Query gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 559 No_of_seqs 200 out of 1513 Neff 6.9 Searched_HMMs 23785 Date Tue May 31 22:00:17 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780869.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3bk2_A RNAse J, metal dependen 100.0 0 0 987.6 60.2 539 3-554 14-561 (562) 2 2az4_A Hypothetical protein EF 100.0 0 0 476.7 21.8 386 2-424 3-429 (429) 3 3af5_A Putative uncharacterize 100.0 0 0 451.3 28.6 397 2-425 185-651 (651) 4 2xr1_A Cleavage and polyadenyl 100.0 0 0 440.1 29.4 391 2-424 180-639 (640) 5 2i7t_A Cleavage and polyadenyl 100.0 0 0 438.6 25.1 398 2-425 8-457 (459) 6 2i7x_A Protein CFT2; polyadeny 100.0 4.8E-30 2E-34 233.6 24.5 310 10-349 8-384 (717) 7 1zkp_A Hypothetical protein BA 99.9 1.6E-21 6.6E-26 172.3 14.6 213 1-250 20-252 (268) 8 1e5d_A Rubredoxin\:oxygen oxid 99.8 2.3E-19 9.6E-24 156.8 14.9 325 17-383 31-389 (402) 9 3g1p_A Protein PHNP; C-P lyase 99.8 1E-19 4.4E-24 159.2 10.9 186 19-237 39-227 (258) 10 1ycg_A Nitric oxide reductase; 99.8 1.6E-18 6.8E-23 150.6 15.1 321 19-383 36-389 (398) 11 2ohh_A Type A flavoprotein FPR 99.8 7.1E-17 3E-21 138.9 16.4 326 20-383 36-395 (404) 12 2cbn_A Ribonuclease Z; phospho 99.7 6.6E-16 2.8E-20 131.9 17.6 136 5-155 3-153 (306) 13 2q9u_A A-type flavoprotein; fl 99.6 2.4E-13 1E-17 113.4 18.5 127 20-167 42-173 (414) 14 1vme_A Flavoprotein; TM0755, s 99.5 7E-12 2.9E-16 102.9 22.4 124 20-166 53-181 (410) 15 3jxp_A Coenzyme PQQ synthesis 99.5 8.8E-14 3.7E-18 116.6 12.2 157 20-202 42-227 (321) 16 3adr_A Putative uncharacterize 99.5 4.4E-13 1.9E-17 111.5 15.6 144 1-167 1-167 (261) 17 2xf4_A Hydroxyacylglutathione 99.5 2.4E-13 1E-17 113.5 12.2 147 5-170 2-156 (210) 18 1sml_A Protein (penicillinase) 99.5 1.3E-12 5.6E-17 108.1 14.0 143 15-170 34-190 (269) 19 1a7t_A Metallo-beta-lactamase; 99.4 6.9E-13 2.9E-17 110.2 10.8 137 11-169 29-168 (232) 20 3bv6_A Metal-dependent hydrola 99.4 1.1E-10 4.7E-15 94.3 21.9 119 66-199 132-275 (379) 21 2bib_A CBPE, teichoic acid pho 99.4 2.3E-12 9.5E-17 106.5 12.7 230 2-259 4-282 (547) 22 3l6n_A Metallo-beta-lactamase; 99.4 1E-12 4.4E-17 108.9 11.0 132 15-168 27-161 (219) 23 2e7y_A TRNAse Z; tRNA maturati 99.4 3.6E-12 1.5E-16 105.0 13.7 153 20-204 11-215 (280) 24 2zo4_A Metallo-beta-lactamase 99.4 1.9E-13 8.1E-18 114.2 7.1 136 18-168 21-193 (317) 25 1y44_A Ribonuclease Z; zinc-de 99.4 4.1E-11 1.7E-15 97.4 18.0 139 5-157 2-153 (320) 26 2zwr_A Metallo-beta-lactamase 99.4 1.2E-12 5E-17 108.5 9.4 140 7-169 2-148 (207) 27 1k07_A FEZ-1 beta-lactamase; m 99.4 5E-12 2.1E-16 104.0 12.1 137 18-168 24-177 (263) 28 2gmn_A Metallo-beta-lactamase; 99.4 2.3E-12 9.5E-17 106.5 9.9 128 15-156 31-169 (274) 29 1m2x_A Class B carbapenemase B 99.4 6E-12 2.5E-16 103.4 11.5 132 17-170 25-159 (223) 30 2vw8_A PA1000, PQSE; quinolone 99.4 2E-12 8.6E-17 106.8 8.3 141 8-166 16-181 (303) 31 2whg_A VIM-4 metallo-beta-lact 99.3 5.5E-12 2.3E-16 103.7 8.6 133 18-168 37-170 (230) 32 2gcu_A Putative hydroxyacylglu 99.3 2E-11 8.4E-16 99.6 10.3 128 18-168 14-145 (245) 33 2yz3_A Metallo-beta-lactamase; 99.3 7.3E-12 3.1E-16 102.8 7.8 134 17-169 67-202 (266) 34 3hnn_A Putative diflavin flavo 99.3 1.2E-10 5.1E-15 94.0 13.9 131 16-167 38-176 (262) 35 3iog_A Beta-lactamase; hydrola 99.3 2.2E-11 9.2E-16 99.4 9.9 146 11-172 15-173 (227) 36 3dha_A N-acyl homoserine lacto 99.3 2.1E-11 8.9E-16 99.5 9.8 156 1-167 5-197 (254) 37 1p9e_A Methyl parathion hydrol 99.3 7.7E-12 3.3E-16 102.6 6.9 139 16-167 94-257 (331) 38 2wyl_A L-ascorbate-6-phosphate 99.3 4.2E-09 1.8E-13 83.0 20.7 119 66-199 108-250 (360) 39 1xm8_A Glyoxalase II; structur 99.3 3.1E-11 1.3E-15 98.3 9.7 132 5-168 2-134 (254) 40 1mqo_A Beta-lactamase II; alph 99.3 3E-11 1.2E-15 98.4 9.6 141 8-170 28-173 (227) 41 3esh_A Protein similar to meta 99.2 3.5E-12 1.5E-16 105.1 4.4 142 16-167 45-208 (280) 42 2qed_A Hydroxyacylglutathione 99.2 1.4E-10 5.9E-15 93.6 11.5 131 1-168 5-137 (258) 43 2p18_A Glyoxalase II; metallop 99.2 6.5E-11 2.7E-15 95.9 8.8 141 4-168 29-183 (311) 44 1qh5_A Glyoxalase II, protein 99.2 2.3E-10 9.5E-15 92.1 11.1 132 5-168 2-137 (260) 45 1jjt_A IMP-1 metallo beta-lact 99.2 8.2E-11 3.4E-15 95.2 8.8 134 12-168 26-161 (228) 46 3kl7_A Putative metal-dependen 99.2 2.2E-09 9.5E-14 84.9 15.8 183 18-254 36-229 (235) 47 2r2d_A AGR_PTI_140P, Zn-depend 99.2 2.3E-10 9.7E-15 92.0 10.2 142 17-166 41-214 (276) 48 2fhx_A SPM-1; metallo-beta-lac 99.1 5.8E-10 2.4E-14 89.1 11.7 139 17-170 28-189 (246) 49 2p4z_A Metal-dependent hydrola 99.0 2.5E-09 1E-13 84.6 11.0 70 15-101 30-103 (284) 50 1ztc_A Hypothetical protein TM 99.0 3E-11 1.3E-15 98.4 -0.3 146 4-167 13-176 (221) 51 3md7_A Beta-lactamase-like; ss 99.0 3.8E-08 1.6E-12 76.1 14.7 79 20-111 64-148 (293) 52 2cfu_A SDSA1; SDS-hydrolase, l 99.0 2.1E-09 9E-14 85.0 8.0 136 19-169 123-303 (658) 53 1vjn_A Zn-dependent hydrolase 99.0 4.6E-08 1.9E-12 75.5 14.7 121 18-197 19-145 (220) 54 3h3e_A Uncharacterized protein 98.5 1.5E-06 6.4E-11 64.6 11.7 52 14-89 28-83 (267) 55 2p97_A Hypothetical protein; p 98.5 3.5E-07 1.5E-11 69.1 8.4 121 15-168 20-140 (201) 56 3nyt_A Aminotransferase WBPE; 96.4 0.024 1E-06 34.4 9.1 81 320-411 70-152 (367) 57 3dr4_A Putative perosamine syn 95.0 0.082 3.4E-06 30.5 7.1 22 251-272 96-117 (391) 58 3frk_A QDTB; aminotransferase, 93.9 0.32 1.3E-05 26.3 10.1 22 251-272 76-97 (373) 59 2oga_A Transaminase; PLP-depen 93.1 0.43 1.8E-05 25.4 10.3 78 321-409 99-178 (399) 60 1mdo_A ARNB aminotransferase; 92.4 0.53 2.2E-05 24.7 8.1 79 321-410 75-155 (393) 61 3b8x_A WBDK, pyridoxamine 5-ph 92.2 0.56 2.3E-05 24.5 8.6 79 321-410 76-156 (390) 62 2c81_A Glutamine-2-deoxy-scyll 92.0 0.59 2.5E-05 24.4 9.4 153 197-353 27-220 (418) 63 3bb8_A CDP-4-keto-6-deoxy-D-gl 90.4 0.35 1.5E-05 26.0 4.7 79 321-410 106-186 (437) 64 3ju7_A Putative PLP-dependent 89.8 0.68 2.9E-05 23.9 5.8 13 369-381 112-124 (377) 65 2dt8_A DEGV family protein; fa 86.9 1.4 5.8E-05 21.7 6.1 165 206-381 62-243 (280) 66 2rfg_A Dihydrodipicolinate syn 86.3 1.2 5E-05 22.2 5.3 77 178-256 18-100 (297) 67 2ehh_A DHDPS, dihydrodipicolin 86.2 1.5 6.3E-05 21.4 7.0 77 178-256 18-100 (294) 68 2po3_A 4-dehydrase; external a 86.0 1.5 6.4E-05 21.4 8.5 118 210-332 54-196 (424) 69 1mgp_A Hypothetical protein TM 85.9 1.5 6.5E-05 21.3 7.8 171 207-387 90-279 (313) 70 2vc6_A MOSA, dihydrodipicolina 84.7 1.4 6.1E-05 21.6 5.0 77 178-256 18-100 (292) 71 1o69_A Aminotransferase; struc 84.5 1.8 7.5E-05 20.9 8.1 22 251-272 72-93 (394) 72 3kl7_A Putative metal-dependen 84.0 0.44 1.9E-05 25.3 2.2 44 368-411 185-228 (235) 73 3b4u_A Dihydrodipicolinate syn 82.1 2.2 9.2E-05 20.2 6.4 77 178-256 21-103 (294) 74 3cpr_A Dihydrodipicolinate syn 81.3 2.3 9.8E-05 20.1 6.3 77 178-256 34-116 (304) 75 3fkr_A L-2-keto-3-deoxyarabona 81.3 2.2 9.5E-05 20.2 4.9 77 178-256 26-108 (309) 76 2r91_A 2-keto-3-deoxy-(6-phosp 81.2 2.4 9.9E-05 20.0 5.2 76 178-256 16-95 (286) 77 3a5f_A Dihydrodipicolinate syn 80.8 2.4 0.0001 19.9 7.4 78 178-257 19-102 (291) 78 3fxa_A SIS domain protein; YP_ 79.2 2.6 0.00011 19.7 4.7 11 248-258 42-52 (201) 79 3noe_A DAP-A, dihydrodipicolin 77.7 3 0.00013 19.3 5.7 77 178-256 19-101 (292) 80 2vpi_A GMP synthase; guanine m 77.5 1.7 7E-05 21.1 3.3 84 26-109 19-113 (218) 81 2yxg_A DHDPS, dihydrodipicolin 76.2 3.3 0.00014 19.0 7.0 78 178-257 18-101 (289) 82 3flu_A DHDPS, dihydrodipicolin 76.1 3.3 0.00014 19.0 6.8 78 178-257 25-108 (297) 83 3m5v_A DHDPS, dihydrodipicolin 76.0 3.3 0.00014 19.0 6.1 77 178-256 25-108 (301) 84 1o5k_A DHDPS, dihydrodipicolin 75.9 3.3 0.00014 18.9 6.2 77 178-256 30-112 (306) 85 2nuw_A 2-keto-3-deoxygluconate 74.6 3.6 0.00015 18.7 4.6 76 178-256 17-96 (288) 86 1xxx_A DHDPS, dihydrodipicolin 74.3 3.6 0.00015 18.7 6.9 70 186-257 44-115 (303) 87 3eb2_A Putative dihydrodipicol 73.8 3 0.00013 19.3 3.8 77 178-256 22-104 (300) 88 1a9x_B Carbamoyl phosphate syn 72.4 4 0.00017 18.4 4.4 31 376-411 251-281 (379) 89 2yva_A DNAA initiator-associat 72.4 3.9 0.00016 18.5 4.1 107 234-358 24-141 (196) 90 1xky_A Dihydrodipicolinate syn 72.2 4.1 0.00017 18.3 6.0 77 178-256 30-112 (301) 91 2ojp_A DHDPS, dihydrodipicolin 72.1 4.1 0.00017 18.3 4.3 77 178-256 19-101 (292) 92 1pzx_A Hypothetical protein AP 71.8 4.1 0.00017 18.3 5.1 167 207-384 64-252 (289) 93 2r8w_A AGR_C_1641P; APC7498, d 70.8 4.4 0.00018 18.1 6.1 70 186-257 64-135 (332) 94 1w3i_A EDA, 2-keto-3-deoxy glu 68.2 4.9 0.00021 17.7 4.3 75 178-255 17-95 (293) 95 1b9h_A AHBA synthase, protein 67.8 5 0.00021 17.7 10.6 60 210-273 40-100 (388) 96 2wkj_A N-acetylneuraminate lya 67.1 5.1 0.00022 17.6 6.5 77 178-256 29-111 (303) 97 2hmc_A AGR_L_411P, dihydrodipi 66.3 5.3 0.00022 17.5 4.4 76 178-256 44-123 (344) 98 2a9v_A GMP synthase; NP_394403 64.7 3.9 0.00016 18.5 2.8 78 31-109 13-102 (212) 99 2him_A L-asparaginase 1; hydro 64.2 5.8 0.00024 17.2 6.0 16 62-77 96-111 (358) 100 3daq_A DHDPS, dihydrodipicolin 64.1 5.8 0.00024 17.2 7.1 78 178-257 20-103 (292) 101 2am1_A SP protein, UDP-N-acety 64.0 5.9 0.00025 17.2 8.7 39 368-407 324-374 (454) 102 2v9d_A YAGE; dihydrodipicolini 63.4 6 0.00025 17.1 6.0 94 162-257 32-132 (343) 103 3lup_A DEGV family protein; PS 61.1 6.6 0.00028 16.8 7.1 168 206-383 65-250 (285) 104 1f6k_A N-acetylneuraminate lya 59.9 6.9 0.00029 16.7 6.7 77 178-256 21-104 (293) 105 2pcq_A Putative dihidrodipicol 59.6 4.1 0.00017 18.3 2.2 63 188-256 29-93 (283) 106 3dz1_A Dihydrodipicolinate syn 59.4 7 0.00029 16.6 6.7 78 178-257 26-108 (313) 107 3cvj_A Putative phosphoheptose 57.8 7.4 0.00031 16.4 8.2 36 321-358 105-140 (243) 108 3g0t_A Putative aminotransfera 57.0 7.6 0.00032 16.4 7.7 45 213-257 170-221 (437) 109 3h5d_A DHDPS, dihydrodipicolin 55.8 8 0.00033 16.2 6.3 65 186-252 37-103 (311) 110 3jr7_A Uncharacterized EGV fam 50.9 9.4 0.0004 15.7 3.8 157 217-384 88-268 (298) 111 1dos_A Aldolase class II; lyas 49.9 9.8 0.00041 15.6 3.1 43 215-257 15-59 (358) 112 2yvq_A Carbamoyl-phosphate syn 48.6 10 0.00043 15.4 3.7 40 68-107 24-65 (143) 113 2qjw_A Uncharacterized protein 46.9 11 0.00045 15.3 4.3 67 181-268 23-90 (176) 114 3e96_A Dihydrodipicolinate syn 46.7 11 0.00046 15.2 6.6 77 178-256 30-111 (316) 115 1rtt_A Conserved hypothetical 46.5 11 0.00046 15.2 3.4 31 321-351 69-100 (193) 116 1vim_A Hypothetical protein AF 45.3 11 0.00048 15.1 7.6 36 321-358 86-121 (200) 117 2de0_X Alpha-(1,6)-fucosyltran 45.2 11 0.00045 15.3 2.4 15 376-390 389-403 (526) 118 3egl_A DEGV family protein; al 44.2 12 0.0005 15.0 4.6 51 208-258 45-98 (277) 119 2uv9_A Fatty acid synthase alp 43.3 12 0.00051 14.9 7.9 84 295-393 654-748 (1878) 120 2x5d_A Probable aminotransfera 43.0 12 0.00052 14.9 8.0 33 225-257 172-211 (412) 121 1jeo_A MJ1247, hypothetical pr 41.2 13 0.00055 14.7 8.1 36 321-358 79-114 (180) 122 2fnu_A Aminotransferase; prote 40.6 13 0.00056 14.6 8.3 140 210-354 34-212 (375) 123 2dkj_A Serine hydroxymethyltra 38.4 8.3 0.00035 16.1 0.9 66 459-536 330-403 (407) 124 3ecd_A Serine hydroxymethyltra 37.1 4.7 0.0002 17.9 -0.5 73 459-538 339-419 (425) 125 3d0c_A Dihydrodipicolinate syn 36.9 15 0.00064 14.2 5.9 78 177-256 29-111 (314) 126 2uv8_A Fatty acid synthase sub 36.9 15 0.00064 14.2 8.7 84 295-393 677-773 (1887) 127 2g7z_A Conserved hypothetical 36.5 15 0.00065 14.2 5.5 53 206-258 66-119 (282) 128 3elf_A Fructose-bisphosphate a 36.2 16 0.00065 14.1 3.1 42 216-257 8-51 (349) 129 3kts_A Glycerol uptake operon 35.6 16 0.00067 14.1 3.7 40 216-257 21-60 (192) 130 3h7f_A Serine hydroxymethyltra 35.6 9.6 0.0004 15.6 0.9 71 458-537 355-433 (447) 131 1qyc_A Phenylcoumaran benzylic 35.2 16 0.00068 14.0 2.7 83 1-86 1-96 (308) 132 3f0h_A Aminotransferase; RER07 34.4 17 0.0007 13.9 7.7 20 239-258 162-181 (376) 133 3n9r_A Fructose-bisphosphate a 34.0 14 0.00059 14.4 1.6 266 217-542 5-298 (307) 134 2grx_C Protein TONB; beta barr 34.0 8.8 0.00037 15.9 0.5 35 455-490 154-189 (229) 135 2i2w_A Phosphoheptose isomeras 33.2 17 0.00073 13.8 3.5 36 321-358 128-163 (212) 136 3dbi_A Sugar-binding transcrip 32.9 17 0.00073 13.8 6.8 10 345-354 203-212 (338) 137 3ke8_A 4-hydroxy-3-methylbut-2 32.7 18 0.00074 13.7 7.6 43 217-260 90-132 (326) 138 3m92_A Protein YCIN; DUF2498, 32.5 18 0.00074 13.7 2.1 77 74-178 4-83 (107) 139 3gbx_A Serine hydroxymethyltra 31.9 17 0.0007 13.9 1.7 69 459-539 338-414 (420) 140 3oj0_A Glutr, glutamyl-tRNA re 31.8 18 0.00076 13.6 3.6 76 219-303 14-92 (144) 141 3lvm_A Cysteine desulfurase; s 30.9 19 0.00079 13.6 5.4 67 183-258 130-200 (423) 142 2vxo_A GMP synthase [glutamine 30.7 19 0.00079 13.5 3.3 214 30-256 28-272 (697) 143 1m3s_A Hypothetical protein YC 30.5 19 0.0008 13.5 3.6 36 321-358 76-111 (186) 144 1jye_A Lactose operon represso 30.2 19 0.00081 13.5 7.4 66 340-410 196-262 (349) 145 1ibj_A CBL, cystathionine beta 29.4 20 0.00083 13.4 6.6 103 208-315 133-245 (464) 146 2isw_A Putative fructose-1,6-b 29.2 20 0.00084 13.3 2.1 158 217-396 6-182 (323) 147 2f5t_X Archaeal transcriptiona 28.9 20 0.00085 13.3 7.6 50 208-257 6-55 (233) 148 2o0r_A RV0858C (N-succinyldiam 28.9 20 0.00085 13.3 4.1 21 237-257 179-199 (411) 149 1rvg_A Fructose-1,6-bisphospha 28.4 20 0.00084 13.3 1.6 264 217-542 5-296 (305) 150 1cs1_A CGS, protein (cystathio 27.7 21 0.00089 13.2 5.7 26 232-257 72-97 (386) 151 3iv4_A Putative oxidoreductase 27.6 21 0.00089 13.2 4.2 37 384-423 55-95 (112) 152 3hl3_A Glucose-1-phosphate thy 27.5 2.6 0.00011 19.7 -3.1 17 339-355 55-71 (269) 153 1iow_A DD-ligase, DDLB, D-ALA\ 27.2 22 0.00091 13.1 1.6 88 1-108 1-97 (306) 154 1wls_A L-asparaginase; structu 26.7 22 0.00092 13.1 2.4 37 61-97 67-106 (328) 155 2dou_A Probable N-succinyldiam 25.9 23 0.00095 12.9 5.8 21 237-257 177-197 (376) 156 3gjz_A Microcin immunity prote 25.3 23 0.00098 12.9 7.3 46 305-353 213-258 (336) 157 2f46_A Hypothetical protein; 7 25.1 23 0.00098 12.9 7.7 57 208-273 86-142 (156) 158 3op7_A Aminotransferase class 24.9 24 0.00099 12.8 3.6 21 237-257 173-193 (375) 159 3c5e_A Acyl-coenzyme A synthet 24.7 24 0.001 12.8 9.0 88 416-512 435-528 (570) 160 1rv3_A Serine hydroxymethyltra 24.7 24 0.001 12.8 2.6 51 459-511 374-431 (483) 161 1e6u_A GDP-fucose synthetase; 24.7 22 0.00092 13.1 1.2 34 1-38 1-34 (321) 162 2k9k_A TONB2; metal transport; 24.6 24 0.001 12.8 4.0 30 459-489 34-64 (106) 163 3n0l_A Serine hydroxymethyltra 24.6 24 0.001 12.8 6.1 47 480-538 360-406 (417) 164 3gdo_A Uncharacterized oxidore 24.5 12 0.00051 14.9 -0.1 24 233-256 98-121 (358) 165 2e7j_A SEP-tRNA:Cys-tRNA synth 24.0 24 0.001 12.7 7.2 53 206-258 128-184 (371) 166 3ndn_A O-succinylhomoserine su 23.9 25 0.001 12.7 4.6 27 231-257 100-126 (414) 167 3brk_X Glucose-1-phosphate ade 23.3 15 0.00063 14.2 0.2 13 457-469 398-410 (420) 168 1ry2_A Acetyl-coenzyme A synth 23.0 26 0.0011 12.6 6.5 11 295-305 267-277 (663) 169 1tzf_A Glucose-1-phosphate cyt 22.9 26 0.0011 12.6 1.4 10 293-302 96-105 (259) 170 1e0t_A Pyruvate kinase, PK; ph 22.5 26 0.0011 12.5 3.0 142 205-353 167-335 (470) 171 3hqn_D Pyruvate kinase, PK; TI 22.2 26 0.0011 12.5 3.2 50 206-257 188-237 (499) 172 1e4e_A Vancomycin/teicoplanin 22.0 27 0.0011 12.4 7.9 44 66-109 89-134 (343) 173 3oqb_A Oxidoreductase; structu 21.8 27 0.0011 12.4 8.3 20 234-253 117-136 (383) 174 2ux8_A Glucose-1-phosphate uri 21.4 25 0.001 12.7 1.0 14 530-543 284-297 (297) 175 1bw0_A TAT, protein (tyrosine 21.3 27 0.0012 12.4 4.6 21 237-257 196-216 (416) 176 3iab_B Ribonucleases P/MRP pro 21.1 28 0.0012 12.3 4.6 41 231-271 39-82 (140) 177 1gd9_A Aspartate aminotransfer 21.0 28 0.0012 12.3 6.6 21 237-257 179-199 (389) 178 3hjh_A Transcription-repair-co 21.0 28 0.0012 12.3 1.8 101 42-146 69-179 (483) 179 4eug_A UDG, UNG, protein (glyc 20.6 28 0.0012 12.2 2.5 53 183-237 111-168 (229) 180 2iz1_A 6-phosphogluconate dehy 20.4 29 0.0012 12.2 9.6 19 228-246 142-160 (474) 181 2a7v_A Serine hydroxymethyltra 20.4 10 0.00043 15.4 -1.2 49 459-509 384-439 (490) 182 2q7w_A Aspartate aminotransfer 20.2 29 0.0012 12.2 7.7 31 227-257 174-211 (396) 183 3gg8_A Pyruvate kinase; malari 20.1 29 0.0012 12.2 3.2 17 71-87 67-84 (511) 184 2v7b_A Benzoate-coenzyme A lig 20.1 29 0.0012 12.2 6.0 52 416-472 408-460 (529) No 1 >3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* Probab=100.00 E-value=0 Score=987.59 Aligned_cols=539 Identities=32% Similarity=0.550 Sum_probs=511.2 Q ss_pred CCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCC Q ss_conf 86399994068683466069999517778648999776767888767502870795798766412468996054301216 Q gi|254780869|r 3 NEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYG 82 (559) Q Consensus 3 ~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiG 82 (559) +++|+|+||||++|||+|||++++ ++++||+|||++||+++.||+|+++|||+||++++++|+||||||||+||+| T Consensus 14 ~~~i~i~pLGG~~EIG~n~~~~e~----~~~~iliD~G~~f~~~~~~gid~iiPd~~~l~~~~~~i~ai~lTHaH~DH~G 89 (562) T 3bk2_A 14 QDHVEIIPLGGMGEIGKNITVFRF----RDEIFVLDGGLAFPEEGMPGVDLLIPRVDYLIEHRHKIKAWVLTHGHEDHIG 89 (562) T ss_dssp CCCEEEEEEESBSBSSCCEEEEEE----TTEEEEECCCCBCCCTTSTTCCEEEECCHHHHHTGGGEEEEECCCCCHHHHT T ss_pred CCEEEEEECCCCCHHHHCEEEEEE----CCEEEEEECCCCCCCCCCCCCCEEECCCHHHHHCCCCCEEEEECCCCHHHHC T ss_conf 882899966888904516799999----9959999589998975688975893696898737667259997998556537 Q ss_pred CHHHHHHH-----CCCCEECCHHHHHHHHHHHHHCCCCC-CCCEEEECCCCEEEECC-EEEEEEECCCCCCCCCEEEEEE Q ss_conf 07888986-----29977929999999999998548865-56225517555577634-8999985567777653567987 Q gi|254780869|r 83 ALHDLWSF-----LHVPVYASPFAIGLLEAKRVYERVSK-KIPCISFQAGDKVDVGA-FSIESVRVNHSIPETMALVIRS 155 (559) Q Consensus 83 alp~l~~~-----~~~pIY~s~~t~~li~~~~~~~~~~~-~~~~~~i~~~~~~~~g~-~~v~~~~~~Hsip~a~~~~I~t 155 (559) ||||||+. +++|||||++|++|++.++.+++... .....++++++.+++|+ |+|+||+++||||||+|++|+| T Consensus 90 alp~Ll~~~~~~~~~~PIY~T~~T~~Ll~~kl~e~~~~~~~~~~~~i~~~~~~~~g~~f~v~~~~v~hsipga~~~~i~t 169 (562) T 3bk2_A 90 GLPFLLPMIFGKESPVPIYGARLTLGLLRGKLEEFGLRPGAFNLKEISPDDRIQVGRYFTLDLFRMTHSIPDNSGVVIRT 169 (562) T ss_dssp THHHHHHHHHCSCCCSEEEEEHHHHHHHHHHHHHTTCCSTTSEEEEECTTCEEEETTTEEEEEEECCCSSSSCEEEEEEE T ss_pred CHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEEEEEEEECCCCCCCCEEEEEEE T ss_conf 72878875214568858887999999999999972998555531473699659982118999885367777646999982 Q ss_pred CCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHH Q ss_conf 68179983340246776654238988998608788299996356457888777787999999999862798399994147 Q gi|254780869|r 156 PVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSS 235 (559) Q Consensus 156 ~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fas 235 (559) |+|+|+||||||+|.+|..++++|+.++++++++++++|++||||+.++++++||+++.+.+.+++.+++||++++|||| T Consensus 170 ~~g~IlyTGDfr~~~~~~~~~~~d~~~~~~~~~~~vl~l~~~st~~~~~~~~~~E~~~~~~i~~~~~~~~grvii~~fas 249 (562) T 3bk2_A 170 PIGTIVHTGDFKLDPTPIDGKVSHLAKVAQAGAEGVLLLIADATNAERPGYTPSEMEIAKELDRVIGRAPGRVFVTTFAS 249 (562) T ss_dssp TTEEEEECCSCCCCSSCTTSCCCCCHHHHHHHHHCCSEEEEECTTTTCCSCCCCHHHHHHHHHHHHHHCSSCEEEECCTT T ss_pred CCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 99789998255577777655656889985227778539976878889899997889999999999985799899997040 Q ss_pred HHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCC Q ss_conf 78999999999987188699844869999998874287677654226566223880208999966963268898852027 Q gi|254780869|r 236 SVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRG 315 (559) Q Consensus 236 ni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~~~~~~i~~~~~~~~p~~~~~ii~TGsqge~~a~l~ria~~ 315 (559) |++|+|+++++|+++||+++++||+|.+++.++.+.+|++.+...+..+...+++++++++++||+|||++++|+|++++ T Consensus 250 ni~Riq~i~~~a~~~~r~v~~~g~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~ii~tg~q~e~~~~l~ria~~ 329 (562) T 3bk2_A 250 HIHRIQSVIWAAEKYGRKVAMEGRSMLKFSRIALELGYLKVKDRLYTLEEVKDLPDHQVLILATGSQGQPMSVLHRLAFE 329 (562) T ss_dssp CHHHHHHHHHHHHHTTCEEEEECHHHHHHHHHHHHTTSCCCSSCCBCTGGGTTSCGGGEEEEECCTTSCSHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCCCCCCCCEECCHHHHCCCCCCCEEECCCCCCCHHHHHHHHHCC T ss_conf 58899999999998498898505118889999997187657753122054310560111031235546667788766416 Q ss_pred CCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCH Q ss_conf 77653026896699996158861778999997651031134303566641315788978999999754953999704577 Q gi|254780869|r 316 EMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEP 395 (559) Q Consensus 316 ~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~ 395 (559) .|+.+++.++|+|||||+++||||....++.|++.+.++++++.. ...+|+||||+++||++|++++|||++||||||| T Consensus 330 ~~~~~~~~~~d~vI~ss~~ipg~e~~~~~~~~~l~~~~~~vi~~~-~~~ih~SGHA~~edLk~~i~~lkPk~vIPVHGE~ 408 (562) T 3bk2_A 330 GHAKMAIKPGDTVILSSSPIPGNEEAVNRVINRLYALGAYVLYPP-TYKVHASGHASQEELKLILNLTTPRFFLPWHGEV 408 (562) T ss_dssp CCSSCCCCTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECTT-TSSSCCCSSCCHHHHHHHHHHHCCSEEEEESBCH T ss_pred CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEECC-CCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCHH T ss_conf 643241289998999830267621479999999997287045314-3354045889999999999863988777855529 Q ss_pred HHHHHHHHHHHHCCC--CCEEEECCCEEEEECCCCEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEEE Q ss_conf 999999987874478--631550032278973897045012321320212331002550588999974038749999998 Q gi|254780869|r 396 LHLVAHKELALQEGI--ACVPPVRNGKMLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLL 473 (559) Q Consensus 396 rhl~~h~~la~~~gv--~~i~l~~NGd~i~l~~~~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vii 473 (559) |||.+|+++|+++|+ +++++++|||+++|.++.+++.+++++|++|+||++++++++.+|+||++||+||+|+|++++ T Consensus 409 ~~l~~~~~la~~~g~~~~~~~i~~nG~~~~~~~~~~~~~~~~~~~~~~vdg~~~~~~~~~vl~~R~~l~~~G~~~v~~~~ 488 (562) T 3bk2_A 409 RHQMNFKWLAESMSRPPEKTLIGENGAVYRLTRETFEKVGEVPHGVLYVDGLGVGDITEEILADRRHMAEEGLVVITALA 488 (562) T ss_dssp HHHHHHHHHHHTSSSCCSEECCCCTTEEEEECSSCEEEEEECCCCEEEEETTEEEEECHHHHHHHHHHHHHCEEEEEEEE T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCCCCEEECEEEECCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEEE T ss_conf 99999999999819987644880498699954888668154400898994985346767589999999719849999998 Q ss_pred CCCCCEEECCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 38998800537999401212566588999999999999985220036898999999999999999998288867899999 Q gi|254780869|r 474 DNHYNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISSALRSLLKKVWGKKPLVTVFIN 553 (559) Q Consensus 474 d~~~~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~ir~~irk~~~k~~~KkP~V~v~I~ 553 (559) |+++. |++.++|++ .+++.+.+++++.+.+.+.+..+. .++++.+++.+|+.+|++++++|+|||+|+|+|+ T Consensus 489 ~~~~~----~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~k~P~v~~~i~ 560 (562) T 3bk2_A 489 GEDPV----VEVVSRGFV---KAGERLLGEVRRMALEALKNGVRE-KKPLERIRDDIYYPVKKFLKKATGRDPMILPVVI 560 (562) T ss_dssp SSSCE----EEEEEESCC---HHHHTSHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHSCCCEEEEEEE T ss_pred CCCCC----EEEEEECCC---CCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 89993----489931565---761889999999999999864313-6619999999999999999999789987999995 Q ss_pred E Q ss_conf 9 Q gi|254780869|r 554 K 554 (559) Q Consensus 554 r 554 (559) + T Consensus 561 e 561 (562) T 3bk2_A 561 E 561 (562) T ss_dssp E T ss_pred C T ss_conf 3 No 2 >2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP: d.157.1.10 Probab=100.00 E-value=0 Score=476.68 Aligned_cols=386 Identities=23% Similarity=0.277 Sum_probs=291.3 Q ss_pred CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCC-CCCCE---------------EEECCCHHH----H Q ss_conf 886399994068683466069999517778648999776767888-76750---------------287079579----8 Q gi|254780869|r 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKD-DLPGV---------------DLVFPDITF----I 61 (559) Q Consensus 2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~-~~~gi---------------d~iiPd~~~----l 61 (559) .+.++++..+||++|||+||+++++ +++.||+|||+.|... ..|+. +++.|++.+ + T Consensus 3 ~~~~~~i~f~GG~~eiGg~~~~i~~----~~~~illD~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 78 (429) T 2az4_A 3 SKAKTTVTFHSGILTIGGTVIEVAY----KDAHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDLYDPRLGYEYHGA 78 (429) T ss_dssp --CCEEEEEEECTTSSSCCEEEEEE----TTEEEEECCCCCCCTTCCCSCCCHHHHHHTTSSCCCSSCBCGGGCCCCCSS T ss_pred CCCCEEEEEECCCCCCCCCEEEEEE----CCEEEEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 8884699992799855883899999----990899947999776556754110001112346654333355421110012 Q ss_pred HHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCC---------CCCCEEEECCCCEEEEC Q ss_conf 766412468996054301216078889862997792999999999999854886---------55622551755557763 Q gi|254780869|r 62 MKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVS---------KKIPCISFQAGDKVDVG 132 (559) Q Consensus 62 ~~~~~~i~~i~iTH~H~DHiGalp~l~~~~~~pIY~s~~t~~li~~~~~~~~~~---------~~~~~~~i~~~~~~~~g 132 (559) .++..+++||||||+|.||+|++|+|++ ++|||+++.|+.++.......... ...++..++.++++++| T Consensus 79 ~~~~~~i~ai~iTH~H~DH~g~l~~l~~--~~piy~~~~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 156 (429) T 2az4_A 79 EDKDYQHTAVFLSHAHLDHSRMINYLDP--AVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVG 156 (429) T ss_dssp CCCCCSEEEEECSCSCHHHHTTGGGBCT--TSCEEEEHHHHHHHHHHTTTSCSSCCCTTSCTTCCCCCEEECTTCEEEET T ss_pred CCCCCCCCEEEECCCHHHHHCCHHHHHH--CCCEEECHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEECCCCEEEEC T ss_conf 2465666589989871726585256761--69765279999999998764000123402221554315995899969977 Q ss_pred CEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCC------- Q ss_conf 4899998556777765356798768179983340246776654238988998608788299996356457888------- Q gi|254780869|r 133 AFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREG------- 205 (559) Q Consensus 133 ~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~------- 205 (559) +|+|++|+++||||||+||.|++++++|+||||||++.... .....+.+.. +++|+|++|||++..+. T Consensus 157 ~~~v~~~~~~Hsi~gs~~~~i~~~~~~i~ytGD~~~~~~~~----~~~~~~~~~~-~~~d~Li~E~T~~~~~~~~~~~~~ 231 (429) T 2az4_A 157 EISVEIVPVDHDAYGASALLIRTPDHFITYTGDLRLHGHNR----EETLAFCEKA-KHTELLMMEGVSISFPEREPDPAQ 231 (429) T ss_dssp TEEEEEEECCCSSTTCEEEEEEETTEEEEECCSCCSSSTTH----HHHHHHHHHH-TTCSEEEEECCGGGSCCCCCCTTB T ss_pred CEEEEEEECCCCCCCCEEEEEECCCCEEEECCCEEECCCCC----CCHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCC T ss_conf 77999985667888754899824674588546513158876----4115566662-140233010221024665677555 Q ss_pred -CCCCHHHHHHHHHHHHH-HCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHH-HCCCCC-CCCCCC Q ss_conf -77778799999999986-27983999941477899999999998718869984486999999887-428767-765422 Q gi|254780869|r 206 -TCISEKGIKKNIYDIMK-NAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAI-DVGIIK-KDQLFL 281 (559) Q Consensus 206 -~~~sE~~v~~~i~~~~~-~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~-~~g~l~-~~~~~i 281 (559) ...+|.++.+.+.+++. +.+++|++++||+|++|+|+|+ .+++|++++.++.+....+... ...++. ....+. T Consensus 232 ~~~~se~~v~~~i~~~~~~~~~~~Vii~~~a~~~~ri~~I~---~~~~r~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (429) T 2az4_A 232 IAVVSEEDLVQHLVRLELENPNRQITFNGYPANVERFAKII---EKSPRTVVLEANMAALLLEVFGIEVRYYYAESGKIP 308 (429) T ss_dssp CCCCSHHHHHHHHHHHHHTCSSSCEEEEECTTCHHHHHHHH---HHCSSEEEEEHHHHHHHHHHHCCCCEEECSSSSCCT T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH---HHCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 65542899999999999856666154231130199999999---985984999788999999999875364247734444 Q ss_pred CHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHH-HHHHHHHHHHCCCEEEEECC Q ss_conf 65662238802089999669632688988520277765302689669999615886177-89999976510311343035 Q gi|254780869|r 282 SDESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEV-AIGHIKNRLVEQGVRVIAED 360 (559) Q Consensus 282 ~~~~~~~~p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~-~~~~~~n~l~~~g~~vi~~~ 360 (559) ..++...++.+++++..+|.+++..+.+. .+.+++++|+|++.++|++. ......+++.+.++++. T Consensus 309 ~~~~~~~v~~~~v~~~~~~~~~~~~~~~~----------~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 375 (429) T 2az4_A 309 ELNPALEIPYDTLLKDKTDYLWQVVNQFD----------NLQEGSLYIHSDAQPLGDFDPQYRVFLDLLAKKDITFV--- 375 (429) T ss_dssp TSCGGGBCCHHHHHHCSSSEEEECCSCGG----------GSCTTCEEEEESCSSCSTTSHHHHHHHHHHHHTTCEEE--- T ss_pred CHHHHHHCCHHHEEECCCCCHHHHHHHHH----------CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEE--- T ss_conf 45767658985788725421465888873----------35789889996787889800889999999974896799--- Q ss_pred CCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCEEEEE Q ss_conf 6664131578897899999975495399970457799999998787447863155003227897 Q gi|254780869|r 361 AECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIACVPPVRNGKMLRL 424 (559) Q Consensus 361 ~~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~rhl~~h~~la~~~gv~~i~l~~NGd~i~l 424 (559) .+|+||||+++||+.|++.++||++||||||++.. + .....++.+++||+.