~~~~l~~~~~----~~~~~~~~~~~gd~~~~~~g~~l~~i~~~~~H-~~~~~~--~y~~~~~vLftgD~~  176 (262)
T 3hnn_A          104 PQITFVCSLPAAGDLRAAFP----DDNLNILPMRGKETLDLGKGHVLKFLPIPSPR-WPAGLC--TYDVQTQILYTDKIF  176 (262)
T ss_dssp             TTCEEEECHHHHHHHHHHSS----SSCCEEEECCSSCEEECSTTCEEEEEECCCSS-CTTCEE--EEETTTTEEEEETTT
T ss_pred             CCCEEEECHHHHHHHHHHHC----CCCCCCCEECCCCEEEECCCCEEEEEECCCCC-CCCCEE--EEECCCCEEEECCCC
T ss_conf             48579977899988876523----56643220025514762278237999668999-899629--998788869966634


No 35 
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding, periplasm,; HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A
Probab=99.28  E-value=2.2e-11  Score=99.37  Aligned_cols=146  Identities=13%  Similarity=0.132  Sum_probs=87.7

Q ss_pred             CCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH-HHCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf             068683466069999517778648999776767888767502870795798766-4124689960543012160788898
Q gi|254780869|r   11 LGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE-RKNLMAIFITHAHEDHYGALHDLWS   89 (559)
Q Consensus        11 lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~-~~~i~~i~iTH~H~DHiGalp~l~~   89 (559)
                      +++......|++++.    .++.+++||+|.. |..    .+.+   ...+++. .++++.|++||+|.||+|+.+++..
T Consensus        15 ~~~~~~~~~N~~~i~----~~~~~vliD~g~~-~~~----~~~l---~~~i~~~~~~pi~~vi~TH~H~DH~gg~~~~~~   82 (227)
T 3iog_A           15 VEDNYYVQENSMVYF----GAKGVTVVGATWT-PDT----AREL---HKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKS   82 (227)
T ss_dssp             EEECSSSCEEEEEEE----CSSCEEEESCCSS-HHH----HHHH---HHHHHTTCCSCEEEEECSSSSHHHHTTHHHHHH
T ss_pred             EECCCCCCCEEEEEE----ECCEEEEEECCCC-HHH----HHHH---HHHHHHHCCCCCEEEEECCCCCCCCCCHHHCCC
T ss_conf             857972154289999----7998699929899-799----9999---999986149984199968999653281233054


Q ss_pred             HCCCCEECCHHHHHHHHHHHHHC--------CCCCCCC----EEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECC
Q ss_conf             62997792999999999999854--------8865562----25517555577634899998556777765356798768
Q gi|254780869|r   90 FLHVPVYASPFAIGLLEAKRVYE--------RVSKKIP----CISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPV  157 (559)
Q Consensus        90 ~~~~pIY~s~~t~~li~~~~~~~--------~~~~~~~----~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~  157 (559)
                       ..+|||+++.+.++++......        .......    -...+....+..|.+++-.+.-+| .||+.++.+  |+
T Consensus        83 -~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~g~v~~~~~~pGH-t~g~~~~~~--~~  158 (227)
T 3iog_A           83 -IGAKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRAFYAGPAH-TPDGIFVYF--PD  158 (227)
T ss_dssp             -TTCEEEEEHHHHHHHHHHHHHHHHHHHHHCTTSCCCCCCCCSEEESSCEEETTTTEEEECCCCSS-SSSCCEEEE--TT
T ss_pred             -CCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCEEECCCCEEEEEECCCC-CCCCEEEEE--CC
T ss_conf             -68367617989999874123332222202554578765688688658588558718999957898-998664672--78


Q ss_pred             CEEEECCCCEECCCC
Q ss_conf             179983340246776
Q gi|254780869|r  158 GNIVHTGDWKLDDDA  172 (559)
Q Consensus       158 g~i~ytGDfk~d~~p  172 (559)
                      .+++||||.-++..|
T Consensus       159 ~~vlf~GD~~~~~~~  173 (227)
T 3iog_A          159 EQVLYGGCILKEKLG  173 (227)
T ss_dssp             TTEEECGGGSCSSCC
T ss_pred             CCEEEECCCCCCCCC
T ss_conf             789997463578967


No 36 
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching, alternative binding site, product complex; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovarkurstaki} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Probab=99.28  E-value=2.1e-11  Score=99.46  Aligned_cols=156  Identities=19%  Similarity=0.255  Sum_probs=91.1

Q ss_pred             CCCCEEEEEECCCC----------------CCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCC-------EEEECCC
Q ss_conf             98863999940686----------------834660699995177786489997767678887675-------0287079
Q gi|254780869|r    1 MKNEELVFLPLGGV----------------GEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPG-------VDLVFPD   57 (559)
Q Consensus         1 m~~~~i~~~~lGG~----------------~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~g-------id~iiPd   57 (559)
                      |...+|.+++-|=+                =++--+|++++    ..+..+|||+|+.-.....++       -+...|.
T Consensus         5 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~pv~~~LI~----~~~g~iLiDtG~~~~~~~~~~~~~~~~~~~~~~~~   80 (254)
T 3dha_A            5 MTVKKLYFIPAGRCMLDHSSVNSALTPGKLLNLPVWCYLLE----TEEGPILVDTGMPESAVNNEGLFNGTFVEGQILPK   80 (254)
T ss_dssp             CCBSEEEEEEEEEEEEEGGGTSTTSCSCCEEEEEEEEEEEE----ETTEEEEECCCCCGGGBTCTTTTTTSTTTTTEEEE
T ss_pred             CCEEEEEEECCCEEEECHHHCCCCCCCCCEEEEEEEEEEEE----ECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             34148999538659988688056799996698634899999----89951999598895532233112542111235656


Q ss_pred             -------HHHHHHHH---HCCCEEEEECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHH--HCCCCCCCCEEEECC
Q ss_conf             -------57987664---124689960543012160788898629977929999999999998--548865562255175
Q gi|254780869|r   58 -------ITFIMKER---KNLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRV--YERVSKKIPCISFQA  125 (559)
Q Consensus        58 -------~~~l~~~~---~~i~~i~iTH~H~DHiGalp~l~~~~~~pIY~s~~t~~li~~~~~--~~~~~~~~~~~~i~~  125 (559)
                             .+.|++..   ++|+.|++||+|.||+|++.++   .+.|||+++.........-.  .....+......++.
T Consensus        81 ~~~~~~l~~~L~~~G~~p~dI~~Vi~TH~H~DH~Gg~~~f---~~A~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (254)
T 3dha_A           81 MTEEDRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNGAF---TNTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEG  157 (254)
T ss_dssp             BCGGGSHHHHHHHHTCCGGGCSEEECSCCSHHHHTTGGGC---SSSCEEEEHHHHHHHHHCTTSCGGGSCTTSCEEEECS
T ss_pred             CCHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHCCCCCCC---CCCCCCCCHHHHHHHHCCCHHHHHCCCCCCCEEEEEC
T ss_conf             5606689999998499979996999079972102753113---5642003888999874721110110476555389607


Q ss_pred             CCEEEECCEEEEEEEC-CCCCCCCCEEEEEECC-CEEEECCCCE
Q ss_conf             5557763489999855-6777765356798768-1799833402
Q gi|254780869|r  126 GDKVDVGAFSIESVRV-NHSIPETMALVIRSPV-GNIVHTGDWK  167 (559)
Q Consensus       126 ~~~~~~g~~~v~~~~~-~Hsip~a~~~~I~t~~-g~i~ytGDfk  167 (559)
                       +..-+++++  ++.+ +| .||+.++.++++. +.++++||.-
T Consensus       158 -~~~~~~gi~--v~~tpGH-T~G~~~~~v~~~~~~~vl~~GD~~  197 (254)
T 3dha_A          158 -DYEVVPGVQ--LLYTPGH-SPGHQSLFIETEQSGSVLLTIDAS  197 (254)
T ss_dssp             -SEEEETTEE--EEECCSS-STTCEEEEEEETTTEEEEEEETTC
T ss_pred             -CEEECCCEE--ECCCCCC-CCCCEEEEEECCCCCEEEEEECCC
T ss_conf             -537618749--8245899-942389999828998899996778


No 37 
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5
Probab=99.26  E-value=7.7e-12  Score=102.61  Aligned_cols=139  Identities=19%  Similarity=0.227  Sum_probs=82.6

Q ss_pred             CCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH---HHCCCEEEEECCCCCCCCCHHHHHHH--
Q ss_conf             3466069999517778648999776767888767502870795798766---41246899605430121607888986--
Q gi|254780869|r   16 EIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE---RKNLMAIFITHAHEDHYGALHDLWSF--   90 (559)
Q Consensus        16 eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~---~~~i~~i~iTH~H~DHiGalp~l~~~--   90 (559)
                      ++.-|||+++    ..++.+|||||..-.-....|  .+   .+.|.+.   .++|+.|++||.|.||+|++..+...  
T Consensus        94 ~~~~n~~LI~----~g~~~iLIDtG~g~~~~~~~~--~l---~~~L~~~Gi~p~dId~VvlTH~H~DHiGGl~~~~~~~f  164 (331)
T 1p9e_A           94 ETSVTGYLVN----TGSKLVLVDTGAAGLFGPTLG--RL---AANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQLAF  164 (331)
T ss_dssp             EEEEEEEEEE----CSSCEEEECCCCTTSSCTTCC--CH---HHHHHHTTCCGGGCCEEECSCCCHHHHGGGEETTEESS
T ss_pred             CCEEEEEEEE----ECCEEEEEECCCCCCCCCHHH--HH---HHHHHHCCCCHHHCCEEEECCCCHHHHCCHHHHHHHHC
T ss_conf             3216999999----899889998999856661188--99---99999849998999799959797010141335566407


Q ss_pred             CCCCEECCHHHHHHHHHHHHHCCCCCC-------------------CCEEEECCCCEEEECCEEEEEEEC-CCCCCCCCE
Q ss_conf             299779299999999999985488655-------------------622551755557763489999855-677776535
Q gi|254780869|r   91 LHVPVYASPFAIGLLEAKRVYERVSKK-------------------IPCISFQAGDKVDVGAFSIESVRV-NHSIPETMA  150 (559)
Q Consensus        91 ~~~pIY~s~~t~~li~~~~~~~~~~~~-------------------~~~~~i~~~~~~~~g~~~v~~~~~-~Hsip~a~~  150 (559)
                      .+..+|++...................                   ..+...+....+ +.+  ++.+++ +| .||+.+
T Consensus       165 p~a~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ei-~~G--i~vi~tpGH-TpGh~~  240 (331)
T 1p9e_A          165 PNAVVRADQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFSGNTDL-VPG--IKALASHGH-TPGHTT  240 (331)
T ss_dssp             TTCEEECBHHHHHHHSCHHHHTTCSSTTSCHHHHHHHHHHHHHHHTTCBCCBCSSEEC-STT--EEEEECTTS-STTCEE
T ss_pred             CCCEEECCHHHHHHHHCCHHHHCCCCCHHCCHHHHHHHHCCCCCCCCEEEEECCCCEE-CCC--EEEEECCCC-CCCCEE
T ss_conf             8723431467799874220010154200001144544412320004637850574020-586--489855899-987679


Q ss_pred             EEEEECCCEEEECCCCE
Q ss_conf             67987681799833402
Q gi|254780869|r  151 LVIRSPVGNIVHTGDWK  167 (559)
Q Consensus       151 ~~I~t~~g~i~ytGDfk  167 (559)
                      +.+++++++++|+||.-
T Consensus       241 ~~i~~~~~~~lf~GD~i  257 (331)
T 1p9e_A          241 YVVESQGQKLALLGDLI  257 (331)
T ss_dssp             EEEEETTEEEEECTTSC
T ss_pred             EEEECCCEEEEEEECCC
T ss_conf             99961990899993734


No 38 
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*
Probab=99.26  E-value=4.2e-09  Score=82.97  Aligned_cols=119  Identities=20%  Similarity=0.260  Sum_probs=85.5

Q ss_pred             HCCCEEEEECCCCCCCCCHHH--HHHHC--CCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEEC
Q ss_conf             124689960543012160788--89862--99779299999999999985488655622551755557763489999855
Q gi|254780869|r   66 KNLMAIFITHAHEDHYGALHD--LWSFL--HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV  141 (559)
Q Consensus        66 ~~i~~i~iTH~H~DHiGalp~--l~~~~--~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~  141 (559)
                      .+|++|||||.|.||++....  +....  .+|+|++..+..+++..    +. +...+..+++++.+.+++++++.++.
T Consensus       108 ~~IDaVLiTH~H~DHld~~~l~~~~~~~~~~~~~~gP~~~~~~l~~~----g~-~~~~i~~~~~g~~~~v~~~~i~~~~~  182 (360)
T 2wyl_A          108 RQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGW----GV-PKERCIVVKPGDVVKVKDIEIHALDA  182 (360)
T ss_dssp             CCCSEEECSBSCTTTCCHHHHHHHHHHSCTTCCEEECHHHHHHHHHH----TC-CGGGEEECCTTCEEEETTEEEEEEEC
T ss_pred             CCCCEEEECCCCHHHCCCHHHHHHHHCCCCCCEEECCHHHHHHHHHC----CC-CHHHEEEECCCCEEEEECCEEEEEEE
T ss_conf             88889997999602178099999985476774386588999999866----99-65515760578657740213577631


Q ss_pred             CCCC--------------------CCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCC
Q ss_conf             6777--------------------765356798768179983340246776654238988998608788299996356
Q gi|254780869|r  142 NHSI--------------------PETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDST  199 (559)
Q Consensus       142 ~Hsi--------------------p~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT  199 (559)
                      .|+.                    ..++|+.+++++++|+|+||=.        ...++..+.+..  .+|++++...
T Consensus       183 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~ie~~g~tIy~sGDT~--------~~~~~~~~~~~~--~iDvall~ig  250 (360)
T 2wyl_A          183 FDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSH--------YSNYYAKHGNEH--QIDVALGSYG  250 (360)
T ss_dssp             CCC------------------CCTTTBEEEEEEETTEEEEECTTCC--------CCTTHHHHHHHS--CCCEEEEEBC
T ss_pred             EEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCC--------CCHHHHHHHCCC--CCCEEEECCC
T ss_conf             4555566426644466655777877404899971991899926988--------668899985348--9858996588


No 39 
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A
Probab=99.26  E-value=3.1e-11  Score=98.30  Aligned_cols=132  Identities=19%  Similarity=0.235  Sum_probs=97.0

Q ss_pred             EEEEEECCCCCCCCCE-EEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf             3999940686834660-699995177786489997767678887675028707957987664124689960543012160
Q gi|254780869|r    5 ELVFLPLGGVGEIGMN-MALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGA   83 (559)
Q Consensus         5 ~i~~~~lGG~~eiG~N-~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGa   83 (559)
                      +|.++|.  ..+   | +|++.  .+..++.++||.|-     .    +   +-.++++++..++.+|++||.|.||+||
T Consensus         2 ~i~~ip~--l~d---Ny~Yli~--d~~t~~~~vIDp~~-----~----~---~vl~~l~~~~~~l~~Il~TH~H~DH~~g   62 (254)
T 1xm8_A            2 QIELVPC--LKD---NYAYILH--DEDTGTVGVVDPSE-----A----E---PIIDSLKRSGRNLTYILNTHHHYDHTGG   62 (254)
T ss_dssp             EEEEEEE--TTT---EEEEEEE--CTTTCCEEEECCSS-----H----H---HHHHHHHHHTCCCCEEECSSCCHHHHTT
T ss_pred             EEEEEEE--ECC---EEEEEEE--ECCCCEEEEECCCC-----C----H---HHHHHHHHCCCCEEEEEECCCCCCCCCH
T ss_conf             7899743--425---7899999--89999899998978-----2----9---9999999779916899944788655266


Q ss_pred             HHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCEEEEC
Q ss_conf             78889862997792999999999999854886556225517555577634899998556777765356798768179983
Q gi|254780869|r   84 LHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHT  163 (559)
Q Consensus        84 lp~l~~~~~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~yt  163 (559)
                      ..+|...+++|||+++....           .....-..++.++.+++|+++++.+.+..-.||+++|.+  ++..++||
T Consensus        63 ~~~l~~~~~~~i~~~~~~~~-----------~~~~~~~~~~dgd~i~~g~~~~~vi~tPGHT~ghv~~~~--~~~~~lft  129 (254)
T 1xm8_A           63 NLELKDRYGAKVIGSAMDKD-----------RIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYF--PGSRAIFT  129 (254)
T ss_dssp             HHHHHHHHCCEEEEEGGGGG-----------GSTTEEEEECTTCEEEETTEEEEEEECCSSSSSCEEEEE--GGGTEEEE
T ss_pred             HHHHHHHCCCEEEEECCCCC-----------CCCCCCEEECCCCEEEECCEEEEEEECCCCCCCCEEEEE--CCCCEEEE
T ss_conf             89998863983897333224-----------587898783489736788878999972798877568997--57537885


Q ss_pred             CCCEE
Q ss_conf             34024
Q gi|254780869|r  164 GDWKL  168 (559)
Q Consensus       164 GDfk~  168 (559)
                      ||.-|
T Consensus       130 GDtlf  134 (254)
T 1xm8_A          130 GDTMF  134 (254)
T ss_dssp             ETTEE
T ss_pred             CCEEE
T ss_conf             68887


No 40 
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 2bfz_A 2bg6_A 2bga_A ...
Probab=99.26  E-value=3e-11  Score=98.41  Aligned_cols=141  Identities=18%  Similarity=0.276  Sum_probs=97.8

Q ss_pred             EEECCCCCC--CCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH-HHCCCEEEEECCCCCCCCCH
Q ss_conf             994068683--466069999517778648999776767888767502870795798766-41246899605430121607
Q gi|254780869|r    8 FLPLGGVGE--IGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE-RKNLMAIFITHAHEDHYGAL   84 (559)
Q Consensus         8 ~~~lGG~~e--iG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~-~~~i~~i~iTH~H~DHiGal   84 (559)
                      +..+|....  ++.||++++    .++..+|||+|........     +   .+++.+. ..+++.||+||+|.||+|++
T Consensus        28 ~~~~~~~~~~~~~~N~~~I~----~~~~~vlID~g~~~~~~~~-----l---~~~i~~~~~~~v~~ii~TH~H~DH~gg~   95 (227)
T 1mqo_A           28 HTELGSFNGEAVPSNGLVLN----TSKGLVLVDSSWDDKLTKE-----L---IEMVEKKFQKRVTDVIITHAHADRIGGI   95 (227)
T ss_dssp             EEEEEEETTEEEEEEEEEEE----ETTEEEEESCCSSHHHHHH-----H---HHHHHHHHTSCEEEEECCCCSHHHHTTH
T ss_pred             EEECCCCCCCEEEEEEEEEE----ECCEEEEEECCCCHHHHHH-----H---HHHHHHHCCCCEEEEEECCCCHHHHCHH
T ss_conf             96036667961514899999----7999899949899899999-----9---9999974499816999678981023539


Q ss_pred             HHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEEC--CCCCCCCCEEEEEECCCEEEE
Q ss_conf             888986299779299999999999985488655622551755557763489999855--677776535679876817998
Q gi|254780869|r   85 HDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV--NHSIPETMALVIRSPVGNIVH  162 (559)
Q Consensus        85 p~l~~~~~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~--~Hsip~a~~~~I~t~~g~i~y  162 (559)
                      +++... .++++++..+...+...      ........+..++.+..|+.++..+..  +|+ |++.++.  .|..+++|
T Consensus        96 ~~~~~~-~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~g~~~~~~~~~~pgHt-~~~~~~~--~~~~~vl~  165 (227)
T 1mqo_A           96 KTLKER-GIKAHSTALTAELAKKN------GYEEPLGDLQTVTNLKFGNMKVETFYPGKGHT-EDNIVVW--LPQYNILV  165 (227)
T ss_dssp             HHHHHH-TCEEECBHHHHHHHHHT------TCCCCCCCBCSEEEEEETTEEEEEECCCCSSS-SSCCEEE--ETTTTEEE
T ss_pred             HHHHHC-CCEEEEECHHHHHHHHC------CCCCCCCCCCCCCEEECCCEEEEEEECCCCCC-CCCEEEE--ECCCCEEE
T ss_conf             999747-99899941023333212------54443321256745641880788882279877-8845887--06788599


Q ss_pred             CCCCEECC
Q ss_conf             33402467
Q gi|254780869|r  163 TGDWKLDD  170 (559)
Q Consensus       163 tGDfk~d~  170 (559)
                      +||.-+..
T Consensus       166 ~GD~i~~~  173 (227)
T 1mqo_A          166 GGCLVKST  173 (227)
T ss_dssp             EETTSCCT
T ss_pred             EEEEECCC
T ss_conf             60085679


No 41 
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=99.25  E-value=3.5e-12  Score=105.10  Aligned_cols=142  Identities=19%  Similarity=0.142  Sum_probs=76.7

Q ss_pred             CCCCEEEEEEECCCCCCEEEEEECCCCCCCCCC-----CCE---EEECCCHHHHHHH---HHCCCEEEEECCCCCCCCCH
Q ss_conf             346606999951777864899977676788876-----750---2870795798766---41246899605430121607
Q gi|254780869|r   16 EIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDL-----PGV---DLVFPDITFIMKE---RKNLMAIFITHAHEDHYGAL   84 (559)
Q Consensus        16 eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~-----~gi---d~iiPd~~~l~~~---~~~i~~i~iTH~H~DHiGal   84 (559)
                      +++.||++++    ..+..+|||+|+.-.....     .++   +.+   .+.|.+.   .++|+.||+||+|.||+|++
T Consensus        45 ~~~~~~~LI~----~~~~~iLiDtG~g~~~~~~~~~~~~~~~~~~~l---~~~L~~~G~~p~dId~VilTH~H~DH~Ggl  117 (280)
T 3esh_A           45 NLPTHPILIQ----TAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHI---IADLANYNLTPKDIDYVLMTHMHFDHAAGL  117 (280)
T ss_dssp             EEECCCEEEE----CSSCEEESCCTTCSSCSCHHHHHHTTCSSCCCH---HHHHHTTTCCTTSCCEEECSCCCHHHHGGG
T ss_pred             EEEEEEEEEE----ECCEEEEEECCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHCCCCHHHCCEEECCCCCCCCCCCH
T ss_conf             6678899999----299059996289962235532333577631069---999998499979998997678966545880


Q ss_pred             HHHHHH--C-CCCEECCHHHHHHHHHH-HHH-CCCCC------CCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEE
Q ss_conf             888986--2-99779299999999999-985-48865------5622551755557763489999855677776535679
Q gi|254780869|r   85 HDLWSF--L-HVPVYASPFAIGLLEAK-RVY-ERVSK------KIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVI  153 (559)
Q Consensus        85 p~l~~~--~-~~pIY~s~~t~~li~~~-~~~-~~~~~------~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I  153 (559)
                      ......  + +...|..+......... ... .....      ...+..++.+..+ ..++++.+-| +| .||++++.+
T Consensus       118 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gi~vi~tP-GH-TpGh~~~~v  194 (280)
T 3esh_A          118 TDQAGHAIFENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNKLILFEKHFEP-VPGIKMQHSG-GH-SFGHTIITI  194 (280)
T ss_dssp             SCTTSCCSSTTCEEEEEHHHHHHHHSCCTTGGGTSCGGGCCGGGGGEEEESSEECS-STTEEEEECC-SS-STTCEEEEE
T ss_pred             HHCCCCCCCCCCEEEECHHHHHHHCCCCHHHCCCCCCCCCCCCCCCEEECCCCEEE-CCCCEEEECC-CC-CCCCEEEEE
T ss_conf             00247515787689950146422028231220232112344333523531488076-4886798559-98-988889999


Q ss_pred             EECCCEEEECCCCE
Q ss_conf             87681799833402
Q gi|254780869|r  154 RSPVGNIVHTGDWK  167 (559)
Q Consensus       154 ~t~~g~i~ytGDfk  167 (559)
                      ++++++++||||.-
T Consensus       195 ~~~~~~vlf~GD~~  208 (280)
T 3esh_A          195 ESQGDKAVHMGDIF  208 (280)
T ss_dssp             EETTEEEEECGGGS
T ss_pred             EECCCEEEEEEECC
T ss_conf             95991799998243


No 42 
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- lactamase superfamily; 1.45A {Salmonella typhimurium LT2} SCOP: d.157.1.2
Probab=99.22  E-value=1.4e-10  Score=93.56  Aligned_cols=131  Identities=19%  Similarity=0.251  Sum_probs=94.2

Q ss_pred             CCCCEEEEEECCCCCCCCCE-EEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCC
Q ss_conf             98863999940686834660-69999517778648999776767888767502870795798766412468996054301
Q gi|254780869|r    1 MKNEELVFLPLGGVGEIGMN-MALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHED   79 (559)
Q Consensus         1 m~~~~i~~~~lGG~~eiG~N-~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~D   79 (559)
                      |..-+|..+|.  ...   | +|++.  . ..++.++||.|-     .    +   +-.++++++.-++.+|++||+|.|
T Consensus         5 ~~~~~i~~iP~--~~D---Ny~Yli~--~-~~~~avvIDPg~-----~----~---~il~~l~~~~~~l~~Il~TH~H~D   64 (258)
T 2qed_A            5 IGSMNLNSIPA--FQD---NYIWVLT--N-DEGRCVIVDPGE-----A----A---PVLKAIAEHKWMPEAIFLTHHHHD   64 (258)
T ss_dssp             --CCEEEEEEE--TTT---EEEEEEE--C-TTSEEEEECCSC-----H----H---HHHHHHHHHTCEEEEEECCSCCHH
T ss_pred             CCCCEEEEEEE--ECC---EEEEEEE--E-CCCEEEEECCCC-----C----H---HHHHHHHHCCCEEEEEEECCCCCC
T ss_conf             65777999600--437---5899999--3-897099986987-----5----9---999999976990579993799987


Q ss_pred             CCCCHHHHHHHCCCC-EECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCC
Q ss_conf             216078889862997-7929999999999998548865562255175555776348999985567777653567987681
Q gi|254780869|r   80 HYGALHDLWSFLHVP-VYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVG  158 (559)
Q Consensus        80 HiGalp~l~~~~~~p-IY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g  158 (559)
                      |+|+++.+...+..+ +|+....             ........++.++++++|+++++.+.+..-.||+++|.+    +
T Consensus        65 Hi~g~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~l~dgd~i~iG~~~~~vihTPGHT~g~v~~~~----~  127 (258)
T 2qed_A           65 HVGGVKELLQHFPQMTVYGPAET-------------QDKGATHLVGDGDTIRVLGEKFTLFATPGHTLGHVCYFS----R  127 (258)
T ss_dssp             HHTTHHHHHHHCTTCEEEECGGG-------------GGGTCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEE----T
T ss_pred             CCCCHHHHHHHHCCEEEECCCCC-------------CCCCCCEEECCCCEEEECCEEEEEEECCCCCCCCEEEEE----C
T ss_conf             65533554443202145215433-------------345541464058678768845799967899988667873----2


Q ss_pred             EEEECCCCEE
Q ss_conf             7998334024
Q gi|254780869|r  159 NIVHTGDWKL  168 (559)
Q Consensus       159 ~i~ytGDfk~  168 (559)
                      ..+||||.-|
T Consensus       128 ~~lFtGDtLF  137 (258)
T 2qed_A          128 PYLFCGDTLF  137 (258)
T ss_dssp             TEEEEETTEE
T ss_pred             CEEEECCCCC
T ss_conf             4056078130


No 43 
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrolase; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A*
Probab=99.20  E-value=6.5e-11  Score=95.94  Aligned_cols=141  Identities=21%  Similarity=0.274  Sum_probs=91.7

Q ss_pred             CEEEEEECCCCCCCCCE-EEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH---------HHCCCEEEE
Q ss_conf             63999940686834660-69999517778648999776767888767502870795798766---------412468996
Q gi|254780869|r    4 EELVFLPLGGVGEIGMN-MALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE---------RKNLMAIFI   73 (559)
Q Consensus         4 ~~i~~~~lGG~~eiG~N-~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~---------~~~i~~i~i   73 (559)
                      -++.++|.  ..+   | +|++.  .+..++.++||.|.   +.+        |=+++++++         .-++.+|++
T Consensus        29 ~~v~~iP~--l~D---NysYLI~--d~~t~ea~vIDPg~---d~~--------~il~~i~~~~~~~~~~~~~l~l~~ILl   90 (311)
T 2p18_A           29 FSVTVVPT--LKD---NFSYLIN--DHTTHTLAAVDVNA---DYK--------PILTYIEEHLKQQGNADVTYTFSTILS   90 (311)
T ss_dssp             EEEEEEEE--TTT---EEEEEEE--ETTTTEEEEESCCS---CCH--------HHHHHHHHTC--------CCEEEEEEE
T ss_pred             EEEEEEEE--CCC---EEEEEEE--ECCCCEEEEEECCC---CHH--------HHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf             08999500--064---2899999--89999799991898---618--------999999998875311236976879982


Q ss_pred             ECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEE
Q ss_conf             05430121607888986299779299999999999985488655622551755557763489999855677776535679
Q gi|254780869|r   74 THAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVI  153 (559)
Q Consensus        74 TH~H~DHiGalp~l~~~~~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I  153 (559)
                      ||+|.||+||+..|...++.+.+..+...      ..............++.++.+++|+++++++.+..-.||+.+|.+
T Consensus        91 TH~H~DHigG~~~L~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~dgd~i~~G~~~l~vi~tPGHT~ghv~~~~  164 (311)
T 2p18_A           91 THKHWDHSGGNAKLKAELEAMNSTVPVVV------VGGANDSIPAVTKPVREGDRVQVGDLSVEVIDAPCHTRGHVLYKV  164 (311)
T ss_dssp             SSSSHHHHTTHHHHHHHHHSCC--CCCEE------EEEGGGTCTTCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCEEE------ECCHHCCCCCCCEEECCCCEEEECCEEEEEEEECCCCCCCEEEEE
T ss_conf             78887225249999998478532231034------113110687784662489705799999999864455776369998


Q ss_pred             EEC----CCEEEECCCCEE
Q ss_conf             876----817998334024
Q gi|254780869|r  154 RSP----VGNIVHTGDWKL  168 (559)
Q Consensus       154 ~t~----~g~i~ytGDfk~  168 (559)
                      +.+    ++.++||||.-|
T Consensus       165 ~~~~~~~~~~~lFtGDtlF  183 (311)
T 2p18_A          165 QHPQHPNDGVALFTGDTMF  183 (311)
T ss_dssp             ECTTCGGGCEEEEEETTEE
T ss_pred             CCCCCCCCCCEEEECCEEC
T ss_conf             4677776466799899952


No 44 
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A*
Probab=99.19  E-value=2.3e-10  Score=92.06  Aligned_cols=132  Identities=17%  Similarity=0.161  Sum_probs=94.5

Q ss_pred             EEEEEECCCCCCCCCE-EEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf             3999940686834660-699995177786489997767678887675028707957987664124689960543012160
Q gi|254780869|r    5 ELVFLPLGGVGEIGMN-MALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGA   83 (559)
Q Consensus         5 ~i~~~~lGG~~eiG~N-~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGa   83 (559)
                      +|..+|.  ..+   | +|++.  .+..++.++||.|-     .    +   +-.++++++.-++.+|++||+|.||++|
T Consensus         2 ~i~~ip~--l~D---NysYli~--d~~t~~a~vIDP~~-----~----~---~i~~~~~~~~l~l~~Il~TH~H~DHi~g   62 (260)
T 1qh5_A            2 KVEVLPA--LTD---NYMYLVI--DDETKEAAIVDPVQ-----P----Q---KVVDAARKHGVKLTTVLTTHHHWDHAGG   62 (260)
T ss_dssp             EEEEEEE--TTT---EEEEEEE--ETTTTEEEEESCSS-----H----H---HHHHHHHHHTCEEEEEECCCSSHHHHTT
T ss_pred             EEEEEEE--ECC---EEEEEEE--ECCCCEEEEEECCC-----C----H---HHHHHHHHCCCEEEEEEECCCCHHHHCC
T ss_conf             5789410--342---6899999--89999899990898-----8----9---9999999779968899947898567510


Q ss_pred             HHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECC---CEE
Q ss_conf             78889862997792999999999999854886556225517555577634899998556777765356798768---179
Q gi|254780869|r   84 LHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPV---GNI  160 (559)
Q Consensus        84 lp~l~~~~~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~---g~i  160 (559)
                      ++.|......++|...             ..........+..++.+++|+++++.+.+..-.||++.|.+.-++   ..+
T Consensus        63 ~~~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~gd~~~~g~~~~~vi~TPGHT~gsv~~~~~~~~~~~~~~  129 (260)
T 1qh5_A           63 NEKLVKLESGLKVYGG-------------DDRIGALTHKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPA  129 (260)
T ss_dssp             HHHHHHHSTTCEEEES-------------CTTSTTCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEEECSSSSSCCE
T ss_pred             HHHHHCCCCCCEECCC-------------CCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCEEEEECCCCCCCCCE
T ss_conf             4431011577244133-------------345653322366773899899999999845888885789984788875651


Q ss_pred             EECCCCEE
Q ss_conf             98334024
Q gi|254780869|r  161 VHTGDWKL  168 (559)
Q Consensus       161 ~ytGDfk~  168 (559)
                      +||||.-|
T Consensus       130 lFtGDtLF  137 (260)
T 1qh5_A          130 VFTGDTLF  137 (260)
T ss_dssp             EEEETTEE
T ss_pred             EEECCCEE
T ss_conf             78557443


No 45 
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
Probab=99.19  E-value=8.2e-11  Score=95.24  Aligned_cols=134  Identities=19%  Similarity=0.204  Sum_probs=87.5

Q ss_pred             CCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC
Q ss_conf             68683466069999517778648999776767888767502870795798766412468996054301216078889862
Q gi|254780869|r   12 GGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFL   91 (559)
Q Consensus        12 GG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~   91 (559)
                      .|.+-.+.|++++.    .++..+|||.|..-..     ++.   -..++.+...+|++||+||+|.||+|++.++... 