++| T Consensus 376 ---~~~~SgHA~~~eL~~~i~~l~Pk~vipvHg~~~e~-----~--~~~~~~~~ip~~Ge~i~l 429 (429) T 2az4_A 376 ---RLACSGHAIPEDLDKIIALIEPQVLVPIHTLKPEK-----L--ENPYGERILPERGEQIVL 429 (429) T ss_dssp ---ECCCCSSCCHHHHHHHHHHHCCSEEEEESCSCGGG-----C--CCTTSEECCCCTTCEEEC T ss_pred ---EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCHHH-----H--HCCCCCEEECCCCCEEEC T ss_conf ---88840798999999999973989999958985877-----4--185687898699999979 No 3 >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Probab=100.00 E-value=0 Score=451.35 Aligned_cols=397 Identities=22% Similarity=0.309 Sum_probs=277.8 Q ss_pred CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCC---CEEEECCCHHHHHHHHHCCCEEEEECCCC Q ss_conf 886399994068683466069999517778648999776767888767---50287079579876641246899605430 Q gi|254780869|r 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLP---GVDLVFPDITFIMKERKNLMAIFITHAHE 78 (559) Q Consensus 2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~---gid~iiPd~~~l~~~~~~i~~i~iTH~H~ 78 (559) +++.++++||||++|||+||+++++ ++++||+|||+.|+....+ +.++.+|+++|+.+. ++++||||||||+ T Consensus 185 ~~~~vrit~LGG~~EIGrs~~lv~~----~~~~ILlDcG~~~~~~~~~~~~~p~~~~p~~~~l~~~-~~idAVlITHaH~ 259 (651) T 3af5_A 185 KSRWIRITGLGGFREVGRSALLVQT----DESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLRE-GLLDAIIITHAHL 259 (651) T ss_dssp CCSCEEEEEEECSSSSSCCEEEEEE----SSCEEEECCCCCGGGTTCHHHHSCCTTCHHHHHHHHT-TCCCEEECSCSSH T ss_pred CCCCEEEEEECCCCCCCCCEEEEEE----CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEECCCCH T ss_conf 9982799993688862466799996----7968999899885656673113677677652123675-6556899788987 Q ss_pred CCCCCHHHHHHH--CCCCEECCHHHHHHHHHHHHHC-------CCCCC----------CCEEEECCCCEEEEC-CEEEEE Q ss_conf 121607888986--2997792999999999999854-------88655----------622551755557763-489999 Q gi|254780869|r 79 DHYGALHDLWSF--LHVPVYASPFAIGLLEAKRVYE-------RVSKK----------IPCISFQAGDKVDVG-AFSIES 138 (559) Q Consensus 79 DHiGalp~l~~~--~~~pIY~s~~t~~li~~~~~~~-------~~~~~----------~~~~~i~~~~~~~~g-~~~v~~ 138 (559) ||+|+||||+++ +++|||+|++|..++...+.+. +..+. ..+.+++.+++++++ +|+++| T Consensus 260 DHiG~LP~L~~~g~~~~PIY~T~~T~~L~~~~~~d~~~i~~~~~~~~~y~~~di~~~~~~~~~l~yge~~~i~pd~~it~ 339 (651) T 3af5_A 260 DHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTL 339 (651) T ss_dssp HHHTTHHHHHHTTCCCSCEEECHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTEEECCTTCCEEEETTEEEEE T ss_pred HHHCCHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEECCCCEEEECCCEEEEE T ss_conf 88686889997378888776678999999999999999876116777789999999985419957998498079879986 Q ss_pred EECCCCCCCCCEEEEEECC--CEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHH Q ss_conf 8556777765356798768--17998334024677665423898899860878829999635645788877778799999 Q gi|254780869|r 139 VRVNHSIPETMALVIRSPV--GNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKN 216 (559) Q Consensus 139 ~~~~Hsip~a~~~~I~t~~--g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~ 216 (559) ++++|+ +|++++.|+.++ ++|+|||||+++.++....... .-..++.|++|||++......+++.+.++. T Consensus 340 ~~aGH~-lGsa~~~i~i~~~~~~IvyTGDfk~~~~~ll~~a~~-------~~~rvd~Li~EsTyg~~~~~~~~r~~~e~~ 411 (651) T 3af5_A 340 HNAGHI-LGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANA-------KFPRLETLVMESTYGGANDIQMPREEAEKR 411 (651) T ss_dssp EECSSS-TTCEEEEEEETTTTTCEEECCSCCCSCCSSCCCCCC-------BCSSCSEEEEECTTCSTTCCCCCHHHHHHH T ss_pred CCCCCC-CCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCC-------CHHHHCCEEEEEECCCCCCCCCCHHHHHHH T ss_conf 568988-703089999568866899777878887756687654-------512304002332026777733333579999 Q ss_pred HHHHHHH---CCCCEEEEECHHHHHHHHHHHHHHHHHCCE------EEEECHHHHHHHHHHHH-CCCC----------CC Q ss_conf 9999862---798399994147789999999999871886------99844869999998874-2876----------77 Q gi|254780869|r 217 IYDIMKN---AKGCVLVTTFSSSVSRIRSIIDIAEQIGRK------IVLLGSSLKRVVSVAID-VGII----------KK 276 (559) Q Consensus 217 i~~~~~~---~~grViv~~fasni~Ri~~i~~~a~~~~R~------v~i~Grs~~~~~~~a~~-~g~l----------~~ 276 (559) +.+.+.. ..|+|++++|| ++|+|+++.++.++.|+ +++.|...... .+... ..|+ .. T Consensus 412 L~~~I~~tl~~gG~VlIp~fa--vgR~QEI~~~l~~~~r~~~~~~pi~~~g~i~~~~-~i~~~~~e~~~~~lr~~~~~~~ 488 (651) T 3af5_A 412 LIEVIHNTIKRGGKVLIPAMA--VGRAQEVMMVLEEYARIGGIEVPIYLDGMIWEAT-AIHTAYPEYLSRRLREQIFKEG 488 (651) T ss_dssp HHHHHHHHHHTTCEEEEECCT--TTHHHHHHHHHHHHHTTTCCCSCEEEESSHHHHH-HHHHTCGGGSCHHHHHHTTTSS T ss_pred HHHHHHHHHHCCCEEEEEECC--CHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH-HHHHHCHHHHHHHHHHHHHHCC T ss_conf 999999998559869999515--0789999999999987468775088615889999-9999666766589999986355 Q ss_pred CCCC--------CCHHH---HCCCCCCCEEEEEECCC---CCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHH- Q ss_conf 6542--------26566---22388020899996696---326889885202777653026896699996158861778- Q gi|254780869|r 277 DQLF--------LSDES---FGLYPREQLIVIATGSQ---GEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVA- 341 (559) Q Consensus 277 ~~~~--------i~~~~---~~~~p~~~~~ii~TGsq---ge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~- 341 (559) .+.+ ....+ +.. ..+..++++|..+ |.....+. .+...++|++||++..+||+... T Consensus 489 ~npf~~~~~~~~~~~~~~~~i~~-~~~p~iilas~gml~~G~~~~~~~--------~l~~d~~n~IIfsgy~~~Gt~gr~ 559 (651) T 3af5_A 489 YNPFLSEIFHPVANSRERQDIID-SNEPAIIIASSGMLVGGPSVEYFK--------QLAPDPKNSIIFVSYQAEGTLGRQ 559 (651) T ss_dssp CCSTTCTTEEECCSHHHHHHHHH-SCSCEEEEESCTTSSSSHHHHHHH--------HHTTCTTCEEEECSCCCTTCHHHH T ss_pred CCCCCCCCCEECCCHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHH--------HHCCCCCCEEEEECCCCCCCHHHH T ss_conf 68543300230477888998870-699779990661113677999999--------955999898999888789977787 Q ss_pred HHHHHH---HHHCCCEEEEECCCCCCEEC----CCCCCHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHH-HHHHCCCC Q ss_conf 999997---65103113430356664131----5788978999999754--95399970457799999998-78744786 Q gi|254780869|r 342 IGHIKN---RLVEQGVRVIAEDAECPVHV----SGHPYPNDLKRMYQWI--RPQVLVAIHGEPLHLVAHKE-LALQEGIA 411 (559) Q Consensus 342 ~~~~~n---~l~~~g~~vi~~~~~~~iH~----SGHa~~edl~~li~~i--kPk~~IPvHGe~rhl~~h~~-la~~~gv~ 411 (559) +..... .+.+.|..... .....+|+ ||||+++||+.|++.+ ||+++||||||++++.++++ ++++.|+ T Consensus 560 l~~~~~~i~~~~~~g~~~~v-~v~~~V~~~~~fSGHad~~eL~~~i~~v~PkP~~VIpvHGE~~~~~~la~~l~~~~~i- 637 (651) T 3af5_A 560 VQSGIREIPMVGEEGRTEVI-KVNMEVHTIDGFSGHADRRELMNYVAKVRPRPERIITVHGEPQKCLDLATSIHRKFGI- 637 (651) T ss_dssp HHHTCSEEEEECGGGCEEEE-ECCSEEEECGGGCSSCCHHHHHHHHHHCBSCCSEEEEESSCHHHHHHHHHHHHHHHCC- T ss_pred HHHHHHHHHHHHHCCCCEEE-EEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCC- T ss_conf 76443355588761775488-7324798778827895999999999975157999999789999999999999998499- Q ss_pred CEEEECCCEEEEEC Q ss_conf 31550032278973 Q gi|254780869|r 412 CVPPVRNGKMLRLF 425 (559) Q Consensus 412 ~i~l~~NGd~i~l~ 425 (559) ++++++||+.++|. T Consensus 638 ~~~~P~nge~i~lk 651 (651) T 3af5_A 638 STRAPNNLDTIRLR 651 (651) T ss_dssp EEECCCTTCEEECC T ss_pred EEEECCCCCEEEEC T ss_conf 08878999889829 No 4 >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Probab=100.00 E-value=0 Score=440.10 Aligned_cols=391 Identities=19% Similarity=0.294 Sum_probs=277.6 Q ss_pred CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCC Q ss_conf 88639999406868346606999951777864899977676788876750287079579876641246899605430121 Q gi|254780869|r 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHY 81 (559) Q Consensus 2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHi 81 (559) +++.++|+||||++|||+||+++++ ++.+||+|||++++.++.++.+..+|++.++ ++++||||||+|+||+ T Consensus 180 ~~~~irit~LGG~~EIGrsc~lv~~----~~~~ILlDcG~~~~~~~~~~~~~~~p~~~~l----~~iDAV~LTHaH~DH~ 251 (640) T 2xr1_A 180 KDQWVRVTALGGCKEVGRSCFLLST----PESRILIDCGVNVGSDENMTPYLYVPEVFPL----NQIDAVIVTHAHLDHQ 251 (640) T ss_dssp SCCCCEEEEEECSSSSBCCEEEEEC----SSCEEEECCCCBCSSCSSCCCCTTSTTTCSG----GGCCEEECCSSCHHHH T ss_pred CCCEEEEEEECCCCCCCCCEEEEEE----CCCEEEEECCCCCCCCCCCCCCCCCCCCCCH----HHCCEEEECCCCHHHH T ss_conf 9980899994788861527799996----8969999888887852335744355776873----0188999888976763 Q ss_pred CCHHHHHHH-CCCCEECCHHHHHHHHHHHHHC-------CCCCC----------CCEEEECCCCEEEEC-CEEEEEEECC Q ss_conf 607888986-2997792999999999999854-------88655----------622551755557763-4899998556 Q gi|254780869|r 82 GALHDLWSF-LHVPVYASPFAIGLLEAKRVYE-------RVSKK----------IPCISFQAGDKVDVG-AFSIESVRVN 142 (559) Q Consensus 82 Galp~l~~~-~~~pIY~s~~t~~li~~~~~~~-------~~~~~----------~~~~~i~~~~~~~~g-~~~v~~~~~~ 142 (559) |+||||++. +++|||+|+.|+.|++..+.+. ..... ..+++++.+++++++ +|+|+|++++ T Consensus 252 G~Lp~L~k~g~~~PIY~T~~T~~L~~~ll~d~~~~~~~~~~~~~y~~~~i~~~~~~~i~l~y~e~~~i~~di~Vt~~~aG 331 (640) T 2xr1_A 252 GLVPLLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAG 331 (640) T ss_dssp TTHHHHHHTTCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEECS T ss_pred CCHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCEEEECCCCEEEEEECC T ss_conf 86599985289988997779999999999999987664234688788999988850685589976995797179997268 Q ss_pred CCCCCCCEE-EEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCC----HHHHHHHH Q ss_conf 777765356-7987681799833402467766542389889986087882999963564578887777----87999999 Q gi|254780869|r 143 HSIPETMAL-VIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCIS----EKGIKKNI 217 (559) Q Consensus 143 Hsip~a~~~-~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~s----E~~v~~~i 217 (559) ||+++|+++ .|+++.++|+|||||+++..+..+...+ ....++.|++|+|+.......++ |..+.+.+ T Consensus 332 HslGsA~~~~~I~~g~~~IvyTGDfr~~~~~~l~~a~~-------~~~~~d~lIlesTyg~~~~~~~~~~~~e~~l~~~I 404 (640) T 2xr1_A 332 HILGSAISHFHIGDGLHNVVFTGDYKYEKTRLFDPAVN-------KFPRVETVISEATYGNANAFQPALKDAEKHLQMVV 404 (640) T ss_dssp SSTTCEEEEEEETTTTEEEEECCSCCSSCCSSCCCCCC-------BCSCCSEEEEECTTCSTTCCCCCHHHHHHHHHHHC T ss_pred CCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCC-------CHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 77865005789950882699737856676755586543-------01221222100123567767765110899999999 Q ss_pred HHHHHHCCCCEEEEECHHHHHHHHHHHHHHH---HHCC----EEEEECHHHHHHHHHHHHCCCCCCC----------CCC Q ss_conf 9998627983999941477899999999998---7188----6998448699999988742876776----------542 Q gi|254780869|r 218 YDIMKNAKGCVLVTTFSSSVSRIRSIIDIAE---QIGR----KIVLLGSSLKRVVSVAIDVGIIKKD----------QLF 280 (559) Q Consensus 218 ~~~~~~~~grViv~~fasni~Ri~~i~~~a~---~~~R----~v~i~Grs~~~~~~~a~~~g~l~~~----------~~~ 280 (559) .+++++ .|+|++++|+ +.|.|+++.++. +.++ .+++.|..+..........+|++.. +.+ T Consensus 405 ~~tl~~-gg~VlIp~~a--~gR~qEI~~~l~~~~~~g~~~~~~v~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~npf 481 (640) T 2xr1_A 405 KNTIER-GGIAVIPAFA--VGRSQEVMIVLEESIRKGLIPEVPVYLDGMIWEATAIHATHPEYLNNDLRKLIFQKGQNPF 481 (640) T ss_dssp ---------CEEEECCT--TTHHHHHHHHHHHHHHHTSSCCCCEEEESSHHHHHHHHHHCGGGSCHHHHHHC------CT T ss_pred HHHHHH-CCCEEEEEEC--HHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC T ss_conf 999982-9978998632--0369999999999997089877459993146788999996454339799998764344864 Q ss_pred -----------CCHHHHCCCCCCCEEEEEECCC---CCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH Q ss_conf -----------2656622388020899996696---32688988520277765302689669999615886177899999 Q gi|254780869|r 281 -----------LSDESFGLYPREQLIVIATGSQ---GEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIK 346 (559) Q Consensus 281 -----------i~~~~~~~~p~~~~~ii~TGsq---ge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~ 346 (559) ...+.+... .+..++++|..+ |.....+.+++ -.+.+++||++..+||+.- .++. T Consensus 482 ~~~~~~~~~~~~~~~~i~~~-~~p~vilatsgml~~G~~~~~~~~l~--------~d~~n~vIftgy~a~gT~g--r~l~ 550 (640) T 2xr1_A 482 LSECFKPVDSHEARQKIIQN-PQPCVILATSGMMNGGPVMEYFKAFA--------EDPRNTLVFVGYQADGTIG--RRIQ 550 (640) T ss_dssp TCTTEEEEC-CHHHHHC-----CCCEEEESCTTSSSSHHHHHHHHHS--------SCTTCEEEECSCCCTTCHH--HHHH T ss_pred CCCCCEECCCHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHC--------CCCCCEEEEECCCCCCCHH--HHHH T ss_conf 33330314877879999747-89859995563345736999999954--------9999989997787899767--7512 Q ss_pred HHH------HCCCE-EEEECCCCCCE----ECCCCCCHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHH-HHHHCCCCC Q ss_conf 765------10311-34303566641----315788978999999754--95399970457799999998-787447863 Q gi|254780869|r 347 NRL------VEQGV-RVIAEDAECPV----HVSGHPYPNDLKRMYQWI--RPQVLVAIHGEPLHLVAHKE-LALQEGIAC 412 (559) Q Consensus 347 n~l------~~~g~-~vi~~~~~~~i----H~SGHa~~edl~~li~~i--kPk~~IPvHGe~rhl~~h~~-la~~~gv~~ 412 (559) +.. .+.+. +.+. ....+ |.||||+++||+.|++.+ ||+++||||||++++...++ +.++.|+ + T Consensus 551 ~g~~~i~~~~~~~~~~~i~--v~~~V~~~~~fSGHAd~~eL~~~i~~v~prPk~VipvHGe~~~~~~la~~l~~~~~i-~ 627 (640) T 2xr1_A 551 KGWKEIPMTGKNGSTEMLK--MNMEVQVVDGFSGHSDRRQLMEYVKRMQPRPERVFTEHGDEKACVDLASSVYKKLKI-E 627 (640) T ss_dssp TTCCC-----------CCC--CCSEEEECCCCSCSCCHHHHHHHHHTCBSCCSEEEEESSCHHHHHHHHHHHHHHHCC-E T ss_pred CCCCEEHHHHHCCCCEEEE--EEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCC-C T ss_conf 2442402676447742686--457898688617997999999999966136999999839989999999999998599-6 Q ss_pred EEEECCCEEEEE Q ss_conf 155003227897 Q gi|254780869|r 413 VPPVRNGKMLRL 424 (559) Q Consensus 413 i~l~~NGd~i~l 424 (559) +.+++|||.++| T Consensus 628 ~~~p~nge~i~l 639 (640) T 2xr1_A 628 TRALTNLETVRL 639 (640) T ss_dssp EEECCTTCEEEC T ss_pred EEECCCCCEEEE T ss_conf 888899998984 No 5 >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Probab=100.00 E-value=0 Score=438.65 Aligned_cols=398 Identities=17% Similarity=0.203 Sum_probs=267.7 Q ss_pred CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCC Q ss_conf 88639999406868346606999951777864899977676788876750287079579876641246899605430121 Q gi|254780869|r 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHY 81 (559) Q Consensus 2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHi 81 (559) ++++++|+||||.+|||+||+++++ ++.+||+|||+.+..+.. + ..|+++++. .++|+||||||+|.||+ T Consensus 8 ~~~~~~i~~LGG~~eiG~sc~lv~~----~~~~illDcG~~~~~~~~---~-~~p~~~~~~--~~~idai~lTH~H~DH~ 77 (459) T 2i7t_A 8 ESDQLLIRPLGAGQEVGRSCIILEF----KGRKIMLDCGIHPGLEGM---D-ALPYIDLID--PAEIDLLLISHFHLDHC 77 (459) T ss_dssp -CEEEEEEEEESSSSSSSCEEEEEE----TTEEEEECCCCCTTSCGG---G-GSCCGGGSC--GGGCCEEECCCSSHHHH T ss_pred CCCEEEEEECCCCCCCCCCEEEEEE----CCEEEEEECCCCCCCCCC---C-CCCCCCCCC--CCCCCEEEECCCHHHHH T ss_conf 9984999982689864568999998----992999958899886520---0-267766678--22299999897858876 Q ss_pred CCHHHHHHHC--CCCEECCHHHHHHHHHHHHHCCCCCC-----------------CCEEEECCCCEEEECCEEEEEEECC Q ss_conf 6078889862--99779299999999999985488655-----------------6225517555577634899998556 Q gi|254780869|r 82 GALHDLWSFL--HVPVYASPFAIGLLEAKRVYERVSKK-----------------IPCISFQAGDKVDVGAFSIESVRVN 142 (559) Q Consensus 82 Galp~l~~~~--~~pIY~s~~t~~li~~~~~~~~~~~~-----------------~~~~~i~~~~~~~~g~~~v~~~~~~ 142 (559) ||||||+.+. +.|||+|++|.++++..+........ ..+..++.+++..+++++|++++++ T Consensus 78 g~Lp~l~~~~~~~~piy~t~~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ag 157 (459) T 2i7t_A 78 GALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAG 157 (459) T ss_dssp TTHHHHHHHSSCCSEEEEEHHHHHHHHHHHHHHCC---------CCCHHHHHHHGGGEEEECTTCCEEETTEEEEEEECC T ss_pred CCHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCEEEECCCCEEEECCEEEEEEECC T ss_conf 92799998648999888315279999988898775410343235677999997762458707995686087599998447 Q ss_pred CCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCC--HHHHHHHHHHH Q ss_conf 7777653567987681799833402467766542389889986087882999963564578887777--87999999999 Q gi|254780869|r 143 HSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCIS--EKGIKKNIYDI 220 (559) Q Consensus 143 Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~s--E~~v~~~i~~~ 220 (559) | +||++++.|++++++|+|||||+++.++..... .....++|+|++|||++.....+.+ |..+.+.+.+. T Consensus 158 H-~~g~~~~~i~~~~~~i~ytGD~~~~~~~~l~~~-------~~~~~~~D~Li~est~~~~~~~~~~~~~~~l~~~i~~~ 229 (459) T 2i7t_A 158 H-VLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAA-------EIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDI 229 (459) T ss_dssp S-STTCEEEEEEETTEEEEECCSCCCC-----CCC-------CCCSSCCSEEEEECTTTTCCCCCHHHHHHHHHHHHHHH T ss_pred C-CCCCEEEEEEECCEEEEECCCCCCCCCCCCCCC-------CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 7-678579999989998885588677786444565-------56776655899956777767897577999999999999 Q ss_pred HHHCCCCEEEEECHHHHHHHHHHHHHHHHH--------CCEEEEECHHHHHHHHHHHHC-CCCCC----------C---C Q ss_conf 862798399994147789999999999871--------886998448699999988742-87677----------6---5 Q gi|254780869|r 221 MKNAKGCVLVTTFSSSVSRIRSIIDIAEQI--------GRKIVLLGSSLKRVVSVAIDV-GIIKK----------D---Q 278 (559) Q Consensus 221 ~~~~~grViv~~fasni~Ri~~i~~~a~~~--------~R~v~i~Grs~~~~~~~a~~~-g~l~~----------~---~ 278 (559) +++ .|+|++++|+ +.|.|+++....+. +..+++.+....+........ .+++. + . T Consensus 230 ~~~-~g~vli~~~~--~gr~~eil~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (459) T 2i7t_A 230 VNR-GGRGLIPVFA--LGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFK 306 (459) T ss_dssp HHT-TCEEEEECCS--SSSHHHHHHHHHHHHHHCGGGTTSCEEEC---------------------------------CC T ss_pred HHC-CCCEEEEEEC--CCCHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCC T ss_conf 864-9927999504--4219999999999987452457752795326899999999874765589999875025763223 Q ss_pred CCCCHHHHCCCC-CCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHH-HHHHHHHCCCEEE Q ss_conf 422656622388-02089999669632688988520277765302689669999615886177899-9997651031134 Q gi|254780869|r 279 LFLSDESFGLYP-REQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIG-HIKNRLVEQGVRV 356 (559) Q Consensus 279 ~~i~~~~~~~~p-~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~-~~~n~l~~~g~~v 356 (559) .+...+.....+ .+..+++++. +...+..++ .-++.+...+.|+++|+++++||+....- ..-+...+...+. T Consensus 307 ~~~~~~~~~~~~~~~~~vi~~~~--~~l~~g~s~---~~~~~~~~~~~~~vi~sg~~~~g~~~~~l~~~~~~~~~~~~~~ 381 (459) T 2i7t_A 307 HISNLKSMDHFDDIGPSVVMASP--GMMQSGLSR---ELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQK 381 (459) T ss_dssp SEEECCCTTSSCCCSSEEEEESC--TTCSSHHHH---HHHHHHTTCTTCEEEECSCCCTTSHHHHHTTCCSEEECTTSCE T ss_pred CEEEECCHHHHCCCCCEEEEECC--CCCCCCHHH---HHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEEECCCE T ss_conf 20021124453156863999566--244762689---9998735788883997478578768887632662047625948 Q ss_pred EECCC-CCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH-CCCC-----CEEEECCCEEEEEC Q ss_conf 30356-6641315788978999999754953999704577999999987874-4786-----31550032278973 Q gi|254780869|r 357 IAEDA-ECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQ-EGIA-----CVPPVRNGKMLRLF 425 (559) Q Consensus 357 i~~~~-~~~iH~SGHa~~edl~~li~~ikPk~~IPvHGe~rhl~~h~~la~~-~gv~-----~i~l~~NGd~i~l~ 425 (559) +.... -..+|+||||+++||++|++.+|||++||||||++|+..+++.+.+ .... .+++++||+.++|. T Consensus 382 ~~~~~~v~~~~~SgHa~~~eL~~~i~~~~Pk~vipvHGe~~~~~~~~~~l~~~~~~~~~~~i~v~~p~nG~~v~l~ 457 (459) T 2i7t_A 382 LPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLN 457 (459) T ss_dssp EECCSEEEECCCSCCCCHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHHHSSCTTCCCEEECCCTTCCEEEE T ss_pred EEEEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEE T ss_conf 8866599997643899999999999851999899976998999999999998704045566079878999889972 No 6 >2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Probab=99.98 E-value=4.8e-30 Score=233.57 Aligned_cols=310 Identities=14% Similarity=0.168 Sum_probs=199.3 Q ss_pred ECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHH Q ss_conf 40686834660699995177786489997767678887675028707957987664124689960543012160788898 Q gi|254780869|r 10 PLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS 89 (559) Q Consensus 10 ~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~ 89 (559) +.+|.+ ..+|+++++ ++..||+|||....... + . -.+.++++....|++|||||+|.||+||||||++ T Consensus 8 ~~~g~~--~~~c~lL~~----d~~~ILlDcG~~~~~~~-~-~----~~~~~~~~~~~~IDaVllSHah~DH~GaLP~L~~ 75 (717) T 2i7x_A 8 CDDGSG--TTVGSVVRF----DNVTLLIDPGWNPSKVS-Y-E----QCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYY 75 (717) T ss_dssp CCSSSS--SCCCEEEEE----TTEEEEECCCCCTTTSC-H-H----HHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHH T ss_pred ECCCCC--CCEEEEEEE----CCEEEEEECCCCCCCCC-H-H----HHHHHHHCCCCCCCEEEECCCCHHHHCCHHHHHH T ss_conf 148997--303899998----99799998998877677-4-4----5002211265658789977898677546689998 Q ss_pred H------CCCCEECCHHHHHHHHHHHHHC----CCCC--C---C----------CEEEECCCCEEEE----CCEEEEEEE Q ss_conf 6------2997792999999999999854----8865--5---6----------2255175555776----348999985 Q gi|254780869|r 90 F------LHVPVYASPFAIGLLEAKRVYE----RVSK--K---I----------PCISFQAGDKVDV----GAFSIESVR 140 (559) Q Consensus 90 ~------~~~pIY~s~~t~~li~~~~~~~----~~~~--~---~----------~~~~i~~~~~~~~----g~~~v~~~~ 140 (559) . +++|||||+.|..|.+..+.+. .... + + .+.+++.++++.+ .+++|+|++ T Consensus 76 ~~~~~~g~~~pIYaT~pt~~L~~~~l~D~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~l~Y~q~~~l~~~~~gl~it~~~ 155 (717) T 2i7x_A 76 NFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYN 155 (717) T ss_dssp HSHHHHHHTCEEEEEHHHHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEE T ss_pred HCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEECCCCEEECCCCCCCEEEEEEE T ss_conf 51323698888996689999999999999997531165556678999999998504894799859803788857999965 Q ss_pred CCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHH-----HHHCCCCCCEEEEECCCCCCCCCCC--CCHHHH Q ss_conf 567777653567987681799833402467766542389889-----9860878829999635645788877--778799 Q gi|254780869|r 141 VNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDS-----LCAIGNEGILALMCDSTNAMREGTC--ISEKGI 213 (559) Q Consensus 141 ~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~-----l~~~~~~gv~~Li~esT~~~~~~~~--~sE~~v 213 (559) ++| ++|++++.|+.+.++|+|||||.....+..... ++.. +..+. ..++||+++++. ..... ..+..+ T Consensus 156 AGH-~LGsa~~~I~~~~~~IvytgD~n~~~~~~L~ga-~~~~~~~~~~~~l~--~~~~li~~t~~~-~~~~~~~~~~~~l 230 (717) T 2i7x_A 156 AGV-CPGGSIWCISTYSEKLVYAKRWNHTRDNILNAA-SILDATGKPLSTLM--RPSAIITTLDRF-GSSQPFKKRSKIF 230 (717) T ss_dssp CSS-STTCEEEEEECSSCEEEECSSCCSSCCSSCCCC-TTBCTTSCBCSTTS--SCSEEEECCSCC-CCSSCHHHHHHHH T ss_pred CCC-CCCCEEEEEEECCEEEEEECCCCCCCCCEECCC-CCCCCCCCCCCCCC--CCCEEEEECCCC-CCCCCHHHHHHHH T ss_conf 563-234269999829959999636788887300475-33455788643356--787899807788-8778869999999 Q ss_pred HHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHH-----------CCEEEEECHHHHHHHHHHHHC-CCC------- Q ss_conf 9999999862798399994147789999999999871-----------886998448699999988742-876------- Q gi|254780869|r 214 KKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQI-----------GRKIVLLGSSLKRVVSVAIDV-GII------- 274 (559) Q Consensus 214 ~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~-----------~R~v~i~Grs~~~~~~~a~~~-g~l------- 274 (559) .+.+.+++++ .|.|++++|+ ++|+|+++..-... .-+|++.+..-.+.+..++.. .++ T Consensus 231 ~~~I~~tl~~-gG~VLIP~fa--~GR~qELl~~L~~~~~~~~~~~~~~~~PIyl~S~~a~~~~~~a~s~~Ewm~~~i~k~ 307 (717) T 2i7x_A 231 KDTLKKGLSS-DGSVIIPVDM--SGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKT 307 (717) T ss_dssp HHHHHHHTST-TCEEEEEECT--TTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHHTCGGGSCHHHHHH T ss_pred HHHHHHHHHC-CCEEEEEECC--CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHCHHHHHH T ss_conf 9999999977-9989997268--628999999999999861442578872089987789999999999998747898888 Q ss_pred -------CCC-----CCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHH Q ss_conf -------776-----54226566223880208999966963268898852027776530268966999961588617789 Q gi|254780869|r 275 -------KKD-----QLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAI 342 (559) Q Consensus 275 -------~~~-----~~~i~~~~~~~~p~~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~ 342 (559) ++. ..+...+++...|. -.+|+||+..|..+..|.++|.+ +..+|||..+..|+. .+. T Consensus 308 fe~~~~~~pF~~~~~~~~~~~~el~~~~~-PkVVlas~~~G~s~~~l~~la~d--------~kN~VilT~~~~~~~-~~~ 377 (717) T 2i7x_A 308 WENRNNTSPFEIGSRIKIIAPNELSKYPG-SKICFVSEVGALINEVIIKVGNS--------EKTTLILTKPSFECA-SSL 377 (717) T ss_dssp HHSSSSCCTTCCTTTEEECCGGGGGGCCS-CEEEEEESCHHHHHHHHHHHSSC--------TTEEEEECSSCCTTC-HHH T ss_pred HHHHCCCCCCCCCEEEECCCHHHHHHCCC-CCEEEEECCCCCHHHHHHHHCCC--------CCCEEEEECCCCCCC-HHH T ss_conf 88645766534420421167988961789-84899808974099999997089--------986799946887752-156 Q ss_pred HHHHHHH Q ss_conf 9999765 Q gi|254780869|r 343 GHIKNRL 349 (559) Q Consensus 343 ~~~~n~l 349 (559) .++.++. T Consensus 378 ~~~~~~~ 384 (717) T 2i7x_A 378 DKILEIV 384 (717) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 7899987 No 7 >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein structure initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Probab=99.88 E-value=1.6e-21 Score=172.31 Aligned_cols=213 Identities=16% Similarity=0.284 Sum_probs=139.4 Q ss_pred CCCCEEEEEECCCCCCC-----CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHH--HHHCCCEEEE Q ss_conf 98863999940686834-----6606999951777864899977676788876750287079579876--6412468996 Q gi|254780869|r 1 MKNEELVFLPLGGVGEI-----GMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMK--ERKNLMAIFI 73 (559) Q Consensus 1 m~~~~i~~~~lGG~~ei-----G~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~--~~~~i~~i~i 73 (559) |+++++++..||..+.. +.||++++. +++.||||||-.... .|.+ ...+|++||| T Consensus 20 ~~~~~m~~~~lG~~~~~~~~~~~~S~~Li~~----~~~~iLiD~G~g~~~--------------~l~~~~~~~~id~I~i 81 (268) T 1zkp_A 20 FQSNAMKMTVVGFWGGFPEAGEATSGYLFEH----DGFRLLVDCGSGVLA--------------QLQKYITPSDIDAVVL 81 (268) T ss_dssp CCSSCEEEEEEECBSSSCCTTCCBSEEEEEE----TTEEEEECCCTTHHH--------------HHTTTCCGGGCCEEEC T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCEEEEEE----CCCEEEEECCHHHHH--------------HHHHCCCHHHCCEEEE T ss_conf 4689778999924899599999646799999----992899959767999--------------9985498524979999 Q ss_pred ECCCCCCCCCHHHHHHHC-----------CCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECC Q ss_conf 054301216078889862-----------997792999999999999854886556225517555577634899998556 Q gi|254780869|r 74 THAHEDHYGALHDLWSFL-----------HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVN 142 (559) Q Consensus 74 TH~H~DHiGalp~l~~~~-----------~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~ 142 (559) ||+|.||+|++|+|.... ..|||+.+++...+.. ..........++.++..+++|+++|+++++. T Consensus 82 TH~H~DH~~gl~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ig~~~v~~~~~~ 157 (268) T 1zkp_A 82 SHYHHDHVADIGVLQYARLITSATKGQLPELPIYGHTFDENGFHS----LTHEPHTKGIPYNPEETLQIGPFSISFLKTV 157 (268) T ss_dssp SCCCHHHHTTHHHHHHHHHHHHHHHCCCCCEEEEECSSSHHHHHT----TCBTTTEEEEECCTTSCEEETTEEEEEEECC T ss_pred ECCCHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHH----HHHHCCCCEEECCCCCEEEEEEEEEEEECCC T ss_conf 279603333448887654202333356774458833667889987----6542255337706875598412899740377 Q ss_pred CCCCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCC-HHHHHHHHHHHH Q ss_conf 7777653567987681799833402467766542389889986087882999963564578887777-879999999998 Q gi|254780869|r 143 HSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCIS-EKGIKKNIYDIM 221 (559) Q Consensus 143 Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~s-E~~v~~~i~~~~ 221 (559) |++ +++|+.|+.++++++||||-.. ..++..+. +++|+|++|+|.......... .....+ ..++. T Consensus 158 H~~-~~~g~~i~~~~~~i~ysgDt~~--------~~~~~~~~----~~~Dlli~e~~~~~~~~~~~~~H~~~~e-a~~l~ 223 (268) T 1zkp_A 158 HPV-TCFAMRITAGNDIVVYSADSSY--------IPEFIPFT----KDADLFICECNMYAHQEAAKAGHMNSTE-VASIA 223 (268) T ss_dssp SSS-CCEEEEEEETTEEEEECCSCCC--------CTTHHHHH----TTCSEEEEECCBCTTSCCGGGTCCBHHH-HHHHH T ss_pred CCC-CCCEEEEECCCCEEEECCCCCC--------CCHHHHHH----CCCCEEEEECCCCCCHHCCCCCCCCHHH-HHHHH T ss_conf 778-7413477427977998888998--------81466653----3576899977887300026666899999-99999 Q ss_pred HHCC-CCEEEEECHHHHHHHHHHHHHHHHH Q ss_conf 6279-8399994147789999999999871 Q gi|254780869|r 222 KNAK-GCVLVTTFSSSVSRIRSIIDIAEQI 250 (559) Q Consensus 222 ~~~~-grViv~~fasni~Ri~~i~~~a~~~ 250 (559) +..+ .+++++=|+. ..+-+.+.+.+++. T Consensus 224 ~~~~~k~lvl~H~~~-~~~~~~~~~~~~~~ 252 (268) T 1zkp_A 224 KDANVKELLLTHLPH-TGNPADLVTEAKQI 252 (268) T ss_dssp HHTTCSEEEEESBCS-SSCTHHHHHHHHTT T ss_pred HHCCCCEEEEECCCC-CCCHHHHHHHHHHH T ss_conf 981979899989798-79999999999986 No 8 >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Probab=99.83 E-value=2.3e-19 Score=156.77 Aligned_cols=325 Identities=14% Similarity=0.110 Sum_probs=182.4 Q ss_pred CCC--EEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH--HHCCCEEEEECCCCCCCCCHHHHHHHC- Q ss_conf 466--069999517778648999776767888767502870795798766--412468996054301216078889862- Q gi|254780869|r 17 IGM--NMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHEDHYGALHDLWSFL- 91 (559) Q Consensus 17 iG~--N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~--~~~i~~i~iTH~H~DHiGalp~l~~~~- 91 (559) .|. |||++. +++.+|||+|. +... +.+ .+.|.+. .++|+.|++||+|.||+|+++.+.+.