T Consensus        26 ~~~~~~~~N~~~i~----~~~~~vliDtg~~~~~-----~~~---~~~~i~~~~~~i~~ii~TH~H~DH~gg~~~l~~~-   92 (228)
T 1jjt_A           26 NGWGVVPKHGLVVL----VNAEAYLIDTPFTAKD-----TEK---LVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSR-   92 (228)
T ss_dssp             TTSCEEEEEEEEEE----ETTEEEEESCCSSHHH-----HHH---HHHHHHTTTCEEEEEECSSSSHHHHTTHHHHHHT-
T ss_pred             CCCEEECCEEEEEE----ECCEEEEEECCCCHHH-----HHH---HHHHHHHCCCCEEEEEECCCCCHHHCHHHHHHHC-
T ss_conf             87514885799999----8999999979899899-----999---9999996599857999789980010809999867-


Q ss_pred             CCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEE--ECCCCCCCCCEEEEEECCCEEEECCCCEE
Q ss_conf             997792999999999999854886556225517555577634899998--55677776535679876817998334024
Q gi|254780869|r   92 HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESV--RVNHSIPETMALVIRSPVGNIVHTGDWKL  168 (559)
Q Consensus        92 ~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~--~~~Hsip~a~~~~I~t~~g~i~ytGDfk~  168 (559)
                      ++|+|+++.+...++...    ...  ... ......+..++-.+..+  .-+|+ ||+..+.  .|+.+++||||+-+
T Consensus        93 ~~~~~a~~~~~~~~~~~~----~~~--~~~-~~~~~~~~~~~~~~~~~~~~~gHt-~~~~~~~--~~~~~ilf~GD~~~  161 (228)
T 1jjt_A           93 SIPTYASELTNELLKKDG----KVQ--ATN-SFSGVNYWLVKNKIEVFYPGPGHT-PDNVVVW--LPERKILFGGCFIK  161 (228)
T ss_dssp             TCCEEEEHHHHHHHHHTT----CCC--CSE-EECSSCCEEETTTEEEECCCCSSS-TTCCEEE--ETTTTEEEEETTCC
T ss_pred             CCCEEECHHHHHHHHHCC----CCC--CCC-CCCCCEEEECCCEEEEEEECCCCC-CCCEEEE--ECCCCEEEECCCCC
T ss_conf             998887466777776313----421--122-357735996896899998279999-9969999--34756388577726


No 46 
>3kl7_A Putative metal-dependent hydrolase; structural genomics, joint center for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}
Probab=99.18  E-value=2.2e-09  Score=84.89  Aligned_cols=183  Identities=14%  Similarity=0.123  Sum_probs=106.1

Q ss_pred             CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHH-HHHHCCCCEE
Q ss_conf             660699995177786489997767678887675028707957987664124689960543012160788-8986299779
Q gi|254780869|r   18 GMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHD-LWSFLHVPVY   96 (559)
Q Consensus        18 G~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~-l~~~~~~pIY   96 (559)
                      |-+|.++++    ++..||+|--...+.            +.    ...++++|||||+|.||++.-.. .+.+.+++||
T Consensus        36 Ghas~lie~----~g~~ILiDP~~~~~~------------~~----~~p~iD~VLiTH~H~DH~~~~~l~~~~~~~~~vi   95 (235)
T 3kl7_A           36 KHGSLMLTY----DNHSIQVDPVSEYAD------------YT----TFPKADIILITHEHGDHLDPKAIQAVEKSDTEII   95 (235)
T ss_dssp             ETTEEEEEE----TTEEEEESCCTTTCC------------TT----SSCCCSEEEECCSSTTTCCHHHHHHHCCTTCEEE
T ss_pred             ECCEEEEEE----CCEEEEECCCCCCCC------------HH----CCCCCCEEEECCCCCCCCCCHHHHHHHCCCCEEE
T ss_conf             315999998----999999889999886------------20----0898889997998701267220124642696698


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCC---------CCCEEEEEECCCEEEECCCCE
Q ss_conf             29999999999998548865562255175555776348999985567777---------653567987681799833402
Q gi|254780869|r   97 ASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIP---------ETMALVIRSPVGNIVHTGDWK  167 (559)
Q Consensus        97 ~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip---------~a~~~~I~t~~g~i~ytGDfk  167 (559)
                      +++.+...+..           .......+....++.++|+.+++.|+.+         .+.||+|+.++.+|+|+||-.
T Consensus        96 ~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~I~~~p~~h~~~~~~~~~~~~~~~gyvie~~g~~i~~~GDt~  164 (235)
T 3kl7_A           96 ANENSQKKLGK-----------GKVLKNGDTDTSISYMKIEAVPAYNTTPGRDKYHPRHRDNGYILTFDGLRVYIAGDTE  164 (235)
T ss_dssp             ECHHHHHHHTC-----------SEECCTTCEECCSTTCEEEEEECCCCSTTGGGTSCTTTSEEEEEEETTEEEEECCSCC
T ss_pred             ECHHHHHHHHH-----------CCCCCCCCCEEEECCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCC
T ss_conf             15899877510-----------6420257732775572067897341578766767875337789997997999945867


Q ss_pred             ECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE-CHHHHHHHHHHHHH
Q ss_conf             46776654238988998608788299996356457888777787999999999862798399994-14778999999999
Q gi|254780869|r  168 LDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTT-FSSSVSRIRSIIDI  246 (559)
Q Consensus       168 ~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~-fasni~Ri~~i~~~  246 (559)
                      .        .   ..+.+++  .+|+++..-.   . ..+.+-.+..+    +++.-+-+++|++ |..  .++.++.++
T Consensus       165 ~--------~---~e~~~~~--~iDv~~lpig---~-~~~m~~~~A~~----~~~~l~pk~viP~H~~~--~~~~~~~~~  221 (235)
T 3kl7_A          165 D--------I---PEMKDLK--DIDIAFLPVN---Q-PYTMTVSQAAK----AARMFSPKILYPYHYGD--TKIGELKDA  221 (235)
T ss_dssp             S--------C---GGGGGCC--SCSEEEEECC---T-TTSCCHHHHHH----HHHHHCCSEEEEESCTT--CCTTHHHHH
T ss_pred             C--------H---HHHHHCC--CCCEEEECCC---C-CCCCCHHHHHH----HHHHCCCCEEEEECCCC--CCHHHHHHH
T ss_conf             7--------5---7775126--9879997679---9-77579999999----99972999999956899--888999999


Q ss_pred             HHHHCCEE
Q ss_conf             98718869
Q gi|254780869|r  247 AEQIGRKI  254 (559)
Q Consensus       247 a~~~~R~v  254 (559)
                      +++.|-++
T Consensus       222 ~~~~g~~~  229 (235)
T 3kl7_A          222 LKDSGIDV  229 (235)
T ss_dssp             TTTSCCEE
T ss_pred             HHHCCCCE
T ss_conf             98669961


No 47 
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center, quorum quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Probab=99.16  E-value=2.3e-10  Score=92.02  Aligned_cols=142  Identities=11%  Similarity=0.058  Sum_probs=80.9

Q ss_pred             CCCEEEEEEECCCCCCEEEEEECCCCC--CCC-CCCC----E--EEECCCH----HHHHHH---HHCCCEEEEECCCCCC
Q ss_conf             466069999517778648999776767--888-7675----0--2870795----798766---4124689960543012
Q gi|254780869|r   17 IGMNMALYGYGSPSSRKWIMIDCGVSF--PKD-DLPG----V--DLVFPDI----TFIMKE---RKNLMAIFITHAHEDH   80 (559)
Q Consensus        17 iG~N~~~~~~~~~~~~~~iiiD~G~~f--p~~-~~~g----i--d~iiPd~----~~l~~~---~~~i~~i~iTH~H~DH   80 (559)
                      +..||++++    ..+.++|||+|+.-  ... ....    .  -.+.+.-    +.|++.   .++|+.|++||+|.||
T Consensus        41 ~pv~~~LI~----~~~g~iLvDtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~p~dI~~VilTH~H~DH  116 (276)
T 2r2d_A           41 IPVSAYLIQ----CTDATVLYDTGCHPECMGTNGRWPAQSQLNAPYIGASECNLPERLRQLGLSPDDISTVVLSHLHNDH  116 (276)
T ss_dssp             EEEEEEEEE----CSSCEEEECCCSCTTCSSTTCSSCHHHHHHSCBCCCTTCSHHHHHHHTTCCGGGCSEEECSCCSTTT
T ss_pred             EEEEEEEEE----ECCEEEEEECCCCHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCHHHCCEEECCCCCCCC
T ss_conf             665899999----4990499957888455124333430222115545653202999999839997999899847996042


Q ss_pred             CCCHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCC-------------CCEE-EECCCCEEEECC-EEEEEEECCCCC
Q ss_conf             1607888986299779299999999999985488655-------------6225-517555577634-899998556777
Q gi|254780869|r   81 YGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKK-------------IPCI-SFQAGDKVDVGA-FSIESVRVNHSI  145 (559)
Q Consensus        81 iGalp~l~~~~~~pIY~s~~t~~li~~~~~~~~~~~~-------------~~~~-~i~~~~~~~~g~-~~v~~~~~~Hsi  145 (559)
                      +|+++++   -+.+||+++..................             .... .........+++ +.+-.+.-+| .
T Consensus       117 ~Ggl~~f---~~a~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~pGH-T  192 (276)
T 2r2d_A          117 AGCVEYF---GKSRLIAHEDEFATAVRYFATGDHSSPYIVKDIEAWLATPRNWDLVGRDERERELAPGVNLLNFGTGH-A  192 (276)
T ss_dssp             STTGGGC---SSSEEEEEHHHHHHHHHHHHTTCCSSSSCHHHHHHHTTSCCCEEEECTTCCEEEEETTEEEEEEESSS-S
T ss_pred             CCCCCCC---CCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCEEECCCCCEEEECCEEEEECCCCC-C
T ss_conf             3741357---86300038999998640123443345300455433104444565551268825970997886688998-7


Q ss_pred             CCCCEEEEEEC-CCEEEECCCC
Q ss_conf             76535679876-8179983340
Q gi|254780869|r  146 PETMALVIRSP-VGNIVHTGDW  166 (559)
Q Consensus       146 p~a~~~~I~t~-~g~i~ytGDf  166 (559)
                      ||++++.++++ ++.++++||.
T Consensus       193 pGh~~~~v~~~~~~~vl~~GD~  214 (276)
T 2r2d_A          193 SGMLGLAVRLEKQPGFLLVSDA  214 (276)
T ss_dssp             SSEEEEEEECSSSCEEEEEETT
T ss_pred             CCCEEEEEEECCCCEEEEEECC
T ss_conf             1068999995799979999586


No 48 
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistance, structure, hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=99.15  E-value=5.8e-10  Score=89.12  Aligned_cols=139  Identities=12%  Similarity=0.110  Sum_probs=89.3

Q ss_pred             CCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH-HHCCCEEEEECCCCCCCCCHHHHHHHCCCCE
Q ss_conf             466069999517778648999776767888767502870795798766-4124689960543012160788898629977
Q gi|254780869|r   17 IGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE-RKNLMAIFITHAHEDHYGALHDLWSFLHVPV   95 (559)
Q Consensus        17 iG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~-~~~i~~i~iTH~H~DHiGalp~l~~~~~~pI   95 (559)
                      -..|++++..   .++..+|+|.|.. +..    .+.+   ..++++. ..++.+|++||+|.||+|+++++. ..+++|
T Consensus        28 ~~~n~~~i~~---~dg~viliD~~~~-~~~----~~~l---~~~~~~~~~~~v~~II~TH~H~DH~Gg~~~~~-~~~~~i   95 (246)
T 2fhx_A           28 YSSNVLVAKM---LDGTVVIVSSPFE-NLG----TQTL---MDWVAKTMKPKKVVAINTHFHLDGTGGNEIYK-KMGAET   95 (246)
T ss_dssp             TTEEEEEEEC---TTSEEEEESCCSS-HHH----HHHH---HHHHHHHHCCSEEEEECCSSSHHHHTTHHHHH-HTTCEE
T ss_pred             CCCEEEEEEC---CCCEEEEECCCCC-HHH----HHHH---HHHHHHHCCCCEEEEEECCCCCCCCCCHHHHC-CCCCEE
T ss_conf             7614999993---8987999999999-899----9999---99999745996699997999965348888852-479658


Q ss_pred             ECCHHHHHHHHHHHH--------------------HCCCCCCCCEEEECCCCEEEECCEEEEEEEC--CCCCCCCCEEEE
Q ss_conf             929999999999998--------------------5488655622551755557763489999855--677776535679
Q gi|254780869|r   96 YASPFAIGLLEAKRV--------------------YERVSKKIPCISFQAGDKVDVGAFSIESVRV--NHSIPETMALVI  153 (559)
Q Consensus        96 Y~s~~t~~li~~~~~--------------------~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~--~Hsip~a~~~~I  153 (559)
                      |+++.+..++.....                    ............++.+..+.+|+..++++..  +| .|+.  +.+
T Consensus        96 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~gh-t~~~--~~~  172 (246)
T 2fhx_A           96 WSSDLTKQLRLEENKKDRIKAAEFYKNEDLKRRILSSHPVPADNVFDLKQGKVFSFSNELVEVSFPGPAH-SPDN--VVV  172 (246)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTCCCCCSEEECTTTCEEEEETTEEEEEECCCCSS-STTC--CEE
T ss_pred             EECHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCEEEEEEECCCCC-CCCC--EEE
T ss_conf             8538888998860200001234430111100023566665788607737998999799456764137865-6783--368


Q ss_pred             EECCCEEEECCCCEECC
Q ss_conf             87681799833402467
Q gi|254780869|r  154 RSPVGNIVHTGDWKLDD  170 (559)
Q Consensus       154 ~t~~g~i~ytGDfk~d~  170 (559)
                      ..++.+++|+||.-+..
T Consensus       173 ~~~~~~vl~~GD~~~~~  189 (246)
T 2fhx_A          173 YFPKKKLLFGGCMIKPK  189 (246)
T ss_dssp             EETTTTEEEEETTCCSS
T ss_pred             EECCCCEEEEECEECCC
T ss_conf             84789999992761789


No 49 
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; 2.10A {Thermoanaerobacter tengcongensis MB4}
Probab=99.04  E-value=2.5e-09  Score=84.62  Aligned_cols=70  Identities=27%  Similarity=0.347  Sum_probs=49.8

Q ss_pred             CCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHH---HHHCCCEEEEECCCCCCCCCHHHHHHHC
Q ss_conf             8346606999951777864899977676788876750287079579876---6412468996054301216078889862
Q gi|254780869|r   15 GEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMK---ERKNLMAIFITHAHEDHYGALHDLWSFL   91 (559)
Q Consensus        15 ~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~---~~~~i~~i~iTH~H~DHiGalp~l~~~~   91 (559)
                      +|=| ||++++    .++..+|||||..   ..      +   .+.|++   ..++|++||+||.|.||+|+|+.++...
T Consensus        30 ~~~G-~S~LIe----~~~~~iLID~G~~---~~------~---~~~l~~~gi~~~~Id~I~iTH~H~DHigGL~~ll~~~   92 (284)
T 2p4z_A           30 AEHG-LSLLLK----KGNKEIVVDTGQS---EN------F---IKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLERN   92 (284)
T ss_dssp             BCSS-CEEEEE----ETTEEEEECCCSS---TH------H---HHHHHHTTCCGGGCCEEECCCSCHHHHTTHHHHHHHC
T ss_pred             CCCE-EEEEEE----ECCEEEEEECCCC---HH------H---HHHHHHCCCCHHHCCEEEECCCCHHHCCCCHHHHHHC
T ss_conf             4747-899999----8996899907999---79------9---9999984999789989997464354317766788645


Q ss_pred             -CCCEECCHHH
Q ss_conf             -9977929999
Q gi|254780869|r   92 -HVPVYASPFA  101 (559)
Q Consensus        92 -~~pIY~s~~t  101 (559)
                       ..++|+++.+
T Consensus        93 ~~~~~~~~~~~  103 (284)
T 2p4z_A           93 PEVKIYTHKEI  103 (284)
T ss_dssp             TTCEEEEEGGG
T ss_pred             CCCCCCCCHHH
T ss_conf             56654447656


No 50 
>1ztc_A Hypothetical protein TM0894; structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11
Probab=98.99  E-value=3e-11  Score=98.40  Aligned_cols=146  Identities=16%  Similarity=0.145  Sum_probs=82.3

Q ss_pred             CEEEEEECCCCCCCC-------CEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH---HHCCCEEEE
Q ss_conf             639999406868346-------6069999517778648999776767888767502870795798766---412468996
Q gi|254780869|r    4 EELVFLPLGGVGEIG-------MNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE---RKNLMAIFI   73 (559)
Q Consensus         4 ~~i~~~~lGG~~eiG-------~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~---~~~i~~i~i   73 (559)
                      .++.++..|+.-.+.       .||++++.    ++..+|||+|....      .+.+   .+.|++.   .++|++||+
T Consensus        13 m~~~~~~~g~~~~~~~~~~~~~~~~~li~~----~~~~iLIDtG~~~~------~~~l---~~~l~~~g~~~~~I~~Ii~   79 (221)
T 1ztc_A           13 MELKILVTGGNVFVPGRLNAHFSTVVYLEH----KDRRIIIDPGNLSS------MDEL---EEKFSELGISPDDITDVLF   79 (221)
T ss_dssp             EEEEEEECCBEEEETTTEECCBCCEEEEEE----TTEEEEECCCCGGG------HHHH---HHHHHHHTCCGGGCCEEEC
T ss_pred             EEEEEEECCCCEECCCCCCCCCEEEEEEEE----CCEEEEEECCCCCC------HHHH---HHHHHHCCCCHHHCCEEEE
T ss_conf             698999818975458866788237999998----99999991999721------9999---9999984999689849995


Q ss_pred             ECCCCCCCCCHHHHHHHCCCCEECCHHHHHH-------HHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCC
Q ss_conf             0543012160788898629977929999999-------999998548865562255175555776348999985567777
Q gi|254780869|r   74 THAHEDHYGALHDLWSFLHVPVYASPFAIGL-------LEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIP  146 (559)
Q Consensus        74 TH~H~DHiGalp~l~~~~~~pIY~s~~t~~l-------i~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip  146 (559)
                      ||.|.||+|+++++..   ..++.++.....       .......... ....-..+..++....+....-.+..+| .+
T Consensus        80 TH~H~DH~gg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gH-t~  154 (221)
T 1ztc_A           80 THVHLDHIFNSVLFEN---ATFYVHEVYKTKNYLSFGTIVGRIYSKVI-SSWKNVVLLKGEESLFDEKVKVFHTPWH-AR  154 (221)
T ss_dssp             SCCCHHHHGGGGGCTT---CEEEEEGGGGGSCGGGGCHHHHHHHHHHH-HTCCSEEEECSCCEETTTTEEEEECCSS-ST
T ss_pred             CCCCCCCCCCHHHCCC---CCEEEEECHHHHHCCCCCCCCCCCCCCCC-CCCCEEEEECCCEEEECEEEEECCCCCC-CH
T ss_conf             9987244454121046---50554100022210122221100122345-5542289706843760205772478998-83


Q ss_pred             CCCEEEEEEC-CCEEEECCCCE
Q ss_conf             6535679876-81799833402
Q gi|254780869|r  147 ETMALVIRSP-VGNIVHTGDWK  167 (559)
Q Consensus       147 ~a~~~~I~t~-~g~i~ytGDfk  167 (559)
                      +++++.+++. .++++||||.-
T Consensus       155 ~~~~~~~~~~~~~~iLf~GD~~  176 (221)
T 1ztc_A          155 EHLSFLLDTENAGRVLITGDIT  176 (221)
T ss_dssp             TCEEEEEEETTTEEEEECGGGS
T ss_pred             HHEEEEEECCCCCEEEEECCCC
T ss_conf             4776899558996399975678


No 51 
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, seattle structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus}
Probab=98.96  E-value=3.8e-08  Score=76.06  Aligned_cols=79  Identities=25%  Similarity=0.323  Sum_probs=53.8

Q ss_pred             EEEEEEEC-CCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC-----CC
Q ss_conf             06999951-7778648999776767888767502870795798766412468996054301216078889862-----99
Q gi|254780869|r   20 NMALYGYG-SPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFL-----HV   93 (559)
Q Consensus        20 N~~~~~~~-~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~-----~~   93 (559)
                      .+.++++. .+.++..||||||-.|.             .+.+.....++++|||||.|.||+++|+.|+...     ..
T Consensus        64 ~S~li~~~~~~~~~~~iLiD~G~~~~-------------~~~~~~~~~~id~I~lTH~H~DH~~GL~~l~~~~~~~~~~~  130 (293)
T 3md7_A           64 ASLLVERYDAEGNNTVVVIDTGPDFR-------------MQMIDSGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLM  130 (293)
T ss_dssp             CEEEEEEECTTCCEEEEEECCCTTHH-------------HHHHHHTCCCCSEEECSCCCHHHHTTGGGGHHHHHHHTSCE
T ss_pred             CEEEEEECCCCCCCEEEEEECCCCHH-------------HHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf             47999854678997589996881379-------------99864234567789984466444557545444554045553


Q ss_pred             CEECCHHHHHHHHHHHHH
Q ss_conf             779299999999999985
Q gi|254780869|r   94 PVYASPFAIGLLEAKRVY  111 (559)
Q Consensus        94 pIY~s~~t~~li~~~~~~  111 (559)
                      ++|+...+..........
T Consensus       131 ~~~~~~~~~~~~~~~~~~  148 (293)
T 3md7_A          131 DVYANRLTRNRLYDTFGY  148 (293)
T ss_dssp             EEEECHHHHHHHHHHCGG
T ss_pred             CEEEEECCHHHHHCCCCH
T ss_conf             134100110122024300


No 52 
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=98.95  E-value=2.1e-09  Score=85.05  Aligned_cols=136  Identities=13%  Similarity=0.171  Sum_probs=86.4

Q ss_pred             CEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHH-HHHH-HCCCEEEEECCCCCCCCCHHHHHHH-----C
Q ss_conf             6069999517778648999776767888767502870795798-7664-1246899605430121607888986-----2
Q gi|254780869|r   19 MNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFI-MKER-KNLMAIFITHAHEDHYGALHDLWSF-----L   91 (559)
Q Consensus        19 ~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l-~~~~-~~i~~i~iTH~H~DHiGalp~l~~~-----~   91 (559)
                      .||++++    .++.+++||+|........     +   .+.+ ++.. ++|++|++||.|.||+|+...+...     .
T Consensus       123 aN~~~I~----gddG~IVIDtg~s~e~A~a-----a---le~~~~~l~~kPV~aVI~TH~H~DH~GGa~~~~e~~~~~~~  190 (658)
T 2cfu_A          123 ANITFIR----GDSGWIVVDTLTTPATARA-----A---YELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVASG  190 (658)
T ss_dssp             SCEEEEE----CSSSEEEECCCSSHHHHHH-----H---HHHHHHHHCCCCEEEEECSBSCHHHHTTGGGTCCHHHHHTT
T ss_pred             CEEEEEE----ECCEEEEEECCCCHHHHHH-----H---HHHHHHHCCCCCEEEEEECCCCHHHCCCHHHHHCCCCCCCC
T ss_conf             6189999----3998999979999899999-----9---99999865799848999899970105747988135421467


Q ss_pred             CCCEECCHHHHHHHH-----------HHH-HHCCC-CC-----------------------CCCEEEECCCCEEEECCEE
Q ss_conf             997792999999999-----------999-85488-65-----------------------5622551755557763489
Q gi|254780869|r   92 HVPVYASPFAIGLLE-----------AKR-VYERV-SK-----------------------KIPCISFQAGDKVDVGAFS  135 (559)
Q Consensus        92 ~~pIY~s~~t~~li~-----------~~~-~~~~~-~~-----------------------~~~~~~i~~~~~~~~g~~~  135 (559)
                      .+|||++......+.           .+. ...+. .+                       .......+.++.+.+|+.+
T Consensus       191 ~~~IiA~~~~~~~~~~e~~~~~~~~~rRa~~~~g~~lp~~~~g~~~~glg~~~~~~~~~~~~p~~~~~~~~~~l~igG~~  270 (658)
T 2cfu_A          191 AVQIIAPAGFMEAAIKENVLAGNAMMRRATYQYGTQLPKGPQGQVDMAIGKGLARGPLSLLAPTRLIEGEGEDLVLDGVP  270 (658)
T ss_dssp             SSEEEEETTHHHHHC---CTTHHHHHHHHHHHTTTTSCBSTTSBCCCSSSSCCCCSCCCCCCCSEEECTTEEEEEETTEE
T ss_pred             CCEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCEE
T ss_conf             74289734468997630011027788899887632278550104453445676668654358965874152467779989


Q ss_pred             EEEEECC--CCCCCCCEEEEEECCCEEEECCCCEEC
Q ss_conf             9998556--777765356798768179983340246
Q gi|254780869|r  136 IESVRVN--HSIPETMALVIRSPVGNIVHTGDWKLD  169 (559)
Q Consensus       136 v~~~~~~--Hsip~a~~~~I~t~~g~i~ytGDfk~d  169 (559)
                      ++++.+.  | .|+.+.  +..|+.+++++||.-+.
T Consensus       271 ~e~i~tPG~H-Tp~~l~--vy~Pe~kvLf~GD~v~~  303 (658)
T 2cfu_A          271 FTFQNTPGTE-SPAEMN--IWLPRQKALLMAENVVG  303 (658)
T ss_dssp             EEEEECTTSS-SSSBEE--EEETTTTEEECTTTSCS
T ss_pred             EEEEECCCCC-CCCCEE--EEECCCCEEEECCCCCC
T ss_conf             9999768999-877479--99757896874366566


No 53 
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; structural genomics, JCSG, PSI, protein structure initiative; 2.00A {Thermotoga maritima} SCOP: d.157.1.4
Probab=98.95  E-value=4.6e-08  Score=75.50  Aligned_cols=121  Identities=21%  Similarity=0.207  Sum_probs=81.0

Q ss_pred             CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCEEC
Q ss_conf             66069999517778648999776767888767502870795798766412468996054301216078889862997792
Q gi|254780869|r   18 GMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYA   97 (559)
Q Consensus        18 G~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~~~pIY~   97 (559)
                      |-+|.+++.    ++..|++|--...     +|.  -.|+        .++++|++||.|.||...  .++         
T Consensus        19 Ghs~~lIe~----~g~~ILiDP~~~~-----~~~--~~~~--------~~~D~VliSH~H~DH~~~--~~~---------   68 (220)
T 1vjn_A           19 GHACFALEM----EGKTIVTDPFDES-----VGY--PIPN--------VTADVVTESHQHFDHNAH--HLV---------   68 (220)
T ss_dssp             ETTEEEEEE----TTEEEEESCCC------------CCCC--------CBCSEEECSSCC---CGG--GGC---------
T ss_pred             ECCEEEEEE----CCEEEEECCCCCC-----CCC--CCCC--------CCCCEEEECCCCCCCCCH--HHC---------
T ss_conf             031999998----9999998999887-----789--8777--------878899966878676751--231---------


Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCC------CCCEEEEEECCCEEEECCCCEECCC
Q ss_conf             9999999999998548865562255175555776348999985567777------6535679876817998334024677
Q gi|254780869|r   98 SPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIP------ETMALVIRSPVGNIVHTGDWKLDDD  171 (559)
Q Consensus        98 s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip------~a~~~~I~t~~g~i~ytGDfk~d~~  171 (559)
                                         ......+..+..+++++++|+.+++.|+-.      .+++|+|+.++.+|+|+||-     
T Consensus        69 -------------------~~~~~v~~~~g~~~~~~~~I~~v~a~H~~~~~~~~g~~~~~~ie~~g~~I~~~GDt-----  124 (220)
T 1vjn_A           69 -------------------KGNFRVIDRPGAYTVNGVKIKGVETFHDPSHGRERGKNIVFVFEGEGIKVCHLGDL-----  124 (220)
T ss_dssp             -------------------BSSCEEECSSEEEEETTEEEEEEEEEEC-------CEEEEEEEEETTEEEEECTTC-----
T ss_pred             -------------------CCCEEEECCCCEEEECCEEECCCCCEECCCCCCCCCCCEEEEEECCCEEEEEECCC-----
T ss_conf             -------------------46269960456599798221243206518888547875799998499299996898-----


Q ss_pred             CCCCCCCCHHHHHHCCCCCCEEEEEC
Q ss_conf             66542389889986087882999963
Q gi|254780869|r  172 AILGDVTDKDSLCAIGNEGILALMCD  197 (559)
Q Consensus       172 p~~g~~~d~~~l~~~~~~gv~~Li~e  197 (559)
                         +...+...+.++++  +|+++.-
T Consensus       125 ---~~~~~~~~~~~~~~--~Dva~lP  145 (220)
T 1vjn_A          125 ---GHVLTPAQVEEIGE--IDVLLVP  145 (220)
T ss_dssp             ---CSCCCHHHHHHHCC--CSEEEEE
T ss_pred             ---CCCCCHHHHHHHCC--CCEEEEE
T ss_conf             ---88989999985289--7689994


No 54 
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=98.53  E-value=1.5e-06  Score=64.55  Aligned_cols=52  Identities=31%  Similarity=0.459  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHH----HHHCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf             68346606999951777864899977676788876750287079579876----64124689960543012160788898
Q gi|254780869|r   14 VGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMK----ERKNLMAIFITHAHEDHYGALHDLWS   89 (559)
Q Consensus        14 ~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~----~~~~i~~i~iTH~H~DHiGalp~l~~   89 (559)
                      ..|-|-++++     +.    ||+|||..   .            .++++    +.+.+++|||||.|.||+|+++.|+.
T Consensus        28 ~~e~G~s~~i-----e~----iL~D~G~~---~------------~~~~n~~~lgId~~daV~lTH~H~DH~gGl~~L~~   83 (267)
T 3h3e_A           28 ESEHGFSVLV-----DS----VLFDTGKS---D------------VFLKNARKLGIDLPKDVLISHGHYDHAGGLLYLSG   83 (267)
T ss_dssp             CCCSSCEEEE-----TT----EEECCCSS---S------------HHHHHHHHTTCCCCSEEECSCSCHHHHGGGGGCCS
T ss_pred             CCCCEEEEEE-----CC----EEEECCCC---H------------HHHHHHHHCCCCHHHCEEEECCCHHHCCCHHHHHH
T ss_conf             1462255444-----52----89979999---7------------99999998499846848981455311078899987


No 55 
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12
Probab=98.53  E-value=3.5e-07  Score=69.12  Aligned_cols=121  Identities=15%  Similarity=0.120  Sum_probs=77.7

Q ss_pred             CCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCC
Q ss_conf             83466069999517778648999776767888767502870795798766412468996054301216078889862997
Q gi|254780869|r   15 GEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVP   94 (559)
Q Consensus        15 ~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~~~p   94 (559)
                      ...+.|||++.    ..+..++||+|-.   .+.        ...+|.+. ..++.|++||.|  |+|++..+...+++|
T Consensus        20 ~~~~~n~~lv~----~~~g~vlIDp~~~---~~~--------~~~~l~~~-g~v~~iv~TH~d--H~g~~~~~~~~~~a~   81 (201)
T 2p97_A           20 RNIDFNGFAWI----RPEGNILIDPVAL---SNH--------DWKHLESL-GGVVWIVLTNSD--HVRSAKEIADQTYTK   81 (201)
T ss_dssp             TTEEEEEEEEC----CTTCCEEESCCCC---CHH--------HHHHHHHT-TCCSEEECSSGG--GCTTHHHHHHHSCCE
T ss_pred             CCCCEEEEEEE----ECCEEEEEECCCC---CHH--------HHHHHHHC-CCCEEEEECCHH--HHHHHHHHHHHHCCC
T ss_conf             75230899999----8998599949988---199--------99999856-996499988888--988999999987990


Q ss_pred             EECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEE
Q ss_conf             79299999999999985488655622551755557763489999855677776535679876817998334024
Q gi|254780869|r   95 VYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKL  168 (559)
Q Consensus        95 IY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~  168 (559)
                      ||+++....          ..+......+..++.+..| +++-..|-.| .||++.+..  + .+++||||.-+
T Consensus        82 i~~~~~~~~----------~~~~~~d~~~~dg~~~~~g-~~vi~~pG~H-t~g~v~~~~--~-~~~Lf~GD~l~  140 (201)
T 2p97_A           82 IAGPVAEKE----------NFPIYCDRWLSDGDELVPG-LKVMELQGSK-TPGELALLL--E-ETTLITGDLVR  140 (201)
T ss_dssp             EEEEGGGTT----------SCSSCCSEEECTTCBSSTT-EEEEEECSSS-STTEEEEEE--T-TTEEEECSSEE
T ss_pred             EEECCCCCC----------CCCCCCCEEECCCCEEEEE-EEEEEECCCC-CCCCCCEEE--C-CCEEEECCEEC
T ss_conf             993142133----------3567898884268886501-7999947888-999843330--3-56399898815


No 56 
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=96.43  E-value=0.024  Score=34.39  Aligned_cols=81  Identities=16%  Similarity=0.183  Sum_probs=48.5

Q ss_pred             CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHH
Q ss_conf             3026896699996158861778999997651031134303566641315788978999999754953999704--57799
Q gi|254780869|r  320 VKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIH--GEPLH  397 (559)
Q Consensus       320 i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvH--Ge~rh  397 (559)
                      +.+++||.||+++..-|.       +.+.+...|++++.-|.+.   -|+.-+.++++..+. -+++.+|++|  |-.-.
T Consensus        70 l~~~~gdeVi~~~~t~~a-------~~~~i~~~G~~pvf~Dvd~---~~~~id~~~l~~~it-~~tkaIi~~h~~G~~~d  138 (367)
T 3nyt_A           70 LGVGPGDEVITPGFTYVA-------TAETVALLGAKPVYVDIDP---RTYNLDPQLLEAAIT-PRTKAIIPVSLYGQCAD  138 (367)
T ss_dssp             TTCCTTCEEEEESSSCTH-------HHHHHHHTTCEEEEECBCT---TTCSBCGGGTGGGCC-TTEEEECCBCGGGCCCC
T ss_pred             HCCCCCCEEEECCCCCHH-------HHHHHHHCCCEEEEEECCC---CCCCCCHHHHHHHCC-CCCEEEEEECCCCCHHH
T ss_conf             089994999846866536-------8999998399799994479---868859999997558-26739999478787889


Q ss_pred             HHHHHHHHHHCCCC
Q ss_conf             99999878744786
Q gi|254780869|r  398 LVAHKELALQEGIA  411 (559)
Q Consensus       398 l~~h~~la~~~gv~  411 (559)
                      +.+-.++|++.|+.
T Consensus       139 ~~~I~~~~~~~~i~  152 (367)
T 3nyt_A          139 FDAINAIASKYGIP  152 (367)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHCCCE
T ss_conf             99999999984986


No 57 
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=95.02  E-value=0.082  Score=30.53  Aligned_cols=22  Identities=9%  Similarity=0.193  Sum_probs=8.5

Q ss_pred             CCEEEEECHHHHHHHHHHHHCC
Q ss_conf             8869984486999999887428
Q gi|254780869|r  251 GRKIVLLGSSLKRVVSVAIDVG  272 (559)
Q Consensus       251 ~R~v~i~Grs~~~~~~~a~~~g  272 (559)
                      |-.|.+...+.......+...|
T Consensus        96 gDeVi~p~~~~~~~~~~i~~~g  117 (391)
T 3dr4_A           96 GDEVIVPSLTYIASANSVTYCG  117 (391)
T ss_dssp             TCEEEEESSSCTHHHHHHHHTT
T ss_pred             CCEEEECCCHHHHHHHHHHHCC
T ss_conf             1999989860232107887579


No 58 
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=93.95  E-value=0.32  Score=26.30  Aligned_cols=22  Identities=9%  Similarity=0.237  Sum_probs=9.3

Q ss_pred             CCEEEEECHHHHHHHHHHHHCC
Q ss_conf             8869984486999999887428
Q gi|254780869|r  251 GRKIVLLGSSLKRVVSVAIDVG  272 (559)
Q Consensus       251 ~R~v~i~Grs~~~~~~~a~~~g  272 (559)
                      |-.|.+-.-+......+....|
T Consensus        76 gdeVi~p~~t~~a~~~ai~~~G   97 (373)
T 3frk_A           76 GDEVIVPSNTFIATALAVSYTG   97 (373)
T ss_dssp             TCEEEEETTSCTHHHHHHHHHS
T ss_pred             CCEEEECCCCCHHHHHHHHHCC
T ss_conf             6999967874030132675146


No 59 
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=93.14  E-value=0.43  Score=25.37  Aligned_cols=78  Identities=21%  Similarity=0.237  Sum_probs=27.3

Q ss_pred             CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHH
Q ss_conf             026896699996158861778999997651031134303566641315788978999999754953999704--577999
Q gi|254780869|r  321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIH--GEPLHL  398 (559)
Q Consensus       321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvH--Ge~rhl  398 (559)
                      .+++||.||.++...+.       +.+.+...|++.+.-|.+.   -++.-+.++++..+.- +++.++|||  |-.-.+
T Consensus        99 ~i~~gdeVi~p~~t~~a-------t~~ai~~~G~~pvf~Dv~~---~~~~id~~~l~~~i~~-~tkaIi~vh~~G~~~d~  167 (399)
T 2oga_A           99 GIGPGDEVIVPSHTYIA-------SWLAVSATGATPVPVEPHE---DHPTLDPLLVEKAITP-RTRALLPVHLYGHPADM  167 (399)
T ss_dssp             TCCTTCEEEEESSSCTH-------HHHHHHHTTCEEEEECBCS---SSSSBCHHHHHHHCCT-TEEEECCBCGGGCCCCH
T ss_pred             CCCCCCEEEECCCCHHH-------HHHHHHHHCCCEEEEECCC---CCCCCCHHHHHHHHCC-CCEEEEEECCCCCCCCH
T ss_conf             99994999979934073-------5779986148718962333---1135888999987276-65089852788980036


Q ss_pred             HHHHHHHHHCC
Q ss_conf             99998787447
Q gi|254780869|r  399 VAHKELALQEG  409 (559)
Q Consensus       399 ~~h~~la~~~g  409 (559)
                      .+-.++|++.|
T Consensus       168 ~~i~~i~k~~~  178 (399)
T 2oga_A          168 DALRELADRHG  178 (399)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHCC
T ss_conf             99999999739


No 60 
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=92.41  E-value=0.53  Score=24.70  Aligned_cols=79  Identities=23%  Similarity=0.284  Sum_probs=34.4

Q ss_pred             CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHH
Q ss_conf             026896699996158861778999997651031134303566641315788978999999754953999704--577999
Q gi|254780869|r  321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIH--GEPLHL  398 (559)
Q Consensus       321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvH--Ge~rhl  398 (559)
                      .+++||.||.++-.-+.       +.+.+...|++++.-|.+..   ++.-+.++++..+. -+.|.++|||  |-.-.+
T Consensus        75 ~~~~gdeVi~p~~t~~a-------~~~ai~~~g~~pv~~Di~~~---~~~~d~~~l~~~i~-~~tkaii~~h~~G~~~d~  143 (393)
T 1mdo_A           75 GIGEGDEVITPSMTWVS-------TLNMIVLLGANPVMVDVDRD---TLMVTPEHIEAAIT-PQTKAIIPVHYAGAPADL  143 (393)
T ss_dssp             TCCTTCEEEEESSSCHH-------HHHHHHHTTCEEEEECBCTT---TCCBCHHHHHHHCC-TTEEEECCBCGGGCCCCH
T ss_pred             CCCCCCEEECCCCEEHH-------HHHHHHCCCCEEEEECCCCC---CCCCCHHHHHHHHC-CCCEEEEECCCCCCEECH
T ss_conf             99998989717963131-------13224237978997025432---24588999997407-783499713767833168


Q ss_pred             HHHHHHHHHCCC
Q ss_conf             999987874478
Q gi|254780869|r  399 VAHKELALQEGI  410 (559)
Q Consensus       399 ~~h~~la~~~gv  410 (559)
                      .+-+++|++-|+
T Consensus       144 ~~i~~i~~~~~i  155 (393)
T 1mdo_A          144 DAIYALGERYGI  155 (393)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCC
T ss_conf             999988874295


No 61 
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; X-RAY, aspartate aminotransferase, colitose, perosamine, O- antigen, PLP; HET: G4M; 1.70A {Escherichia coli O55} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=92.19  E-value=0.56  Score=24.52  Aligned_cols=79  Identities=16%  Similarity=0.199  Sum_probs=51.9

Q ss_pred             CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHH
Q ss_conf             026896699996158861778999997651031134303566641315788978999999754953999704--577999
Q gi|254780869|r  321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIH--GEPLHL  398 (559)
Q Consensus       321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvH--Ge~rhl  398 (559)
                      .+++||.||.++-.-|.       +.+.+...|++++.-|.+..   +..-+.++++..+. -+++-++|||  |-.-.+
T Consensus        76 ~~~~gdeVi~p~~t~~a-------t~~ai~~~G~~pv~~Did~~---t~~id~~~l~~~i~-~~tkaIi~vh~~G~~~d~  144 (390)
T 3b8x_A           76 RLKKGDEIIVPAVSWST-------TYYPLQQYGLRVKFVDIDIN---TLNIDIESLKEAVT-DSTKAILTVNLLGNPNNF  144 (390)
T ss_dssp             SCCTTCEEEEESSSCHH-------HHHHHHHTTCEEEEECBCTT---TCSBCHHHHHHHCC-TTEEEEEEECGGGCCCCH
T ss_pred             CCCCCCEEEECCCCHHH-------HHHHHHHCCCEEEEEECCCC---CCCCCHHHHHHHHC-CCCEEEEEECCCCCCCCH
T ss_conf             88999989967760086-------49999876998998726654---31347899998742-487053300567884678


Q ss_pred             HHHHHHHHHCCC
Q ss_conf             999987874478
Q gi|254780869|r  399 VAHKELALQEGI  410 (559)
Q Consensus       399 ~~h~~la~~~gv  410 (559)
                      .+-.++|++.|+
T Consensus       145 ~~I~~i~~~~~i  156 (390)
T 3b8x_A          145 DEINKIIGGRDI  156 (390)
T ss_dssp             HHHHHHHTTSCC
T ss_pred             HHHHHHHHHCCC
T ss_conf             999999987298


No 62 
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=92.00  E-value=0.59  Score=24.37  Aligned_cols=153  Identities=11%  Similarity=0.132  Sum_probs=68.5

Q ss_pred             CCCCCCCCCCC----CCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHH-HHHCCEEEEECHHHHHHHHHHHHC
Q ss_conf             35645788877----7787999999999862798399994147789999999999-871886998448699999988742
Q gi|254780869|r  197 DSTNAMREGTC----ISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIA-EQIGRKIVLLGSSLKRVVSVAIDV  271 (559)
Q Consensus       197 esT~~~~~~~~----~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a-~~~~R~v~i~Grs~~~~~~~a~~~  271 (559)
                      +|++....+..    +--.++++.+.+.+ +.+. ++..+.+  -.-+.-++.+. .+-|-.|.+-..+......+....
T Consensus        27 ~sg~~~~~~~~~~~g~~~~~fE~~~a~~~-g~k~-ai~~~sg--T~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~i~~~  102 (418)
T 2c81_A           27 QSNRWAISGYWTGEESMERKFAKAFADFN-GVPY-CVPTTSG--STALMLALEALGIGEGDEVIVPSLTWIATATAVLNV  102 (418)
T ss_dssp             HHTCCSTTSBCCSSCCHHHHHHHHHHHHH-TCSE-EEEESCH--HHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT
T ss_pred             HHCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCE-EEEECCH--HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHC
T ss_conf             71973035840589869999999999997-8595-9997787--999999999849897199998997509999999983


Q ss_pred             CC----CC--CCCCCCCHHHHCCCCCCC-EEEEEECCCCC--HHHHHHHHCCCC---------C------CCCCC-CCCC
Q ss_conf             87----67--765422656622388020-89999669632--688988520277---------7------65302-6896
Q gi|254780869|r  272 GI----IK--KDQLFLSDESFGLYPREQ-LIVIATGSQGE--PRSALAQLSRGE---------M------RNVKL-AEKD  326 (559)
Q Consensus       272 g~----l~--~~~~~i~~~~~~~~p~~~-~~ii~TGsqge--~~a~l~ria~~~---------~------~~i~l-~~~D  326 (559)
                      |.    ++  .....++.+.++....++ ..++.+..-|.  ....+..+|...         |      ..-.+ .-||
T Consensus       103 g~~pv~~Di~~~~~~~~~~~~~~~~~~~t~ai~~vh~~G~~~d~~~I~~ia~~~~i~vIeD~a~a~g~~~~g~~~G~~gd  182 (418)
T 2c81_A          103 NALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPVHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGD  182 (418)
T ss_dssp             TCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECCBCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSS
T ss_pred             CCEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCHHHCCEECCEEECCCCE
T ss_conf             99877731456411134588999734676226753047751579999999998498899737544188069856146731


Q ss_pred             EEEEE---EECCCC--------HHHHHHHHHHHHHCCC
Q ss_conf             69999---615886--------1778999997651031
Q gi|254780869|r  327 TVIFS---SRAIPG--------NEVAIGHIKNRLVEQG  353 (559)
Q Consensus       327 ~vI~s---s~~ipG--------nE~~~~~~~n~l~~~g  353 (559)
                      .-+||   ++.+++        |.+..+..+..+...|
T Consensus       183 ~~~~Sf~~~K~i~~geGG~i~t~d~~~~~~~~~lr~~g  220 (418)
T 2c81_A          183 IGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADS  220 (418)
T ss_dssp             EEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTT
T ss_pred             EEEEECCCCEEECCCCCCEEECCCHHHHHHHHHHHHHC
T ss_conf             89981667815613788611069878999999999708


No 63 
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=90.38  E-value=0.35  Score=26.01  Aligned_cols=79  Identities=16%  Similarity=0.257  Sum_probs=42.8

Q ss_pred             CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHH
Q ss_conf             026896699996158861778999997651031134303566641315788978999999754953999704--577999
Q gi|254780869|r  321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIH--GEPLHL  398 (559)
Q Consensus       321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvH--Ge~rhl  398 (559)
                      -+++||-||.++-.-|       .+.+.+...|++.+.-|.+..   +..-+.++++..+. -++|.+||||  |-.-.+
T Consensus       106 gl~~gdeVivp~~t~~-------at~~ai~~~Ga~pvf~Did~~---t~~id~~~le~~it-~ktkaIi~vh~~G~~~d~  174 (437)
T 3bb8_A          106 ALKPGDEVITVAAGFP-------TTVNPTIQNGLIPVFVDVDIP---TYNVNASLIEAAVS-DKTKAIMIAHTLGNLFDL  174 (437)
T ss_dssp             SCCTTCEEEECSSSCH-------HHHHHHHHTTCEEEECCEETT---TTEECGGGHHHHCC-TTEEEEEEECGGGCCCCH
T ss_pred             CCCCCCEEEECCCCHH-------HHHHHHHHCCCEEEEEECCCC---CCCCCHHHHHHHHC-CCCCEEEEECCCCCCCCH
T ss_conf             6799899998596479-------999999985998999304566---43221899998724-697389984577763334


Q ss_pred             HHHHHHHHHCCC
Q ss_conf             999987874478
Q gi|254780869|r  399 VAHKELALQEGI  410 (559)
Q Consensus       399 ~~h~~la~~~gv  410 (559)
                      .+-.++|++.|+
T Consensus       175 ~~i~~ia~~~~i  186 (437)
T 3bb8_A          175 AEVRRVADKYNL  186 (437)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCC
T ss_conf             899999998598


No 64 
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, structural genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=89.77  E-value=0.68  Score=23.90  Aligned_cols=13  Identities=8%  Similarity=-0.371  Sum_probs=4.8

Q ss_pred             CCCCHHHHHHHHH
Q ss_conf             7889789999997
Q gi|254780869|r  369 GHPYPNDLKRMYQ  381 (559)
Q Consensus       369 GHa~~edl~~li~  381 (559)
                      +..+.++++..+.
T Consensus       112 ~~id~~~l~~~I~  124 (377)
T 3ju7_A          112 WYMDKTVLWDKIE  124 (377)
T ss_dssp             CSBCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH
T ss_conf             7728899999986


No 65 
>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus HB8}
Probab=86.93  E-value=1.4  Score=21.70  Aligned_cols=165  Identities=13%  Similarity=0.094  Sum_probs=77.0

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHH-HHHHHHHHHHHCCEEEEE-CHH----HHHHHHHH---HHCCCCCC
Q ss_conf             7777879999999998627983999941477899-999999998718869984-486----99999988---74287677
Q gi|254780869|r  206 TCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSR-IRSIIDIAEQIGRKIVLL-GSS----LKRVVSVA---IDVGIIKK  276 (559)
Q Consensus       206 ~~~sE~~v~~~i~~~~~~~~grViv~~fasni~R-i~~i~~~a~~~~R~v~i~-Grs----~~~~~~~a---~~~g~l~~  276 (559)
                      ..||-.++.+.++++.++. ..|++-+.||.+.- .+.+..+|++...+|.+. .++    +.-.+.-|   .+.|. +.
T Consensus        62 S~Ps~~~~~~~f~~~~~~~-d~ii~i~iSs~lSgty~~a~~aa~~~~~~I~ViDS~~~s~~~g~lv~~a~~~~~~G~-s~  139 (280)
T 2dt8_A           62 SQPSPEDFARVYREALEEA-DHVLSLHISGKLSGTVQSAELAAQEFPGRVTVVDTQAASLGVGMMVLRAKELLEEGQ-SL  139 (280)
T ss_dssp             ECCCHHHHHHHHHHHTTSC-SEEEEEESCTTTCTHHHHHHHHHTTSTTSEEEEECSCCTHHHHHHHHHHHHHHHHTC-CH
T ss_pred             CCCCHHHHHHHHHHHHCCC-CCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCC-CH
T ss_conf             7999999999999973589-858999777337689999999998689989998599611899999999999998398-99


Q ss_pred             CCCCCCHHHHCCCCCCCEEEEEECCC------CCHHHHHHHHCC--CCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf             65422656622388020899996696------326889885202--7776530268966999961588617789999976
Q gi|254780869|r  277 DQLFLSDESFGLYPREQLIVIATGSQ------GEPRSALAQLSR--GEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNR  348 (559)
Q Consensus       277 ~~~~i~~~~~~~~p~~~~~ii~TGsq------ge~~a~l~ria~--~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~  348 (559)
                      +. +  .+.+..+.++-.+.++-.+-      |+.-.+.+.+++  +-.+.++++.|....+  .-..|.++++.++++.
T Consensus       140 ~e-i--~~~l~~~~~~~~~~f~v~~L~~L~kgGRis~~~a~ig~~L~IkPIl~~~~G~~~~~--~k~Rg~kka~~~~~~~  214 (280)
T 2dt8_A          140 EA-V--LAELERLRRDHFVRFSVATLEFLKRGGRIGGAQAFLGTLLNLKPVLTLKEGRVEAA--GRARGEKKAREEILKA  214 (280)
T ss_dssp             HH-H--HHHHHHHHHSCEEEEECSCSHHHHHHTCCGGGGGGTTTCTTSEEEEEEETTEEEEE--EEESSHHHHHHHHHHH
T ss_pred             HH-H--HHHHHHHHHHCEEEEEECCHHHHHHCCCCCHHHHHHHHHHCCEEEEEECCCCEEEE--ECCCCHHHHHHHHHHH
T ss_conf             99-9--99999988515899995857999768976178999987519589999759968982--1146699999999999


Q ss_pred             HHCCCEEEEECCCCCCEECCCCCCHHHHHHHHH
Q ss_conf             510311343035666413157889789999997
Q gi|254780869|r  349 LVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQ  381 (559)
Q Consensus       349 l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~  381 (559)
                      +.+...+    .....+.+..+.+.++..++.+
T Consensus       215 ~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~  243 (280)
T 2dt8_A          215 FRAWAEG----RKRIRAYFLYSGDEDAVAALRQ  243 (280)
T ss_dssp             HHHHHTT----CSCEEEEEEESSCTHHHHHHHH
T ss_pred             HHHHHCC----CCCEEEEEEECCCHHHHHHHHH
T ss_conf             9987338----8870899997899899999999


No 66 
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; 1.50A {Hahella chejuensis}
Probab=86.35  E-value=1.2  Score=22.16  Aligned_cols=77  Identities=21%  Similarity=0.203  Sum_probs=53.9

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf             89889986----08788299996356457888777787999999999862798--3999941477899999999998718
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG--CVLVTTFSSSVSRIRSIIDIAEQIG  251 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g--rViv~~fasni~Ri~~i~~~a~~~~  251 (559)
                      .|+..+.+    +-+.||+.+++-+|.++.  .+.|+.+-.+-++.+.+..++  .|++.+.+.+.....+..+.|++.|
T Consensus        18 iD~~~~~~~i~~l~~~Gv~gi~v~G~tGE~--~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~ai~~a~~a~~~G   95 (297)
T 2rfg_A           18 VDEKALAGLVDWQIKHGAHGLVPVGTTGES--PTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAG   95 (297)
T ss_dssp             ECHHHHHHHHHHHHHTTCSEEECSSGGGTG--GGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECEECCCH--HHCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf             899999999999997799999979233145--348999999999998997189970999688601999999999999809


Q ss_pred             CEEEE
Q ss_conf             86998
Q gi|254780869|r  252 RKIVL  256 (559)
Q Consensus       252 R~v~i  256 (559)
                      =.-++
T Consensus        96 ~d~i~  100 (297)
T 2rfg_A           96 ADAVL  100 (297)
T ss_dssp             CSEEE
T ss_pred             CCEEE
T ss_conf             99897


No 67 
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=86.22  E-value=1.5  Score=21.45  Aligned_cols=77  Identities=21%  Similarity=0.189  Sum_probs=56.1

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf             89889986----087882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG  251 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~  251 (559)
                      .|+..+.+    +-+.||+.+++-+|.  .++.+.|..+-.+-++.+.+.+++|  |++.+.+.+.......++.|++.|
T Consensus        18 iD~~~l~~~i~~li~~Gv~Gi~~~G~t--GE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G   95 (294)
T 2ehh_A           18 VDYEALGNLIEFHVDNGTDAILVCGTT--GESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVG   95 (294)
T ss_dssp             ECHHHHHHHHHHHHTTTCCEEEESSTT--TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECEEC--CCHHHCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf             899999999999997599989978554--334348999999999999997389987899817845999999999999769


Q ss_pred             CEEEE
Q ss_conf             86998
Q gi|254780869|r  252 RKIVL  256 (559)
Q Consensus       252 R~v~i  256 (559)
                      =.-++
T Consensus        96 ad~i~  100 (294)
T 2ehh_A           96 ADGAL  100 (294)
T ss_dssp             CSEEE
T ss_pred             CCEEE
T ss_conf             99999


No 68 
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=86.02  E-value=1.5  Score=21.38  Aligned_cols=118  Identities=9%  Similarity=0.117  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCC----CC--CCCCCCCH
Q ss_conf             8799999999986279839999414778999999999987188699844869999998874287----67--76542265
Q gi|254780869|r  210 EKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGI----IK--KDQLFLSD  283 (559)
Q Consensus       210 E~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~----l~--~~~~~i~~  283 (559)
                      -.++++.+.+.+ +.+. ++..+.+  -.-++.++.+. ..+..|.+-.-+......++...|.    .+  +....++.
T Consensus        54 v~~fE~~la~~~-g~k~-av~~sSG--T~AL~lal~al-~~~deVivp~~t~~at~~ai~~~G~~pvfvDid~~t~~~d~  128 (424)
T 2po3_A           54 VREFEERVAGLA-GVRH-AVATCNA--TAGLQLLAHAA-GLTGEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDP  128 (424)
T ss_dssp             HHHHHHHHHHHH-TSSE-EEEESCH--HHHHHHHHHHH-TCCSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCH
T ss_pred             HHHHHHHHHHHH-CCCE-EEEECCH--HHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCH
T ss_conf             999999999997-8295-9996677--99999999976-99698998797418459999977998999874144356889


Q ss_pred             HHHCCCC-CCCEEEEEECCCCC--HHHHHHHHCCCCC---------------CCCCC-CCCCEEEEEE
Q ss_conf             6622388-02089999669632--6889885202777---------------65302-6896699996
Q gi|254780869|r  284 ESFGLYP-REQLIVIATGSQGE--PRSALAQLSRGEM---------------RNVKL-AEKDTVIFSS  332 (559)
Q Consensus       284 ~~~~~~p-~~~~~ii~TGsqge--~~a~l~ria~~~~---------------~~i~l-~~~D~vI~ss  332 (559)
                      +.+...- ..-..++++-.-|.  .+..+.++++...               +.-.+ .-||..+||.
T Consensus       129 ~~~~~~it~~t~aii~vh~~G~~~d~~~i~~iak~~~l~vIEDaA~a~Ga~~~g~~~Gs~Gd~~~fSF  196 (424)
T 2po3_A          129 DQVAAAVTPRTSAVVGVHLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSF  196 (424)
T ss_dssp             HHHGGGCCTTEEEEEEECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEEC
T ss_pred             HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHCCCCCCEEECCCCCEEEECC
T ss_conf             99986513575289985477875558899999998298598400443175329988445765332236


No 69 
>1mgp_A Hypothetical protein TM841; two domain structure with mixed alpha/beta structures in BOTH domains, structural genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP: c.119.1.1 PDB: 1vpv_A*
Probab=85.92  E-value=1.5  Score=21.34  Aligned_cols=171  Identities=12%  Similarity=0.136  Sum_probs=79.7

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHH-HHHHHHHHHHHCCEEEEEC-HH----HHHHH-HHH--HHCCCCCCC
Q ss_conf             777879999999998627983999941477899-9999999987188699844-86----99999-988--742876776
Q gi|254780869|r  207 CISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSR-IRSIIDIAEQIGRKIVLLG-SS----LKRVV-SVA--IDVGIIKKD  277 (559)
Q Consensus       207 ~~sE~~v~~~i~~~~~~~~grViv~~fasni~R-i~~i~~~a~~~~R~v~i~G-rs----~~~~~-~~a--~~~g~l~~~  277 (559)
                      .||-.++.+.++++.++---.|++-+.||.+.- .+.+..||+..+.+|.+.. ++    +.-.+ .++  .+.|. +..
T Consensus        90 qPs~~~~~~~~~~~~~~gyd~ii~i~lSs~LSgty~~a~~a~~~~~~~I~ViDS~~~s~~~g~lv~~a~~l~~~G~-s~e  168 (313)
T 1mgp_A           90 QPSVEDFKKRYLKYKEEDYDVVLVLTLSSKLSGTYNSAVLASKEVDIPVYVVDTLLASGAIPLPARVAREMLENGA-TIE  168 (313)
T ss_dssp             CCCHHHHHHHHHHHHHTTCSEEEEEESCTTTCSHHHHHHHHHHHSSSCEEEEECSCCGGGTHHHHHHHHHHHHTTC-CHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCC-CHH
T ss_conf             9999999999999986699789999577517689999999986149958995276420779999999999998499-999


Q ss_pred             CCCCCHHHHCCC-CCCCE-EEEEECCC------CCHHHHHHHHCC--CCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf             542265662238-80208-99996696------326889885202--777653026896699996158861778999997
Q gi|254780869|r  278 QLFLSDESFGLY-PREQL-IVIATGSQ------GEPRSALAQLSR--GEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKN  347 (559)
Q Consensus       278 ~~~i~~~~~~~~-p~~~~-~ii~TGsq------ge~~a~l~ria~--~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n  347 (559)
                      ...   +.+..+ ++.++ .+++-.+-      |+.-.+.+.+++  +-.+-+.++.|....+.  -..|.++++.++++
T Consensus       169 eI~---~~l~~~~~~~~~~~~f~v~~L~~L~kgGRis~~~a~ig~lL~IkPIl~~~~G~i~~~~--K~Rg~kka~~~l~~  243 (313)
T 1mgp_A          169 EVL---KKLDERMKNKDFKAIFYVSNFDYLVKGGRVSKFQGFVGNLLKIRVCLHIENGELIPYR--KVRGDKKAIEALIE  243 (313)
T ss_dssp             HHH---HHHHHHHHTTCEEEEEEESCTHHHHHHTCC---------CTTEEEEEEEETTEEEEEE--EEESHHHHHHHHHH
T ss_pred             HHH---HHHHHHHHCCEEEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCEEEEEECCCEEEEEE--EEECHHHHHHHHHH
T ss_conf             999---9999987437069999958899998689506899999861072699997097489975--54008899999999


Q ss_pred             HHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCE
Q ss_conf             6510311343035666413157889789999997549539
Q gi|254780869|r  348 RLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQV  387 (559)
Q Consensus       348 ~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~  387 (559)
                      .+.+...+    .....+..+.-.+.++..++.+.++-++
T Consensus       244 ~~~~~~~~----~~~~~i~i~~~~~~e~a~~l~~~l~~~~  279 (313)
T 1mgp_A          244 KLREDTPE----GSKLRVIGVHADNEAGVVELLNTLRKSY  279 (313)
T ss_dssp             HHHTTSCT----TCEEEEEEEESSCHHHHHHHHHHHTTTS
T ss_pred             HHHHHHCC----CCCEEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf             99986315----8971899994899999999999998667


No 70 
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=84.66  E-value=1.4  Score=21.56  Aligned_cols=77  Identities=22%  Similarity=0.200  Sum_probs=52.8

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf             89889986----087882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG  251 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~  251 (559)
                      .|++.+.+    +-+.|++.++.-+|.++.  ++.|..+-.+-++...+..+++  |++.+.+.+........+.|++.|
T Consensus        18 iD~~~~~~~i~~l~~~Gv~gi~v~G~tGE~--~~Ls~eEr~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G   95 (292)
T 2vc6_A           18 IDEVALHDLVEWQIEEGSFGLVPCGTTGES--PTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAG   95 (292)
T ss_dssp             ECHHHHHHHHHHHHHTTCSEEETTSGGGTG--GGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECEECHHH--HHCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf             299999999999997799999977041125--458999999999999987179861897368437999999999999769


Q ss_pred             CEEEE
Q ss_conf             86998
Q gi|254780869|r  252 RKIVL  256 (559)
Q Consensus       252 R~v~i  256 (559)
                      =.-++
T Consensus        96 ad~v~  100 (292)
T 2vc6_A           96 ADGVL  100 (292)
T ss_dssp             CSEEE
T ss_pred             CCEEE
T ss_conf             99999


No 71 
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=84.46  E-value=1.8  Score=20.88  Aligned_cols=22  Identities=5%  Similarity=-0.067  Sum_probs=8.9

Q ss_pred             CCEEEEECHHHHHHHHHHHHCC
Q ss_conf             8869984486999999887428
Q gi|254780869|r  251 GRKIVLLGSSLKRVVSVAIDVG  272 (559)
Q Consensus       251 ~R~v~i~Grs~~~~~~~a~~~g  272 (559)
                      |-.|.+-..+....+.++..+|
T Consensus        72 gdeVi~p~~t~~~~~~~~~~~g   93 (394)
T 1o69_A           72 DDIVLASSFTFIASVAPICYLK   93 (394)
T ss_dssp             TCEEEEESSSCGGGTHHHHHTT
T ss_pred             CCEEEECCCCCCEECHHHHHCC
T ss_conf             6999938986010212365266


No 72 
>3kl7_A Putative metal-dependent hydrolase; structural genomics, joint center for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}
Probab=84.02  E-value=0.44  Score=25.25  Aligned_cols=44  Identities=14%  Similarity=0.125  Sum_probs=32.5

Q ss_pred             CCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf             57889789999997549539997045779999999878744786
Q gi|254780869|r  368 SGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIA  411 (559)
Q Consensus       368 SGHa~~edl~~li~~ikPk~~IPvHGe~rhl~~h~~la~~~gv~  411 (559)
                      ..|-+.+|..++.+.++||++||+|=..-.+...++..++.|++
T Consensus       185 ~~~m~~~~A~~~~~~l~pk~viP~H~~~~~~~~~~~~~~~~g~~  228 (235)
T 3kl7_A          185 PYTMTVSQAAKAARMFSPKILYPYHYGDTKIGELKDALKDSGID  228 (235)
T ss_dssp             TTSCCHHHHHHHHHHHCCSEEEEESCTTCCTTHHHHHTTTSCCE
T ss_pred             CCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf             77579999999999729999999568998889999999866996


No 73 
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MCSG, protein structure initiative; 1.20A {Agrobacterium tumefaciens str}
Probab=82.10  E-value=2.2  Score=20.24  Aligned_cols=77  Identities=14%  Similarity=0.163  Sum_probs=54.1

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf             89889986----087882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG  251 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~  251 (559)
                      .|+..+.+    +-+.||+.+++-+|.+  ++.+.|..+-.+-++.+.+..+++  |++.+-+.+.....+..+.|++.|
T Consensus        21 iD~~~l~~~i~~l~~~Gv~gi~~~G~tG--E~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~t~~~i~~a~~a~~~G   98 (294)
T 3b4u_A           21 VDIDAMIAHARRCLSNGCDSVTLFGTTG--EGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAG   98 (294)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEEESSTTT--TGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECEECC--CHHHCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf             7999999999999977999999781253--35358999999999885552157775353147785999999999998749


Q ss_pred             CEEEE
Q ss_conf             86998
Q gi|254780869|r  252 RKIVL  256 (559)
Q Consensus       252 R~v~i  256 (559)
                      -.-++
T Consensus        99 ad~il  103 (294)
T 3b4u_A           99 ARNIL  103 (294)
T ss_dssp             CSEEE
T ss_pred             CCEEE
T ss_conf             97898


No 74 
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=81.32  E-value=2.3  Score=20.05  Aligned_cols=77  Identities=10%  Similarity=0.094  Sum_probs=53.1

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf             89889986----087882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG  251 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~  251 (559)
                      .|++.+.+    +-+.||+.+++-+|.  .+..+.|..+-.+-++.+.+..++|  |++.+.+.+..-..+.++.|++.|
T Consensus        34 iD~~~~~~~i~~li~~Gv~Gi~v~G~t--GE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~G  111 (304)
T 3cpr_A           34 IDIAAGREVAAYLVDKGLDSLVLAGTT--GESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAG  111 (304)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESSTT--TTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECEEH--HHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf             499999999999997699989978551--415558999999999999998368876786257412999999999999739


Q ss_pred             CEEEE
Q ss_conf             86998
Q gi|254780869|r  252 RKIVL  256 (559)
Q Consensus       252 R~v~i  256 (559)
                      =.-++
T Consensus       112 ad~i~  116 (304)
T 3cpr_A          112 ADGLL  116 (304)
T ss_dssp             CSEEE
T ss_pred             CCEEE
T ss_conf             99999


No 75 
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=81.27  E-value=2.2  Score=20.17  Aligned_cols=77  Identities=22%  Similarity=0.136  Sum_probs=52.2

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf             89889986----08788299996356457888777787999999999862798--3999941477899999999998718
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG--CVLVTTFSSSVSRIRSIIDIAEQIG  251 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g--rViv~~fasni~Ri~~i~~~a~~~~  251 (559)
                      .|+..+.+    +-+.||+.+++-+|.  .++.+.|..+-.+-++.+.+..++  .+++.+.+.+.......++.|++.|
T Consensus        26 iD~~~l~~~i~~l~~~Gv~gi~~~G~~--GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G  103 (309)
T 3fkr_A           26 LDLASQKRAVDFMIDAGSDGLCILANF--SEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLG  103 (309)
T ss_dssp             BCHHHHHHHHHHHHHTTCSCEEESSGG--GTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECEEC--CCHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             599999999999997599989978353--334657999999999999987179960899678786899999999974349


Q ss_pred             CEEEE
Q ss_conf             86998
Q gi|254780869|r  252 RKIVL  256 (559)
Q Consensus       252 R~v~i  256 (559)
                      =.-++
T Consensus       104 ~d~~l  108 (309)
T 3fkr_A          104 AAMVM  108 (309)
T ss_dssp             CSEEE
T ss_pred             CCEEE
T ss_conf             98788


No 76 
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=81.17  E-value=2.4  Score=20.02  Aligned_cols=76  Identities=17%  Similarity=0.168  Sum_probs=50.5

Q ss_pred             CCHHHHH----HCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCE
Q ss_conf             8988998----608788299996356457888777787999999999862798399994147789999999999871886
Q gi|254780869|r  178 TDKDSLC----AIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRK  253 (559)
Q Consensus       178 ~d~~~l~----~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~  253 (559)
                      .|+..+.    .+-+.||+.+++-+|.+  ++.+.|..+-.+-++.+.+. .+.+++.+.+.+........+.|++.|=.