+ T Consensus 31 ~G~s~N~YlI~-----~e~~vLIDtg~--~~~~----~~~---~~~l~~~i~~~~I~~II~TH~H~DHiggl~~l~~~~~ 96 (402) T 1e5d_A 31 MGTTYNAYLVE-----DEKTTLFDTVK--AEYK----GEL---LCGIASVIDPKKIDYLVIQHLELDHAGALPALIEACQ 96 (402) T ss_dssp TCEEEEEEEEC-----SSSCEEECCCC--GGGH----HHH---HHHHHTTSCGGGCCEEEECCCSHHHHTTHHHHHHHHC T ss_pred CCEEEEEEEEE-----CCCEEEECCCC--HHHH----HHH---HHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCC T ss_conf 96289999997-----69999995998--2469----999---9999975698788889939996678867999999779 Q ss_pred CCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCC-CCCCCCEEEEEECCCEEEECCCCEECC Q ss_conf 9977929999999999998548865562255175555776348999985567-777653567987681799833402467 Q gi|254780869|r 92 HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNH-SIPETMALVIRSPVGNIVHTGDWKLDD 170 (559) Q Consensus 92 ~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~H-sip~a~~~~I~t~~g~i~ytGDfk~d~ 170 (559) +++||+++.+...+..... ....+...++.++++++|+++++++++.+ .-|+ .+.+..+..+++||||+-... T Consensus 97 ~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~l~~g~~~l~~i~~p~~h~~~--~~~~~~~~~~ilfsgD~~~~~ 170 (402) T 1e5d_A 97 PEKIFTSSLGQKAMESHFH----YKDWPVQVVKHGETLSLGKRTVTFYETRMLHWPD--SMVSWFADEKVLISNDIFGQN 170 (402) T ss_dssp CSEEEEEHHHHHHHHHHHC----CSSCCEEEECTTCEEECSSCEEEEEECTTSSSTT--CEEEEETTTTEEEEETTTCCC T ss_pred CCEEEECHHHHHHHHHCCC----CCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCC--CEEEEECCCCCEEECCCCCCC T ss_conf 9989975778888773146----7664320025863898489368999677777789--669998688807704545677 Q ss_pred CCCCCCCC---CHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECH------HHHHHH Q ss_conf 76654238---98899860878829999635645788877778799999999986-279839999414------778999 Q gi|254780869|r 171 DAILGDVT---DKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMK-NAKGCVLVTTFS------SSVSRI 240 (559) Q Consensus 171 ~p~~g~~~---d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~-~~~grViv~~fa------sni~Ri 240 (559) .+..+... +...+..- .......-..+.-....+.++++.. +.+=+.|++.-. .++.+. T Consensus 171 ~~~~~~~~d~~~~~~~~~~-----------~~~~~~~i~~~~~~~~~~~L~~l~~l~l~~~~I~PgHGpv~~~~~~i~~~ 239 (402) T 1e5d_A 171 IAASERFSDQIPVHTLERA-----------MREYYANIVNPYAPQTLKAIETLVGAGVAPEFICPDHGVIFRGADQCTFA 239 (402) T ss_dssp CCCSCCBGGGSCHHHHHHH-----------HHHHHHHHTGGGHHHHHHHHHHHHHTTCCCSEEEESSSCBEESHHHHHHH T ss_pred CCCCCCCCCCCCHHHHHHH-----------HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCEECCHHHHHHH T ss_conf 7887622344544568999-----------87656540576399999999999866998138963684301583779999 Q ss_pred HHHH--HHHHHHCCEEEEECHHHH----HHH----HHHHHCCCC-CC-CCCCCCHHH-HCCCCCCCEEEEEECCCCCH-- Q ss_conf 9999--999871886998448699----999----988742876-77-654226566-22388020899996696326-- Q gi|254780869|r 241 RSII--DIAEQIGRKIVLLGSSLK----RVV----SVAIDVGII-KK-DQLFLSDES-FGLYPREQLIVIATGSQGEP-- 305 (559) Q Consensus 241 ~~i~--~~a~~~~R~v~i~Grs~~----~~~----~~a~~~g~l-~~-~~~~i~~~~-~~~~p~~~~~ii~TGsqge~-- 305 (559) .+.+ .++.+.++|+++.-.||. ++. +.+.+.|.- .. +-...+.++ ...+.+.+.+++.|.+.+.. T Consensus 240 ~~~y~~~~~~~~~~kv~i~Y~S~~GnT~~~a~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gspt~~~~~~ 319 (402) T 1e5d_A 240 VQKYVEYAEQKPTNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHNNGIL 319 (402) T ss_dssp HHHHHHHHHCCCCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBTTBCC T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCC T ss_conf 99999997325567447999389875999999999888655965999985668757778889758969997047588643 Q ss_pred ---HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHH Q ss_conf ---88988520277765302689669999615886177899999765103113430356664131578897899999975 Q gi|254780869|r 306 ---RSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQW 382 (559) Q Consensus 306 ---~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ 382 (559) ...|.++.. ..++..-..+|+|.. |++.++..+.+.|...|++++. ..++++||++.+|++.+.++ T Consensus 320 ~~~~~~l~~~~~-----~~~~~k~~~~Fgs~g--~~~~a~~~l~~~l~~~g~~~v~----~~~~~~~~p~~~d~~~~~~~ 388 (402) T 1e5d_A 320 PYVAGTLQYIKG-----LRPQNKIGGAFGSFG--WSGESTKVLAEWLTGMGFDMPA----TPVKVKNVPTHADYEQLKTM 388 (402) T ss_dssp HHHHHHHHHHHH-----TCCCSCEEEEEEEES--SSCHHHHHHHHHHHHTTCBCCS----CCEEEESSCCHHHHHHHHHH T ss_pred HHHHHHHHHHHC-----CCCCCCEEEEEECCC--CCCHHHHHHHHHHHHCCCEEEC----CCEEEEECCCHHHHHHHHHH T ss_conf 999999999854-----665899899998489--8838999999999977998957----85799617998999999999 Q ss_pred C Q ss_conf 4 Q gi|254780869|r 383 I 383 (559) Q Consensus 383 i 383 (559) . T Consensus 389 ~ 389 (402) T 1e5d_A 389 A 389 (402) T ss_dssp H T ss_pred H T ss_conf 9 No 9 >3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} Probab=99.81 E-value=1e-19 Score=159.21 Aligned_cols=186 Identities=15% Similarity=0.117 Sum_probs=124.2 Q ss_pred CEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHH--CCCCEE Q ss_conf 606999951777864899977676788876750287079579876641246899605430121607888986--299779 Q gi|254780869|r 19 MNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSF--LHVPVY 96 (559) Q Consensus 19 ~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~--~~~pIY 96 (559) .+|++++. ++..+|||||... .-+.....+|++|||||+|.||+++|+.+... .++||| T Consensus 39 ~ss~li~~----~~~~iLiD~G~~~---------------~~~~~~~~~id~I~iTH~H~DH~~GL~~l~~~~~~~i~iy 99 (258) T 3g1p_A 39 PCSGVVKF----NDAITLIDAGLHD---------------LADRWSPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVY 99 (258) T ss_dssp BSEEEEEE----TTEEEEECCCCTT---------------HHHHCCTTSSCEEECSCCCHHHHGGGTTTTTCSSSCEEEE T ss_pred EEEEEEEE----CCEEEEEECCHHH---------------HHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCEE T ss_conf 34999998----9978999899999---------------9866898588799981674102446245544225785389 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEECCCCCCCC Q ss_conf 29999999999998548865562255175555776348999985567777653567987681799833402467766542 Q gi|254780869|r 97 ASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGD 176 (559) Q Consensus 97 ~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~ 176 (559) +++.+..+.. .+.... .......+++++.+++++++|+++++.|+. .++||.|+.++++++|+||..- T Consensus 100 ~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~H~~-~~~g~~i~~~~~~i~y~gDt~~-------- 167 (258) T 3g1p_A 100 GPPDEQGCDD-LFKHPG--LLDFSHTVEPFVVFDLQGLQVTPLPLNHSK-LTFGYLLETAHSRVAWLSDTAG-------- 167 (258) T ss_dssp ECCCSSCSTT-TTTSCT--TEEEEEECCTTCCEEETTEEEEEEECCSSS-CCEEEEEECSSCEEEEECSCSS-------- T ss_pred ECCCCCCHHH-HHCCCC--CCCCCCCCCCCEEEECCCEEEECCCCCCCC-CCEEEEEECCCEEEEECCCCCC-------- T ss_conf 5441120224-422566--543212356636885052441313247898-7549999629826998486788-------- Q ss_pred CCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECHHHH Q ss_conf 38988998608788299996356457888777787999999999862-79839999414778 Q gi|254780869|r 177 VTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKN-AKGCVLVTTFSSSV 237 (559) Q Consensus 177 ~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~-~~grViv~~fasni 237 (559) .+...+..+...++|+|+.|+|+..+.....+...+.+.++ +.+. ...+++++=++.++ T Consensus 168 -~~~~~~~~l~~~~~d~li~d~~~~~~~~~~~~H~~~~ea~~-~~~~~~~k~~vl~H~s~~~ 227 (258) T 3g1p_A 168 -LPEKTLKFLRNNQPQVMVMDCSHPPRADAPRNHCDLNTVLA-LNQVIRSPRVILTHISHQF 227 (258) T ss_dssp -CCHHHHHHHHHTCCSEEEEECCBSSCSSCCSSSCBHHHHHH-HHHHHCCSCEEEESCCHHH T ss_pred -CCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHH-HHHHCCCCEEEEECCCCCC T ss_conf -89899999618998899954877622379999989999999-9997198989998889988 No 10 >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Probab=99.80 E-value=1.6e-18 Score=150.62 Aligned_cols=321 Identities=18% Similarity=0.148 Sum_probs=180.2 Q ss_pred CEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH--HHCCCEEEEECCCCCCCCCHHHHHHHC-CCCE Q ss_conf 6069999517778648999776767888767502870795798766--412468996054301216078889862-9977 Q gi|254780869|r 19 MNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHEDHYGALHDLWSFL-HVPV 95 (559) Q Consensus 19 ~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~--~~~i~~i~iTH~H~DHiGalp~l~~~~-~~pI 95 (559) -|||++. +++.+|||+|.. .. .+.+ .+.|++. .++|+.|++||+|.||+|+++++...+ ++++ T Consensus 36 ~NsYlI~-----~~~~vLIDtg~~--~~----~~~~---~~~l~~~~~~~~I~~Ii~TH~H~DH~Gg~~~l~~~~p~~~v 101 (398) T 1ycg_A 36 YNAYLIV-----DDKTALVDTVYE--PF----KEEL---IAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHV 101 (398) T ss_dssp ECCEEEC-----SSSCEEECCCCG--GG----HHHH---HHHHHHHCSSCCCSEEEESCCSHHHHTTHHHHHHHCTTCEE T ss_pred EEEEEEE-----CCCEEEEECCCH--HH----HHHH---HHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEE T ss_conf 9999997-----299999949984--67----9999---99999755976865999278986777059999986899989 Q ss_pred ECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECC--CCCCCCCEEEEEECCCEEEECCCCEECCCCC Q ss_conf 92999999999999854886556225517555577634899998556--7777653567987681799833402467766 Q gi|254780869|r 96 YASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVN--HSIPETMALVIRSPVGNIVHTGDWKLDDDAI 173 (559) Q Consensus 96 Y~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~--Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p~ 173 (559) |+++.+..++.... .........+..++++++|+.+++++++. | .|++..+ ..+..+++||||.-..+... T Consensus 102 ~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~lg~~~~~~~~~p~~h-~~~~~~~--~~~~~~iLfsgD~~~~~~~~ 174 (398) T 1ycg_A 102 LCTQRAFDSLKAHY----SHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLH-WPDSMFT--YVPEEALLLPNDAFGQHIAT 174 (398) T ss_dssp EECHHHHHHHHHHT----CSCCCEEEECCTTCEEECSSCEEEEEECTTSS-STTCEEE--EETTTTEEEEETTTCCCCCC T ss_pred EECHHHHHHHHHHC----CCCCCCCEEECCCCEEEECCCEEEEEECCCCC-CCCCEEE--EECCCCEEECCCCCCCCCCC T ss_conf 96899998776402----46775506825998898168159999789888-8885799--98898889918846767788 Q ss_pred CCCC---CCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCEEEE----ECHHHHHHHHHHHH Q ss_conf 5423---898899860878829999635645788877778799999999986-279839999----41477899999999 Q gi|254780869|r 174 LGDV---TDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMK-NAKGCVLVT----TFSSSVSRIRSIID 245 (559) Q Consensus 174 ~g~~---~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~-~~~grViv~----~fasni~Ri~~i~~ 245 (559) .+.. .+...+.. +..+...+-..++...+.+.++++-+ +.+=+.|++ ++-.++.|+...++ T Consensus 175 ~~~~~d~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~~l~~L~l~i~~I~PgHGpv~~~~~~~~i~~y~ 243 (398) T 1ycg_A 175 SVRFDDQVDAGLIMD-----------EAAKYYANILMPFSNLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYA 243 (398) T ss_dssp SCCBGGGSCHHHHHH-----------HHHHHHHHHTGGGHHHHHHHHHHHHHTTCCCSEEEESSSCBBCSCHHHHHHHHH T ss_pred CCCCCCCCCHHHHHH-----------HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHCCHHHHHHHHH T ss_conf 653031122145689-----------875312100368789999999999865998249970898632069999999999 Q ss_pred -HHH-HHCCEEEEE-----CHH--HHH-HHHHHHHCCC----CCCCCCCCCHHH-HCCCCCCCEEEEEECCCCCH----- Q ss_conf -998-718869984-----486--999-9998874287----677654226566-22388020899996696326----- Q gi|254780869|r 246 -IAE-QIGRKIVLL-----GSS--LKR-VVSVAIDVGI----IKKDQLFLSDES-FGLYPREQLIVIATGSQGEP----- 305 (559) Q Consensus 246 -~a~-~~~R~v~i~-----Grs--~~~-~~~~a~~~g~----l~~~~~~i~~~~-~~~~p~~~~~ii~TGsqge~----- 305 (559) -+. +..+++.+. |++ |.+ +.+.+.+.|. ++.. ..+.++ ...+.+-+.+++.|.+++.. T Consensus 244 ~w~~~~~k~~i~ivy~S~~GnT~~~a~~ia~~~~~~g~~v~~~~~~--~~~~~~~~~~~~~~d~iilgspt~~g~~~~~~ 321 (398) T 1ycg_A 244 RWAEGQGKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLS--VSDRNDVIKEILDARAVLVGSPTINNDILPVV 321 (398) T ss_dssp HHHHTCCCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGG--GSCHHHHHHHHHHCSEEEEECCCBTTBCCGGG T ss_pred HHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCHHHHHHHHHHCCEEEEECCCCCCCCCHHH T ss_conf 9973166773499999786749999999998875279679999877--78979999999867979997276288661999 Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHC Q ss_conf 889885202777653026896699996158861778999997651031134303566641315788978999999754 Q gi|254780869|r 306 RSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWI 383 (559) Q Consensus 306 ~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~i 383 (559) ...+.++... .++..-..+|+|-. |++.++..+.+.|...|++++.. ..++++|||+.+|++++.++- T Consensus 322 ~~fl~~l~~~-----~~~~k~~~~fgs~g--~~~~a~~~~~~~l~~~g~~~v~~---~~~~~~~~P~~~~l~~~~~~g 389 (398) T 1ycg_A 322 SPLLDDLVGL-----RPKNKVGLAFGAYG--WGGGAQKILEERLKAAKIELIAE---PGPTVQWVPRGEDLQRCYELG 389 (398) T ss_dssp HHHHHHHHHH-----CCSSCEEEEEEEES--SSCCHHHHHHHHHHHTTCEESCS---SCCEEESSCCHHHHHHHHHHH T ss_pred HHHHHHHHCC-----CCCCCEEEEEEEEC--CCCHHHHHHHHHHHHCCCEEEEC---CEEEEECCCCHHHHHHHHHHH T ss_conf 9999998604-----65799899999308--78679999999999779989617---718994579989999999999 No 11 >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A* Probab=99.75 E-value=7.1e-17 Score=138.85 Aligned_cols=326 Identities=16% Similarity=0.182 Sum_probs=181.9 Q ss_pred EEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHH-----HHHCCCEEEEECCCCCCCCCHHHHHHHC-CC Q ss_conf 06999951777864899977676788876750287079579876-----6412468996054301216078889862-99 Q gi|254780869|r 20 NMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMK-----ERKNLMAIFITHAHEDHYGALHDLWSFL-HV 93 (559) Q Consensus 20 N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~-----~~~~i~~i~iTH~H~DHiGalp~l~~~~-~~ 93 (559) |||++. .++..+|||+|..-..+. + ++.|++ ..++|+.|++||.|.||+|++++++..+ ++ T Consensus 36 NsYlI~----~~~~~~LIDtG~~~~~~~------~---~~~l~~~~~~i~~~~I~~Ii~TH~H~DH~ggl~~~~~~~~~~ 102 (404) T 2ohh_A 36 NAYLVC----GDEGVALIDNSYPGTFDE------L---MARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRRFPEA 102 (404) T ss_dssp CCEEEE----CSSCEEEECCCCTTCHHH------H---HHHHHHHHHHHTCCCCCEEECSCCSHHHHTTHHHHHHHSTTC T ss_pred EEEEEE----CCCEEEEEECCCCCCHHH------H---HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC T ss_conf 999997----198259991989843899------9---999999986479656869998999987541199999877998 Q ss_pred CEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECC-CCCCCCCEEEEEECCCEEEECCCCEECCCC Q ss_conf 7792999999999999854886556225517555577634899998556-777765356798768179983340246776 Q gi|254780869|r 94 PVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVN-HSIPETMALVIRSPVGNIVHTGDWKLDDDA 172 (559) Q Consensus 94 pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~-Hsip~a~~~~I~t~~g~i~ytGDfk~d~~p 172 (559) ++|+++.+...+..... .........++.++++++|+.+++++++. +..||++.+.+ +..+++||||+-..