T Consensus        16 iD~~~~~~~i~~l~~~Gv~Gl~~~GstG--E~~~Ls~~Er~~l~~~~~~~-~~~~i~gv~~~st~~~i~~a~~a~~~G~d   92 (286)
T 2r91_A           16 LDPELFANHVKNITSKGVDVVFVAGTTG--LGPALSLQEKMELTDAATSA-ARRVIVQVASLNADEAIALAKYAESRGAE   92 (286)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEEETSTTT--TGGGSCHHHHHHHHHHHHHH-CSSEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECEECC--CHHHCCHHHHHHHHHHHHHH-CCCEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             8999999999999977999999791265--61028999999999999974-24512111243258999999999986999


Q ss_pred             EEE
Q ss_conf             998
Q gi|254780869|r  254 IVL  256 (559)
Q Consensus       254 v~i  256 (559)
                      -++
T Consensus        93 ~i~   95 (286)
T 2r91_A           93 AVA   95 (286)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             898


No 77 
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=80.82  E-value=2.4  Score=19.94  Aligned_cols=78  Identities=23%  Similarity=0.196  Sum_probs=54.4

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf             89889986----08788299996356457888777787999999999862798--3999941477899999999998718
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG--CVLVTTFSSSVSRIRSIIDIAEQIG  251 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g--rViv~~fasni~Ri~~i~~~a~~~~  251 (559)
                      .|++.+.+    +-+.||+.+++-+|.+  +..+.|..+-.+-++.+.+..++  .|++.+.+.+..-..+.++.|++.|
T Consensus        19 iD~~~l~~~i~~l~~~Gv~Gi~~~G~tG--E~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G   96 (291)
T 3a5f_A           19 VDFDKLSELIEWHIKSKTDAIIVCGTTG--EATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIG   96 (291)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESSGGG--TGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCH--HHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf             0999999999999977999999890011--16569999999999999986476653898767851999999999999708


Q ss_pred             CEEEEE
Q ss_conf             869984
Q gi|254780869|r  252 RKIVLL  257 (559)
Q Consensus       252 R~v~i~  257 (559)
                      =.-++.
T Consensus        97 ad~i~v  102 (291)
T 3a5f_A           97 VDGLLV  102 (291)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
T ss_conf             997998


No 78 
>3fxa_A SIS domain protein; YP_013136.1, putative sugar-phosphate isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=79.18  E-value=2.6  Score=19.72  Aligned_cols=11  Identities=36%  Similarity=0.495  Sum_probs=4.2

Q ss_pred             HHHCCEEEEEC
Q ss_conf             87188699844
Q gi|254780869|r  248 EQIGRKIVLLG  258 (559)
Q Consensus       248 ~~~~R~v~i~G  258 (559)
                      .++.++|+++|
T Consensus        42 ~~a~~rI~~~G   52 (201)
T 3fxa_A           42 AECTGKIVVAG   52 (201)
T ss_dssp             HHCSSCEEEEC
T ss_pred             HHCCCCEEEEE
T ss_conf             80899389997


No 79 
>3noe_A DAP-A, dihydrodipicolinate synthase; Lys biosynthesis pathway, lyase; 2.95A {Pseudomonas aeruginosa}
Probab=77.66  E-value=3  Score=19.27  Aligned_cols=77  Identities=21%  Similarity=0.230  Sum_probs=53.8

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf             89889986----087882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG  251 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~  251 (559)
                      .|+..+.+    +-+.||+.+..-+|.+  ++.+.|+.+-.+-++.+.+.++||  |++.+.+.+.......++.|++.|
T Consensus        19 iD~~~~~~~i~~li~~Gv~gi~i~G~tG--E~~~Ls~~Er~~l~~~~~~~~~g~~~vi~gv~~~s~~~~i~~a~~a~~~G   96 (292)
T 3noe_A           19 LDWDSLAKLVDFHLQDGTNAIVAVGTTG--ESATLDVEEHIQVVRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGG   96 (292)
T ss_dssp             BCHHHHHHHHHHHHHHTCSEEEESSTTT--TGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECEECC--HHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             5999999999999985999899885752--26669999999999999997258886898558755999999999999849


Q ss_pred             CEEEE
Q ss_conf             86998
Q gi|254780869|r  252 RKIVL  256 (559)
Q Consensus       252 R~v~i  256 (559)
                      =.-++
T Consensus        97 ad~v~  101 (292)
T 3noe_A           97 ADACL  101 (292)
T ss_dssp             CSEEE
T ss_pred             CCEEE
T ss_conf             99999


No 80 
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=77.52  E-value=1.7  Score=21.09  Aligned_cols=84  Identities=17%  Similarity=0.206  Sum_probs=48.6

Q ss_pred             ECCCCCCEEEEEECCCCCCCC-----CCCCEEE-ECC-CHHHHHHHHHCCCEEEEECCCCCCCC--CHHHHHH--HCCCC
Q ss_conf             517778648999776767888-----7675028-707-95798766412468996054301216--0788898--62997
Q gi|254780869|r   26 YGSPSSRKWIMIDCGVSFPKD-----DLPGVDL-VFP-DITFIMKERKNLMAIFITHAHEDHYG--ALHDLWS--FLHVP   94 (559)
Q Consensus        26 ~~~~~~~~~iiiD~G~~fp~~-----~~~gid~-iiP-d~~~l~~~~~~i~~i~iTH~H~DHiG--alp~l~~--~~~~p   94 (559)
                      |....++.+++||+|.+|...     -.+|+.. |+| |.+.-+-...+.+||+||=+-.+-.-  .......  ..+.|
T Consensus        19 ~~~~~~~~I~iiDfGsq~~~lI~R~lrelgv~~eI~p~~~~~~~i~~~~~dgIIlSgGP~~~~~~~~~~~~~~~~~~~~P   98 (218)
T 2vpi_A           19 YFQSMEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKP   98 (218)
T ss_dssp             ----CTTCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCCHHHHHHHTCSEEEEEC---------CCCCCGGGGTSSCC
T ss_pred             ECCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             63168898999989964889999998716966999889999899985398989990999970124333110999838998


Q ss_pred             EECCHHHHHHHHHHH
Q ss_conf             792999999999999
Q gi|254780869|r   95 VYASPFAIGLLEAKR  109 (559)
Q Consensus        95 IY~s~~t~~li~~~~  109 (559)
                      |.+-=+...+|-..+
T Consensus        99 ILGIClG~Qlla~a~  113 (218)
T 2vpi_A           99 VLGICYGMQMMNKVF  113 (218)
T ss_dssp             EEEETHHHHHHHHHT
T ss_pred             EEEEHHHHHHHHHHC
T ss_conf             787179899999985


No 81 
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=76.16  E-value=3.3  Score=18.99  Aligned_cols=78  Identities=23%  Similarity=0.271  Sum_probs=54.2

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf             89889986----087882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG  251 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~  251 (559)
                      .|++.+.+    +-+.||+.+++-+|.  .++.+.|..+-.+-++.+.+..++|  |++.+.+.+..-..+.++.|++.|
T Consensus        18 iD~~~~~~~i~~~~~~Gv~gi~~~G~t--gE~~~Ls~~Er~~l~~~~~~~~~~r~~vi~g~~~~s~~~ai~~a~~a~~~G   95 (289)
T 2yxg_A           18 VDFDGLEENINFLIENGVSGIVAVGTT--GESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVG   95 (289)
T ss_dssp             ECHHHHHHHHHHHHHTTCSEEEESSTT--TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECEEC--CCHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             899999999999997699989978443--035448999999999999998289960897368745999999999999779


Q ss_pred             CEEEEE
Q ss_conf             869984
Q gi|254780869|r  252 RKIVLL  257 (559)
Q Consensus       252 R~v~i~  257 (559)
                      =.-++.
T Consensus        96 ad~v~v  101 (289)
T 2yxg_A           96 ADAVLS  101 (289)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
T ss_conf             999998


No 82 
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, cytoplasm; 2.00A {Neisseria meningitidis serogroup B}
Probab=76.08  E-value=3.3  Score=18.98  Aligned_cols=78  Identities=15%  Similarity=0.114  Sum_probs=52.8

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf             89889986----08788299996356457888777787999999999862798--3999941477899999999998718
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG--CVLVTTFSSSVSRIRSIIDIAEQIG  251 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g--rViv~~fasni~Ri~~i~~~a~~~~  251 (559)
                      .|++.+.+    +-+.|++.+.+-+|.++.  .+.|..+-.+-++.+.+.+++  .+++.+.+.+..-..+..+.|++.|
T Consensus        25 iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE~--~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G  102 (297)
T 3flu_A           25 IHYEQLRDLIDWHIENGTDGIVAVGTTGES--ATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAG  102 (297)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESSTTTTG--GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCHHHHH--HHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             699999999999997699989968415637--769199999999999987036555456767563999999999999829


Q ss_pred             CEEEEE
Q ss_conf             869984
Q gi|254780869|r  252 RKIVLL  257 (559)
Q Consensus       252 R~v~i~  257 (559)
                      =..++.
T Consensus       103 ad~v~v  108 (297)
T 3flu_A          103 ADYTLS  108 (297)
T ss_dssp             CSEEEE
T ss_pred             CCCCEE
T ss_conf             987562


No 83 
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: MSE; 1.80A {Campylobacter jejuni} PDB: 3ler_A*
Probab=76.03  E-value=3.3  Score=18.97  Aligned_cols=77  Identities=21%  Similarity=0.210  Sum_probs=52.0

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC---CEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf             89889986----08788299996356457888777787999999999862798---399994147789999999999871
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG---CVLVTTFSSSVSRIRSIIDIAEQI  250 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g---rViv~~fasni~Ri~~i~~~a~~~  250 (559)
                      .|+..+.+    +-+.||+.++.=+|.  .+..+.|..+-.+-++.+.+.++|   .|++.+.+.+..-..+.++.|++.
T Consensus        25 iD~~~l~~~i~~l~~~Gv~gl~v~G~t--GE~~~Ls~~Er~~l~~~~~~~~~~~~~~vi~gv~~~~~~~ai~la~~A~~~  102 (301)
T 3m5v_A           25 VDEQSYARLIKRQIENGIDAVVPVGTT--GESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEH  102 (301)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEECSSTT--TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECEEC--CCHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             899999999999998499989968521--357668999999999999998358876389557766799999999999976


Q ss_pred             CCEEEE
Q ss_conf             886998
Q gi|254780869|r  251 GRKIVL  256 (559)
Q Consensus       251 ~R~v~i  256 (559)
                      |=.-++
T Consensus       103 Gad~i~  108 (301)
T 3m5v_A          103 GADGIL  108 (301)
T ss_dssp             TCSEEE
T ss_pred             CCCEEE
T ss_conf             999987


No 84 
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, JCSG, PSI, protein structure initiative; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1
Probab=75.89  E-value=3.3  Score=18.94  Aligned_cols=77  Identities=22%  Similarity=0.248  Sum_probs=52.1

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf             89889986----087882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG  251 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~  251 (559)
                      .|++.+.+    +-+.|++.+++-+|.++  +.+.|..+-.+-++.+.+..+++  |++.+.+.+.....+.++.|++.|
T Consensus        30 iD~~~~~~~i~~li~~Gv~gi~~~G~tGE--~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~ai~~a~~a~~~G  107 (306)
T 1o5k_A           30 LDLESYERLVRYQLENGVNALIVLGTTGE--SPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLG  107 (306)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEEESSGGGT--GGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECEEHHH--HHHCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             89999999999999769998996821342--5558999999999999985488888898468654999999999999569


Q ss_pred             CEEEE
Q ss_conf             86998
Q gi|254780869|r  252 RKIVL  256 (559)
Q Consensus       252 R~v~i  256 (559)
                      =.-++
T Consensus       108 ad~v~  112 (306)
T 1o5k_A          108 ANGVL  112 (306)
T ss_dssp             CSEEE
T ss_pred             CCEEE
T ss_conf             99999


No 85 
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=74.64  E-value=3.6  Score=18.72  Aligned_cols=76  Identities=14%  Similarity=0.257  Sum_probs=48.1

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCE
Q ss_conf             89889986----08788299996356457888777787999999999862798399994147789999999999871886
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRK  253 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~  253 (559)
                      .|+..+.+    +-+.||+.++.-+|.++  +.+.|..+-.+-++.+.+. .+.+++.+.+.+.....+.++.|++.|-.
T Consensus        17 iD~~~l~~~i~~l~~~Gv~Gi~v~GstGE--~~~Ls~eEr~~l~~~~~~~-~~~~i~~v~~~~t~~~~~~~~~a~~~G~d   93 (288)
T 2nuw_A           17 VNVDALKTHAKNLLEKGIDAIFVNGTTGL--GPALSKDEKRQNLNALYDV-THKLIFQVGSLNLNDVMELVKFSNEMDIL   93 (288)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEETSTTTT--GGGSCHHHHHHHHHHHTTT-CSCEEEECCCSCHHHHHHHHHHHHTSCCS
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECEEHHH--HHHCCHHHHHHHHHHHHHH-CCCEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             89999999999999859998997821254--7768999999999987664-03433124530089999999988775402


Q ss_pred             EEE
Q ss_conf             998
Q gi|254780869|r  254 IVL  256 (559)
Q Consensus       254 v~i  256 (559)
                      -++
T Consensus        94 ~~~   96 (288)
T 2nuw_A           94 GVS   96 (288)
T ss_dssp             EEE
T ss_pred             CCC
T ss_conf             131


No 86 
>1xxx_A DHDPS, dihydrodipicolinate synthase; DAPA, RV2753C, lysine biosynthesis, structural genomics, PSI protein structure initiative; 2.28A {Mycobacterium tuberculosis} SCOP: c.1.10.1
Probab=74.33  E-value=3.6  Score=18.67  Aligned_cols=70  Identities=9%  Similarity=0.097  Sum_probs=49.9

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf             08788299996356457888777787999999999862798--3999941477899999999998718869984
Q gi|254780869|r  186 IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG--CVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL  257 (559)
Q Consensus       186 ~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g--rViv~~fasni~Ri~~i~~~a~~~~R~v~i~  257 (559)
                      +-+.||+.+.+-+|.++.  .+.|..+-.+-++.+.+.+++  .|++.+.+.+..-..+..+.|++.|=.-++.
T Consensus        44 l~~~Gv~Gi~v~G~tGE~--~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~i~v  115 (303)
T 1xxx_A           44 LVDQGCDGLVVSGTTGES--PTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLV  115 (303)
T ss_dssp             HHHTTCSEEEESSTTTTT--TTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             HHHCCCCEEEECCHHHHH--HHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             997799989978134657--768799999999999999289874898457666899999999999716986999


No 87 
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris}
Probab=73.83  E-value=3  Score=19.26  Aligned_cols=77  Identities=16%  Similarity=0.159  Sum_probs=52.1

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf             89889986----087882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG  251 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~  251 (559)
                      .|+..+.+    +-+.|++.+++-+|.+  ++.+.|..+-.+-++.+.+..++|  |++.+.+.+..-.....+.|++.|
T Consensus        22 iD~~~~~~~i~~l~~~Gv~gi~~~GttG--E~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G   99 (300)
T 3eb2_A           22 VRADVMGRLCDDLIQAGVHGLTPLGSTG--EFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLG   99 (300)
T ss_dssp             BCHHHHHHHHHHHHHTTCSCBBTTSGGG--TGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEECC--CHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             7999999999999975999899755324--36559999999999999986146885899457664889999997776449


Q ss_pred             CEEEE
Q ss_conf             86998
Q gi|254780869|r  252 RKIVL  256 (559)
Q Consensus       252 R~v~i  256 (559)
                      -.-++
T Consensus       100 ad~i~  104 (300)
T 3eb2_A          100 ADGIL  104 (300)
T ss_dssp             CSEEE
T ss_pred             CCEEE
T ss_conf             81798


No 88 
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=72.38  E-value=4  Score=18.35  Aligned_cols=31  Identities=19%  Similarity=0.457  Sum_probs=17.5

Q ss_pred             HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf             999997549539997045779999999878744786
Q gi|254780869|r  376 LKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIA  411 (559)
Q Consensus       376 l~~li~~ikPk~~IPvHGe~rhl~~h~~la~~~gv~  411 (559)
                      +..+-+++.-+  +|+-|=-   .-|.-||...|-+
T Consensus       251 i~~i~~~~~~~--~PilGIC---LGhQll~~a~G~~  281 (379)
T 1a9x_B          251 ITAIQKFLETD--IPVFGIC---LGHQLLALASGAK  281 (379)
T ss_dssp             HHHHHHHTTSC--CCEEEET---HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHCC--CCEEEEE---HHHHHHHHHHCCE
T ss_conf             99999998169--9889974---7789999983973


No 89 
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar binding protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=72.37  E-value=3.9  Score=18.49  Aligned_cols=107  Identities=18%  Similarity=0.227  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHCCEEEEECH--HHHHHHHHHHHC-CCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHH
Q ss_conf             47789999999999871886998448--699999988742-876776542265662238802089999669632688988
Q gi|254780869|r  234 SSSVSRIRSIIDIAEQIGRKIVLLGS--SLKRVVSVAIDV-GIIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALA  310 (559)
Q Consensus       234 asni~Ri~~i~~~a~~~~R~v~i~Gr--s~~~~~~~a~~~-g~l~~~~~~i~~~~~~~~p~~~~~ii~TGsqge~~a~l~  310 (559)
                      +..+.+..+.+.-+.+.+++|++.|.  |-..--..+.++ +.+....        ..+|   .+.+  +   ...+.+.
T Consensus        24 ~~~i~~aa~~i~~~~~~~~kI~~~GnGgSa~~A~h~a~~l~~~~~~~r--------~~l~---ai~l--~---~~~~~~t   87 (196)
T 2yva_A           24 PDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETER--------PSLP---AIAL--N---TDNVVLT   87 (196)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCC--------CCCC---EEES--S---CCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCC--------CCEE---EEEC--C---CCCHHHC
T ss_conf             999999999999999879989999886728899999999866100256--------6704---8972--6---7703202


Q ss_pred             HHCCCCC-CCC-------CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             5202777-653-------02689669999615886177899999765103113430
Q gi|254780869|r  311 QLSRGEM-RNV-------KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA  358 (559)
Q Consensus       311 ria~~~~-~~i-------~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~  358 (559)
                      -++++.. ..+       ..++||.+|.-|.-  ||.+.+-..+..-.++|.+++.
T Consensus        88 a~~nD~~~~~~f~~ql~~~~~~gDvli~iS~S--Gns~nvi~a~~~Ak~~g~~~i~  141 (196)
T 2yva_A           88 AIANDRLHDEVYAKQVRALGHAGDVLLAISTR--GNSRDIVKAVEAAVTRDMTIVA  141 (196)
T ss_dssp             HHTTSTTGGGHHHHHHHHHCCTTCEEEEECSS--SCCHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC--CCCCCHHHHHHHHHHCCCEEEE
T ss_conf             22373368899999999735789779998489--9974399999999986998999


No 90 
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=72.21  E-value=4.1  Score=18.33  Aligned_cols=77  Identities=14%  Similarity=0.152  Sum_probs=52.5

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf             89889986----087882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG  251 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~  251 (559)
                      .|++.+.+    +-+.||+.+++-+|.+  ++.+.|..+-..-++.+.+..+++  +++.+.+.+..-....++.|++.|
T Consensus        30 iD~~~~~~~i~~l~~~Gv~Gl~~~G~tG--E~~~Ls~eEr~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G  107 (301)
T 1xky_A           30 IDFAKTTKLVNYLIDNGTTAIVVGGTTG--ESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVG  107 (301)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESSTTT--TGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECEECC--HHHHCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf             4999999999999976999899786522--06558999999999999986046787688727366999999999999759


Q ss_pred             CEEEE
Q ss_conf             86998
Q gi|254780869|r  252 RKIVL  256 (559)
Q Consensus       252 R~v~i  256 (559)
                      =.-++
T Consensus       108 ad~i~  112 (301)
T 1xky_A          108 VDAVM  112 (301)
T ss_dssp             CSEEE
T ss_pred             CCEEE
T ss_conf             99999


No 91 
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthesis, lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=72.13  E-value=4.1  Score=18.31  Aligned_cols=77  Identities=17%  Similarity=0.108  Sum_probs=51.9

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf             89889986----08788299996356457888777787999999999862798--3999941477899999999998718
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG--CVLVTTFSSSVSRIRSIIDIAEQIG  251 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g--rViv~~fasni~Ri~~i~~~a~~~~  251 (559)
                      .|+..+.+    +-+.||+-+.+-+|.+  ++.+.|..+-.+-++.+.+..++  .+++.+.+.+.....+..+.|++.|
T Consensus        19 iD~~~l~~~i~~~~~~Gv~Gi~~~GttG--E~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G   96 (292)
T 2ojp_A           19 VCRASLKKLIDYHVASGTSAIVSVGTTG--ESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSG   96 (292)
T ss_dssp             BCHHHHHHHHHHHHHHTCCEEEESSTTT--TGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSS
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECEECC--HHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             7999999999999976999899684410--16558999999999997765189525998558898999999988898739


Q ss_pred             CEEEE
Q ss_conf             86998
Q gi|254780869|r  252 RKIVL  256 (559)
Q Consensus       252 R~v~i  256 (559)
                      -.-++
T Consensus        97 ad~v~  101 (292)
T 2ojp_A           97 IVGCL  101 (292)
T ss_dssp             CSEEE
T ss_pred             CCCEE
T ss_conf             96459


No 92 
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=71.79  E-value=4.1  Score=18.26  Aligned_cols=167  Identities=13%  Similarity=0.121  Sum_probs=72.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHH-HHHHHH-----CCEEEE-ECHH--H--HHHH-HHHH--HCC
Q ss_conf             77787999999999862798399994147789999999-999871-----886998-4486--9--9999-9887--428
Q gi|254780869|r  207 CISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSII-DIAEQI-----GRKIVL-LGSS--L--KRVV-SVAI--DVG  272 (559)
Q Consensus       207 ~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~-~~a~~~-----~R~v~i-~Grs--~--~~~~-~~a~--~~g  272 (559)
                      .||-.++.+.++++.++.. .|++-+.||.+.-..+-+ .+|+..     +++|.+ ..++  +  .-.+ .+++  +.|
T Consensus        64 ~ps~~~~~~~~~~l~~~g~-~ii~i~iSs~lSgty~~a~~a~~~~~~~~~~~~I~viDS~~~s~~~g~lv~~a~~~~~~G  142 (289)
T 1pzx_A           64 QPSPLAMKELFLPYAKENR-PCLYIAFSSKLSGTYQTAMAVRSELLDEYPEFRLTIIDSKCASLGQGLAVMKAVELAKQN  142 (289)
T ss_dssp             CCCHHHHHHHHHHHHHTTC-CEEEEECCTTTCSHHHHHHHHHHHHHHHSTTCCEEEEECCCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHCCCC-EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf             8999999999999851898-499998664051799999999998774479974999928970288999999999999849


Q ss_pred             CCCCCCCCCCHHHHCCCCCCCEEEEEECCC------CCHHHHHHHHCC--CCCCCCCCCCCCEEEEEEECCCCHHHHHHH
Q ss_conf             767765422656622388020899996696------326889885202--777653026896699996158861778999
Q gi|254780869|r  273 IIKKDQLFLSDESFGLYPREQLIVIATGSQ------GEPRSALAQLSR--GEMRNVKLAEKDTVIFSSRAIPGNEVAIGH  344 (559)
Q Consensus       273 ~l~~~~~~i~~~~~~~~p~~~~~ii~TGsq------ge~~a~l~ria~--~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~  344 (559)
                      . +.+..   .+.+..+.++-.+.++-.+-      |+.-.+-..+++  +-.+.+.++.|-...+  .-.-|..+++.+
T Consensus       143 ~-s~~ei---~~~l~~~~~~~~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIi~~~~G~i~~~--~k~R~~kka~~~  216 (289)
T 1pzx_A          143 T-PYNLL---CETIESYCRHMEHIFTVDNLDYLARGGRISKTAAAFGGLLNIKPLLHVEDGALIPL--EKWRGRKKVLKR  216 (289)
T ss_dssp             C-CHHHH---HHHHHHHHHTEEEEEECSCHHHHHHHTSCC----------CEEEEEEEETTEEEEE--EEEESHHHHHHH
T ss_pred             C-CHHHH---HHHHHHHHHCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHCEEEEEEEECCEEEEE--EEEECHHHHHHH
T ss_conf             9-99999---99999998367599997987999877983688999985008079999729959997--665009999999


Q ss_pred             HHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCC
Q ss_conf             9976510311343035666413157889789999997549
Q gi|254780869|r  345 IKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIR  384 (559)
Q Consensus       345 ~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ik  384 (559)
                      +.+.+.+.....    ....+..+--.+.++.+++.+.++
T Consensus       217 l~~~~~~~~~~~----~~~~i~i~~~~~~e~~~~l~~~l~  252 (289)
T 1pzx_A          217 MVELMGERGDDL----QKQTIGISHADDEETALELKQMIE  252 (289)
T ss_dssp             HHHHHHHHCSSG----GGSEEEEEESSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCC----CCCEEEEECCCCHHHHHHHHHHHH
T ss_conf             999999862478----972899992899999999999998


No 93 
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefaciens STR. C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=70.76  E-value=4.4  Score=18.11  Aligned_cols=70  Identities=10%  Similarity=0.078  Sum_probs=48.5

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf             087882999963564578887777879999999998627983--999941477899999999998718869984
Q gi|254780869|r  186 IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIGRKIVLL  257 (559)
Q Consensus       186 ~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~R~v~i~  257 (559)
                      +-+.|++.++.-+|.+  +..+.|..+-.+-++.+.+..+||  |++.+.+.+..-.....+.|++.|-..++.
T Consensus        64 li~~Gv~Gi~v~GstG--E~~~Lt~~Er~~l~~~~~~~~~gr~pvi~gv~~~s~~~ai~~ak~a~~~Gad~v~v  135 (332)
T 2r8w_A           64 LDAAEVDSVGILGSTG--IYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLL  135 (332)
T ss_dssp             HHHHTCSEEEESSTTT--TGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred             HHHCCCCEEEECEECC--CHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             9977999999782143--44248999999999999998389972999468677899999998886569986996


No 94 
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A*
Probab=68.15  E-value=4.9  Score=17.73  Aligned_cols=75  Identities=12%  Similarity=0.181  Sum_probs=46.9

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCE
Q ss_conf             89889986----08788299996356457888777787999999999862798399994147789999999999871886
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRK  253 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~  253 (559)
                      .|+..+.+    +-+.||+.+++-+|.++.  .+.|..+-.+-++...+ ..+.+++.+.+.+..-..+..+.|++.|-.
T Consensus        17 iD~~~~~~~i~~l~~~Gv~gi~i~GttGE~--~~Ls~~Er~~~~~~~~~-~~~~~i~~v~~~s~~~~i~~a~~a~~~Gad   93 (293)
T 1w3i_A           17 IDKEKLKIHAENLIRKGIDKLFVNGTTGLG--PSLSPEEKLENLKAVYD-VTNKIIFQVGGLNLDDAIRLAKLSKDFDIV   93 (293)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESSTTTTG--GGSCHHHHHHHHHHHHT-TCSCEEEECCCSCHHHHHHHHHHGGGSCCS
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCHHHHH--HHCCHHHHHHHHHHHHH-HCCCEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf             699999999999998699989978345646--65889999999999875-354135412556678778887777744965


Q ss_pred             EE
Q ss_conf             99
Q gi|254780869|r  254 IV  255 (559)
Q Consensus       254 v~  255 (559)
                      -+
T Consensus        94 ~~   95 (293)
T 1w3i_A           94 GI   95 (293)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             55


No 95 
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=67.77  E-value=5  Score=17.68  Aligned_cols=60  Identities=10%  Similarity=0.133  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHH-HHHCCEEEEECHHHHHHHHHHHHCCC
Q ss_conf             87999999999862798399994147789999999999-87188699844869999998874287
Q gi|254780869|r  210 EKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIA-EQIGRKIVLLGSSLKRVVSVAIDVGI  273 (559)
Q Consensus       210 E~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a-~~~~R~v~i~Grs~~~~~~~a~~~g~  273 (559)
                      -.++++.+.+.+ +.+. ++..+.+  -.=++-++++. .+-|..|.+-.-++...+.++...|.
T Consensus        40 v~~fE~~~a~~~-g~~~-av~~~SG--T~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~i~~~g~  100 (388)
T 1b9h_A           40 VNSFEREFAAHH-GAAH-ALAVTNG--THALELALQVMGVGPGTEVIVPAFTFISSSQAAQRLGA  100 (388)
T ss_dssp             HHHHHHHHHHHT-TCSE-EEEESCH--HHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHH-CCCE-EEEECCH--HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCC
T ss_conf             999999999997-8794-9996787--99999999985999849999789743777799998499


No 96 
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, cytoplasm, schiff base, carbohydrate metabolism; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 1hl2_A 1fdy_A 1fdz_A 1nal_1
Probab=67.08  E-value=5.1  Score=17.59  Aligned_cols=77  Identities=21%  Similarity=0.159  Sum_probs=51.0

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf             89889986----087882999963564578887777879999999998627983--999941477899999999998718
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG  251 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~  251 (559)
                      .|++.+.+    +-+.|++.+++-+|.+  ++.+.|..+-..-++.+.+..++|  +++.+.+.+..-....++.|++.|
T Consensus        29 iD~~~~~~~i~~~i~~Gv~gi~v~G~tG--E~~~Ls~eEr~~li~~~~~~~~~~~~vi~g~~~~~~~~ai~~a~~A~~~G  106 (303)
T 2wkj_A           29 LDKASLRRLVQFNIQQGIDGLYVGGSTG--EAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYG  106 (303)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEEESSTTT--TGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECEECC--CHHHCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             4999999999999986999899776754--23348999999999999997179987899747788999999999999839


Q ss_pred             CEEEE
Q ss_conf             86998
Q gi|254780869|r  252 RKIVL  256 (559)
Q Consensus       252 R~v~i  256 (559)
                      -.-++
T Consensus       107 ad~i~  111 (303)
T 2wkj_A          107 FDAVS  111 (303)
T ss_dssp             CSEEE
T ss_pred             CCEEE
T ss_conf             99886


No 97 
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=66.30  E-value=5.3  Score=17.48  Aligned_cols=76  Identities=17%  Similarity=0.164  Sum_probs=51.4

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCE
Q ss_conf             89889986----08788299996356457888777787999999999862798399994147789999999999871886
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRK  253 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~  253 (559)
                      .|+..+.+    +.+.||+.++.-+|.++.  .+.|..+-.+-++.+++ .+-.|++.+-+.+........+.|++.|=.