+.. T Consensus 103 ~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~g~~l~lg~~~l~~i~~p~gH~~~~~~~~~--~~~~iLfsgD~~g~~~~ 177 (404) T 2ohh_A 103 PIYCTEVAVKGLLKHYP---SLREAEFMTVKTGDVLDLGGKTLTFLETPLLHWPDSMFTLL--DEDGILFSNDAFGQHLC 177 (404) T ss_dssp CEEECHHHHHHHHHHCG---GGGGSCEEECCTTCEEECSSCEEEEEECTTSSSTTCEEEEE--ETTTEEECTTTTCCCCC T ss_pred EEEECHHHHHHHHHHCC---CCCCHHHEECCCCCEEECCCCEEEEEECCCCCCCCCEEEEE--CCCCEEEECCCCCCCCC T ss_conf 89967888877775267---77623313225798897376158999526889899689998--89999997976666778 Q ss_pred CCCCCC---CHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH---HCCCCEEEEECHHHHHHHHHHHH- Q ss_conf 654238---98899860878829999635645788877778799999999986---27983999941477899999999- Q gi|254780869|r 173 ILGDVT---DKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMK---NAKGCVLVTTFSSSVSRIRSIID- 245 (559) Q Consensus 173 ~~g~~~---d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~---~~~grViv~~fasni~Ri~~i~~- 245 (559) ..+... +...+.. +..+....-..++...+.+.++++-+ ..+-++|++.-..-+.+.+++++ T Consensus 178 ~~~~~~~~~~~~~~~~-----------~~~~yy~~i~~p~~~~~~~~l~~l~~L~~~~~i~~I~PgHGpv~~~~~~~i~~ 246 (404) T 2ohh_A 178 CPQRLDREIPEYILMD-----------AARKFYANLITPLSKLVLKKFDEVKELGLLERIQMIAPSHGQIWTDPMKIIEA 246 (404) T ss_dssp CSCCBGGGSCHHHHHH-----------HHHHHHHHHTGGGHHHHHHHHHHHHHTTCGGGCSEEECSSSCBBSSHHHHHHH T ss_pred CCCCCCCCCCCCHHHH-----------HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHCCHHHHHHH T ss_conf 8641014456302377-----------77543645026768999999999986646678639962770275698999999 Q ss_pred ----HHHHHCCEEEEE-----C--HHHHHH-HHHHHHCCCCCC-CCCC-CCH-HHHCCCCCCCEEEEEECCC-CC----H Q ss_conf ----998718869984-----4--869999-998874287677-6542-265-6622388020899996696-32----6 Q gi|254780869|r 246 ----IAEQIGRKIVLL-----G--SSLKRV-VSVAIDVGIIKK-DQLF-LSD-ESFGLYPREQLIVIATGSQ-GE----P 305 (559) Q Consensus 246 ----~a~~~~R~v~i~-----G--rs~~~~-~~~a~~~g~l~~-~~~~-i~~-~~~~~~p~~~~~ii~TGsq-ge----~ 305 (559) +..+..++|.+. | +.|.+. .+.+.+.|.--. .... .+. .....+.+-+.+++.|-+. |+ - T Consensus 247 y~~~~~~~~~~kv~Ivy~S~~GnT~~~A~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~ii~Gspt~~~~~~~~~ 326 (404) T 2ohh_A 247 YTGWATGMVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSV 326 (404) T ss_dssp HHHHHTTCCCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEETTEECTHH T ss_pred HHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCCCCCCCCHHH T ss_conf 99861055576262898558657999999999988757981899992588978889999857955996365178468899 Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHC Q ss_conf 889885202777653026896699996158861778999997651031134303566641315788978999999754 Q gi|254780869|r 306 RSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWI 383 (559) Q Consensus 306 ~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~i 383 (559) ..-+.++..-.+.. +.....++|+|-. |++.++..+.+.|...|++++.. ..+.|+|+.+|++.+.++- T Consensus 327 ~~fl~~l~~~~~~~--~~gK~~~~Fgs~g--~~g~a~~~~~~~l~~~G~~vv~~-----~~~~~~P~~e~l~~~~~~g 395 (404) T 2ohh_A 327 GDLLMYLRGLKFNR--TLTRKALVFGSMG--GNGGATGTMKELLAEAGFDVACE-----EEVYYVPTGDELDACFEAG 395 (404) T ss_dssp HHHHHHHHHHCGGG--TCCEEEEEEEEES--SSCCHHHHHHHHHHHTTEEEEEE-----EEEESSCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCC--CCCCEEEEEECCC--CCHHHHHHHHHHHHHCCCEEECC-----EEEEECCCHHHHHHHHHHH T ss_conf 99999986576456--5798699999048--87699999999999779989456-----7895079989999999999 No 12 >2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Probab=99.72 E-value=6.6e-16 Score=131.86 Aligned_cols=136 Identities=19% Similarity=0.276 Sum_probs=95.0 Q ss_pred EEEEEECCCC-CCCCC--EEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHH---HHHCCCEEEEECCCC Q ss_conf 3999940686-83466--06999951777864899977676788876750287079579876---641246899605430 Q gi|254780869|r 5 ELVFLPLGGV-GEIGM--NMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMK---ERKNLMAIFITHAHE 78 (559) Q Consensus 5 ~i~~~~lGG~-~eiG~--N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~---~~~~i~~i~iTH~H~ 78 (559) +|.|+--||. --.++ +|+++++....++..+|||||-++. ..|.+ ...++++|||||.|. T Consensus 3 ~l~~LGtg~~~p~~~r~~s~~lv~~~~~~~~~~iL~DcG~g~~--------------~~l~~~~~~~~~i~~IfiTH~H~ 68 (306) T 2cbn_A 3 NLIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQ--------------HQLLHTAFNPGKLDKIFISHLHG 68 (306) T ss_dssp EEEEEECBSSSCCSSCCBCEEEEECCCSSCCCEEEECCCTTHH--------------HHHHTSCCCTTTEEEEECSCCCH T ss_pred EEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCHHHH--------------HHHHHHCCCHHHCCEEEEECCCH T ss_conf 8999776899899999648899997268899489999975899--------------99998189966775899834668 Q ss_pred CCCCCHHHHHHHC-------CCCEECCHHHHHHHHHHHHHCCCCCC--CCEEEECCCCEEEECCEEEEEEECCCCCCCCC Q ss_conf 1216078889862-------99779299999999999985488655--62255175555776348999985567777653 Q gi|254780869|r 79 DHYGALHDLWSFL-------HVPVYASPFAIGLLEAKRVYERVSKK--IPCISFQAGDKVDVGAFSIESVRVNHSIPETM 149 (559) Q Consensus 79 DHiGalp~l~~~~-------~~pIY~s~~t~~li~~~~~~~~~~~~--~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~ 149 (559) ||+++||.++... .++||+++.+..+++..+........ ..+.+......++.+.+.+++++..|+++ +. T Consensus 69 DH~~Gl~~ll~~~~~~~~~~~l~i~gP~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~ 147 (306) T 2cbn_A 69 DHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLE-CY 147 (306) T ss_dssp HHHTTHHHHHHHHHHTTCCSCEEEEESTTHHHHHHHHHHHTTCCCSSCEEEEECCSEEEEECSSEEEEEEECBSSSC-CE T ss_pred HHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCEEEEEEECCCCCC-CC T ss_conf 98078401331012037898765668677899999998653244444412332135411203752565430355544-32 Q ss_pred EEEEEE Q ss_conf 567987 Q gi|254780869|r 150 ALVIRS 155 (559) Q Consensus 150 ~~~I~t 155 (559) ++.+.. T Consensus 148 ~~~~~~ 153 (306) T 2cbn_A 148 GYRIEE 153 (306) T ss_dssp EEEEEE T ss_pred CCEEEE T ss_conf 201220 No 13 >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Probab=99.60 E-value=2.4e-13 Score=113.43 Aligned_cols=127 Identities=15% Similarity=0.146 Sum_probs=92.0 Q ss_pred EEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH--HHCCCEEEEECCCCCCCCCHHHHHHHC-CCCEE Q ss_conf 069999517778648999776767888767502870795798766--412468996054301216078889862-99779 Q gi|254780869|r 20 NMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHEDHYGALHDLWSFL-HVPVY 96 (559) Q Consensus 20 N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~--~~~i~~i~iTH~H~DHiGalp~l~~~~-~~pIY 96 (559) |||++. +++.+|||+|.. .. .+.+ .+.|.+. .++|+.|++||.|.||+|+++.++..+ +++|| T Consensus 42 NsYLI~-----~e~~vLIDtg~~--~~----~~~~---l~~i~~~i~~~~I~~II~TH~H~DH~ggl~~l~~~~p~a~i~ 107 (414) T 2q9u_A 42 NSYFID-----DECPTVIDSVKY--PF----AEEW---LSRIAACCPLDKIKYVVMNHAEGDHASSLKDHYHKFTNATFV 107 (414) T ss_dssp CCEEEC-----SSSCEEECCCCG--GG----HHHH---HHHHHHHSCGGGCCEEECSCCSGGGTTTHHHHGGGSTTCEEE T ss_pred EEEEEE-----CCCEEEEECCCH--HH----HHHH---HHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEE T ss_conf 999996-----698899909980--16----9999---999997569877998996909664760299999878898799 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECC--CCCCCCCEEEEEECCCEEEECCCCE Q ss_conf 2999999999999854886556225517555577634899998556--7777653567987681799833402 Q gi|254780869|r 97 ASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVN--HSIPETMALVIRSPVGNIVHTGDWK 167 (559) Q Consensus 97 ~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~--Hsip~a~~~~I~t~~g~i~ytGDfk 167 (559) +++.+..+++.... ........++.++.+++|+.+++++++. | -||+. ++..+..+++||||.- T Consensus 108 ~~~~~~~~~~~~~~----~~~~~~~~~~~g~~l~lg~~~l~~i~~p~gH-~~~~~--~~y~~~~~iLfsGD~~ 173 (414) T 2q9u_A 108 CTKKCQEHLKILYG----MEKATWLIVDDKYTLKIGKRTLKFIPVPLLH-WPDST--FTYCPEDKILFSNDGF 173 (414) T ss_dssp ECHHHHHHHHHHHC----CTTCCEEECCTTCCEECSSCEEEEEECTTSS-STTCE--EEEETTTTEEEEETTT T ss_pred ECHHHHHHHHHHCC----CCCCCEEEECCCCEEEECCEEEEEECCCCCC-CCCCE--EEEECCCCCEEECCCC T ss_conf 75899988887438----9865258715898897565589997036898-68978--9999898968945745 No 14 >1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Probab=99.55 E-value=7e-12 Score=102.91 Aligned_cols=124 Identities=23% Similarity=0.233 Sum_probs=91.1 Q ss_pred EEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH--HHCCCEEEEECCCCCCCCCHHHHHHHC--CCCE Q ss_conf 069999517778648999776767888767502870795798766--412468996054301216078889862--9977 Q gi|254780869|r 20 NMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHEDHYGALHDLWSFL--HVPV 95 (559) Q Consensus 20 N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~--~~~i~~i~iTH~H~DHiGalp~l~~~~--~~pI 95 (559) |+|++. .++..+|||+|. +.. .+.+ ++.|++. .++|+.|++||.|.||+|+++.+++++ +++| T Consensus 53 NsYLI~----~~~~~vLIDtg~--~~~----~~~~---l~~l~~~i~~~~I~yIi~TH~H~DH~Ggl~~l~~~~~~~~~i 119 (410) T 1vme_A 53 NAYLVK----LNGANVLIDGWK--GNY----AKEF---IDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTIGHDVEI 119 (410) T ss_dssp EEEEEE----CSSCEEEECCCC--GGG----HHHH---HHHHHHHSCGGGCCEEECSCCCHHHHTTHHHHHHHHCSCCEE T ss_pred EEEEEE----ECCEEEEEECCC--HHH----HHHH---HHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEE T ss_conf 999999----799579991997--567----9999---999997579767689994939653775499999970999899 Q ss_pred ECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECC-CCCCCCCEEEEEECCCEEEECCCC Q ss_conf 92999999999999854886556225517555577634899998556-777765356798768179983340 Q gi|254780869|r 96 YASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVN-HSIPETMALVIRSPVGNIVHTGDW 166 (559) Q Consensus 96 Y~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~-Hsip~a~~~~I~t~~g~i~ytGDf 166 (559) |+++.+..++..... ......++.++.+++|+.+++++++. |.-|+++.+. . ..++||||. T Consensus 120 ~~~~~~~~~~~~~~~------~~~~~~v~~g~~l~lG~~~l~~i~~P~~H~p~~~~~y--~--~~iLFsgD~ 181 (410) T 1vme_A 120 IASNFGKRLLEGFYG------IKDVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVTY--L--DGILFSCDV 181 (410) T ss_dssp EECHHHHHHHHHHHC------CCCCEECCTTCEEEETTEEEEEEECTTSSSTTCEEEE--E--TTEEEEETT T ss_pred EECHHHHHHHHHCCC------CCCCEEECCCCEEEECCEEEEEEECCCCCCCCCCCEE--E--CCEEEECCC T ss_conf 978888642010167------6531683579999866726999978998889971021--2--898998863 No 15 >3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida KT2440} PDB: 1xto_A Probab=99.54 E-value=8.8e-14 Score=116.57 Aligned_cols=157 Identities=11% Similarity=0.119 Sum_probs=100.0 Q ss_pred EEEEEEECCCCCCEEEEEECCCCCCC--------CCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC Q ss_conf 06999951777864899977676788--------8767502870795798766412468996054301216078889862 Q gi|254780869|r 20 NMALYGYGSPSSRKWIMIDCGVSFPK--------DDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFL 91 (559) Q Consensus 20 N~~~~~~~~~~~~~~iiiD~G~~fp~--------~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~ 91 (559) .|.++. ...+.++|||||-.+.. ....|++ ..+|++|||||.|.||+++||.|.+.. T Consensus 42 ssi~l~---~~g~~~iLiD~G~~~~~ql~~~~~~~~~~~i~------------~~~Id~I~lTH~H~DH~~GL~~L~~~~ 106 (321) T 3jxp_A 42 SSIALS---DDGVHWILCNASPDIRAQLQAFAPMQPARALR------------DTGINAIVLLDSQIDHTTGLLSLREGC 106 (321) T ss_dssp CEEEEE---SSSSSEEEECCCTTHHHHHHTCGGGCCCSSSS------------CCSEEEEECSCCCHHHHGGGGGGGGGC T ss_pred EEEEEE---ECCCEEEEEECCCCHHHHHHHHHHHCCCCCCC------------CCCCCEEEEECCCCCHHHHHHHHHHHC T ss_conf 479999---79985999979975999999976548333467------------887558997077612476799996122 Q ss_pred CCCEECCHHHHHHHHHHHH----HCCCCCCCCEEEECCCCEEEE---CCEEEEEEECCCCCC------------CCCEEE Q ss_conf 9977929999999999998----548865562255175555776---348999985567777------------653567 Q gi|254780869|r 92 HVPVYASPFAIGLLEAKRV----YERVSKKIPCISFQAGDKVDV---GAFSIESVRVNHSIP------------ETMALV 152 (559) Q Consensus 92 ~~pIY~s~~t~~li~~~~~----~~~~~~~~~~~~i~~~~~~~~---g~~~v~~~~~~Hsip------------~a~~~~ 152 (559) ..+||+++.+...+...+. ............+...+...+ .+++++++++.|..+ +++||. T Consensus 107 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~g~~ 186 (321) T 3jxp_A 107 PHQVWCTDMVHQDLTTGFPLFNMLSHWNGGLQWNRIELEGSFVIDACPNLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLM 186 (321) T ss_dssp CEEEEECHHHHHHTTTTSCHHHHHTTTTTCEEEEECCSSSCEECTTSTTEEEEEEEECCCCCTTCTTTTSCCTTSEEEEE T ss_pred EEEEEECHHHHHHHHHCCCHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCEEEEE T ss_conf 02376066674444415202110133467641135504666210246983686665335784133456247777336999 Q ss_pred EEEC--CCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCC Q ss_conf 9876--8179983340246776654238988998608788299996356457 Q gi|254780869|r 153 IRSP--VGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAM 202 (559) Q Consensus 153 I~t~--~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~ 202 (559) |+.+ +++++|++|-.- ...++..+.+ ++|+|+.|+|..+ T Consensus 187 i~~~~~g~~~~y~~Dt~~-------~~~~~~~~~~----~adlli~e~~~~~ 227 (321) T 3jxp_A 187 VEDTRTGGKLFYAPGLGQ-------VDEKLLAMMH----GADCLLVDGTLWE 227 (321) T ss_dssp EEETTTCCEEEEESSCCC-------CCHHHHHHHH----HCSEEEEECCCSS T ss_pred EEECCCCCEEEEECCCCC-------CHHHHHHHHC----CCCEEEEEEECCC T ss_conf 985047867999788863-------0167775421----5767999850257 No 16 >3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Probab=99.54 E-value=4.4e-13 Score=111.54 Aligned_cols=144 Identities=23% Similarity=0.319 Sum_probs=99.8 Q ss_pred CCCCEEEEEECCCCC-CCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCC Q ss_conf 988639999406868-3466069999517778648999776767888767502870795798766412468996054301 Q gi|254780869|r 1 MKNEELVFLPLGGVG-EIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHED 79 (559) Q Consensus 1 m~~~~i~~~~lGG~~-eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~D 79 (559) |.-..+..+|+|=.+ --..|+|++. .++..+|||+|....... + ...++|++||+||+|.| T Consensus 1 ~~~~~~~~i~~~p~~~~~~~n~~li~----~~~~~~lID~G~~~~~~~----------~----~~~~~i~~VilTH~H~D 62 (261) T 3adr_A 1 MPCRGLHSIPAGPVEFPEIATVYVMC----GEKLTVMIDAGVSNSIAD----------F----SFLDKLDYIVLTHLHID 62 (261) T ss_dssp -CCCEEEEEECSCTTCGGGSEEEEEE----CSSCEEEECCCCTTCCCC----------C----TTCSCCCEEECSCCSGG T ss_pred CCCCCEEEEECCCCCCCCEEEEEEEE----ECCEEEEECCCCCHHHHH----------H----HCCCCCCEEEECCCCCC T ss_conf 98785489207986768768999999----499589987999829998----------6----24067899995989864 Q ss_pred CCCCHHHHHHHCCCCEECCHHHHHHHHHH-----H------------H-HCCCC---CCCCEEEECCCCEEEECCEEEEE Q ss_conf 21607888986299779299999999999-----9------------8-54886---55622551755557763489999 Q gi|254780869|r 80 HYGALHDLWSFLHVPVYASPFAIGLLEAK-----R------------V-YERVS---KKIPCISFQAGDKVDVGAFSIES 138 (559) Q Consensus 80 HiGalp~l~~~~~~pIY~s~~t~~li~~~-----~------------~-~~~~~---~~~~~~~i~~~~~~~~g~~~v~~ 138 (559) |+|+++++.+.+++|||+++.+...+... + . ..... .......+..++.+++|+.