T Consensus        44 ID~~~~~~~i~~l~~~Gv~Gi~v~GstGE~--~~Ls~eEr~~l~~~~v~-~rvpvi~Gv~~~st~eai~~a~~a~~~Gad  120 (344)
T 2hmc_A           44 PDFDALVRKGKELIADGMSAVVYCGSMGDW--PLLTDEQRMEGVERLVK-AGIPVIVGTGAVNTASAVAHAVHAQKVGAK  120 (344)
T ss_dssp             BCHHHHHHHHHHHHHTTCCCEEESSGGGTG--GGSCHHHHHHHHHHHHH-TTCCEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECEECCCH--HHCCHHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf             299999999999997799999977543205--45899999999999973-388689967878899999999999983997


Q ss_pred             EEE
Q ss_conf             998
Q gi|254780869|r  254 IVL  256 (559)
Q Consensus       254 v~i  256 (559)
                      -++
T Consensus       121 ~vl  123 (344)
T 2hmc_A          121 GLM  123 (344)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             454


No 98 
>2a9v_A GMP synthase; NP_394403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=64.72  E-value=3.9  Score=18.48  Aligned_cols=78  Identities=14%  Similarity=0.152  Sum_probs=47.1

Q ss_pred             CCEEEEEECCCCCCCC-----CCCCEEE-ECCCHHHHHHHHHCCCEEEEECCCCCCCCCH---HHHHH---HCCCCEECC
Q ss_conf             8648999776767888-----7675028-7079579876641246899605430121607---88898---629977929
Q gi|254780869|r   31 SRKWIMIDCGVSFPKD-----DLPGVDL-VFPDITFIMKERKNLMAIFITHAHEDHYGAL---HDLWS---FLHVPVYAS   98 (559)
Q Consensus        31 ~~~~iiiD~G~~fp~~-----~~~gid~-iiPd~~~l~~~~~~i~~i~iTH~H~DHiGal---p~l~~---~~~~pIY~s   98 (559)
                      --.+++||+|..|..+     ...|++. |+|. +...+..++.+||+|+=+..+..-..   ..+.+   +.+.||.+-
T Consensus        13 m~~i~iiD~g~~~~~~i~r~L~~lG~~~~vv~~-~~~~~~l~~~dgiIl~GG~~~~~~~~~~~~~l~~~~~~~~~PiLGI   91 (212)
T 2a9v_A           13 MLKIYVVDNGGQWTHREWRVLRELGVDTKIVPN-DIDSSELDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGI   91 (212)
T ss_dssp             CCBEEEEEESCCTTCHHHHHHHHTTCBCCEEET-TSCGGGGTTCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEEEE
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             667999999876899999999978983899969-7999998369919997999843434378999999998579989987


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999999
Q gi|254780869|r   99 PFAIGLLEAKR  109 (559)
Q Consensus        99 ~~t~~li~~~~  109 (559)
                      =+...+|-..+
T Consensus        92 ClG~QlL~~~~  102 (212)
T 2a9v_A           92 CVGAQFIALHF  102 (212)
T ss_dssp             THHHHHHHHHT
T ss_pred             HHHHHHHHHHC
T ss_conf             59889999871


No 99 
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=64.22  E-value=5.8  Score=17.21  Aligned_cols=16  Identities=13%  Similarity=0.148  Sum_probs=8.0

Q ss_pred             HHHHHCCCEEEEECCC
Q ss_conf             7664124689960543
Q gi|254780869|r   62 MKERKNLMAIFITHAH   77 (559)
Q Consensus        62 ~~~~~~i~~i~iTH~H   77 (559)
                      ++..++.+|++||||-
T Consensus        96 ~~~~~~~dGvVVtHGT  111 (358)
T 2him_A           96 KAHYDDYDGFVILHGT  111 (358)
T ss_dssp             HHHGGGCSEEEEECCS
T ss_pred             HHHHCCCCCEEEECCC
T ss_conf             9852369978997586


No 100
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino- acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; 1.45A {Staphylococcus aureus} PDB: 3di1_A 3di0_A
Probab=64.11  E-value=5.8  Score=17.20  Aligned_cols=78  Identities=13%  Similarity=0.158  Sum_probs=53.8

Q ss_pred             CCHHHHH----HCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf             8988998----608788299996356457888777787999999999862798--3999941477899999999998718
Q gi|254780869|r  178 TDKDSLC----AIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG--CVLVTTFSSSVSRIRSIIDIAEQIG  251 (559)
Q Consensus       178 ~d~~~l~----~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g--rViv~~fasni~Ri~~i~~~a~~~~  251 (559)
                      .|+..+.    .+-++||+.++.-+|.+  ++.+.|..+-.+-++.+.+...+  .|++.+.+.+........+.|++.|
T Consensus        20 iD~~~~~~~i~~l~~~Gv~gl~~~GttG--E~~~Ls~~Er~~l~~~~~e~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~G   97 (292)
T 3daq_A           20 VNLEALKAHVNFLLENNAQAIIVNGTTA--ESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALG   97 (292)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEEESSGGG--TGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCHHH--HHHHCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf             8999999999999977999999780144--46668999999999988885135686673367888999999999999659


Q ss_pred             CEEEEE
Q ss_conf             869984
Q gi|254780869|r  252 RKIVLL  257 (559)
Q Consensus       252 R~v~i~  257 (559)
                      =.-++.
T Consensus        98 ad~v~v  103 (292)
T 3daq_A           98 ADAIML  103 (292)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
T ss_conf             998999


No 101
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A*
Probab=63.96  E-value=5.9  Score=17.18  Aligned_cols=39  Identities=13%  Similarity=0.216  Sum_probs=19.8

Q ss_pred             CCCCCHHHHHHHHHHCC---C---CEEEEECC------CHHHHHHHHHHHHH
Q ss_conf             57889789999997549---5---39997045------77999999987874
Q gi|254780869|r  368 SGHPYPNDLKRMYQWIR---P---QVLVAIHG------EPLHLVAHKELALQ  407 (559)
Q Consensus       368 SGHa~~edl~~li~~ik---P---k~~IPvHG------e~rhl~~h~~la~~  407 (559)
                      |=.++.+-++..++.++   +   +..|-|-|      ..+ -..|.++...
T Consensus       324 sya~nP~s~~~aL~~l~~~~~~~~gr~I~VlG~m~e~G~~~-~~~h~~i~~~  374 (454)
T 2am1_A          324 VYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQS-VQLHNQMILS  374 (454)
T ss_dssp             CSCCSHHHHHHHHHHHTTSCCCSSCEEEEEEECCCCCCTTH-HHHHHHGGGG
T ss_pred             ECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHCCCHH-HHHHHHHHHH
T ss_conf             23699999999999998633203786699978620015358-9999999999


No 102
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A
Probab=63.38  E-value=6  Score=17.11  Aligned_cols=94  Identities=17%  Similarity=0.108  Sum_probs=58.2

Q ss_pred             ECCCCEECCCCCCCC-CCCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECH
Q ss_conf             833402467766542-389889986----087882999963564578887777879999999998627983--9999414
Q gi|254780869|r  162 HTGDWKLDDDAILGD-VTDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFS  234 (559)
Q Consensus       162 ytGDfk~d~~p~~g~-~~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fa  234 (559)
                      |.|=|-.=.+|..-. ..|+..+.+    +-+.||+.++.-+|.  .++.+.|..+-.+-++.+.+..++|  |++.+.+
T Consensus        32 f~Gv~~a~~TPf~~dg~ID~~~l~~~i~~l~~~Gv~Gi~v~Gst--GE~~~Ls~eEr~~l~~~~~~~~~~r~pvi~gv~~  109 (343)
T 2v9d_A           32 FTGIIPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSG--GEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGG  109 (343)
T ss_dssp             SCEECCEECCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSTT--TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCS
T ss_pred             CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECEEH--HHHHHCCHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf             66440567776896849599999999999998599989977557--7467672999999999999973898827985487


Q ss_pred             HHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf             77899999999998718869984
Q gi|254780869|r  235 SSVSRIRSIIDIAEQIGRKIVLL  257 (559)
Q Consensus       235 sni~Ri~~i~~~a~~~~R~v~i~  257 (559)
                      .+.......++.|++.|-.-++.
T Consensus       110 ~st~~~~~~a~~a~~~G~dav~v  132 (343)
T 2v9d_A          110 TNARETIELSQHAQQAGADGIVV  132 (343)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             88999999999998538985884


No 103
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protein structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae}
Probab=61.12  E-value=6.6  Score=16.83  Aligned_cols=168  Identities=12%  Similarity=0.115  Sum_probs=76.3

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHH-HHHHHHHHH-CCEEEEEC-HH----HHHHHHHHH---HCCCCC
Q ss_conf             777787999999999862798399994147789999-999999871-88699844-86----999999887---428767
Q gi|254780869|r  206 TCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIR-SIIDIAEQI-GRKIVLLG-SS----LKRVVSVAI---DVGIIK  275 (559)
Q Consensus       206 ~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~-~i~~~a~~~-~R~v~i~G-rs----~~~~~~~a~---~~g~l~  275 (559)
                      ..||-.++.+.++++.++.--.|++-+.+|.+.-.. .+..++++. +++|.+.. ++    +.-.+.-|.   +.|+ .
T Consensus        65 S~ps~~~~~~~~~~l~~~gyd~ii~i~iSs~lSgty~~a~~~~~~~~~~~I~ViDS~~~s~~~~~~v~~a~~~~~~G~-s  143 (285)
T 3lup_A           65 SQPSLAELDDLLCQLEKEGYTHVLGLFIAAGISGFWQNIQFLIEEHPNLTIAFPDTKITSAPQGNLVRNALMCSREGM-D  143 (285)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCCEEEECCSCGGGCTHHHHHTTHHHHCTTSEEECCCCCCCHHHHHHHHHHHHHHHTTTC-C
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC-C
T ss_conf             799989999999999976998799995451676899999999986899809998188611768999999999998499-9


Q ss_pred             CCCCCCCHHHHCCCCCCCEEEEEECCC------CCHHHHHHHHCC--CCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf             765422656622388020899996696------326889885202--777653026896699996158861778999997
Q gi|254780869|r  276 KDQLFLSDESFGLYPREQLIVIATGSQ------GEPRSALAQLSR--GEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKN  347 (559)
Q Consensus       276 ~~~~~i~~~~~~~~p~~~~~ii~TGsq------ge~~a~l~ria~--~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n  347 (559)
                      ....   .+.+..+.++-.+.++..+-      |+.-.+.+.+++  +-.+-+++.+...+.. ..-.-|..+++.++.+
T Consensus       144 ~eei---~~~l~~~~~~~~~~~~v~~L~~L~kgGRis~~~a~ig~lL~ikPIl~~~~~G~l~~-~~k~Rg~kka~~~l~~  219 (285)
T 3lup_A          144 FDVI---VNKIQSQIEKIEGFIVVNDLNHLVKGGRLSNGSAIIGNLLSIKPVLHFNEEGKIVV-YEKVRTEKKALKRLAE  219 (285)
T ss_dssp             HHHH---HHHHHHHHTTCEEEEECSCTHHHHHHTCBTTHHHHHHHHTTSCCEEEECTTSCEEE-EECCSSHHHHHHHHHH
T ss_pred             HHHH---HHHHHHHHHHCEEEEEECCHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCEEE-EEEECCHHHHHHHHHH
T ss_conf             8999---99999998515799994978999868987606889985008779999988997887-5300458789999999


Q ss_pred             HHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHC
Q ss_conf             651031134303566641315788978999999754
Q gi|254780869|r  348 RLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWI  383 (559)
Q Consensus       348 ~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~i  383 (559)
                      .+.+...+     ....+..+-..+.++..++.+.+
T Consensus       220 ~i~~~~~~-----~~~~i~i~~~~~~e~a~~l~~~l  250 (285)
T 3lup_A          220 IVKEMTAD-----GEYDIAIIHSRAQDKAEQLYNLL  250 (285)
T ss_dssp             HHHHHGGG-----SCEEEEEEESSCHHHHHHHHHHH
T ss_pred             HHHHHHCC-----CCCEEEEEECCCHHHHHHHHHHH
T ss_conf             99986169-----98169999899999999999999


No 104
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=59.85  E-value=6.9  Score=16.68  Aligned_cols=77  Identities=14%  Similarity=0.120  Sum_probs=52.4

Q ss_pred             CCHHHHHH-----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHH
Q ss_conf             89889986-----087882999963564578887777879999999998627983--99994147789999999999871
Q gi|254780869|r  178 TDKDSLCA-----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQI  250 (559)
Q Consensus       178 ~d~~~l~~-----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~  250 (559)
                      .|+..+.+     +.+.||+.+++-+|.+  ++.+.|..+-.+-++.+.+..+++  |++.+.+.+..-..++.+.|++.
T Consensus        21 iD~~~~~~~i~~~i~~~Gv~gi~~~GstG--E~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~la~~a~~~   98 (293)
T 1f6k_A           21 INEKGLRQIIRHNIDKMKVDGLYVGGSTG--ENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATEL   98 (293)
T ss_dssp             BCHHHHHHHHHHHHHTSCCSEEEESSGGG--TGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEECCCCC--CHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf             39999999999999827999899792163--0544889999989988776327884299835767799999999999975


Q ss_pred             CCEEEE
Q ss_conf             886998
Q gi|254780869|r  251 GRKIVL  256 (559)
Q Consensus       251 ~R~v~i  256 (559)
                      |-.-++
T Consensus        99 Gad~v~  104 (293)
T 1f6k_A           99 GYDCLS  104 (293)
T ss_dssp             TCSEEE
T ss_pred             CCCEEE
T ss_conf             999777


No 105
>2pcq_A Putative dihidrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, structural genomics, NPPSFA; 2.10A {Thermus thermophilus HB8}
Probab=59.64  E-value=4.1  Score=18.26  Aligned_cols=63  Identities=13%  Similarity=0.163  Sum_probs=41.4

Q ss_pred             CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHHHCCEEEE
Q ss_conf             788299996356457888777787999999999862798--399994147789999999999871886998
Q gi|254780869|r  188 NEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG--CVLVTTFSSSVSRIRSIIDIAEQIGRKIVL  256 (559)
Q Consensus       188 ~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g--rViv~~fasni~Ri~~i~~~a~~~~R~v~i  256 (559)
                      +.|++.+++-+|.++  +.+.|..+-.+    +++...+  .+++.+.+.+.......++.|++.|=.-++
T Consensus        29 ~~gv~gi~~~GstGE--~~~Ls~~Er~~----v~~~v~~~~pvi~gv~~~s~~~~i~~a~~a~~~G~d~v~   93 (283)
T 2pcq_A           29 EPLVDGLLVYGSNGE--GVHLTPEERAR----GLRALRPRKPFLVGLMEETLPQAEGALLEAKAAGAMALL   93 (283)
T ss_dssp             GGGSSCCEETCTTTT--GGGSCHHHHHH----HHHTCCCSSCCEEEECCSSHHHHHHHHHHHHHHTCSEEE
T ss_pred             HCCCCEEEECEECHH--HHHCCHHHHHH----HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             808998997820400--66589999999----998764139879996787568899998888864998799


No 106
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris}
Probab=59.36  E-value=7  Score=16.63  Aligned_cols=78  Identities=15%  Similarity=0.161  Sum_probs=52.4

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHCC
Q ss_conf             89889986----08788299996356457888777787999999999862798-39999414778999999999987188
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG-CVLVTTFSSSVSRIRSIIDIAEQIGR  252 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g-rViv~~fasni~Ri~~i~~~a~~~~R  252 (559)
                      .|+..+.+    +-+.||+.+++-+|.+  ++.+.|..+-.+-++.+.+.+++ .|++.+.+.+..-....++.|++.|=
T Consensus        26 iD~~~l~~~i~~li~~Gv~Gi~v~GstG--E~~~Ls~eEr~~l~~~~~~~~~~~~vi~gv~~~st~~ai~la~~a~~~Ga  103 (313)
T 3dz1_A           26 IDDVSIDRLTDFYAEVGCEGVTVLGILG--EAPKLDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGA  103 (313)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEEESTGGG--TGGGSCHHHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEEECC--CHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf             4999999999999975999899755766--62338999999999999986599768996265104899999999986598


Q ss_pred             EEEEE
Q ss_conf             69984
Q gi|254780869|r  253 KIVLL  257 (559)
Q Consensus       253 ~v~i~  257 (559)
                      .-++.
T Consensus       104 d~i~v  108 (313)
T 3dz1_A          104 AGVMI  108 (313)
T ss_dssp             SEEEE
T ss_pred             CEEEE
T ss_conf             56753


No 107
>3cvj_A Putative phosphoheptose isomerase; NP_244191.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=57.76  E-value=7.4  Score=16.44  Aligned_cols=36  Identities=22%  Similarity=0.347  Sum_probs=29.3

Q ss_pred             CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             02689669999615886177899999765103113430
Q gi|254780869|r  321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA  358 (559)
Q Consensus       321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~  358 (559)
                      .++++|.+|.-|.-  |+-+.+-.+.....+.|++++.
T Consensus       105 ~i~~~DvvI~iS~S--G~t~~vi~a~~~AK~~G~~vIa  140 (243)
T 3cvj_A          105 QVTNKDVIMIISNS--GRNTVPVEMAIESRNIGAKVIA  140 (243)
T ss_dssp             TCCTTCEEEEECSS--CCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCEEEEECCC--CCCHHHHHHHHHHHHCCCEEEE
T ss_conf             79999999997789--9999999999999987994999


No 108
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis W83}
Probab=57.01  E-value=7.6  Score=16.36  Aligned_cols=45  Identities=9%  Similarity=0.220  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHCCCCEEEEECHHH-------HHHHHHHHHHHHHHCCEEEEE
Q ss_conf             999999998627983999941477-------899999999998718869984
Q gi|254780869|r  213 IKKNIYDIMKNAKGCVLVTTFSSS-------VSRIRSIIDIAEQIGRKIVLL  257 (559)
Q Consensus       213 v~~~i~~~~~~~~grViv~~fasn-------i~Ri~~i~~~a~~~~R~v~i~  257 (559)
                      +.+.+++.....+-+.++-|..+|       .+++++|+++|++.+-.|+.+
T Consensus       170 l~~~~~~~~~~~~~~~ivl~~P~NPTG~~~s~e~~~~i~~~a~~~~~~vi~D  221 (437)
T 3g0t_A          170 LREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIED  221 (437)
T ss_dssp             HHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEC
T ss_conf             2799999853799459995899899877531268999988752587689855


No 109
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=55.83  E-value=8  Score=16.22  Aligned_cols=65  Identities=9%  Similarity=0.095  Sum_probs=44.5

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHCC
Q ss_conf             087882999963564578887777879999999998627983--9999414778999999999987188
Q gi|254780869|r  186 IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIGR  252 (559)
Q Consensus       186 ~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~R  252 (559)
                      +-+.||+.++.-+|.+  ++.+.|..+-.+-++.+.+..+||  +++.+.+.+........+.|.+.+-
T Consensus        37 l~~~Gv~gi~v~GstG--E~~~Ls~eEr~~l~~~~~~~~~~~~pvi~g~~~~~~~~~~~la~~a~~~g~  103 (311)
T 3h5d_A           37 LLAHHTDGILLAGTTA--ESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGG  103 (311)
T ss_dssp             HHHTTCCCEEESSTTT--TGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCC
T ss_pred             HHHCCCCEEEECEEHH--HHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf             9986999899686235--066589999999999999984588868985576202555899999988633


No 110
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein structure initiative; HET: PG6; 2.00A {Ruminococcus gnavus atcc 29149}
Probab=50.94  E-value=9.4  Score=15.69  Aligned_cols=157  Identities=11%  Similarity=0.108  Sum_probs=63.3

Q ss_pred             HHHHHHHCCCCEEEEECHHHHHH-HHHHHHHHHHH-----CCEEEEEC-HH----HHHHHHHHHH---CCCCCCCCCCCC
Q ss_conf             99998627983999941477899-99999999871-----88699844-86----9999998874---287677654226
Q gi|254780869|r  217 IYDIMKNAKGCVLVTTFSSSVSR-IRSIIDIAEQI-----GRKIVLLG-SS----LKRVVSVAID---VGIIKKDQLFLS  282 (559)
Q Consensus       217 i~~~~~~~~grViv~~fasni~R-i~~i~~~a~~~-----~R~v~i~G-rs----~~~~~~~a~~---~g~l~~~~~~i~  282 (559)
                      +.+.++..--.|++-+.||.+.- .++...+++..     +++|.+.. ++    +.-.+.-|.+   .|. +.+...  
T Consensus        88 ~~e~~~~~~d~vi~i~iSs~lSgty~~a~~a~~~~~~e~~~~~I~ViDS~~~s~~~g~lv~~A~~l~~~G~-s~eeI~--  164 (298)
T 3jr7_A           88 YMESYHCDAERIYVVTLSAELSGSYNSAVLGKNLYEEEYGEKQIHVFNSRSASVGETLIALKVQQCEKAGM-TFEEVV--  164 (298)
T ss_dssp             HHHHHCSSCSEEEEEESCTTTCSHHHHHHHHHHHHHHHHCCCEEEEEECSSCTHHHHHHHHHHHHHHHTTC-CHHHHH--
T ss_pred             HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC-CHHHHH--
T ss_conf             99999846895799965740202799999999998876699839998488641768999999999998599-999999--


Q ss_pred             HHHHCCCC-CCCEEEEEECCCCCHHHHHHHHCC---------CCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf             56622388-020899996696326889885202---------77765302689669999615886177899999765103
Q gi|254780869|r  283 DESFGLYP-REQLIVIATGSQGEPRSALAQLSR---------GEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQ  352 (559)
Q Consensus       283 ~~~~~~~p-~~~~~ii~TGsqge~~a~l~ria~---------~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~  352 (559)
                       +.+..+. +....+ +-.+- +.+.+-.|++.         +-.+-|++.+...+....+ ..|.++++.++.+.+.+.
T Consensus       165 -~~l~~~~~~~~~~f-~v~~L-~~L~kgGRIs~~~~~ig~lL~ikPIi~~~~~G~i~~~~k-~Rg~kkai~~l~~~i~~~  240 (298)
T 3jr7_A          165 -ESVECYIEEQHTYF-VLENL-DTLRKNGRLTGIKSLVAGALNIKPIMGSTPQGTICQKEK-ARGMKKALVKMADCVAAD  240 (298)
T ss_dssp             -HHHHHHHHHCCEEE-ECSCC-HHHHHTTCSTTCCC--CCCTTEEEEEEECTTSCEEEEEE-EESHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHCEEEE-EECCH-HHHHHCCCCCHHHHHHHHHHCCEEEEEECCCCCEEHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf             -99999986247999-96987-999877986067999987537569999867996741655-652999999999999987


Q ss_pred             CEEEEECCCCCCEECCCCCCHHHHHHHHHHCC
Q ss_conf             11343035666413157889789999997549
Q gi|254780869|r  353 GVRVIAEDAECPVHVSGHPYPNDLKRMYQWIR  384 (559)
Q Consensus       353 g~~vi~~~~~~~iH~SGHa~~edl~~li~~ik  384 (559)
                      ..+    .....++++.-.+.++.+++.+.++
T Consensus       241 ~~~----~~~~~v~i~~~~~~e~a~~l~~~l~  268 (298)
T 3jr7_A          241 VVN----AGDKILAIAHCNCEERAKEVQRLLK  268 (298)
T ss_dssp             CCS----GGGCEEEEEESSCHHHHHHHHHHHH
T ss_pred             HCC----CCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf             325----7981899996989999999999998


No 111
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=49.93  E-value=9.8  Score=15.59  Aligned_cols=43  Identities=7%  Similarity=0.285  Sum_probs=31.7

Q ss_pred             HHHHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf             9999998627-983999941-477899999999998718869984
Q gi|254780869|r  215 KNIYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLL  257 (559)
Q Consensus       215 ~~i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~  257 (559)
                      +++.++++.+ ++.--|++| ..|++-++.++++|++.+.+|.+.
T Consensus        15 ~nlk~il~~A~~~~yAV~AfNv~n~e~~~Avi~AAee~~sPvIlq   59 (358)
T 1dos_A           15 DDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQ   59 (358)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             999999999998796799987798999999999999978898998


No 112
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=48.56  E-value=10  Score=15.44  Aligned_cols=40  Identities=15%  Similarity=-0.011  Sum_probs=27.3

Q ss_pred             CCEEEEECCCCCCCCCHHHH--HHHCCCCEECCHHHHHHHHH
Q ss_conf             46899605430121607888--98629977929999999999
Q gi|254780869|r   68 LMAIFITHAHEDHYGALHDL--WSFLHVPVYASPFAIGLLEA  107 (559)
Q Consensus        68 i~~i~iTH~H~DHiGalp~l--~~~~~~pIY~s~~t~~li~~  107 (559)
                      -+|||||=.-.|--..++..  +.++++.||+|+.|+..++.
T Consensus        24 ~kgvliSv~d~dK~~~~~~a~~L~~lGf~i~AT~GTa~~L~~   65 (143)
T 2yvq_A           24 QKGILIGIQQSFRPRFLGVAEQLHNEGFKLFATEATSDWLNA   65 (143)
T ss_dssp             CSEEEEECCGGGHHHHHHHHHHHHTTTCEEEEEHHHHHHHHH
T ss_pred             CCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
T ss_conf             988899986763778999999999749678973589999997


No 113
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV}
Probab=46.94  E-value=11  Score=15.27  Aligned_cols=67  Identities=21%  Similarity=0.160  Sum_probs=32.4

Q ss_pred             HHHHH-CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECH
Q ss_conf             89986-08788299996356457888777787999999999862798399994147789999999999871886998448
Q gi|254780869|r  181 DSLCA-IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGS  259 (559)
Q Consensus       181 ~~l~~-~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Gr  259 (559)
                      ..|++ +.+.|..++..|-..........+..                    .+...+.++...++.....+ ++++.|.
T Consensus        23 ~~la~~l~~~G~~v~~~d~~g~g~s~~~~~~~--------------------~~~~~v~~~~~~~~~~~~~~-~i~l~G~   81 (176)
T 2qjw_A           23 TALAEVAERLGWTHERPDFTDLDARRDLGQLG--------------------DVRGRLQRLLEIARAATEKG-PVVLAGS   81 (176)
T ss_dssp             HHHHHHHHHTTCEEECCCCHHHHTCGGGCTTC--------------------CHHHHHHHHHHHHHHHHTTS-CEEEEEE
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC--------------------CHHHHHHHHHHHHHHCCCCC-CEEEEEE
T ss_conf             99999999789989993578889999988779--------------------99999999999999648899-8899996


Q ss_pred             HHHHHHHHH
Q ss_conf             699999988
Q gi|254780869|r  260 SLKRVVSVA  268 (559)
Q Consensus       260 s~~~~~~~a  268 (559)
                      ||--.+-..
T Consensus        82 S~Gg~~a~~   90 (176)
T 2qjw_A           82 SLGSYIAAQ   90 (176)
T ss_dssp             THHHHHHHH
T ss_pred             CCHHHHHHH
T ss_conf             828999999


No 114
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, , PSI-2, protein structure initiative; 1.80A {Bacillus clausii ksm-k16}
Probab=46.68  E-value=11  Score=15.24  Aligned_cols=77  Identities=16%  Similarity=0.145  Sum_probs=47.8

Q ss_pred             CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECHHHHHHHHHHHHHHHHHCC
Q ss_conf             89889986----0878829999635645788877778799999999986279839-999414778999999999987188
Q gi|254780869|r  178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCV-LVTTFSSSVSRIRSIIDIAEQIGR  252 (559)
Q Consensus       178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grV-iv~~fasni~Ri~~i~~~a~~~~R  252 (559)
                      .|+..+.+    +-+.||+.+++-+|.++  ..+.|..+-.+-++.+.+..++|+ +++.-+.+.....+..+.|++.|=
T Consensus        30 ID~~~l~~~i~~l~~~Gv~Gi~~~GstGE--~~~Ls~~Er~~l~~~~~~~~~~~~~vi~g~~~st~~~i~~a~~a~~~Ga  107 (316)
T 3e96_A           30 IDWHHYKETVDRIVDNGIDVIVPCGNTSE--FYALSLEEAKEEVRRTVEYVHGRALVVAGIGYATSTAIELGNAAKAAGA  107 (316)
T ss_dssp             BCHHHHHHHHHHHHTTTCCEECTTSGGGT--GGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECEECCC--HHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf             99999999999999759998996856234--5458999999999999998089842883565448999999989997599


Q ss_pred             EEEE
Q ss_conf             6998
Q gi|254780869|r  253 KIVL  256 (559)
Q Consensus       253 ~v~i  256 (559)
                      .-++
T Consensus       108 d~i~  111 (316)
T 3e96_A          108 DAVM  111 (316)
T ss_dssp             SEEE
T ss_pred             CEEE
T ss_conf             9998


No 115
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative reductase, PSI; 1.28A {Pseudomonas aeruginosa PAO1} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=46.52  E-value=11  Score=15.23  Aligned_cols=31  Identities=6%  Similarity=0.155  Sum_probs=13.1

Q ss_pred             CCCCCCEEEEEEECCCCHHH-HHHHHHHHHHC
Q ss_conf             02689669999615886177-89999976510
Q gi|254780869|r  321 KLAEKDTVIFSSRAIPGNEV-AIGHIKNRLVE  351 (559)
Q Consensus       321 ~l~~~D~vI~ss~~ipGnE~-~~~~~~n~l~~  351 (559)
                      ++.+-|.+||+|+.-.|+=. ..-.++||+.+
T Consensus        69 ~i~~AD~~Ii~sPeY~~s~pg~LKn~iD~~~~  100 (193)
T 1rtt_A           69 QIRAADALLFATPEYNYSMAGVLKNAIDWASR  100 (193)
T ss_dssp             HHHHCSEEEEECCEETTEECHHHHHHHHHHTC
T ss_pred             HHHCCCEEEEECHHHHHHCCHHHHHHHHHHHC
T ss_conf             98638958996178863325999999998643


No 116
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=45.28  E-value=11  Score=15.10  Aligned_cols=36  Identities=17%  Similarity=0.425  Sum_probs=24.3

Q ss_pred             CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             02689669999615886177899999765103113430
Q gi|254780869|r  321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA  358 (559)
Q Consensus       321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~  358 (559)
                      .++++|.+|+-|..  |+.+.+..+...+.+.|++++.
T Consensus        86 ~~~~~DvvI~iS~s--G~t~~~~~~~~~ak~~g~~vI~  121 (200)
T 1vim_A           86 RITDQDVLVGISGS--GETTSVVNISKKAKDIGSKLVA  121 (200)
T ss_dssp             CCCTTCEEEEECSS--SCCHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCEEEEECCC--CCCCCHHHHHHHHHHCCCEEEE
T ss_conf             38999989985799--7742169999999987996999


No 117
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, core fucose, SH3 domain; 2.61A {Homo sapiens}
Probab=45.24  E-value=11  Score=15.32  Aligned_cols=15  Identities=13%  Similarity=0.142  Sum_probs=6.6

Q ss_pred             HHHHHHHCCCCEEEE
Q ss_conf             999997549539997
Q gi|254780869|r  376 LKRMYQWIRPQVLVA  390 (559)
Q Consensus       376 l~~li~~ikPk~~IP  390 (559)
                      +..|+=+.+=.+||.
T Consensus       389 L~Dl~LLS~cD~~Vc  403 (526)
T 2de0_X          389 ILDIHFLSQADFLVC  403 (526)
T ss_dssp             HHHHHHHHHSSEEEE
T ss_pred             HHHHHHHHHCCEEEE
T ss_conf             999999982996999


No 118
>3egl_A DEGV family protein; alpha-beta-alpha sandwich, methylated lysines, structural genomics, PSI-2; HET: MLY MSE PLM; 2.41A {Corynebacterium glutamicum atcc 13032}
Probab=44.20  E-value=12  Score=14.98  Aligned_cols=51  Identities=12%  Similarity=0.147  Sum_probs=30.4

Q ss_pred             CCHHHHHHHHHHHHHHCC-CCEEEEECHHHHHH-HHHHHHHHHHH-CCEEEEEC
Q ss_conf             778799999999986279-83999941477899-99999999871-88699844
Q gi|254780869|r  208 ISEKGIKKNIYDIMKNAK-GCVLVTTFSSSVSR-IRSIIDIAEQI-GRKIVLLG  258 (559)
Q Consensus       208 ~sE~~v~~~i~~~~~~~~-grViv~~fasni~R-i~~i~~~a~~~-~R~v~i~G  258 (559)
                      +|-.++.+.+.+.+++.. -.|++-+.||.+.- .+++..+|... +++|.+..
T Consensus        45 ~~~~~~~~~~~~~l~~~g~d~ii~i~iSs~LSgty~~a~~aa~~~~~~~I~ViD   98 (277)
T 3egl_A           45 LSSLELAASYARQLERGGDDGVLALHISXELSSTWSAAVTAAAVFDDDSVRVVD   98 (277)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSCEEEECSCTTTCSHHHHHHHHHTTSSTTSEEEEC
T ss_pred             CCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf             997999999999998579981899984732748999999998546899699976


No 119
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*
Probab=43.34  E-value=12  Score=14.89  Aligned_cols=84  Identities=15%  Similarity=0.156  Sum_probs=54.9

Q ss_pred             EEEEEC-CCCCHHHHHHHHCCCCCCCCCCCCCCE-EEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCC
Q ss_conf             999966-963268898852027776530268966-999961588617789999976510311343035666413157889
Q gi|254780869|r  295 IVIATG-SQGEPRSALAQLSRGEMRNVKLAEKDT-VIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPY  372 (559)
Q Consensus       295 ~ii~TG-sqge~~a~l~ria~~~~~~i~l~~~D~-vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~  372 (559)
                      .+|+|| .+|...+.+.|-.        +..|-+ +++.|+--|.....+..+...+...|+++...-++       =++
T Consensus       654 tvLVTGaG~GsIGa~Var~L--------l~~GArvlVltSR~~~~~~~~aq~l~~el~a~Ga~l~Vv~~d-------vas  718 (1878)
T 2uv9_A          654 HALMTGAGAGSIGAEVLQGL--------LSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFN-------QGS  718 (1878)
T ss_dssp             EEEEESCCTTSHHHHHHHHH--------HHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECC-------TTC
T ss_pred             EEEEECCCCCHHHHHHHHHH--------HHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECC-------CCC
T ss_conf             89997998769999999999--------978996899688998565019999999998289879999699-------889


Q ss_pred             HHHHHHHHHHCC---------CCEEEEECC
Q ss_conf             789999997549---------539997045
Q gi|254780869|r  373 PNDLKRMYQWIR---------PQVLVAIHG  393 (559)
Q Consensus       373 ~edl~~li~~ik---------Pk~~IPvHG  393 (559)
                      ++|+..+++.|.         +.++||--|
T Consensus       719 ~~dv~aLv~~I~~~~~~lgg~Ld~Vvh~Ag  748 (1878)
T 2uv9_A          719 KQDVEALVNYIYDTKNGLGWDLDYVVPFAA  748 (1878)
T ss_dssp             HHHHHHHHHHHHCSSSSCCCCCSEEEECCC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCEEEECCC
T ss_conf             999999997416544766788787987885


No 120
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=43.00  E-value=12  Score=14.86  Aligned_cols=33  Identities=18%  Similarity=0.273  Sum_probs=23.6

Q ss_pred             CCCEEEEECHHH-------HHHHHHHHHHHHHHCCEEEEE
Q ss_conf             983999941477-------899999999998718869984
Q gi|254780869|r  225 KGCVLVTTFSSS-------VSRIRSIIDIAEQIGRKIVLL  257 (559)
Q Consensus       225 ~grViv~~fasn-------i~Ri~~i~~~a~~~~R~v~i~  257 (559)
                      +.++++-|..+|       .++++++++.|++.+--|+.+
T Consensus       172 ~~~~~i~~nP~NPtG~v~s~e~l~~l~~la~~~~~~iI~D  211 (412)
T 2x5d_A          172 KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHD  211 (412)
T ss_dssp             CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCEEEEECCCCCCCCEECCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             7379997899998670179999999999999769618862


No 121
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase, PHI, structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=41.16  E-value=13  Score=14.66  Aligned_cols=36  Identities=17%  Similarity=0.263  Sum_probs=27.8

Q ss_pred             CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             02689669999615886177899999765103113430
Q gi|254780869|r  321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA  358 (559)
Q Consensus       321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~  358 (559)
                      .++++|.+|+-|..  |+-+.+-.+.+...+.|++++.
T Consensus        79 ~~~~~Dv~i~iS~s--G~t~~~i~~~~~ak~~g~~vI~  114 (180)
T 1jeo_A           79 SYEKDDLLILISGS--GRTESVLTVAKKAKNINNNIIA  114 (180)
T ss_dssp             CCCTTCEEEEEESS--SCCHHHHHHHHHHHTTCSCEEE
T ss_pred             CCCCCCEEEEECCC--CCCHHHHHHHHHHHHCCCCEEE
T ss_conf             68999989997599--9808999999999975997999


No 122
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal- kingston bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori 26695} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=40.59  E-value=13  Score=14.61  Aligned_cols=140  Identities=13%  Similarity=0.148  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHH-HHHCC--EEEEECHHHHHHHHHHHHCCC----CCC-CCCCC
Q ss_conf             87999999999862798399994147789999999999-87188--699844869999998874287----677-65422
Q gi|254780869|r  210 EKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIA-EQIGR--KIVLLGSSLKRVVSVAIDVGI----IKK-DQLFL  281 (559)
Q Consensus       210 E~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a-~~~~R--~v~i~Grs~~~~~~~a~~~g~----l~~-~~~~i  281 (559)
                      -..+++.+.+.+ +.+. ++..+.+  -.=+..++.+. .+.|.  .|.+-.-+......+....|.    ++. +....
T Consensus        34 v~~fE~~la~~~-g~~~-~i~~~SG--t~Al~~al~al~~~~gd~~eVi~p~~t~~a~~~ai~~~G~~pvfvDvd~~~~~  109 (375)
T 2fnu_A           34 SLLFEEALCEFL-GVKH-ALVFNSA--TSALLTLYRNFSEFSADRNEIITTPISFVATANMLLESGYTPVFAGIKNDGNI  109 (375)
T ss_dssp             HHHHHHHHHHHH-TCSE-EEEESCH--HHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSB
T ss_pred             HHHHHHHHHHHH-CCCE-EEEECCH--HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf             999999999997-8095-9997378--99999999984777899887983697537508999868998864201133458


Q ss_pred             CHHHHCC-C-CCCCEEEEEECCCCCH--HHHHHHHCCCCCC---------------CC-CCCCCCEEEEEE---ECCCC-
Q ss_conf             6566223-8-8020899996696326--8898852027776---------------53-026896699996---15886-
Q gi|254780869|r  282 SDESFGL-Y-PREQLIVIATGSQGEP--RSALAQLSRGEMR---------------NV-KLAEKDTVIFSS---RAIPG-  337 (559)
Q Consensus       282 ~~~~~~~-~-p~~~~~ii~TGsqge~--~a~l~ria~~~~~---------------~i-~l~~~D~vI~ss---~~ipG-  337 (559)
                      .+.+... . ++-+.+ +.+-.-|.+  ...+..++....-               .- .-.-||.-+||.   +.++. 
T Consensus       110 ~~~~~~~~~~~~tkai-i~vh~~G~~~d~~~i~~~~~~~~i~lIEDaa~a~Ga~~~~~~~G~~gd~~~fSf~~~K~i~~g  188 (375)
T 2fnu_A          110 DELALEKLINERTKAI-VSVDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTA  188 (375)
T ss_dssp             CGGGSGGGCCTTEEEE-EEECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCS
T ss_pred             CHHHHHHHCCCCCEEE-EEECCCCCCCCHHHHHHHHHHCCCHHHCCHHHCCCCEECCCCCCCCCCEEECCCCCCCCCCCC
T ss_conf             9899998548887399-993563555577999999875042102016565797330512776643002146666455446


Q ss_pred             -------HHHHHHHHHHHHHCCCE
Q ss_conf             -------17789999976510311
Q gi|254780869|r  338 -------NEVAIGHIKNRLVEQGV  354 (559)
Q Consensus       338 -------nE~~~~~~~n~l~~~g~  354 (559)
                             |.+..+.-+..+...|.
T Consensus       189 eGG~i~t~~~~~~~~~~~~~~~g~  212 (375)
T 2fnu_A          189 EGGAVVTNDSELHEKMKLFRSHGM  212 (375)
T ss_dssp             SCEEEEESCHHHHHHHHHHTBTTE
T ss_pred             CCCEEEECCHHHHHHHHHHHHHCC
T ss_conf             551476089999998889998387


No 123
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics, NPPSFA; HET: PLP; 1.15A {Thermus thermophilus HB8}
Probab=38.38  E-value=8.3  Score=16.11  Aligned_cols=66  Identities=18%  Similarity=0.230  Sum_probs=34.7

Q ss_pred             HHHHHCCEEEEEE--EECCC-CC-----EEECCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             9740387499999--98389-98-----8005379994012125665889999999999999852200368989999999
Q gi|254780869|r  459 RQLSFVGHLSVNV--LLDNH-YN-----IFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESI  530 (559)
Q Consensus       459 ~~Ls~~GiV~V~v--iid~~-~~-----l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~i  530 (559)
                      +.|...|+.+---  ..|.+ ..     =++.|.+++||+  .+++...+.+.+.+.    +.+      .+.+.++++|
T Consensus       330 ~~Le~~gI~~Nkn~iP~D~~~~~~~sGiRiGT~a~TtrG~--~e~dm~~IA~~I~~~----l~~------~~~~~lr~eV  397 (407)
T 2dkj_A          330 ERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGF--TPEEMPLVAELIDRA----LLE------GPSEALREEV  397 (407)
T ss_dssp             HHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTC--CGGGHHHHHHHHHHH----HHH------CCCHHHHHHH
T ss_pred             HHHHHCCEEECCCCCCCCCCCCCCCCCCEECCHHHHHCCC--CHHHHHHHHHHHHHH----HHC------CCHHHHHHHH
T ss_conf             9999849187567588999999999852667789985899--889999999999999----864------9869999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780869|r  531 SSALRS  536 (559)
Q Consensus       531 r~~irk  536 (559)
                      ++.+++
T Consensus       398 ~~l~~~  403 (407)
T 2dkj_A          398 RRLALA  403 (407)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
T ss_conf             999982


No 124
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, cytoplasm, one-carbon metabolism, pyridoxal phosphate; 1.60A {Burkholderia pseudomallei}
Probab=37.14  E-value=4.7  Score=17.87  Aligned_cols=73  Identities=15%  Similarity=0.171  Sum_probs=37.3

Q ss_pred             HHHHHCCEEEEEEEE--CCCC-C-----EEECCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             974038749999998--3899-8-----8005379994012125665889999999999999852200368989999999
Q gi|254780869|r  459 RQLSFVGHLSVNVLL--DNHY-N-----IFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESI  530 (559)
Q Consensus       459 ~~Ls~~GiV~V~vii--d~~~-~-----l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~i  530 (559)
                      +.|...|+.+=--.+  |.+. .     =++.|.+++||+-  +.+...+.+.+.+    .+..+....+.| ....+.+
T Consensus       339 ~~Le~~gI~vNkn~iP~D~~~~~~~sGiRiGT~aiTtrG~~--e~dm~~iA~lI~~----~l~~~~~~~~~d-~~~~~~i  411 (425)
T 3ecd_A          339 QALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFG--AAEFREVGRLILE----VFEALRTNPEGD-HATEQRV  411 (425)
T ss_dssp             HHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCC--HHHHHHHHHHHHH----HHHHHHHCTTCC-HHHHHHH
T ss_pred             HHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCC--HHHHHHHHHHHHH----HHHHHHCCCCCC-HHHHHHH
T ss_conf             99997195865674889999899998616577899848998--8999999999999----999743377554-8999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780869|r  531 SSALRSLL  538 (559)
Q Consensus       531 r~~irk~~  538 (559)
                      |+.|..++
T Consensus       412 r~~V~~l~  419 (425)
T 3ecd_A          412 RREIFALC  419 (425)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99999999


No 125
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=36.92  E-value=15  Score=14.21  Aligned_cols=78  Identities=17%  Similarity=0.137  Sum_probs=46.4

Q ss_pred             CCCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-EEEEECHHHHHHHHHHHHHHHHHC
Q ss_conf             389889986----087882999963564578887777879999999998627983-999941477899999999998718
Q gi|254780869|r  177 VTDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC-VLVTTFSSSVSRIRSIIDIAEQIG  251 (559)
Q Consensus       177 ~~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr-Viv~~fasni~Ri~~i~~~a~~~~  251 (559)
                      ..|+..+.+    +-+.||+.++.-+|.+  ++.+.|..+-.+-++.+.+..++| .++++-+.+........+.|++.|
T Consensus        29 ~iD~~~~~~~i~~l~~~Gv~gl~i~GstG--E~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~st~~~i~~a~~a~~~G  106 (314)
T 3d0c_A           29 EIDWKGLDDNVEFLLQNGIEVIVPNGNTG--EFYALTIEEAKQVATRVTELVNGRATVVAGIGYSVDTAIELGKSAIDSG  106 (314)
T ss_dssp             CBCHHHHHHHHHHHHHTTCSEECTTSGGG--TGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECEECC--CHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf             83999999999999976999899685000--0534899999999998888709951499746888899999999999729


Q ss_pred             CEEEE
Q ss_conf             86998
Q gi|254780869|r  252 RKIVL  256 (559)
Q Consensus       252 R~v~i  256 (559)
                      =.-++
T Consensus       107 ad~i~  111 (314)
T 3d0c_A          107 ADCVM  111 (314)
T ss_dssp             CSEEE
T ss_pred             CCEEE
T ss_conf             88442


No 126
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*
Probab=36.87  E-value=15  Score=14.21  Aligned_cols=84  Identities=17%  Similarity=0.191  Sum_probs=51.2

Q ss_pred             EEEEEC-CCCCHHHHHHHHCCCCCCCCCCCCCCE-EEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCC
Q ss_conf             999966-963268898852027776530268966-999961588617789999976510311343035666413157889
Q gi|254780869|r  295 IVIATG-SQGEPRSALAQLSRGEMRNVKLAEKDT-VIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPY  372 (559)
Q Consensus       295 ~ii~TG-sqge~~a~l~ria~~~~~~i~l~~~D~-vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~  372 (559)
                      .+|+|| .+|...+.+.|-.        +..|-+ +++.|+..|-.......+...+...|+++...-++       =++
T Consensus       677 tvLVTGaG~GsIGa~Var~L--------l~~GArvlVltSR~~~~~~~~a~~l~~el~a~Ga~l~vvp~d-------~as  741 (1887)
T 2uv8_A          677 YVLITGAGKGSIGAEVLQGL--------LQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFN-------QGS  741 (1887)
T ss_dssp             EEEEESCCSSSHHHHHHHHH--------HHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECC-------TTC
T ss_pred             EEEEECCCCCHHHHHHHHHH--------HHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECC-------CCC
T ss_conf             79997998756999999999--------967983999347888576408999999997089879999699-------889


Q ss_pred             HHHHHHHHHHC-----------CCCEEEEECC
Q ss_conf             78999999754-----------9539997045
Q gi|254780869|r  373 PNDLKRMYQWI-----------RPQVLVAIHG  393 (559)
Q Consensus       373 ~edl~~li~~i-----------kPk~~IPvHG  393 (559)
                      ++|+..|++.+           .+.+++|.-|
T Consensus       742 ~~dv~aLv~~I~~~~~~~~~~~~ld~v~P~Aa  773 (1887)
T 2uv8_A          742 KQDVEALIEFIYDTEKNGGLGWDLDAIIPFAA  773 (1887)
T ss_dssp             HHHHHHHHHHHHSCTTTTSCCCCCSEEEECCC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
T ss_conf             99999999875321011234577565665764


No 127
>2g7z_A Conserved hypothetical protein SPY1493; long-fatty acid binding protein, lipid binding protein, PSI, MCSG; HET: MSE HXA; 2.05A {Streptococcus pyogenes serotype M1}
Probab=36.50  E-value=15  Score=14.17  Aligned_cols=53  Identities=11%  Similarity=0.046  Sum_probs=33.5

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHH-HHHHHHHHHCCEEEEEC
Q ss_conf             777787999999999862798399994147789999-99999987188699844
Q gi|254780869|r  206 TCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIR-SIIDIAEQIGRKIVLLG  258 (559)
Q Consensus       206 ~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~-~i~~~a~~~~R~v~i~G  258 (559)
                      ..||..++.+.++++.++.-..|++-+.||.+.-.. ++..+|+..+.+|.+..
T Consensus        66 S~ps~~~~~~~~~~~~~~gyd~ii~i~iSs~LSgty~~a~~a~~~~~~~i~ViD  119 (282)
T 2g7z_A           66 SQPPVGLFAETYENLVKKGVTDIVAIHLSPALSGTIEASRQGAEIAEAPVTVLD  119 (282)
T ss_dssp             ECCCHHHHHHHHHHHHHTTCCEEEEEECCTTTCTHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf             898999999999999866997699996575365899999999624599889991


No 128
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A*
Probab=36.19  E-value=16  Score=14.14  Aligned_cols=42  Identities=10%  Similarity=0.140  Sum_probs=31.4

Q ss_pred             HHHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf             999998627-983999941-477899999999998718869984
Q gi|254780869|r  216 NIYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLL  257 (559)
Q Consensus       216 ~i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~  257 (559)
                      .+.++++.+ ++.--|++| ..|++-++.++++|++.+.+|.+.
T Consensus         8 ~~~eiL~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq   51 (349)
T 3elf_A            8 VYAEMLGQAKQNSYAFPAINCTSSETVNAAIKGFADAGSDGIIQ   51 (349)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             99999999998792799977699999999999999978997998


No 129
>3kts_A Glycerol uptake operon antiterminator regulatory protein; structural genomics, PSI-2, protein structure initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=35.60  E-value=16  Score=14.07  Aligned_cols=40  Identities=18%  Similarity=0.355  Sum_probs=29.0

Q ss_pred             HHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf             999998627983999941477899999999998718869984
Q gi|254780869|r  216 NIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL  257 (559)
Q Consensus       216 ~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~  257 (559)
                      .+++.+ +++.++++-.+ .|+..+.++++.+++.|+++++.
T Consensus        21 ~le~al-~s~~~~iflL~-g~I~~l~~iv~~~k~~gK~vfVH   60 (192)
T 3kts_A           21 DMEKIL-ELDLTYMVMLE-THVAQLKALVKYAQAGGKKVLLH   60 (192)
T ss_dssp             HHHHHT-TSSCCEEEECS-EETTTHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHH-CCCCCEEEEEC-CCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             999997-58998999953-71877999999999879989998


No 130
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=35.58  E-value=9.6  Score=15.64  Aligned_cols=71  Identities=18%  Similarity=0.194  Sum_probs=37.1

Q ss_pred             HHHHHHCCEEEE--EEEECCC------CCEEECCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             997403874999--9998389------98800537999401212566588999999999999985220036898999999
Q gi|254780869|r  458 RRQLSFVGHLSV--NVLLDNH------YNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRES  529 (559)
Q Consensus       458 R~~Ls~~GiV~V--~viid~~------~~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~  529 (559)
                      .+.|...|+++=  .+..|.+      |==++.|.+++||+-  +.+...+.    +.+.+.+...   ...+..+++++
T Consensus       355 ~~~Le~agI~vNkn~iP~D~~~~~~~sGIRlGT~eiT~rG~~--e~dm~~IA----~lI~~al~~~---~~~~i~~ir~~  425 (447)
T 3h7f_A          355 EDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFG--DTEFTEVA----DIIATALATG---SSVDVSALKDR  425 (447)
T ss_dssp             HHHHHHTTEECBC-------------CEEEEECHHHHHHTCC--HHHHHHHH----HHHHHHHHSG---GGCCHHHHHHH
T ss_pred             HHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCC--HHHHHHHH----HHHHHHHHCC---CHHHHHHHHHH
T ss_conf             999997191878888989999998898407687899858998--89999999----9999998448---86779999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780869|r  530 ISSALRSL  537 (559)
Q Consensus       530 ir~~irk~  537 (559)
                      ++..+++|
T Consensus       426 V~~l~~~F  433 (447)
T 3h7f_A          426 ATRLARAF  433 (447)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHC
T ss_conf             99999858


No 131
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=35.17  E-value=16  Score=14.03  Aligned_cols=83  Identities=13%  Similarity=0.138  Sum_probs=41.9

Q ss_pred             CCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCC----------CCCCEEEECCC---HHHHHHHHHC
Q ss_conf             9886399994068683466069999517778648999776767888----------76750287079---5798766412
Q gi|254780869|r    1 MKNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKD----------DLPGVDLVFPD---ITFIMKERKN   67 (559)
Q Consensus         1 m~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~----------~~~gid~iiPd---~~~l~~~~~~   67 (559)
                      |+..+ +++-.||.|-||++.  +....+...+..++.=.-.-...          ...|++++.-|   .+.|.+-...
T Consensus         1 m~~k~-kILVtGatG~iG~~l--v~~Ll~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~gv~v~~~D~~d~~~l~~a~~~   77 (308)
T 1qyc_A            1 MGSRS-RILLIGATGYIGRHV--AKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKN   77 (308)
T ss_dssp             -CCCC-CEEEESTTSTTHHHH--HHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHT
T ss_pred             CCCCC-EEEEECCCCHHHHHH--HHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf             98999-799989883899999--999997889699998888655567777777765038958999646543556887520


Q ss_pred             CCEEEEECCCCCCCCCHHH
Q ss_conf             4689960543012160788
Q gi|254780869|r   68 LMAIFITHAHEDHYGALHD   86 (559)
Q Consensus        68 i~~i~iTH~H~DHiGalp~   86 (559)
                      +++++.+++..+.-+....
T Consensus        78 ~d~v~~~~~~~~~~~~~~l   96 (308)
T 1qyc_A           78 VDVVISTVGSLQIESQVNI   96 (308)
T ss_dssp             CSEEEECCCGGGSGGGHHH
T ss_pred             CEEEEECCCCCCCCCCCHH
T ss_conf             4157632565323342068


No 132
>3f0h_A Aminotransferase; RER070207000802, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=34.36  E-value=17  Score=13.94  Aligned_cols=20  Identities=10%  Similarity=-0.132  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHCCEEEEEC
Q ss_conf             99999999987188699844
Q gi|254780869|r  239 RIRSIIDIAEQIGRKIVLLG  258 (559)
Q Consensus       239 Ri~~i~~~a~~~~R~v~i~G  258 (559)
                      -+..|.++|++.|-.+++++
T Consensus       162 di~~I~~i~~~~~~~lvvD~  181 (376)
T 3f0h_A          162 DTMMIGEFCKKNNMFFVCDC  181 (376)
T ss_dssp             CHHHHHHHHHHTTCEEEEEC
T ss_pred             CHHHHHHHHHHCCCEEEEEC
T ss_conf             73676766640595589865


No 133
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=33.99  E-value=14  Score=14.43  Aligned_cols=266  Identities=15%  Similarity=0.117  Sum_probs=122.2

Q ss_pred             HHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEEC-HHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf             99998627-983999941-4778999999999987188699844-86999999887428767765422656622388020
Q gi|254780869|r  217 IYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLLG-SSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQ  293 (559)
Q Consensus       217 i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~G-rs~~~~~~~a~~~g~l~~~~~~i~~~~~~~~p~~~  293 (559)
                      +.++++.+ +++-.|++| ..|.+-++.++++|++.+.+|.+.. .+..++.      |+ +.....+. .-+.+.+.-.
T Consensus         5 ~k~ll~~A~~~~yaV~AfNv~~~e~~~avi~AAe~~~sPvIlq~s~~~~~~~------g~-~~~~~~~~-~~a~~~~~Vp   76 (307)
T 3n9r_A            5 GNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYM------GI-DMAVGMVK-IMCERYPHIP   76 (307)
T ss_dssp             HHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHHHHHTCCEEEEEEHHHHHHH------CH-HHHHHHHH-HHHHHSTTSC
T ss_pred             HHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCCEEEECCHHHHHHC------CH-HHHHHHHH-HHHHHCCCCE
T ss_conf             8999999998893799876799999999999999979998998487687567------98-99999999-9997569980


Q ss_pred             E-EEEEECCCCCHHHHHHHHCCCCCCCCCCCCC-CEEEEEEECCCCHHHHHHHHH---HHHHCCCEEEEE-----CCCCC
Q ss_conf             8-9999669632688988520277765302689-669999615886177899999---765103113430-----35666
Q gi|254780869|r  294 L-IVIATGSQGEPRSALAQLSRGEMRNVKLAEK-DTVIFSSRAIPGNEVAIGHIK---NRLVEQGVRVIA-----EDAEC  363 (559)
Q Consensus       294 ~-~ii~TGsqge~~a~l~ria~~~~~~i~l~~~-D~vI~ss~~ipGnE~~~~~~~---n~l~~~g~~vi~-----~~~~~  363 (559)
                      + +=+-.|   ..+....+.         ++.| +.|.|=.+.-| .|..+..+.   +.-.+.|+.|=-     .+.+.
T Consensus        77 v~lHLDH~---~~~e~i~~a---------i~~GftSVMiDgS~lp-~eeNi~~T~~vve~Ah~~gv~VEaElG~igg~e~  143 (307)
T 3n9r_A           77 VALHLDHG---TTFESCEKA---------VKAGFTSVMIDASHHA-FEENLELTSKVVKMAHNAGVSVEAELGRLMGIED  143 (307)
T ss_dssp             EEEEEEEE---CSHHHHHHH---------HHHTCSEEEECCTTSC-HHHHHHHHHHHHHHHHHTTCEEEEEESCCCCC--
T ss_pred             EEEECCCC---CCHHHHHHH---------HHCCCCEEEEECCCCC-HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
T ss_conf             89971787---999999999---------9719986886099899-9999999999999982539828987412157678


Q ss_pred             CE----ECCCCCCHHHHHHHHHHCCCCEEEE----ECCCHH-------HHHHHHHHHHHCCCCCEEEECCCEEEEECCCC
Q ss_conf             41----3157889789999997549539997----045779-------99999987874478631550032278973897
Q gi|254780869|r  364 PV----HVSGHPYPNDLKRMYQWIRPQVLVA----IHGEPL-------HLVAHKELALQEGIACVPPVRNGKMLRLFPDP  428 (559)
Q Consensus       364 ~i----H~SGHa~~edl~~li~~ikPk~~IP----vHGe~r-------hl~~h~~la~~~gv~~i~l~~NGd~i~l~~~~  428 (559)
                      ..    +-+--.+.+|-+.+++...+..+-+    +||.|.       .+..-++++...++|-++  .-|.-+   ++.
T Consensus       144 ~~~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiGn~HG~yk~~~~p~ld~~~l~~I~~~~~vPLVl--HG~S~v---~d~  218 (307)
T 3n9r_A          144 NISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVL--HGASAI---PDN  218 (307)
T ss_dssp             --------CCSCCHHHHHHHHHHHCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHHHHCSCEEE--SSCCCC---CHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEC--CCCCCC---CHH
T ss_conf             766555321247989999998710887342211223367778898776899999988505886554--788766---177


Q ss_pred             EEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEEECCCCCEEECCEEEEECCEECCCCHHHHHHHHHHHH
Q ss_conf             04501232132021233100255058899997403874999999838998800537999401212566588999999999
Q gi|254780869|r  429 IEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLLDNHYNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTV  508 (559)
Q Consensus       429 ~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~viid~~~~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i  508 (559)
                      .+ ....+.+-.+..|.++-      ..+-++...+|+.=+++--                         ++.....+.+
T Consensus       219 ~~-~~~~~~~~~~HG~sG~p------~e~i~~ai~~Gi~KiNi~T-------------------------~l~~a~~~~~  266 (307)
T 3n9r_A          219 VR-KSYLDAGGDLKGSKGVP------FEFLQESVKGGINKVNTDT-------------------------DLRIAFIAEV  266 (307)
T ss_dssp             HH-HHHHHTTCCCTTCBCCC------HHHHHHHHHTTEEEEEECH-------------------------HHHHHHHHHH
T ss_pred             HH-HHHHCCCCCCCCCCCCC------HHHHHHHHHCCCEEEEECH-------------------------HHHHHHHHHH
T ss_conf             77-76401233467888999------9999999977946999787-------------------------9999999999


Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999852200368989999999999999999982
Q gi|254780869|r  509 ITTVVDLPQFRRKDLKLLRESISSALRSLLKKVW  542 (559)
Q Consensus       509 ~~~i~~~~~~~~~d~~~lk~~ir~~irk~~~k~~  542 (559)
                      .+.+.+.  ....|...+-+..+.+++..+.+++
T Consensus       267 ~~~~~~~--~~~~d~~~~~~~~~~a~~~~v~~~i  298 (307)
T 3n9r_A          267 RKVANED--KSQFDLRKFFSPAQLALKNVVKERM  298 (307)
T ss_dssp             HHHHHHC--TTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999849--8768989999999999999999999


No 134
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Probab=33.98  E-value=8.8  Score=15.92  Aligned_cols=35  Identities=14%  Similarity=0.105  Sum_probs=24.6

Q ss_pred             HHHHHHHHHCCEEEEEEEECCCCCEEECCEE-EEECC
Q ss_conf             8999974038749999998389988005379-99401
Q gi|254780869|r  455 IAKRRQLSFVGHLSVNVLLDNHYNIFGVPEI-VDIGI  490 (559)
Q Consensus       455 l~eR~~Ls~~GiV~V~viid~~~~l~~~P~I-~~~Gl  490 (559)
                      -.+-++...+|.|.|.+.||.+|++.. .+| .+-|.
T Consensus       154 p~~A~r~~~~G~v~V~f~I~~~G~V~~-v~i~~SSG~  189 (229)
T 2grx_C          154 PARAQALRIEGQVKVKFDVTPDGRVDN-VQILSAKPA  189 (229)
T ss_dssp             CHHHHHHTCCEEECEEEECCTTSCCEE-EEECCCSSS
T ss_pred             CHHHHHCCCCCEEEEEEEECCCCCEEE-EEEEECCCC
T ss_conf             099997689877999999828998968-899866896


No 135
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=33.17  E-value=17  Score=13.81  Aligned_cols=36  Identities=25%  Similarity=0.259  Sum_probs=27.8

Q ss_pred             CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             02689669999615886177899999765103113430
Q gi|254780869|r  321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA  358 (559)
Q Consensus       321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~  358 (559)
                      ..+++|.+|.-|.-  |+-+.+-+.+..--+.|++++.
T Consensus       128 ~~~~gDvli~iS~S--G~s~nvi~al~~Ak~~G~~ti~  163 (212)
T 2i2w_A          128 VGREGDVLLGISTS--GNSANVIKAIAAAREKGMKVIT  163 (212)
T ss_dssp             HCCTTCEEEEECSS--SCCHHHHHHHHHHHHHTCEEEE
T ss_pred             HCCCCCEEEEEECC--CCCCCHHHHHHHHHHCCCEEEE
T ss_conf             57898879998089--9983289999999985998999


No 136
>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=32.85  E-value=17  Score=13.77  Aligned_cols=10  Identities=30%  Similarity=0.693  Sum_probs=4.0

Q ss_pred             HHHHHHCCCE
Q ss_conf             9976510311
Q gi|254780869|r  345 IKNRLVEQGV  354 (559)
Q Consensus       345 ~~n~l~~~g~  354 (559)
                      ..+.+.+.|.
T Consensus       203 f~~~~~~~~~  212 (338)
T 3dbi_A          203 YKDALAQHGI  212 (338)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHCCC
T ss_conf             9999998599


No 137
>3ke8_A 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; induced FIT mechanism, FS4-iron-sulfure-cluster, 3Fe-4S, iron, iron-sulfur; HET: EIP; 1.70A {Escherichia coli} PDB: 3ke9_A* 3kef_A* 3kel_A 3kem_A* 3f7t_A
Probab=32.65  E-value=18  Score=13.75  Aligned_cols=43  Identities=14%  Similarity=0.291  Sum_probs=24.9

Q ss_pred             HHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHH
Q ss_conf             99998627983999941477899999999998718869984486
Q gi|254780869|r  217 IYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSS  260 (559)
Q Consensus       217 i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs  260 (559)
                      ..+..++ +|.-++-+=-.-+.+++..++-..+-|.+++++|..