++++ T Consensus 63 H~gg~~~l~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lg~~~~~~ 142 (261) T 3adr_A 63 HIGLLPELLQVYKAKVLVKSGFKKYLTSEDGLKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNEEFDLGGYRMRL 142 (261) T ss_dssp GTTTHHHHHHHSCCEEEEETTCTHHHHSHHHHHHHHHHHHHHHTHHHHHHCCCCSCCCGGGEEEECSCCEEECSSSEEEE T ss_pred CCCCHHHHHHCCCCCEEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEECCCEEEE T ss_conf 42876676543567433378799986250124567788887640000101466555565524883363389506610047 Q ss_pred EEC-CCCCCCCCEEEEEECCCEEEECCCCE Q ss_conf 855-67777653567987681799833402 Q gi|254780869|r 139 VRV-NHSIPETMALVIRSPVGNIVHTGDWK 167 (559) Q Consensus 139 ~~~-~Hsip~a~~~~I~t~~g~i~ytGDfk 167 (559) +++ +| .|+++++.+ ..++||||.. T Consensus 143 ~~~pGH-t~~~~~~~~----~~vlftGD~~ 167 (261) T 3adr_A 143 IYTPGH-ARHHMSVLV----DDFLFTGDSA 167 (261) T ss_dssp EECTTS-CTTCEEEEE----TTEEEEETSS T ss_pred EECCCC-CCCCEEEEE----CCEEEECCCC T ss_conf 757988-887689998----9999989846 No 17 >2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Probab=99.51 E-value=2.4e-13 Score=113.47 Aligned_cols=147 Identities=20% Similarity=0.280 Sum_probs=107.2 Q ss_pred EEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCH Q ss_conf 39999406868346606999951777864899977676788876750287079579876641246899605430121607 Q gi|254780869|r 5 ELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGAL 84 (559) Q Consensus 5 ~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGal 84 (559) +++++|.|-.+ .|||++. .+..++.+|||+|.. .+.+ .++|++...++++||+||+|.||+|++ T Consensus 2 ~~~~i~~~~~~---~N~yli~--~~~~~~~ilID~G~~--------~~~i---~~~l~~~~~~i~~Vi~TH~H~DH~gg~ 65 (210) T 2xf4_A 2 NYRIIPVTAFS---QNCSLIW--CEQTRLAALVDPGGD--------AEKI---KQEVDASGVTLMQILLTHGHLDHVGAA 65 (210) T ss_dssp EEEEEEETTTT---EEEEEEE--CTTTCEEEEECCCSC--------HHHH---HHHHHHHTCEEEEEECSCSCHHHHTTH T ss_pred CEEEEECCCHH---CEEEEEE--ECCCCEEEEEECCCC--------HHHH---HHHHHHCCCCEEEEEECCCCCCCCCCH T ss_conf 43999878446---6899999--899998999979808--------9999---999997799348999787998553518 Q ss_pred HHHHHHCCCCEECCHHHHHHHHHH----HHHCCC---CCCCCEEEECCCCEEEECCEEEEEEECC-CCCCCCCEEEEEEC Q ss_conf 888986299779299999999999----985488---6556225517555577634899998556-77776535679876 Q gi|254780869|r 85 HDLWSFLHVPVYASPFAIGLLEAK----RVYERV---SKKIPCISFQAGDKVDVGAFSIESVRVN-HSIPETMALVIRSP 156 (559) Q Consensus 85 p~l~~~~~~pIY~s~~t~~li~~~----~~~~~~---~~~~~~~~i~~~~~~~~g~~~v~~~~~~-Hsip~a~~~~I~t~ 156 (559) .++.+.+++|+|++......+... ...... ........++.++.+++|+.+++++++. | .||+.++.+ + T Consensus 66 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~g~~~~~~i~tPGH-T~g~~~~~~--~ 142 (210) T 2xf4_A 66 SELAQHYGVPVIGPEKEDEFWLQGLPAQSRMFGLDECQPLTPDRWLNDGDRVSVGNVTLQVLHCPGH-TPGHVVFFD--E 142 (210) T ss_dssp HHHHHHHTCCEECCCGGGHHHHHTHHHHHHHTTCCCCCCCCCSBCCCTTCEEEETTEEEEEEECCSS-STTCEEEEE--T T ss_pred HHHHHHHCCCEEEECCHHHHHHCCCHHHHHHCCCCCCCCCCCCEEECCCCCCEECCEEEEEEEECCC-CCCCEEEEE--C T ss_conf 9987750984785010456652042123211033345567785893168742369989999992699-998689997--7 Q ss_pred CCEEEECCCCEECC Q ss_conf 81799833402467 Q gi|254780869|r 157 VGNIVHTGDWKLDD 170 (559) Q Consensus 157 ~g~i~ytGDfk~d~ 170 (559) +.++++|||+-++. T Consensus 143 ~~~~l~~GD~~~~~ 156 (210) T 2xf4_A 143 QSQLLISGDVIFKG 156 (210) T ss_dssp TTTEEEEETSEETT T ss_pred CCCCCCCCCEEECC T ss_conf 88842148886379 No 18 >1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Probab=99.48 E-value=1.3e-12 Score=108.11 Aligned_cols=143 Identities=16% Similarity=0.164 Sum_probs=97.3 Q ss_pred CCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH---HHCCCEEEEECCCCCCCCCHHHHHHHC Q ss_conf 83466069999517778648999776767888767502870795798766---412468996054301216078889862 Q gi|254780869|r 15 GEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE---RKNLMAIFITHAHEDHYGALHDLWSFL 91 (559) Q Consensus 15 ~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~---~~~i~~i~iTH~H~DHiGalp~l~~~~ 91 (559) |..+-|||++.. .+..+|||||.. ... +.+ ...|++. ..+|++||+||.|.||+|+++++.+.+ T Consensus 34 g~~~~~~~li~~----~~g~iLID~G~~--~~~----~~~---~~~l~~~g~~~~~I~~Il~TH~H~DH~gg~~~l~~~~ 100 (269) T 1sml_A 34 GTEDLTALLVQT----PDGAVLLDGGMP--QMA----SHL---LDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRRT 100 (269) T ss_dssp SBTTBCCEEEEE----TTEEEEECCBSG--GGH----HHH---HHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHHS T ss_pred CCCCEEEEEEEE----CCEEEEECCCCC--CHH----HHH---HHHHHHCCCCCHHCCEEEECCCCCCCCCCHHHHHHHH T ss_conf 999928999998----997699848995--129----999---9999974998032549997999835415099999986 Q ss_pred CCCEECCHHHHHHHHHHHHHCCC-------CCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEE-ECC---CEE Q ss_conf 99779299999999999985488-------6556225517555577634899998556777765356798-768---179 Q gi|254780869|r 92 HVPVYASPFAIGLLEAKRVYERV-------SKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIR-SPV---GNI 160 (559) Q Consensus 92 ~~pIY~s~~t~~li~~~~~~~~~-------~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~-t~~---g~i 160 (559) ++|||+++.+...+......... .+......+..++.+++|+.+++++.+....||..++.+. +.. +.+ T Consensus 101 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~g~~l~lg~~~~~~~~~PgH~~g~~~~~~~~~~~~~~~~v 180 (269) T 1sml_A 101 GAKVAANAESAVLLARGGSDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRI 180 (269) T ss_dssp SCEEEECHHHHHHHHTTTCSBTTTBTSSCCCCCCCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEETTEEEEE T ss_pred CCCEEECHHHHHHHHHCCHHHHHHCCCCCCCCCCCCEECCCCCEEECCCCEEEEEECCCCCCCCEEEEEECCCCCCCEEE T ss_conf 99476378898877501112233123567887425256379988850992589996788897888999963457852179 Q ss_pred EECCCCEECC Q ss_conf 9833402467 Q gi|254780869|r 161 VHTGDWKLDD 170 (559) Q Consensus 161 ~ytGDfk~d~ 170 (559) ++.+|+.... T Consensus 181 ~~~~~~~~~~ 190 (269) T 1sml_A 181 AYADSLSAPG 190 (269) T ss_dssp EECCCCCCTT T ss_pred EECCCCCCCC T ss_conf 9838867899 No 19 >1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Probab=99.45 E-value=6.9e-13 Score=110.18 Aligned_cols=137 Identities=18% Similarity=0.299 Sum_probs=98.9 Q ss_pred CCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHH-HCCCEEEEECCCCCCCCCHHHHHH Q ss_conf 0686834660699995177786489997767678887675028707957987664-124689960543012160788898 Q gi|254780869|r 11 LGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER-KNLMAIFITHAHEDHYGALHDLWS 89 (559) Q Consensus 11 lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~-~~i~~i~iTH~H~DHiGalp~l~~ 89 (559) ..|.+.++.|++++. .++.++|||+|....... .+ .+++++.. .+|++|++||.|.||+|+++++.. T Consensus 29 ~~~~~~~~~N~~li~----~~~~~iliDt~~~~~~~~-----~l---~~~i~~~~~~pi~~vi~TH~H~DH~gg~~~~~~ 96 (232) T 1a7t_A 29 IEGWGMVPSNGMIVI----NNHQAALLDTPINDAQTE-----ML---VNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQR 96 (232) T ss_dssp ETTTEEEEEEEEEEE----ETTEEEEESCCSSHHHHH-----HH---HHHHHHHHCCEEEEEECSSSSHHHHTTHHHHHH T ss_pred CCCCCEECCEEEEEE----ECCEEEEEECCCCHHHHH-----HH---HHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHH T ss_conf 888612275699999----899999996989989999-----99---999987139973899979988522233999985 Q ss_pred HCCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEEC--CCCCCCCCEEEEEECCCEEEECCCCE Q ss_conf 6299779299999999999985488655622551755557763489999855--67777653567987681799833402 Q gi|254780869|r 90 FLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV--NHSIPETMALVIRSPVGNIVHTGDWK 167 (559) Q Consensus 90 ~~~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~--~Hsip~a~~~~I~t~~g~i~ytGDfk 167 (559) . ++++|+++.+..++.... .......++.+..+++|+.+++++.. +|+ ||+.. +..|+.+++||||.- T Consensus 97 ~-~~~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~v~~~~~~pGHt-~g~~~--~~~~~~~vlf~GD~~ 166 (232) T 1a7t_A 97 K-GVQSYANQMTIDLAKEKG------LPVPEHGFTDSLTVSLDGMPLQCYYLGGGHA-TDNIV--VWLPTENILFGGCML 166 (232) T ss_dssp T-TCEEEEEHHHHHHHHHHT------CCCCSEEESSEEEEEETTEEEEEECCCCSSS-TTCCE--EEETTTTEEEEETTS T ss_pred C-CCEEEEECCHHHHHHHCC------CCCCCEEECCCCEEEECCEEEEEEECCCCCC-CCCEE--EEECCCCEEEECCCC T ss_conf 8-995998220255654325------6666054157619998999999984238999-87279--995899999988862 Q ss_pred EC Q ss_conf 46 Q gi|254780869|r 168 LD 169 (559) Q Consensus 168 ~d 169 (559) +. T Consensus 167 ~~ 168 (232) T 1a7t_A 167 KD 168 (232) T ss_dssp CC T ss_pred CC T ss_conf 78 No 20 >3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural genomics, PSI-2; 1.80A {Vibrio cholerae o1 biovar eltor str} Probab=99.45 E-value=1.1e-10 Score=94.28 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=85.9 Q ss_pred HCCCEEEEECCCCCCCCC--HHHHHHHC--CCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEEC Q ss_conf 124689960543012160--78889862--99779299999999999985488655622551755557763489999855 Q gi|254780869|r 66 KNLMAIFITHAHEDHYGA--LHDLWSFL--HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV 141 (559) Q Consensus 66 ~~i~~i~iTH~H~DHiGa--lp~l~~~~--~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~ 141 (559) .+|++|||||.|.||++. +..++... .+++|++..+...++. .+. +..++.++++++.+++++++|+++++ T Consensus 132 ~~IDaVLITH~H~DHlD~~tl~~i~~~~~~~~~~igP~~~~~~l~~----~gv-p~~~ii~l~~gd~~~i~~i~I~~~pa 206 (379) T 3bv6_A 132 KEIDAVLASHDHADHIDVNVAAAVLQNCGEHVKFIGPQACVDLWLG----WGV-PQERCIVAKVGDVLEIGDVKIRVLDS 206 (379) T ss_dssp CCCSEEECSBCSGGGCCHHHHHHHHHHSCTTCEEEECHHHHHHHHH----HTC-CGGGEEECCTTCEEEETTEEEEEEEC T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHH----CCC-CHHHEEEECCCCEEEECCEEEEEEEE T ss_conf 9988899899971117969999998507974599837899999987----599-66766881478728987779999943 Q ss_pred CCCCC---------------------CCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCC Q ss_conf 67777---------------------65356798768179983340246776654238988998608788299996356 Q gi|254780869|r 142 NHSIP---------------------ETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDST 199 (559) Q Consensus 142 ~Hsip---------------------~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT 199 (559) -|+.. .++||+|++++++|+|+||- +...++..+.+.. .+|+.++... T Consensus 207 ~H~~~~~~~p~~~~~~~~~~~~~~~~~~~gylIe~~g~~Iy~sGDT--------~~~~~~~~ig~~~--~iDvall~iG 275 (379) T 3bv6_A 207 FDRTALVTLPKGVSSYDKAILDGMDERAVNYLIETSGGSVYHSGDS--------HYSNYYAKHGNDY--QIDVALLSYG 275 (379) T ss_dssp CCHHHHTCCCTTSCSSCGGGGGCHHHHBEEEEEEETTEEEEECTTC--------CCCTTHHHHHHHS--CCSEEEEEBC T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCC--------CCCHHHHHHHHHC--CCCEEEECCC T ss_conf 5365100147764446766666887653168897199389996799--------9647899988647--9989997888 No 21 >2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline binding protein; PCE, hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Probab=99.44 E-value=2.3e-12 Score=106.46 Aligned_cols=230 Identities=16% Similarity=0.194 Sum_probs=123.4 Q ss_pred CCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCC--CCCC---------------CCCEEEECCCHHHHHHH Q ss_conf 886399994068683466069999517778648999776767--8887---------------67502870795798766 Q gi|254780869|r 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSF--PKDD---------------LPGVDLVFPDITFIMKE 64 (559) Q Consensus 2 ~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~f--p~~~---------------~~gid~iiPd~~~l~~~ 64 (559) +..+|.|+..|- |. .+|.+++. ++..+|||||... +... .++-+.++ .||.+. T Consensus 4 ~~~~I~fldVGq-G~--adaili~~----~g~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~L~~~ 73 (547) T 2bib_A 4 SGNKIHFINVQE-GG--SDAIILES----NGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVF---RRLKEL 73 (547) T ss_dssp SCEEEEEECBSS-SB--CCEEEEEE----TTEEEEEECCCCSCCCCSSSTTSCCCTTCCCCGGGCCHHHHH---HHHHHT T ss_pred CCCEEEEEECCC-CC--CEEEEEEE----CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---HHHHHC T ss_conf 899999998899-99--88999999----999999989998656643222222222345543321267889---989875 Q ss_pred H-HCCCEEEEECCCCCCCCCHHHHHHHCCC-CEECCHHHHH-------------HHHHHHHHCCCCCCCCE--EEECCCC Q ss_conf 4-1246899605430121607888986299-7792999999-------------99999985488655622--5517555 Q gi|254780869|r 65 R-KNLMAIFITHAHEDHYGALHDLWSFLHV-PVYASPFAIG-------------LLEAKRVYERVSKKIPC--ISFQAGD 127 (559) Q Consensus 65 ~-~~i~~i~iTH~H~DHiGalp~l~~~~~~-pIY~s~~t~~-------------li~~~~~~~~~~~~~~~--~~i~~~~ 127 (559) . ++|+++||||+|.||+|+++.|+..+.+ .||+++.+.. ..+..+.... ...... .....+. T Consensus 74 gI~~ID~vIiTH~H~DHigGl~~ll~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 152 (547) T 2bib_A 74 SVQKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTAT-ETGVSVIQNITQGDA 152 (547) T ss_dssp TCCCBSCEECCCSCHHHHTTHHHHHHHSCBSEEECCCCCGGGBSCGGGCTTHHHHHHHHHHHHH-HTTCEEECSCCTTTT T ss_pred CCCCCCEEEECCCCHHHHCCHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCC T ss_conf 9893799999999605769799999658787899799752222100123444799999999998-749974221257981 Q ss_pred EEEECCEEEEEEECCCC-------------CCCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEE Q ss_conf 57763489999855677-------------77653567987681799833402467766542389889986087882999 Q gi|254780869|r 128 KVDVGAFSIESVRVNHS-------------IPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILAL 194 (559) Q Consensus 128 ~~~~g~~~v~~~~~~Hs-------------ip~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~L 194 (559) .+.+++..++.+...+. -..|+++.|+.++.++++|||.- .....+.+.......+|+| T Consensus 153 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~N~~Sivl~i~~~g~~~LftGD~~--------~~~e~~ll~~~~~~~~DvL 224 (547) T 2bib_A 153 HFQFGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLD--------NVHGAEDKYGPLIGKVDLM 224 (547) T ss_dssp EEEETTEEEEEESCSCCBCTTSCBCCBSSGGGGCCEEEEEETTEEEEECTTCC--------STTSHHHHHHHHHCCCSEE T ss_pred EEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCC--------HHHHHHHHHCCCCCCEEEE T ss_conf 79708816999367545544333445789887768999999999999997898--------0567998646888854699 Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHH--HHHHHHHHHHHHCCEEEEECH Q ss_conf 96356457888777787999999999862798399994147789--999999999871886998448 Q gi|254780869|r 195 MCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVS--RIRSIIDIAEQIGRKIVLLGS 259 (559) Q Consensus 195 i~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~--Ri~~i~~~a~~~~R~v~i~Gr 259 (559) -+- .+-.|.....+.+.+.+ + +..+|++|=+.|-. --.++++..++.|-++.-..| T Consensus 225 kv~-------~HHGS~~s~s~~fl~~v-~-P~~~viS~g~~n~~~hP~~~~l~~l~~~gi~~~~t~~ 282 (547) T 2bib_A 225 KFN-------HHHDTNKSNTKDFIKNL-S-PSLIVQTSDSLPWKNGVDSEYVNWLKERGIERINAAS 282 (547) T ss_dssp ECT-------TTTBCSSSSCHHHHHHH-C-CSEEEESBSSCSBSSSBCHHHHHHHHTTTCEEEECBC T ss_pred ECC-------CCCCCCCCCCHHHHHHC-C-CCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEECC T ss_conf 968-------98898867679899754-9-9799992787777889898999999987997998525 No 22 >3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} Probab=99.44 E-value=1e-12 Score=108.89 Aligned_cols=132 Identities=17% Similarity=0.217 Sum_probs=96.7 Q ss_pred CCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHH-HCCCEEEEECCCCCCCCCHHHHHHHCCC Q ss_conf 834660699995177786489997767678887675028707957987664-1246899605430121607888986299 Q gi|254780869|r 15 GEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER-KNLMAIFITHAHEDHYGALHDLWSFLHV 93 (559) Q Consensus 15 ~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~-~~i~~i~iTH~H~DHiGalp~l~~~~~~ 93 (559) .