T Consensus        90 ~~~~~~~-~g~~viDaTCP~V~kvh~~v~~~~~~Gy~iiiiG~~  132 (326)
T 3ke8_A           90 VRNEAKS-RDLTVFDATCPLVTKVHMEVARASRRGEESILIGHA  132 (326)
T ss_dssp             HHHHHHH-TTCEEEECCCHHHHHHHHHHHHHHHTTCEEEEESCT
T ss_pred             HHHHHHH-CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9999997-799799687977359999999987189759999668


No 138
>3m92_A Protein YCIN; DUF2498, structural genomics, PSI-2, protein structure initi midwest center for structural genomics, MCSG, unknown funct; HET: MSE; 2.05A {Shigella flexneri 2A}
Probab=32.46  E-value=18  Score=13.73  Aligned_cols=77  Identities=18%  Similarity=0.212  Sum_probs=45.2

Q ss_pred             ECCCCCCCCCHHHHHHHCC---CCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCE
Q ss_conf             0543012160788898629---9779299999999999985488655622551755557763489999855677776535
Q gi|254780869|r   74 THAHEDHYGALHDLWSFLH---VPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMA  150 (559)
Q Consensus        74 TH~H~DHiGalp~l~~~~~---~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~  150 (559)
                      +|-|.-|..+-.-|+.++.   -.-..++.+.-.+...+-             +..+.               -+.|..+
T Consensus         4 ~~~~~~~~~~~~~l~~~~hM~~~t~pI~r~~LL~~AN~iI-------------~~HeD---------------yl~GM~a   55 (107)
T 3m92_A            4 SHHHHHHSSGRENLYFQGHMNKETQPIDRETLLKEANKII-------------REHED---------------TLAGIEA   55 (107)
T ss_dssp             ---------------------CCCEEECHHHHHHHHHHHH-------------HHHHH---------------HHTTCCE
T ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH-------------HHHHH---------------HHCCCEE
T ss_conf             5443323441366766410358876439999999999999-------------86687---------------7466341


Q ss_pred             EEEEECCCEEEECCCCEECCCCCCCCCC
Q ss_conf             6798768179983340246776654238
Q gi|254780869|r  151 LVIRSPVGNIVHTGDWKLDDDAILGDVT  178 (559)
Q Consensus       151 ~~I~t~~g~i~ytGDfk~d~~p~~g~~~  178 (559)
                      -.++-.++.+||.|+|=+|+.++....+
T Consensus        56 ~~Veqk~~VLVFkGeyFLD~~GLPT~Kt   83 (107)
T 3m92_A           56 TGVTQRNGVLVFTGDYFLDEQGLPTAKS   83 (107)
T ss_dssp             EEEEESSSCEEEEECCCCCTTSCCCHHH
T ss_pred             CEEEEECCEEEEECCEEECCCCCCCCCH
T ss_conf             4034468989992334636899987620


No 139
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, cytoplasm, one-carbon metabolism, pyridoxal phosphate; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=31.94  E-value=17  Score=13.90  Aligned_cols=69  Identities=10%  Similarity=0.113  Sum_probs=33.3

Q ss_pred             HHHHHCCEEEEEE--EECCCCC------EEECCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             9740387499999--9838998------8005379994012125665889999999999999852200368989999999
Q gi|254780869|r  459 RQLSFVGHLSVNV--LLDNHYN------IFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESI  530 (559)
Q Consensus       459 ~~Ls~~GiV~V~v--iid~~~~------l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~i  530 (559)
                      +.|...|+.+=--  ..|.+.-      =++.|.+++||+-  +.|...+.+    .+.+.+...     .| ....+++
T Consensus       338 ~~Le~~gI~vNkn~iP~D~~~~~~~sGiRiGT~a~TtrG~~--e~dm~~IA~----~I~~~l~~~-----~d-~~~~~~i  405 (420)
T 3gbx_A          338 AALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFK--EAEVKELAG----WMCDVLDNI-----ND-EATIERV  405 (420)
T ss_dssp             HHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCC--HHHHHHHHH----HHHHHHHTT-----TC-HHHHHHH
T ss_pred             HHHHHHCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCC--HHHHHHHHH----HHHHHHHCC-----CC-HHHHHHH
T ss_conf             99998295865773889998888998216577899858998--899999999----999999637-----98-8999999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q gi|254780869|r  531 SSALRSLLK  539 (559)
Q Consensus       531 r~~irk~~~  539 (559)
                      |+.|..++.
T Consensus       406 r~~V~~l~~  414 (420)
T 3gbx_A          406 KAKVLDICA  414 (420)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             999999998


No 140
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=31.76  E-value=18  Score=13.65  Aligned_cols=76  Identities=20%  Similarity=0.285  Sum_probs=44.1

Q ss_pred             HHHHHCCC-CEE-EEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCHHHHC-CCCCCCEE
Q ss_conf             99862798-399-9941477899999999998718869984486999999887428767765422656622-38802089
Q gi|254780869|r  219 DIMKNAKG-CVL-VTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFG-LYPREQLI  295 (559)
Q Consensus       219 ~~~~~~~g-rVi-v~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~~~~~~i~~~~~~-~~p~~~~~  295 (559)
                      +++++..| +|+ +.+ . .+++  .+++...+.+.+|.+.+|+..+.-..+.+.|. .    .++.+++. .+..-+++
T Consensus        14 ~~~~~~~~kkilvIGa-G-~~~~--~~a~~L~~~~~~v~v~nRt~~ka~~la~~~~~-~----~~~~~~l~~~l~~~DiV   84 (144)
T 3oj0_A           14 DIVRKNGGNKILLVGN-G-MLAS--EIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEY-E----YVLINDIDSLIKNNDVI   84 (144)
T ss_dssp             HHHHHHCCCEEEEECC-S-HHHH--HHGGGCCTTTCEEEEEESCHHHHHHHHHHHTC-E----EEECSCHHHHHHTCSEE
T ss_pred             HHHHHCCCCEEEEECC-H-HHHH--HHHHHHHHCCCEEEEEECCHHHHHHHHHHHCC-C----HHHHHHHHHHHHHCCEE
T ss_conf             9998639999999997-8-9999--99999985698468981999999999875052-2----02242089999767989


Q ss_pred             EEEECCCC
Q ss_conf             99966963
Q gi|254780869|r  296 VIATGSQG  303 (559)
Q Consensus       296 ii~TGsqg  303 (559)
                      +.||+++.
T Consensus        85 i~aT~s~~   92 (144)
T 3oj0_A           85 ITATSSKT   92 (144)
T ss_dssp             EECSCCSS
T ss_pred             EEECCCCC
T ss_conf             99238997


No 141
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=30.90  E-value=19  Score=13.55  Aligned_cols=67  Identities=16%  Similarity=0.193  Sum_probs=28.2

Q ss_pred             HHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHH----HHHHHHHHHHHHHHCCEEEEEC
Q ss_conf             986087882999963564578887777879999999998627983999941477----8999999999987188699844
Q gi|254780869|r  183 LCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSS----VSRIRSIIDIAEQIGRKIVLLG  258 (559)
Q Consensus       183 l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasn----i~Ri~~i~~~a~~~~R~v~i~G  258 (559)
                      +..+.+.|+.+-..+..   ..|. .+-    +.+++.+.. +-++++-+-.||    +.-+..|.++|++.|=.+++++
T Consensus       130 ~~~l~~~G~~v~~v~~~---~~g~-id~----~~l~~~i~~-~T~lV~~~~~sn~tG~i~pi~~I~~~~~~~g~~~~vD~  200 (423)
T 3lvm_A          130 CRQLEREGFEVTYLAPQ---RNGI-IDL----KELEAAMRD-DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDA  200 (423)
T ss_dssp             HHHHHHTTCEEEEECCC---TTSC-CCH----HHHHHHCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEEC
T ss_pred             HHHHHHCCCEEEEECCC---CCCC-CCH----HHHHHHCCC-CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             99999679789997789---9980-879----999975799-96799997898887505049999999855497799615


No 142
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=30.66  E-value=19  Score=13.52  Aligned_cols=214  Identities=13%  Similarity=0.129  Sum_probs=91.7

Q ss_pred             CCCEEEEEECCCCCCC-----CCCCCEE-EECC-CHHHHHHHHHCCCEEEEECCCCC-----CCCCHHHHHHHCCCCEEC
Q ss_conf             7864899977676788-----8767502-8707-95798766412468996054301-----216078889862997792
Q gi|254780869|r   30 SSRKWIMIDCGVSFPK-----DDLPGVD-LVFP-DITFIMKERKNLMAIFITHAHED-----HYGALHDLWSFLHVPVYA   97 (559)
Q Consensus        30 ~~~~~iiiD~G~~fp~-----~~~~gid-~iiP-d~~~l~~~~~~i~~i~iTH~H~D-----HiGalp~l~~~~~~pIY~   97 (559)
                      .++.++++|+|..|..     --.+|+. .|+| |.+.-+-...+++||+||-|...     .....+.++ .+++||.+
T Consensus        28 ~~~kIlIlDFGsQYtqLIaRRiRElgVyseI~p~~~~~e~i~~~~p~GIILSGGP~SV~~~~ap~~~~~if-~l~iPILG  106 (697)
T 2vxo_A           28 YEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIF-TIGKPVLG  106 (697)
T ss_dssp             -CCCEEEEEEC--CHHHHHHHHHHTTCCEEEEETTCCHHHHHHHTCSEEEEEECC-------CCCCCGGGT-TSSCCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHH-HCCCCEEE
T ss_conf             78989999889549999999998519728997799999999616999999889998677999998899998-28999899


Q ss_pred             CHHHHHHHHHHHHHCCCC------CCCCEEEECCCCEEEEC-CEEEEEEECCCC-----CCCCCEEEEEECCCEEEECCC
Q ss_conf             999999999999854886------55622551755557763-489999855677-----776535679876817998334
Q gi|254780869|r   98 SPFAIGLLEAKRVYERVS------KKIPCISFQAGDKVDVG-AFSIESVRVNHS-----IPETMALVIRSPVGNIVHTGD  165 (559)
Q Consensus        98 s~~t~~li~~~~~~~~~~------~~~~~~~i~~~~~~~~g-~~~v~~~~~~Hs-----ip~a~~~~I~t~~g~i~ytGD  165 (559)
                      ==+...+|-..+--.-..      ....+. +..+..+--| +-+.. .-++|+     +|+.+-..-+|+. .+  .+ 
T Consensus       107 ICyG~Qlia~~fGG~V~~~~~rEyG~~~i~-i~~~s~LF~gl~~~~~-VwmSHgD~V~~lP~gf~viA~s~~-~i--aa-  180 (697)
T 2vxo_A          107 ICYGMQMMNKVFGGTVHKKSVREDGVFNIS-VDNTCSLFRGLQKEEV-VLLTHGDSVDKVADGFKVVARSGN-IV--AG-  180 (697)
T ss_dssp             EEHHHHHHHHHTTCCBCC-------CEEEE-ECTTSGGGTTCCSEEE-ECCCSSCCBSSCCTTCEEEEEETT-EE--EE-
T ss_pred             ECHHHHHHHHHCCCEEEECCCCCCCCCEEE-ECCCCHHHCCCCCCCE-EEEECCCEEEECCCCEEEEEECCC-HH--HH-
T ss_conf             879999999981998976797433640589-8279741058998767-974412067736820057751374-58--88-


Q ss_pred             CEECCCCCCCCCCCHHHHHHCCCCCCEE---EEECCCCCCCCCCCCC--HHHHHHHHHHHHHHCCCCEEEEECHHHHHHH
Q ss_conf             0246776654238988998608788299---9963564578887777--8799999999986279839999414778999
Q gi|254780869|r  166 WKLDDDAILGDVTDKDSLCAIGNEGILA---LMCDSTNAMREGTCIS--EKGIKKNIYDIMKNAKGCVLVTTFSSSVSRI  240 (559)
Q Consensus       166 fk~d~~p~~g~~~d~~~l~~~~~~gv~~---Li~esT~~~~~~~~~s--E~~v~~~i~~~~~~~~grViv~~fasni~Ri  240 (559)
                      +.-...|+.|-.+..+-.  .+..|-.+   ++-+--.+ .+.+++.  +.+..+.+.+.+.  +++|+++.+ --++..
T Consensus       181 i~~~~~~iyGVQFHPEV~--hT~~G~~iL~NFl~~Ic~~-~~~w~~~~~~~~~i~~Ir~~Vg--~~kVl~~lS-GGVDSt  254 (697)
T 2vxo_A          181 IANESKKLYGAQFHPEVG--LTENGKVILKNFLYDIAGC-SGTFTVQNRELECIREIKERVG--TSKVLVLLS-GGVDST  254 (697)
T ss_dssp             EEETTTTEEEESSCTTSS--SSTTHHHHHHHHHTTTTCC-CSCCCHHHHHHHHHHHHHHHHT--TCEEEEECC-SSHHHH
T ss_pred             HHHCCCCEEEEEECCCCC--CCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEC-CCCCHH
T ss_conf             862146657897354123--6810789999999988533-1223278899999999998628--844899505-872069


Q ss_pred             HHHHHHHHHHC--CEEEE
Q ss_conf             99999998718--86998
Q gi|254780869|r  241 RSIIDIAEQIG--RKIVL  256 (559)
Q Consensus       241 ~~i~~~a~~~~--R~v~i  256 (559)
                      ...+-+.++.|  |-+++
T Consensus       255 V~A~Ll~kAlG~drl~~v  272 (697)
T 2vxo_A          255 VCTALLNRALNQEQVIAV  272 (697)
T ss_dssp             HHHHHHHHHSCGGGEEEE
T ss_pred             HHHHHHHHHHCCCCEEEE
T ss_conf             999999985164746999


No 143
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=30.51  E-value=19  Score=13.51  Aligned_cols=36  Identities=31%  Similarity=0.269  Sum_probs=25.0

Q ss_pred             CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             02689669999615886177899999765103113430
Q gi|254780869|r  321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA  358 (559)
Q Consensus       321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~  358 (559)
                      .+.++|++|+-|..  |+-+.+........+.|++++.
T Consensus        76 ~l~~~Dl~I~iS~s--G~t~~~~~~~~~ak~~g~~ii~  111 (186)
T 1m3s_A           76 PLAEGDLVIIGSGS--GETKSLIHTAAKAKSLHGIVAA  111 (186)
T ss_dssp             CCCTTCEEEEECSS--SCCHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCEEEEECCC--CCCHHHHHHHHHHHHCCCEEEE
T ss_conf             79999999998389--7514699999999987995999


No 144
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=30.20  E-value=19  Score=13.47  Aligned_cols=66  Identities=14%  Similarity=0.149  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf             7899999765103113430356664131578897899999975-4953999704577999999987874478
Q gi|254780869|r  340 VAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQW-IRPQVLVAIHGEPLHLVAHKELALQEGI  410 (559)
Q Consensus       340 ~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~-ikPk~~IPvHGe~rhl~~h~~la~~~gv  410 (559)
                      ....-..+.+.+.+.+.....   ....+-....+.+.++++. -+|..++- ...+ ......+.+.+.|+
T Consensus       196 ~R~~gf~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~-~A~g~~~~l~~~g~  262 (349)
T 1jye_A          196 LRLAGWHKYLTRNQIQPIAER---EGDWSAMSGFQQTMQMLNEGIVPTAMLV-ANDQ-MALGAMRAITESGL  262 (349)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEE---ECCSSHHHHHHHHHHHHHTTCCCSEEEE-SSHH-HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCCCCCEEE---ECCCCHHHHHHHHHHHHHCCCCCCEEEC-CCHH-HHHHHHHHHHHHCC
T ss_conf             989999999997599975156---3576465589999999725999835643-8849-99999999998189


No 145
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfuration; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=29.42  E-value=20  Score=13.38  Aligned_cols=103  Identities=13%  Similarity=0.144  Sum_probs=47.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEEC----HHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf             778799999999986279839999414778999999999987188699844----8699999988742876776542265
Q gi|254780869|r  208 ISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLG----SSLKRVVSVAIDVGIIKKDQLFLSD  283 (559)
Q Consensus       208 ~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~G----rs~~~~~~~a~~~g~l~~~~~~i~~  283 (559)
                      |+-..+++.+.. +++++. .  .+|+|=++-|..++. ..+.|..|+..+    -+..-.-+...+.|.--..-...+.
T Consensus       133 PT~~~LE~~lA~-LEgge~-a--~~fsSGMAAIsavl~-ll~~Gd~VV~~~~lYg~T~~ll~~~~~~~Gi~v~~vd~~d~  207 (464)
T 1ibj_A          133 PTRDALESLLAK-LDKADR-A--FCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKL  207 (464)
T ss_dssp             HHHHHHHHHHHH-HHTCSE-E--EEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSH
T ss_pred             HHHHHHHHHHHH-HHCCCC-E--EEEHHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf             789999999999-849993-9--983269999999999-86899989990897847999999999747865233387420


Q ss_pred             HHHCCCCCCCEEEEEECCCCCH------HHHHHHHCCC
Q ss_conf             6622388020899996696326------8898852027
Q gi|254780869|r  284 ESFGLYPREQLIVIATGSQGEP------RSALAQLSRG  315 (559)
Q Consensus       284 ~~~~~~p~~~~~ii~TGsqge~------~a~l~ria~~  315 (559)
                      ++....-+.+.-+|..-+.+-|      ..++.++|..
T Consensus       208 e~~~~ai~~~TklVf~EspsNP~l~v~DI~~ia~iA~~  245 (464)
T 1ibj_A          208 DEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHA  245 (464)
T ss_dssp             HHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHT
T ss_pred             HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf             34666516672499924899974414437999999876


No 146
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=29.15  E-value=20  Score=13.35  Aligned_cols=158  Identities=16%  Similarity=0.163  Sum_probs=75.0

Q ss_pred             HHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEEC-HHHHHHHHHHHHCCCCCCCCCCCC--HHHHCCCCC
Q ss_conf             99998627-983999941-4778999999999987188699844-869999998874287677654226--566223880
Q gi|254780869|r  217 IYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLLG-SSLKRVVSVAIDVGIIKKDQLFLS--DESFGLYPR  291 (559)
Q Consensus       217 i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~G-rs~~~~~~~a~~~g~l~~~~~~i~--~~~~~~~p~  291 (559)
                      +.++++.+ +++--|++| ..|.+-+..++++|++.+.+|.+.- .+-.++      .|.... ...+.  ..+....| 
T Consensus         6 ~k~ll~~A~~~~yAV~AfNv~~~e~~~avi~AAee~~sPvIlq~s~~~~~~------~g~~~~-~~~~~~~~~~~~~VP-   77 (323)
T 2isw_A            6 LRQMLGEARKHKYGVGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALKY------SDMIYL-KKLCEAALEKHPDIP-   77 (323)
T ss_dssp             HHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHH------TTTHHH-HHHHHHHHHHCTTSC-
T ss_pred             HHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCCEEEECCCCHHHH------CCHHHH-HHHHHHHHHHCCCCC-
T ss_conf             999999999889579997538999999999999994999999978557866------897889-999999999759999-


Q ss_pred             CCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCC-CEEEEEEECCCCHHHHHHHH---HHHHHCCCEEEEE-----CCCC
Q ss_conf             2089999669632688988520277765302689-66999961588617789999---9765103113430-----3566
Q gi|254780869|r  292 EQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEK-DTVIFSSRAIPGNEVAIGHI---KNRLVEQGVRVIA-----EDAE  362 (559)
Q Consensus       292 ~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~-D~vI~ss~~ipGnE~~~~~~---~n~l~~~g~~vi~-----~~~~  362 (559)
                       =++-+-.   |..+....+.         ++.| +.|.|-.+.-| .|..+..+   .+.-...|+.|=-     .+.+
T Consensus        78 -v~lHlDH---~~~~e~i~~a---------i~~GftSVMiDgS~lp-~eeNI~~Tk~vv~~Ah~~gv~VEaElG~vgg~e  143 (323)
T 2isw_A           78 -ICIHLDH---GDTLESVKMA---------IDLGFSSVMIDASHHP-FDENVRITKEVVAYAHARSVSVEAELGTLGGIE  143 (323)
T ss_dssp             -EEEEEEE---ECSHHHHHHH---------HHTTCSEEEECCTTSC-HHHHHHHHHHHHHHHHTTTCEEEEEESCC----
T ss_pred             -EEEECCC---CCCHHHHHHH---------HHHCCCEEEECCCCCC-HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf             -8997999---8899999999---------9718986998388233-999999999999998653871899642036767


Q ss_pred             CC-EECCCCCCHHHHHHHHHHCCCCEEEE----ECCCHH
Q ss_conf             64-13157889789999997549539997----045779
Q gi|254780869|r  363 CP-VHVSGHPYPNDLKRMYQWIRPQVLVA----IHGEPL  396 (559)
Q Consensus       363 ~~-iH~SGHa~~edl~~li~~ikPk~~IP----vHGe~r  396 (559)
                      .. -..+.-.+.+|-+++++...+..+=+    +||-|.
T Consensus       144 d~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGn~HG~yk  182 (323)
T 2isw_A          144 EDVQNTVQLTEPQDAKKFVELTGVDALAVAIGTSHGAYK  182 (323)
T ss_dssp             ------CCCCCHHHHHHHHHHHCCSEEEECSSCCSSSBC
T ss_pred             CCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCC
T ss_conf             676554557998999999861188844201000036677


No 147
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=28.90  E-value=20  Score=13.32  Aligned_cols=50  Identities=22%  Similarity=0.098  Sum_probs=43.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf             77879999999998627983999941477899999999998718869984
Q gi|254780869|r  208 ISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL  257 (559)
Q Consensus       208 ~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~  257 (559)
                      .+-..+.+.+++++++++..+++++-...+.++..-+..|.+-|-.|.+.
T Consensus         6 k~~~~~l~~~~e~I~~A~~ei~ls~~~~~l~~l~~~L~~a~~rgV~v~l~   55 (233)
T 2f5t_X            6 RSFDEAIEMFRESLYSAKNEVIVVTPSEFFETIREDLIKTLERGVTVSLY   55 (233)
T ss_dssp             SCHHHHHHHHHHHHHTCSSEEEEEECGGGHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             54899999999999865629999939999999999999898589699999


No 148
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransferase); PLP-binding enzyme, lysine biosynthesis, structural genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis H37RV}
Probab=28.86  E-value=20  Score=13.31  Aligned_cols=21  Identities=14%  Similarity=0.194  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHCCEEEEE
Q ss_conf             899999999998718869984
Q gi|254780869|r  237 VSRIRSIIDIAEQIGRKIVLL  257 (559)
Q Consensus       237 i~Ri~~i~~~a~~~~R~v~i~  257 (559)
                      .++++.++++|++.+--|+..
T Consensus       179 ~~~~~~l~~~~~~~~~~ii~D  199 (411)
T 2o0r_A          179 ATELAAIAEIAVAANLVVITD  199 (411)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHCCCCCCCCCCEEEEECH
T ss_conf             676402111244532589431


No 149
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=28.36  E-value=20  Score=13.35  Aligned_cols=264  Identities=14%  Similarity=0.130  Sum_probs=117.3

Q ss_pred             HHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEE-ECHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf             99998627-983999941-47789999999999871886998-4486999999887428767765422656622388020
Q gi|254780869|r  217 IYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVL-LGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQ  293 (559)
Q Consensus       217 i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i-~Grs~~~~~~~a~~~g~l~~~~~~i~~~~~~~~p~~~  293 (559)
                      +.++++.+ ++.--|++| ..|.+-+..++++|++.+.+|.+ .+.+..++...  ..     .......-+....|-  
T Consensus         5 ~k~iL~~A~~~~yaV~Afnv~~~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~--~~-----~~~~~~~a~~~~Vpv--   75 (305)
T 1rvg_A            5 GLEILKKAREEGYGVGAFNVNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGR--AL-----TLMAVELAKEARVPV--   75 (305)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHH--HH-----HHHHHHHHHHCSSCE--
T ss_pred             HHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCCEEEECCCCHHHHCCH--HH-----HHHHHHHHHHCCCCE--
T ss_conf             899999999889279987679899999999999996999999987457766438--99-----999999876659998--


Q ss_pred             EEEEEECCCCCHHHHHHHHCCCCCCCCCCCCC-CEEEEEEECCCCHHHHHHHHH---HHHHCCCEEEEE-----CCCCCC
Q ss_conf             89999669632688988520277765302689-669999615886177899999---765103113430-----356664
Q gi|254780869|r  294 LIVIATGSQGEPRSALAQLSRGEMRNVKLAEK-DTVIFSSRAIPGNEVAIGHIK---NRLVEQGVRVIA-----EDAECP  364 (559)
Q Consensus       294 ~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~-D~vI~ss~~ipGnE~~~~~~~---n~l~~~g~~vi~-----~~~~~~  364 (559)
                      ++=+-.|.   ......+         .++.| +.|.|-.+.-| .|..+..+.   +.-...|+.|=-     .+.+..
T Consensus        76 alHlDH~~---~~e~i~~---------ai~~GftSVMiDgS~l~-~eeNi~~T~~vv~~Ah~~gv~VEaElG~igg~Ed~  142 (305)
T 1rvg_A           76 AVHLDHGS---SYESVLR---------ALRAGFTSVMIDKSHED-FETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEH  142 (305)
T ss_dssp             EEEEEEEC---SHHHHHH---------HHHTTCSEEEECCTTSC-HHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC-
T ss_pred             EEECCCCC---CHHHHHH---------HHHCCCCEEEECCCCCC-HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf             99745557---9888999---------98749987986499888-89999999999998615188766502212565555


Q ss_pred             E----ECCCCCCHHHHHHHHHHCCCCEEEE----ECCCHH-------HHHHHHHHHHHCCCCCEEEECCCEEEEECCCCE
Q ss_conf             1----3157889789999997549539997----045779-------999999878744786315500322789738970
Q gi|254780869|r  365 V----HVSGHPYPNDLKRMYQWIRPQVLVA----IHGEPL-------HLVAHKELALQEGIACVPPVRNGKMLRLFPDPI  429 (559)
Q Consensus       365 i----H~SGHa~~edl~~li~~ikPk~~IP----vHGe~r-------hl~~h~~la~~~gv~~i~l~~NGd~i~l~~~~~  429 (559)
                      .    +-+.-.+.+|-+++++...+..+=+    +||.|.       .+..-+++.....+|-++  .-|..+     ..
T Consensus       143 ~~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiGn~HG~yk~~~~~~l~~~~l~~i~~~~~~PLvl--HG~S~~-----~~  215 (305)
T 1rvg_A          143 VAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVL--HGASAV-----PP  215 (305)
T ss_dssp             -----CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCCSCEEE--CSCCCC-----CH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEE--ECCCCC-----CH
T ss_conf             56664324568999999999975887685430224576688888662488999996167998786--689777-----37


Q ss_pred             EEEEE-EECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEEECCCCCEEECCEEEEECCEECCCCHHHHHHHHHHHH
Q ss_conf             45012-32132021233100255058899997403874999999838998800537999401212566588999999999
Q gi|254780869|r  430 EIIDE-VVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLLDNHYNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTV  508 (559)
Q Consensus       430 ~i~~~-v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~viid~~~~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i  508 (559)
                      ..... .++|-.+--+.|+.      -.+-++.-..|+.=|++-                         .++.....+.+
T Consensus       216 ~~~~~~~~~~~~lHG~sG~~------~e~i~~ai~~GI~KiNi~-------------------------T~l~~a~~~~l  264 (305)
T 1rvg_A          216 ELVERFRASGGEIGEAAGIH------PEDIKKAISLGIAKINTD-------------------------TDLRLAFTALI  264 (305)
T ss_dssp             HHHHHHHHTTCCCCSCBCCC------HHHHHHHHHTTEEEEEEC-------------------------HHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCC------HHHHHHHHHCCCEEEEEC-------------------------HHHHHHHHHHH
T ss_conf             77777630476557778999------999999998695599978-------------------------18999999999


Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999852200368989999999999999999982
Q gi|254780869|r  509 ITTVVDLPQFRRKDLKLLRESISSALRSLLKKVW  542 (559)
Q Consensus       509 ~~~i~~~~~~~~~d~~~lk~~ir~~irk~~~k~~  542 (559)
                      .+.+.+.  ....|...+-+..+.++++.+++++
T Consensus       265 ~~~~~~n--~~~~d~~~~~~~~~~a~~~~v~~~i  296 (305)
T 1rvg_A          265 REALNKN--PKEFDPRKYLGPAREAVKEVVKSRM  296 (305)
T ss_dssp             HHHHHHC--TTCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999858--7767889999999999999999999


No 150
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=27.68  E-value=21  Score=13.17  Aligned_cols=26  Identities=15%  Similarity=0.147  Sum_probs=13.3

Q ss_pred             ECHHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf             41477899999999998718869984
Q gi|254780869|r  232 TFSSSVSRIRSIIDIAEQIGRKIVLL  257 (559)
Q Consensus       232 ~fasni~Ri~~i~~~a~~~~R~v~i~  257 (559)
                      +|+|=++=|..++.+..+.|..|+..
T Consensus        72 ~fsSGMAAi~~~l~~l~~~gd~vv~~   97 (386)
T 1cs1_A           72 LTNTGMSAIHLVTTVFLKPGDLLVAP   97 (386)
T ss_dssp             EESSHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             EECCHHHHHHHHHHHHCCCCCEEEEC
T ss_conf             83577999999998732799889961


No 151
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, thioredoxin fold, structural genomics, PSI- 2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=27.56  E-value=21  Score=13.16  Aligned_cols=37  Identities=14%  Similarity=0.128  Sum_probs=25.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCC----CCEEEECCCEEEE
Q ss_conf             953999704577999999987874478----6315500322789
Q gi|254780869|r  384 RPQVLVAIHGEPLHLVAHKELALQEGI----ACVPPVRNGKMLR  423 (559)
Q Consensus       384 kPk~~IPvHGe~rhl~~h~~la~~~gv----~~i~l~~NGd~i~  423 (559)
                      -|-|++=|. ++|-+-.+  +|...||    |+++++.||.++=
T Consensus        55 ~~~y~ldv~-~~R~vSn~--IAe~~~V~HESPQ~ili~~G~~v~   95 (112)
T 3iv4_A           55 MDGYYLIVQ-QERDLSDY--IAKKTNVKHESPQAFYFVNGEMVW   95 (112)
T ss_dssp             CCEEEEEGG-GGHHHHHH--HHHHHTCCCCSSEEEEEETTEEEE
T ss_pred             CCEEEEEEE-ECCHHHHH--HHHHHCCCCCCCCEEEEECCEEEE
T ss_conf             876999964-17657899--999959966898189998998999


No 152
>3hl3_A Glucose-1-phosphate thymidylyltransferase; IDP01254, sucrose, structural genomics, center for structural genomics of infectious diseases; HET: SUC; 2.76A {Bacillus anthracis}
Probab=27.49  E-value=2.6  Score=19.73  Aligned_cols=17  Identities=18%  Similarity=0.085  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHCCCEE
Q ss_conf             77899999765103113
Q gi|254780869|r  339 EVAIGHIKNRLVEQGVR  355 (559)
Q Consensus       339 E~~~~~~~n~l~~~g~~  355 (559)
                      ...+.++++.|...|++
T Consensus        55 kplI~~~l~~l~~~gi~   71 (269)
T 3hl3_A           55 YPMIYHAVYKLKQCDIT   71 (269)
T ss_dssp             EEHHHHHHHHHHTTTCC
T ss_pred             EEHHHHHHHHHHHCCCC
T ss_conf             98899999999864995


No 153
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A*
Probab=27.22  E-value=22  Score=13.12  Aligned_cols=88  Identities=20%  Similarity=0.290  Sum_probs=48.9

Q ss_pred             CCCCEEEEEECCCC-CC--C----CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEE-
Q ss_conf             98863999940686-83--4----6606999951777864899977676788876750287079579876641246899-
Q gi|254780869|r    1 MKNEELVFLPLGGV-GE--I----GMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIF-   72 (559)
Q Consensus         1 m~~~~i~~~~lGG~-~e--i----G~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~-   72 (559)
                      |++ ++-++ .||. .|  |    |+++  +....+..-+++++|..     +..         ...|+  ..+++.+| 
T Consensus         1 m~~-ki~vl-~GG~S~E~~iSl~Sg~~i--~~aL~~~g~~v~~id~~-----~~~---------~~~l~--~~~~d~vf~   60 (306)
T 1iow_A            1 MTD-KIAVL-LGGTSAEREVSLNSGAAV--LAGLREGGIDAYPVDPK-----EVD---------VTQLK--SMGFQKVFI   60 (306)
T ss_dssp             CCC-EEEEE-CCCSSTTHHHHHHHHHHH--HHHHHHTTCEEEEECTT-----TSC---------GGGTT--TTTEEEEEE
T ss_pred             CCC-CEEEE-ECCCCCCHHHHHHHHHHH--HHHHHHCCCEEEEECCC-----CCC---------HHHHH--HCCCCEEEE
T ss_conf             985-09999-385873128699999999--99998869989998998-----554---------88886--448988999


Q ss_pred             EECCCCCCCCCHHHHHHHCCCCEECC-HHHHHHHHHH
Q ss_conf             60543012160788898629977929-9999999999
Q gi|254780869|r   73 ITHAHEDHYGALHDLWSFLHVPVYAS-PFAIGLLEAK  108 (559)
Q Consensus        73 iTH~H~DHiGalp~l~~~~~~pIY~s-~~t~~li~~~  108 (559)
                      +.|+-..--|.++-++...++|.-++ +.+..+...|
T Consensus        61 ~~hG~~~ed~~~~~~le~~~ipy~Gs~~~~~~l~~dK   97 (306)
T 1iow_A           61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDK   97 (306)
T ss_dssp             CCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHCH
T ss_pred             ECCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHCH
T ss_conf             3468854137999999987963825888999988591


No 154
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=26.71  E-value=22  Score=13.05  Aligned_cols=37  Identities=24%  Similarity=0.214  Sum_probs=20.6

Q ss_pred             HHHHHHCCCEEEEECCCCCC---CCCHHHHHHHCCCCEEC
Q ss_conf             87664124689960543012---16078889862997792
Q gi|254780869|r   61 IMKERKNLMAIFITHAHEDH---YGALHDLWSFLHVPVYA   97 (559)
Q Consensus        61 l~~~~~~i~~i~iTH~H~DH---iGalp~l~~~~~~pIY~   97 (559)
                      ++++.++.+|++||||-.-=   --+|.+++...+.||--
T Consensus        67 i~~~~~~~dGvVVtHGTDTl~~TA~~Ls~~~~~~~kPVVl  106 (328)
T 1wls_A           67 IEKEVWEYDGIVITHGTDTMAYSASMLSFMLRNPPIPIVL  106 (328)
T ss_dssp             HHHHTTTCSEEEEECCGGGHHHHHHHHHHHEESCSSEEEE
T ss_pred             HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             9987615898899668632999999999997479998899


No 155
>2dou_A Probable N-succinyldiaminopimelate aminotransferase; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus HB8}
Probab=25.86  E-value=23  Score=12.95  Aligned_cols=21  Identities=10%  Similarity=0.090  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHCCEEEEE
Q ss_conf             899999999998718869984
Q gi|254780869|r  237 VSRIRSIIDIAEQIGRKIVLL  257 (559)
Q Consensus       237 i~Ri~~i~~~a~~~~R~v~i~  257 (559)
                      .++++.+++.|++.+-.|+..
T Consensus       177 ~~~l~~i~~~~~~~~~~ii~D  197 (376)
T 2dou_A          177 WGYFEEALGLARKHGLWLIHD  197 (376)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHCCEEEEEE
T ss_conf             788899998876277799940


No 156
>3gjz_A Microcin immunity protein MCCF; niaid structural genomic centers for infectious diseases, csgid, immune system, structural genomics; 2.10A {Bacillus anthracis str}
Probab=25.25  E-value=23  Score=12.87  Aligned_cols=46  Identities=11%  Similarity=0.113  Sum_probs=22.4

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf             6889885202777653026896699996158861778999997651031
Q gi|254780869|r  305 PRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQG  353 (559)
Q Consensus       305 ~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g  353 (559)
                      -.+.|..++--.+ ....+. ..+.|--.. -..-..+.|++..|...|
T Consensus       213 nL~~l~~l~GTpy-~p~~~d-g~ILfLEdv-~e~~~~idR~L~qL~~aG  258 (336)
T 3gjz_A          213 NLNTIQGIWGSPY-MPCIQE-GDILFIEDS-SKDAATIERSFSFLKING  258 (336)
T ss_dssp             EHHHHTTTTTSTT-SCCCCT-TCEEEEECC-SCBHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHCCCC-CCCCCC-CCEEEEEEC-CCCCCHHHHHHHHHHHCC
T ss_conf             1999987638887-876678-828999827-876539999999999759


No 157
>2f46_A Hypothetical protein; 7380613, DUF442, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.41A {Neisseria meningitidis Z2491}
Probab=25.12  E-value=23  Score=12.86  Aligned_cols=57  Identities=14%  Similarity=0.204  Sum_probs=39.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCC
Q ss_conf             778799999999986279839999414778999999999987188699844869999998874287
Q gi|254780869|r  208 ISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGI  273 (559)
Q Consensus       208 ~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~  273 (559)
                      +++.. ...+.+++...++.|+|-|.+-  .|.-.++-+....      .|.+....+..++..||
T Consensus        86 ~~~~~-i~~~~~~l~~~~~pVlvHC~sG--~Rs~~l~a~~~~~------~g~~~e~al~~~~~~G~  142 (156)
T 2f46_A           86 IQKHD-VETFRQLIGQAEYPVLAYCRTG--TRCSLLWGFRRAA------EGMPVDEIIRRAQAAGV  142 (156)
T ss_dssp             CCHHH-HHHHHHHHHTSCSSEEEECSSS--HHHHHHHHHHHHH------TTCCHHHHHHHHHHTTC
T ss_pred             CCHHH-HHHHHHHHHCCCCCEEEECCCC--CCHHHHHHHHHHH------CCCCHHHHHHHHHHHCC
T ss_conf             64899-9999999843689789881899--7199999999998------39999999999998299


No 158
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89}
Probab=24.90  E-value=24  Score=12.83  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHCCEEEEE
Q ss_conf             899999999998718869984
Q gi|254780869|r  237 VSRIRSIIDIAEQIGRKIVLL  257 (559)
Q Consensus       237 i~Ri~~i~~~a~~~~R~v~i~  257 (559)
                      .+++..++++|++.+-.|+.+
T Consensus       173 ~~~~~~l~~~~~~~~~~vi~D  193 (375)
T 3op7_A          173 RTYLEELVEIASEVGAYILSD  193 (375)
T ss_dssp             HHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCCCCHHHHHHCCCCEEEEEC
T ss_conf             443210122110477688723


No 159
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial precursor; middle-chain acyl-COA synthetase, xenobiotic/medium-chain fatty acid-COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=24.73  E-value=24  Score=12.81  Aligned_cols=88  Identities=14%  Similarity=0.115  Sum_probs=41.8

Q ss_pred             ECCCEEEEECCC-CEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEEE--CC-CCC-EEECCEEEE-EC
Q ss_conf             003227897389-7045012321320212331002550588999974038749999998--38-998-800537999-40
Q gi|254780869|r  416 VRNGKMLRLFPD-PIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLL--DN-HYN-IFGVPEIVD-IG  489 (559)
Q Consensus       416 ~~NGd~i~l~~~-~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vii--d~-~~~-l~~~P~I~~-~G  489 (559)
                      ..-||...++++ ...+.+..+- -+-+.|..+.+. +   =|+..++..++.-+.++-  |. .+. +..-  +.. .|
T Consensus       435 ~~TGDlg~~d~dG~l~i~GR~~d-~I~~~G~~v~p~-e---IE~~l~~~p~V~ea~Vvg~~d~~~ge~~~a~--Vvl~~~  507 (570)
T 3c5e_A          435 WLLGDRGIKDEDGYFQFMGRADD-IINSSGYRIGPS-E---VENALMEHPAVVETAVISSPDPVRGEVVKAF--VVLASQ  507 (570)
T ss_dssp             EEEEEEEEECTTSCEEEEEEGGG-CEEETTEEECHH-H---HHHHHHTSTTEEEEEEEEEEETTTEEEEEEE--EEECGG
T ss_pred             CCCCCEEEECCCCCEEECCCCCC-EEEECCEEECHH-H---HHHHHHHCCCCCEEEEEEEECCCCCEEEEEE--EEECCC
T ss_conf             33475599979999797712378-899899999999-9---9999982998137999988878898189999--998888


Q ss_pred             CEECCCCHHHHHHHHHHHHHHHH
Q ss_conf             12125665889999999999999
Q gi|254780869|r  490 IPAYDGDGGKIHKLLLKTVITTV  512 (559)
Q Consensus       490 l~~~~~~~~~l~~~i~~~i~~~i  512 (559)
                      .  ...+.+.+.+++.+.+...+
T Consensus       508 ~--~~~~~~~~~~~l~~~~~~~L  528 (570)
T 3c5e_A          508 F--LSHDPEQLTKELQQHVKSVT  528 (570)
T ss_dssp             G--TTSCHHHHHHHHHHHHHHHS
T ss_pred             C--CCCCHHHHHHHHHHHHHHHC
T ss_conf             7--88887999999999998568


No 160
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=24.70  E-value=24  Score=12.80  Aligned_cols=51  Identities=16%  Similarity=0.177  Sum_probs=29.6

Q ss_pred             HHHHHCCEEEEE--EEECCC-----CCEEECCEEEEECCEECCCCHHHHHHHHHHHHHHH
Q ss_conf             974038749999--998389-----98800537999401212566588999999999999
Q gi|254780869|r  459 RQLSFVGHLSVN--VLLDNH-----YNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITT  511 (559)
Q Consensus       459 ~~Ls~~GiV~V~--viid~~-----~~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~  511 (559)
                      +.|...|+.+=-  +..|+.     |==++.|.+++||+  .+.+...+.+.+.+++...
T Consensus       374 ~~Le~~gI~vNkn~iP~d~~~~~~sGiRiGT~alT~rG~--~e~dm~~iA~lI~~al~~~  431 (483)
T 1rv3_A          374 KVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGL--LEKDFQKVAHFIHRGIELT  431 (483)
T ss_dssp             HHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTC--CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEECCCCCCCCCCCCCCCEEEECCHHHHHCCC--CHHHHHHHHHHHHHHHHHH
T ss_conf             999986948787868899999999805756789984899--8899999999999999987


No 161
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=24.67  E-value=22  Score=13.08  Aligned_cols=34  Identities=12%  Similarity=0.185  Sum_probs=15.8

Q ss_pred             CCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEE
Q ss_conf             98863999940686834660699995177786489997
Q gi|254780869|r    1 MKNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMID   38 (559)
Q Consensus         1 m~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD   38 (559)
                      |++.+|-+  .||.|-||.+.  ++...+...+.+++|
T Consensus         1 m~~KkIlI--TG~tGfiG~~l--~~~L~~~g~~v~~~~   34 (321)
T 1e6u_A            1 MAKQRVFI--AGHRGMVGSAI--RRQLEQRGDVELVLR   34 (321)
T ss_dssp             -CCEEEEE--ETTTSHHHHHH--HHHHTTCTTEEEECC
T ss_pred             CCCCEEEE--ECCCCHHHHHH--HHHHHHCCCEEEEEC
T ss_conf             99886999--84874899999--999997849899965


No 162
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=24.64  E-value=24  Score=12.79  Aligned_cols=30  Identities=7%  Similarity=0.055  Sum_probs=22.2

Q ss_pred             HHHHHCCEEEEEEEECCCCCEEECCEE-EEEC
Q ss_conf             974038749999998389988005379-9940
Q gi|254780869|r  459 RQLSFVGHLSVNVLLDNHYNIFGVPEI-VDIG  489 (559)
Q Consensus       459 ~~Ls~~GiV~V~viid~~~~l~~~P~I-~~~G  489 (559)
                      ++...+|.|.+.+.||.+|++.. ++| .+.|
T Consensus        34 ~~~gieG~V~v~f~I~~~G~v~~-~~v~~ss~   64 (106)
T 2k9k_A           34 LKRGVEGFVTLSFTIDTTGKAVD-INVVDANP   64 (106)
T ss_dssp             HHHCCCCEEEEEEEEETTTEEEE-EEEEEESS
T ss_pred             HHCCCEEEEEEEEEEECCCCEEE-EEEEECCC
T ss_conf             97599049999999928998988-89986479


No 163
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni}
Probab=24.58  E-value=24  Score=12.79  Aligned_cols=47  Identities=19%  Similarity=0.386  Sum_probs=25.4

Q ss_pred             EECCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             00537999401212566588999999999999985220036898999999999999999
Q gi|254780869|r  480 FGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISSALRSLL  538 (559)
Q Consensus       480 ~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~ir~~irk~~  538 (559)
                      ++.|.+++||+-  +.|...+.+.    +.+.+...      ++....+++|+.|..++
T Consensus       360 lGT~~lT~rG~~--e~dm~~iA~l----I~~al~~~------~~~~~~~~ir~~V~~l~  406 (417)
T 3n0l_A          360 LGTPALTARGFK--EKEMEIVSNY----IADILDDV------NNEKLQENIKQELKKLA  406 (417)
T ss_dssp             EECHHHHHTTCC--HHHHHHHHHH----HHHHHHTT------TCHHHHHHHHHHHHHHH
T ss_pred             ECCHHHHHCCCC--HHHHHHHHHH----HHHHHHCC------CCHHHHHHHHHHHHHHH
T ss_conf             577899857998--8999999999----99999646------85789999999999999


No 164
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=24.48  E-value=12  Score=14.92  Aligned_cols=24  Identities=8%  Similarity=0.199  Sum_probs=14.8

Q ss_pred             CHHHHHHHHHHHHHHHHHCCEEEE
Q ss_conf             147789999999999871886998
Q gi|254780869|r  233 FSSSVSRIRSIIDIAEQIGRKIVL  256 (559)
Q Consensus       233 fasni~Ri~~i~~~a~~~~R~v~i  256 (559)
                      ++.+++-...++++|++.++.+.+
T Consensus        98 la~~~~ea~~l~~~a~~~~~~~~v  121 (358)
T 3gdo_A           98 MTATAEEGETLKRAADEKGVLLSV  121 (358)
T ss_dssp             CCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred             EHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf             001036789999987624515654


No 165
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics, NPPSFA; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=24.03  E-value=24  Score=12.72  Aligned_cols=53  Identities=11%  Similarity=0.292  Sum_probs=27.7

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECHHH----HHHHHHHHHHHHHHCCEEEEEC
Q ss_conf             7777879999999998627983999941477----8999999999987188699844
Q gi|254780869|r  206 TCISEKGIKKNIYDIMKNAKGCVLVTTFSSS----VSRIRSIIDIAEQIGRKIVLLG  258 (559)
Q Consensus       206 ~~~sE~~v~~~i~~~~~~~~grViv~~fasn----i~Ri~~i~~~a~~~~R~v~i~G  258 (559)
                      ...+...+++.+.+.-+..+-..++.+..+|    +.-+.+|.++|+++|-.+++++
T Consensus       128 ~~i~~~~l~~~i~~~~~~~~~~lv~~~~~~~~~G~~~~~~~i~~~~~~~~~~~~~D~  184 (371)
T 2e7j_A          128 YAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNG  184 (371)
T ss_dssp             CCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEEC
T ss_pred             CCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHCCCEEEEEEEC
T ss_conf             776999999998754345880899996788998254447755666425427999944


No 166
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=23.92  E-value=25  Score=12.70  Aligned_cols=27  Identities=11%  Similarity=0.134  Sum_probs=15.4

Q ss_pred             EECHHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf             941477899999999998718869984
Q gi|254780869|r  231 TTFSSSVSRIRSIIDIAEQIGRKIVLL  257 (559)
Q Consensus       231 ~~fasni~Ri~~i~~~a~~~~R~v~i~  257 (559)
                      -+|+|=+.=|...+....+.|-.|+..
T Consensus       100 ~~~sSGmaAI~~~l~~l~~~Gd~iv~~  126 (414)
T 3ndn_A          100 FATASGMAAVFTSLGALLGAGDRLVAA  126 (414)
T ss_dssp             EEESSHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             EEECCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             994589999999999860689989982


No 167
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=23.30  E-value=15  Score=14.25  Aligned_cols=13  Identities=23%  Similarity=0.117  Sum_probs=6.4

Q ss_pred             HHHHHHHCCEEEE
Q ss_conf             9997403874999
Q gi|254780869|r  457 KRRQLSFVGHLSV  469 (559)
Q Consensus       457 eR~~Ls~~GiV~V  469 (559)
                      .|......|+++|
T Consensus       398 ~~~~~~~~g~~v~  410 (420)
T 3brk_X          398 KRFRRTESGICLI  410 (420)
T ss_dssp             HHSEECTTSCEEE
T ss_pred             CEEEECCCCEEEE
T ss_conf             5117847814997


No 168
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=22.98  E-value=26  Score=12.58  Aligned_cols=11  Identities=36%  Similarity=0.878  Sum_probs=5.5

Q ss_pred             EEEEECCCCCH
Q ss_conf             99996696326
Q gi|254780869|r  295 IVIATGSQGEP  305 (559)
Q Consensus       295 ~ii~TGsqge~  305 (559)
                      ++.++||=|.|
T Consensus       267 ilyTSGTTG~P  277 (663)
T 1ry2_A          267 LLYTSGSTGAP  277 (663)
T ss_dssp             EEEECCSSSSC
T ss_pred             EEECCCCCCCC
T ss_conf             99689888899


No 169
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=22.91  E-value=26  Score=12.57  Aligned_cols=10  Identities=20%  Similarity=0.544  Sum_probs=3.5

Q ss_pred             CEEEEEECCC
Q ss_conf             0899996696
Q gi|254780869|r  293 QLIVIATGSQ  302 (559)
Q Consensus       293 ~~~ii~TGsq  302 (559)
                      ++.++.++..
T Consensus        96 ~i~~~~~~~~  105 (259)
T 1tzf_A           96 NVTLVDTGDS  105 (259)
T ss_dssp             EEEEEECCSS
T ss_pred             CEEEEECCCC
T ss_conf             2379954753


No 170
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=22.48  E-value=26  Score=12.51  Aligned_cols=142  Identities=14%  Similarity=0.133  Sum_probs=58.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHC-CEEEEEC-----HHHHHHHHHHHHCC-CC-C-
Q ss_conf             87777879999999998627983999941477899999999998718-8699844-----86999999887428-76-7-
Q gi|254780869|r  205 GTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIG-RKIVLLG-----SSLKRVVSVAIDVG-II-K-  275 (559)
Q Consensus       205 ~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~-R~v~i~G-----rs~~~~~~~a~~~g-~l-~-  275 (559)
                      -+..+|.+.+.--  ...+.+=-.+..+|.++-+=+..+-+..++.+ .++-+..     .++.+.-++..... .+ . 
T Consensus       167 ~~~ltekD~~~i~--~~~~~~vd~i~lSfV~~~~dv~~~r~~l~~~~~~~~~iiaKIE~~~al~nl~eI~~~sDgimiaR  244 (470)
T 1e0t_A          167 LPALAEKDKQDLI--FGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVAR  244 (470)
T ss_dssp             CCSSCHHHHHHHH--HHHHHTCSEEEESSCCSHHHHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHHHHSSEEEEEH
T ss_pred             CCCCCHHHHHHHH--HHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEC
T ss_conf             6446387899886--11015976441035686678888876677615766347988526999987999997575789965


Q ss_pred             -CCCCCCCHHHHCCC---------CCCCEEEEEECCCC-------CHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCH
Q ss_conf             -76542265662238---------80208999966963-------26889885202777653026896699996158861
Q gi|254780869|r  276 -KDQLFLSDESFGLY---------PREQLIVIATGSQG-------EPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGN  338 (559)
Q Consensus       276 -~~~~~i~~~~~~~~---------p~~~~~ii~TGsqg-------e~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGn  338 (559)
                       +...-++.+++...         ...+-+|++|---.       -.+|-.+-+++     .-+.--|.+.+|..+..|+
T Consensus       245 GDLg~e~~~e~vp~~Qk~Ii~~~~~~~kpvi~ATq~LeSM~~~~~PTRAEv~Dv~n-----av~dGad~vmLs~ETa~G~  319 (470)
T 1e0t_A          245 GDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATMMLDSMIKNPRPTDAEAGDVAN-----AILDGTDAVMLSGESAKGK  319 (470)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHHTCEEEEECC---------CCCHHHHHHHHH-----HHHHTCSEEEECCC-----
T ss_pred             CCCHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHH-----HHHHCCCEEEECCCCCCCC
T ss_conf             66010089888789999999999865998898167788763189986345788999-----9981676687736645775


Q ss_pred             HH-HHHHHHHHHHCCC
Q ss_conf             77-8999997651031
Q gi|254780869|r  339 EV-AIGHIKNRLVEQG  353 (559)
Q Consensus       339 E~-~~~~~~n~l~~~g  353 (559)
                      .. ..-++++.+.+.-
T Consensus       320 ~P~~~v~~~~~i~~~a  335 (470)
T 1e0t_A          320 YPLEAVSIMATICERT  335 (470)
T ss_dssp             -CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             7889999999999998


No 171
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3e0w_A 3e0v_A
Probab=22.25  E-value=26  Score=12.48  Aligned_cols=50  Identities=14%  Similarity=0.161  Sum_probs=21.5

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf             7777879999999998627983999941477899999999998718869984
Q gi|254780869|r  206 TCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL  257 (559)
Q Consensus       206 ~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~  257 (559)
                      ++.+|.+..+- .-.. +.+=-.+..+|.++-+=+..+-++..+.|+.+-+.
T Consensus       188 p~ltekD~~di-~~a~-~~~vD~valSFVrs~~dv~~lr~~l~~~~~~~~ii  237 (499)
T 3hqn_D          188 PAVSAKDRVDL-QFGV-EQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMII  237 (499)
T ss_dssp             CSSCHHHHHHH-HHHH-HTTCSEEEETTCCSHHHHHHHHHHHCGGGTTSEEE
T ss_pred             CCCCHHHHHHH-HHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf             44551019999-9999-61899899668898789999999999719986699


No 172
>1e4e_A Vancomycin/teicoplanin A-type resistance protein VANA; ligase, cell WALL, antibiotic resistance, membrane, plasmid; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=22.01  E-value=27  Score=12.45  Aligned_cols=44  Identities=14%  Similarity=0.274  Sum_probs=33.9

Q ss_pred             HCCCEEEEE-CCCCCCCCCHHHHHHHCCCCEECC-HHHHHHHHHHH
Q ss_conf             124689960-543012160788898629977929-99999999999
Q gi|254780869|r   66 KNLMAIFIT-HAHEDHYGALHDLWSFLHVPVYAS-PFAIGLLEAKR  109 (559)
Q Consensus        66 ~~i~~i~iT-H~H~DHiGalp~l~~~~~~pIY~s-~~t~~li~~~~  109 (559)
                      .+++.+|.. ||-.---|.++.++..+++|--++ ..+.++...|.
T Consensus        89 ~~~D~vf~~lhG~~GEdg~iq~~le~~gipy~Gs~~~~s~l~~DK~  134 (343)
T 1e4e_A           89 NHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKS  134 (343)
T ss_dssp             EECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHSHH
T ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCH
T ss_conf             5677899887787754609999999869986168579999864706


No 173
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=21.83  E-value=27  Score=12.42  Aligned_cols=20  Identities=15%  Similarity=0.336  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCE
Q ss_conf             47789999999999871886
Q gi|254780869|r  234 SSSVSRIRSIIDIAEQIGRK  253 (559)
Q Consensus       234 asni~Ri~~i~~~a~~~~R~  253 (559)
                      +.++.-.++++++|+++|+.
T Consensus       117 a~~~~e~~~l~~~a~~~g~~  136 (383)
T 3oqb_A          117 ATNFEEALEVVKLANSKGVK  136 (383)
T ss_dssp             CSSHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHCCCCE
T ss_conf             33299998865466505966


No 174
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=21.36  E-value=25  Score=12.67  Aligned_cols=14  Identities=29%  Similarity=0.518  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             99999999999828
Q gi|254780869|r  530 ISSALRSLLKKVWG  543 (559)
Q Consensus       530 ir~~irk~~~k~~~  543 (559)
                      ++..+|+++-++.|
T Consensus       284 ~~~~~~~~~~~~~~  297 (297)
T 2ux8_A          284 LEPAVRAFAVKALG  297 (297)
T ss_dssp             THHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             63999999998639


No 175
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=21.33  E-value=27  Score=12.35  Aligned_cols=21  Identities=14%  Similarity=0.252  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHCCEEEEE
Q ss_conf             899999999998718869984
Q gi|254780869|r  237 VSRIRSIIDIAEQIGRKIVLL  257 (559)
Q Consensus       237 i~Ri~~i~~~a~~~~R~v~i~  257 (559)
                      -++++++++.|++.+--|+.+
T Consensus       196 ~e~~~~l~~~~~~~~~~ii~D  216 (416)
T 1bw0_A          196 RKHVEDIVRLAEELRLPLFSD  216 (416)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHHHHHCCEEEEEE
T ss_conf             678999876776448269830


No 176
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=21.07  E-value=28  Score=12.32  Aligned_cols=41  Identities=17%  Similarity=0.473  Sum_probs=30.2

Q ss_pred             EECHHHHHHHHHHHHHHHHHCC-EEEE--ECHHHHHHHHHHHHC
Q ss_conf             9414778999999999987188-6998--448699999988742
Q gi|254780869|r  231 TTFSSSVSRIRSIIDIAEQIGR-KIVL--LGSSLKRVVSVAIDV  271 (559)
Q Consensus       231 ~~fasni~Ri~~i~~~a~~~~R-~v~i--~Grs~~~~~~~a~~~  271 (559)
                      +.|.|-+-|++.+++.+.+.+. .|++  +|++..+.+.+|...
T Consensus        39 Tpf~s~vKR~~KlL~~~~~~~~~eV~v~gmG~AI~kal~la~~f   82 (140)
T 3iab_B           39 TPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHF   82 (140)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf             85799999999999887525873899983137899999999985


No 177
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence of substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=21.02  E-value=28  Score=12.31  Aligned_cols=21  Identities=10%  Similarity=0.066  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHCCEEEEE
Q ss_conf             899999999998718869984
Q gi|254780869|r  237 VSRIRSIIDIAEQIGRKIVLL  257 (559)
Q Consensus       237 i~Ri~~i~~~a~~~~R~v~i~  257 (559)
                      .++++++++.|++.+-.|+.+
T Consensus       179 ~~~~~~l~~~a~~~~~~ii~D  199 (389)
T 1gd9_A          179 KKDLEEIADFVVEHDLIVISD  199 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEE
T ss_conf             999999999999869599995


No 178
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, transcription-coupled DNA repair, ATP-binding, DNA damage, DNA repair; 1.95A {Escherichia coli} PDB: 2b2n_A*
Probab=20.98  E-value=28  Score=12.30  Aligned_cols=101  Identities=6%  Similarity=-0.013  Sum_probs=43.9

Q ss_pred             CCCCCCCCCEEEECCCHHHHHHHH-------HCCCEEEEECCCC--CCCCCHHHHHHHCCCCEECC-HHHHHHHHHHHHH
Q ss_conf             678887675028707957987664-------1246899605430--12160788898629977929-9999999999985
Q gi|254780869|r   42 SFPKDDLPGVDLVFPDITFIMKER-------KNLMAIFITHAHE--DHYGALHDLWSFLHVPVYAS-PFAIGLLEAKRVY  111 (559)
Q Consensus        42 ~fp~~~~~gid~iiPd~~~l~~~~-------~~i~~i~iTH~H~--DHiGalp~l~~~~~~pIY~s-~~t~~li~~~~~~  111 (559)
                      .||..+.+-.|...|+-+-+.++.       .+=.+|+||++..  -.+-.-. .+......+-.+ .....-+..+|..
T Consensus        69 ~~P~~e~lpye~~~~~~~~~~~R~~~L~~L~~~~~~iivtt~~al~~~~~~~~-~~~~~~~~l~~G~~~~~~~l~~~L~~  147 (483)
T 3hjh_A           69 NLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS-FLHGHALVMKKGQRLSRDALRTQLDS  147 (483)
T ss_dssp             ECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHBCCCCHH-HHHHTCEEEETTCCCCHHHHHHHHHH
T ss_pred             ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHCCCCCHH-HHHHCCEEEECCCEECHHHHHHHHHH
T ss_conf             66754457766679856999999999998634899856966677418899899-99717578726989558999999999


Q ss_pred             CCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCC
Q ss_conf             48865562255175555776348999985567777
Q gi|254780869|r  112 ERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIP  146 (559)
Q Consensus       112 ~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip  146 (559)
                      .+.....   .+...-.+.+-+--|..||.++.-|
T Consensus       148 ~GY~r~~---~Ve~~GefsvRGgIiDIfp~~~~~P  179 (483)
T 3hjh_A          148 AGYRHVD---QVMEHGEYATRGALLDLFPMGSELP  179 (483)
T ss_dssp             TTCEECS---SCCSTTEEEEETTEEEECCBTCSSC
T ss_pred             HCCCCCC---EECCCCEEEEECCEEEECCCCCCCC
T ss_conf             5895533---3304756998789758743667963


No 179
>4eug_A UDG, UNG, protein (glycosylase); hydrolase; 1.40A {Escherichia coli B} SCOP: c.18.1.1 PDB: 5eug_A 1eug_A 2uug_A 3eug_A 2eug_A 1uug_A 1lqj_A 1lqm_A 1lqg_A 1flz_A 1eui_A 2jhq_A
Probab=20.60  E-value=28  Score=12.25  Aligned_cols=53  Identities=19%  Similarity=0.293  Sum_probs=23.0

Q ss_pred             HHHCCCCCCEEEEECCCCCCCCCCCCCHH-----HHHHHHHHHHHHCCCCEEEEECHHHH
Q ss_conf             98608788299996356457888777787-----99999999986279839999414778
Q gi|254780869|r  183 LCAIGNEGILALMCDSTNAMREGTCISEK-----GIKKNIYDIMKNAKGCVLVTTFSSSV  237 (559)
Q Consensus       183 l~~~~~~gv~~Li~esT~~~~~~~~~sE~-----~v~~~i~~~~~~~~grViv~~fasni  237 (559)
                      |..++++||++|=+-=|  -+.|.+.|.+     .+.+.+.+.+.+.+..|++-...++.
T Consensus       111 L~~Wa~QGVLLLNt~LT--v~~g~~~SH~~~gWe~ft~~ii~~l~~~~~~vVf~LWG~~A  168 (229)
T 4eug_A          111 LESWARQGVLLLNTVLT--VRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHA  168 (229)
T ss_dssp             CHHHHTTTEEEEESSCC--EETTBTTTTTTSSHHHHHHHHHHHHHHHCSSCEEEEESHHH
T ss_pred             CCHHHHCCEEEEECEEE--EECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHH
T ss_conf             64375398799723388--87778888778787999999999998468984999967688


No 180
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.3A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=20.43  E-value=29  Score=12.22  Aligned_cols=19  Identities=5%  Similarity=0.092  Sum_probs=8.9

Q ss_pred             EEEEECHHHHHHHHHHHHH
Q ss_conf             9999414778999999999
Q gi|254780869|r  228 VLVTTFSSSVSRIRSIIDI  246 (559)
Q Consensus       228 Viv~~fasni~Ri~~i~~~  246 (559)
                      +.+..-..-.+|++.++++
T Consensus       142 iMvGG~~~~~e~v~pil~~  160 (474)
T 2iz1_A          142 MMPGGQKEAYDLVAPIFEQ  160 (474)
T ss_dssp             EEEEECHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
T ss_conf             1017739999999999999


No 181
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} SCOP: c.67.1.4 PDB: 3ou5_A
Probab=20.43  E-value=10  Score=15.43  Aligned_cols=49  Identities=16%  Similarity=0.152  Sum_probs=27.7

Q ss_pred             HHHHHCCEEEEEEE--ECCCC-----CEEECCEEEEECCEECCCCHHHHHHHHHHHHH
Q ss_conf             97403874999999--83899-----88005379994012125665889999999999
Q gi|254780869|r  459 RQLSFVGHLSVNVL--LDNHY-----NIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVI  509 (559)
Q Consensus       459 ~~Ls~~GiV~V~vi--id~~~-----~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~  509 (559)
                      +.|...|+.+=--.  .|+..     ==++.|.+++||+-  +.+...+.+.+.+.+.
T Consensus       384 ~~Le~~gI~vNkn~iP~D~~~~~~sGiRiGT~aiTtrG~~--e~dm~~iA~lI~~~l~  439 (490)
T 2a7v_A          384 RVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFR--EDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             HHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCEEECCCCCCCCCCCCCCCCEEECCHHHHHCCCC--HHHHHHHHHHHHHHHH
T ss_conf             9999869076877478999999998147677899858998--8999999999999998


No 182
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 1ars_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* 1cq7_A* ...
Probab=20.16  E-value=29  Score=12.19  Aligned_cols=31  Identities=10%  Similarity=0.168  Sum_probs=19.4

Q ss_pred             CEEEEECHHH-------HHHHHHHHHHHHHHCCEEEEE
Q ss_conf             3999941477-------899999999998718869984
Q gi|254780869|r  227 CVLVTTFSSS-------VSRIRSIIDIAEQIGRKIVLL  257 (559)
Q Consensus       227 rViv~~fasn-------i~Ri~~i~~~a~~~~R~v~i~  257 (559)
                      ++++-+..+|       -+++++++++|++++--|+.+
T Consensus       174 ~~ii~~~P~NPTG~v~s~e~l~~l~~~a~~~~~~ii~D  211 (396)
T 2q7w_A          174 VVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFD  211 (396)
T ss_dssp             EEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             89996899888786879999999999986367439988


No 183
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=20.13  E-value=29  Score=12.18  Aligned_cols=17  Identities=24%  Similarity=0.583  Sum_probs=9.2

Q ss_pred             EEEECC-CCCCCCCHHHH
Q ss_conf             996054-30121607888
Q gi|254780869|r   71 IFITHA-HEDHYGALHDL   87 (559)
Q Consensus        71 i~iTH~-H~DHiGalp~l   87 (559)
                      +=.+|+ |++|.--+.++
T Consensus        67 iN~SHg~~e~~~~~i~~i   84 (511)
T 3gg8_A           67 LNFSHGDHETHARTVQNI   84 (511)
T ss_dssp             EETTSSCHHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHH
T ss_conf             988999999999999999


No 184
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=20.09  E-value=29  Score=12.17  Aligned_cols=52  Identities=12%  Similarity=0.117  Sum_probs=25.5

Q ss_pred             ECCCEEEEECC-CCEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEE
Q ss_conf             00322789738-9704501232132021233100255058899997403874999999
Q gi|254780869|r  416 VRNGKMLRLFP-DPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVL  472 (559)
Q Consensus       416 ~~NGd~i~l~~-~~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vi  472 (559)
                      ...||...+.+ +.+.+.++.+- -+-+.|..+.. .   -=|....+..++.-+.++
T Consensus       408 ~~tgd~~~~~~~G~l~~~GR~~d-~i~~~G~~i~~-~---~IE~~l~~~~~V~~~~v~  460 (529)
T 2v7b_A          408 IRSGDKYCRLPNGCYVYAGRSDD-MLKVSGQYVSP-V---EVEMVLVQHDAVLEAAVV  460 (529)
T ss_dssp             EEEEEEEEECTTSCEEEEEEGGG-CBC----CBCH-H---HHHHHHTTSTTEEEEEEE
T ss_pred             CCCCCCCCCCCCCCEEECCCCCC-EEEECCEEECH-H---HHHHHHHHCCCCCEEEEE
T ss_conf             22477422123551898543436-79989999988-9---999999729980489999


Done!