+...|++++. .++..+|||.|....... .+ .++++++. .+|++|++||+|.||+|+++++... ++ T Consensus 27 ~~~~~N~~~i~----~~~~~vlIDtg~~~~~~~-----~l---~~~i~~~~~~~i~~ii~TH~H~DH~gG~~~~~~~-~~ 93 (219) T 3l6n_A 27 KEYSANSMYLV----TKKGVVLFDVPWEKVQYQ-----SL---MDTIKKRHNLPVVAVFATHSHDDRAGDLSFFNNK-GI 93 (219) T ss_dssp EEEEEEEEEEE----ETTEEEEESCCSSGGGHH-----HH---HHHHHHHHSCCEEEEECSSSSTTTTCCTHHHHHT-TC T ss_pred CEEEEEEEEEE----ECCEEEEEECCCCHHHHH-----HH---HHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHC-CC T ss_conf 37700599999----899999992989989999-----99---9999860299638999799995433868999628-98 Q ss_pred CEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEEC--CCCCCCCCEEEEEECCCEEEECCCCEE Q ss_conf 779299999999999985488655622551755557763489999855--677776535679876817998334024 Q gi|254780869|r 94 PVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV--NHSIPETMALVIRSPVGNIVHTGDWKL 168 (559) Q Consensus 94 pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~--~Hsip~a~~~~I~t~~g~i~ytGDfk~ 168 (559) ++|+++.+..+++.. ........++.+.++++|+.+++.+.+ +| .||+.++.+ |+.+++||||+-+ T Consensus 94 ~i~a~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~v~~~~pgH-t~g~~~v~~--~~~~vlf~GD~~~ 161 (219) T 3l6n_A 94 KTYATAKTNEFLKKD------GKATSTEIIKTGKPYRIGGEEFVVDFLGEGH-TADNVVVWF--PKYNVLDGGCLVK 161 (219) T ss_dssp EEEECHHHHHHHHHT------TCCCCSEECCTTSEEEETTEEEEEECCCCSS-SSSCCEEEE--TTTTEEEEETTSC T ss_pred EEEEHHHHHHHHHCC------CCCCCEEEECCCCEEEECCEEEEEEECCCCC-CCCCEEEEE--CCCCEEEEECCCC T ss_conf 899602222332101------3344128823885786288568997247999-998589994--7899999928377 No 23 >2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Probab=99.44 E-value=3.6e-12 Score=105.02 Aligned_cols=153 Identities=17% Similarity=0.167 Sum_probs=86.7 Q ss_pred EEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC-------- Q ss_conf 069999517778648999776767888767502870795798766412468996054301216078889862-------- Q gi|254780869|r 20 NMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFL-------- 91 (559) Q Consensus 20 N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~-------- 91 (559) +.+.+.|.. +.+|||||-+. ..-|.....++++|||||.|.||++++|.++... T Consensus 11 ~~t~~~~~~----~~iLiD~G~g~--------------~~~l~~~~~~i~~IfiTH~H~DHi~gl~~l~~~~~~~~~~~~ 72 (280) T 2e7y_A 11 FSTWIYYSP----ERILFDAGEGV--------------STTLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDRE 72 (280) T ss_dssp TEEEEEEGG----GTEEEEECTTH--------------HHHHGGGGGGCCEEECSCCCHHHHTTHHHHHHHHHHHSGGGC T ss_pred CEEEEEECC----CEEEEECCHHH--------------HHHHCCCCCCCCEEEEECCCHHHHCCHHHHHHHHHHHCCCCC T ss_conf 379999899----87999897449--------------998555522387899917863564679999998743103788 Q ss_pred -CCCEECCHHHHHHHHHHHHH----CCCCCCCCEEEECCCCEEEE-----CCEEEEEEECCCCCCC-CCEEEEEE----- Q ss_conf -99779299999999999985----48865562255175555776-----3489999855677776-53567987----- Q gi|254780869|r 92 -HVPVYASPFAIGLLEAKRVY----ERVSKKIPCISFQAGDKVDV-----GAFSIESVRVNHSIPE-TMALVIRS----- 155 (559) Q Consensus 92 -~~pIY~s~~t~~li~~~~~~----~~~~~~~~~~~i~~~~~~~~-----g~~~v~~~~~~Hsip~-a~~~~I~t----- 155 (559) .+.+|++..+..+.+..... ...........+........ ..+++..+++.|..|. ++++.+.. T Consensus 73 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~~~~~~~~~ 152 (280) T 2e7y_A 73 KPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAGGFKRYVQPFRTKHVSSEVSFGYHIFEVRRKL 152 (280) T ss_dssp CCEEEEEETTCHHHHHHHHHHHHHCGGGTTTEEEEEECTTCCEECCCSSCSCEEEEEEECCSCSSSCCEEEEEEEEEEEE T ss_pred CCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCC T ss_conf 76145054468999999987530034445542101123554034203666633799886213567664046650245432 Q ss_pred ----------------------------CCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCC Q ss_conf ----------------------------6817998334024677665423898899860878829999635645788 Q gi|254780869|r 156 ----------------------------PVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMRE 204 (559) Q Consensus 156 ----------------------------~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~ 204 (559) .+..+.|+||... ++. .+. +++|+|++|+|+.... T Consensus 153 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~gD~~~---------~~~-~~~----~~~d~li~E~~~~~~~ 215 (280) T 2e7y_A 153 KKEFQGLDSKEISRLVKEKGRDFVTEEYHKKVLTISGDSLA---------LDP-EEI----RGTELLIHECTFLDAR 215 (280) T ss_dssp CGGGTTCCHHHHHHHHHHHCTGGGEEEEEEEEEEECCSCSS---------CCH-HHH----TTCSCEEEECCBC--- T ss_pred CHHHCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCC---------CCH-HHH----CCCCEEEEECCCHHHH T ss_conf 12223577410000111056303420125761233687777---------886-782----7887899974643345 No 24 >2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus HB8} Probab=99.43 E-value=1.9e-13 Score=114.16 Aligned_cols=136 Identities=15% Similarity=0.194 Sum_probs=92.5 Q ss_pred CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH---HHCCCEEEEECCCCCCCCCHHHHHHHCCCC Q ss_conf 66069999517778648999776767888767502870795798766---412468996054301216078889862997 Q gi|254780869|r 18 GMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE---RKNLMAIFITHAHEDHYGALHDLWSFLHVP 94 (559) Q Consensus 18 G~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~---~~~i~~i~iTH~H~DHiGalp~l~~~~~~p 94 (559) +-|||+++ .++.++|||||...+... +.+ ...|.+. .++|++|++||+|.||+|+.+++ .+.++| T Consensus 21 ~vN~yli~----~~~~~vlIDtG~~~~~~~----~~l---~~~l~~~g~~~~~I~~Vi~TH~H~DH~Gg~~~l-~~~g~~ 88 (317) T 2zo4_A 21 TVNLYLLQ----GAGEVALVDTALGTRAAR----GAL---ELHLAELGLCFQDVKTILLTHHHPDHYGLSGFF-EGLGAR 88 (317) T ss_dssp EEEEEEEE----ETTEEEEECCCCSSHHHH----HHH---HHHHHHTTCCGGGCCEEEESCCSHHHHTTHHHH-HHTTCE T ss_pred CEEEEEEE----ECCEEEEEECCCCCHHHH----HHH---HHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHH-HHCCCC T ss_conf 67999999----899899998999977899----999---999997499977724999799882222219999-745998 Q ss_pred EECCHHHHHHHHHH--------------HHHCC-------------------CCCCCCEEEECCCCEEEECCEEEEEEEC Q ss_conf 79299999999999--------------98548-------------------8655622551755557763489999855 Q gi|254780869|r 95 VYASPFAIGLLEAK--------------RVYER-------------------VSKKIPCISFQAGDKVDVGAFSIESVRV 141 (559) Q Consensus 95 IY~s~~t~~li~~~--------------~~~~~-------------------~~~~~~~~~i~~~~~~~~g~~~v~~~~~ 141 (559) ||+++.+...+... +...+ ..+......+..++.+++|+.+++++++ T Consensus 89 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~gg~~~~vi~~ 168 (317) T 2zo4_A 89 VFLHEEEFARGHRFWREPEAFAEASWRLFLDHGTPEGALQGIRETVEKTRERVHPPQNPLPLRDGEALEVAGKRLRVLWT 168 (317) T ss_dssp EEEEGGGTTTHHHHHHCTTTSHHHHHHHHHHTTCCC-------CHHHHHHTTCCCCSSCEEECTTCEEEETTEEEEEEEC T ss_pred EECCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEECCCCEEECCCC T ss_conf 31378888888765405055678888765421783333333443201235555688886794478556438845845778 Q ss_pred -CCCCCCCCEEEEEECCCEEEECCCCEE Q ss_conf -677776535679876817998334024 Q gi|254780869|r 142 -NHSIPETMALVIRSPVGNIVHTGDWKL 168 (559) Q Consensus 142 -~Hsip~a~~~~I~t~~g~i~ytGDfk~ 168 (559) +| .||++++.+ ++.+++|+||.-+ T Consensus 169 PGH-t~~~~~~~~--~~~~vlf~GD~l~ 193 (317) T 2zo4_A 169 PGH-ADGHAAFYL--EEEGVLLAGDALL 193 (317) T ss_dssp CSS-STTCEEEEE--TTTTEEEEETSCC T ss_pred CCC-CCCCEEEEE--CCCCEEEEECEEC T ss_conf 878-998789998--6888578704863 No 25 >1y44_A Ribonuclease Z; zinc-dependent metal hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Probab=99.42 E-value=4.1e-11 Score=97.40 Aligned_cols=139 Identities=20% Similarity=0.275 Sum_probs=94.0 Q ss_pred EEEEEECCCC-CCCCCE--EEEEEECCCCCCEEEEEECCCCCCCC-CCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCC Q ss_conf 3999940686-834660--69999517778648999776767888-7675028707957987664124689960543012 Q gi|254780869|r 5 ELVFLPLGGV-GEIGMN--MALYGYGSPSSRKWIMIDCGVSFPKD-DLPGVDLVFPDITFIMKERKNLMAIFITHAHEDH 80 (559) Q Consensus 5 ~i~~~~lGG~-~eiG~N--~~~~~~~~~~~~~~iiiD~G~~fp~~-~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DH 80 (559) +|.|+--||. --.++| |+++.+. +.+++.+|||||-.+-.. ...|++ ..++++|||||.|.|| T Consensus 2 kv~~LGtg~~~p~~~r~~s~~~v~~~-~~~~~~iLiD~G~g~~~~l~~~~~~------------~~~i~~I~iTH~H~DH 68 (320) T 1y44_A 2 ELLFLGTGAGIPAKARNVTSVALKLL-EERRSVWLFDCGEATQHQMLHTTIK------------PRKIEKIFITHMHGDH 68 (320) T ss_dssp EEEEEECBSSSCCSSCCBCEEEEEET-TTTSEEEEECCCTTHHHHHTTSSCC------------GGGEEEEECSBCCGGG T ss_pred EEEEEEECCCCCCCCCCCCEEEEEEE-ECCCCEEEEECCHHHHHHHHHCCCC------------HHHCCEEEECCCCHHH T ss_conf 89999778997999997688999998-0699489994977999999983999------------6676689972445665 Q ss_pred CCCHHHHHHHC-------CCCEECCHHHHHHHHHHHHHCCC--CCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEE Q ss_conf 16078889862-------99779299999999999985488--6556225517555577634899998556777765356 Q gi|254780869|r 81 YGALHDLWSFL-------HVPVYASPFAIGLLEAKRVYERV--SKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMAL 151 (559) Q Consensus 81 iGalp~l~~~~-------~~pIY~s~~t~~li~~~~~~~~~--~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~ 151 (559) ++++|+++... .++||+.+.+...+......... .....+.++..+...+.+.+.+.++++.|... +.++ T Consensus 69 ~~Gl~~~~~~~~~~~~~~~~~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~-~~~~ 147 (320) T 1y44_A 69 VYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKTHLTYPLAIQEIEEGIVFEDDQFIVTAVSVIHGVE-AFGY 147 (320) T ss_dssp TTTHHHHHHHHHHTTCCSCEEEEESTTHHHHHHHHHHHTTCCCSSCEEEEECCSEEEEECSSEEEEEEECBSSSS-BEEE T ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCEEECCCEEEEEEECCCCCC-CCCC T ss_conf 167135555555316776542347701788998766532025566531255267740104632576541013555-3343 Q ss_pred EEEECC Q ss_conf 798768 Q gi|254780869|r 152 VIRSPV 157 (559) Q Consensus 152 ~I~t~~ 157 (559) .+..+. T Consensus 148 ~~~~~~ 153 (320) T 1y44_A 148 RVQEKD 153 (320) T ss_dssp EEEECC T ss_pred CCEECC T ss_conf 301025 No 26 >2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Probab=99.40 E-value=1.2e-12 Score=108.46 Aligned_cols=140 Identities=25% Similarity=0.393 Sum_probs=92.7 Q ss_pred EEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHH Q ss_conf 99940686834660699995177786489997767678887675028707957987664124689960543012160788 Q gi|254780869|r 7 VFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHD 86 (559) Q Consensus 7 ~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~ 86 (559) +++++. .|..+.|||+++ .++..+|||+|.. .+.+ .+++++...+++.|++||+|.||+|++++ T Consensus 2 ~i~~~~-~Gp~~~N~ylI~----~~~~~ilID~G~~--------~~~~---~~~l~~~~~~~~~vi~TH~H~DH~~g~~~ 65 (207) T 2zwr_A 2 RVFPVT-LGPLQENAYLVE----TGEGPVLIDPGDE--------PEKL---LALFQTTGLIPLAILLTHAHFDHVGAVAP 65 (207) T ss_dssp EEEEEE-ETTTTEEEEEEE----ETTEEEEECCCSC--------HHHH---HHHHHHHTCCCSCEECSCCCGGGTTTHHH T ss_pred EEEEEE-ECCHHCEEEEEE----ECCEEEEEECCCC--------HHHH---HHHHHHCCCCCEEEEECCCCHHHHCCHHH T ss_conf 899997-088118899999----8998999949869--------9999---99999879972499979997667521999 Q ss_pred HHHHCCCCEECCHHHHHHHHHHH---HHCCCCC---CCCEEEECCCCEEEECCEEEEEEEC-CCCCCCCCEEEEEECCCE Q ss_conf 89862997792999999999999---8548865---5622551755557763489999855-677776535679876817 Q gi|254780869|r 87 LWSFLHVPVYASPFAIGLLEAKR---VYERVSK---KIPCISFQAGDKVDVGAFSIESVRV-NHSIPETMALVIRSPVGN 159 (559) Q Consensus 87 l~~~~~~pIY~s~~t~~li~~~~---~~~~~~~---~~~~~~i~~~~~~~~g~~~v~~~~~-~Hsip~a~~~~I~t~~g~ 159 (559) +...+..++|.++.....+.... ....... ......++.+..+ . .++.+.+ +| .||+.++.+ |+++ T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~--~~~vi~~PGH-t~g~~~~~~--~~~~ 138 (207) T 2zwr_A 66 LVEALDLPVYLHPLDLPLYEGADLAARAWGLAIPKPPLPVRPLEEGMRL--F--GFQVLHLPGH-SPGHVAFYD--PEGA 138 (207) T ss_dssp HHHHHCCCEEECGGGHHHHHTHHHHHHHTTCCCCCCCSCCEECCTTCEE--T--TEEEEECCSS-STTCEEEEE--TTTT T ss_pred HHHHHCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEE--E--EEEEECCCCC-CCCCEEEEE--CCCC T ss_conf 9998699489613322000362022101364323675430002245157--7--7998324887-878479998--7789 Q ss_pred EEECCCCEEC Q ss_conf 9983340246 Q gi|254780869|r 160 IVHTGDWKLD 169 (559) Q Consensus 160 i~ytGDfk~d 169 (559) ++||||+-+. T Consensus 139 ~lf~GD~~~~ 148 (207) T 2zwr_A 139 QVFSGDLLFR 148 (207) T ss_dssp EEEEETSEET T ss_pred EEEECCEECC T ss_conf 8886357036 No 27 >1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER assymmetric UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Probab=99.39 E-value=5e-12 Score=103.97 Aligned_cols=137 Identities=13% Similarity=0.143 Sum_probs=97.2 Q ss_pred CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH---HHCCCEEEEECCCCCCCCCHHHHHHHCCCC Q ss_conf 66069999517778648999776767888767502870795798766---412468996054301216078889862997 Q gi|254780869|r 18 GMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE---RKNLMAIFITHAHEDHYGALHDLWSFLHVP 94 (559) Q Consensus 18 G~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~---~~~i~~i~iTH~H~DHiGalp~l~~~~~~p 94 (559) +-|||++. .++..+|||||.. . +. +.+ .++|.+. ..+|+.||+||.|.||+|+++++....+++ T Consensus 24 ~~~~~li~----~~~~~iLID~G~~--~-~~---~~i---~~~l~~~g~~~~~i~~il~TH~H~DH~gg~~~~~~~~~a~ 90 (263) T 1k07_A 24 DLASYLIV----TPRGNILINSDLE--A-NV---PMI---KASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQTKAK 90 (263) T ss_dssp SBCCEEEE----ETTEEEEECCCCG--G-GH---HHH---HHHHHHTTCCGGGEEEEECSSSSHHHHTTHHHHHHHHCCE T ss_pred CEEEEEEE----ECCEEEEEECCCC--C-CH---HHH---HHHHHHCCCCCCCEEEEEECCCCHHHHCHHHHHHHHCCCE T ss_conf 90999999----8998999939895--2-09---999---9999976999534269997898701114199998753997 Q ss_pred EECCHHHHHHHHHHHHHCC---------CCCCCCEEEECCCCEEEECCEEEEEEEC-CCCCCCCCEEEEEECC----CEE Q ss_conf 7929999999999998548---------8655622551755557763489999855-6777765356798768----179 Q gi|254780869|r 95 VYASPFAIGLLEAKRVYER---------VSKKIPCISFQAGDKVDVGAFSIESVRV-NHSIPETMALVIRSPV----GNI 160 (559) Q Consensus 95 IY~s~~t~~li~~~~~~~~---------~~~~~~~~~i~~~~~~~~g~~~v~~~~~-~Hsip~a~~~~I~t~~----g~i 160 (559) ||+++.+...+........ .........+..++++++|+.+++++.+ +| .||+.++.+...+ +.+ T Consensus 91 i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~PGH-t~g~~~~~~~~~~~~~~~~~ 169 (263) T 1k07_A 91 YMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGTVLTAHLTPGH-TRGCTTWTMKLKDHGKQYQA 169 (263) T ss_dssp EEEEHHHHHHHHTTTTTCTTTTTCGGGCCCCCCCSEEECTTCEEEETTEEEEEEECCSS-STTCEEEEEEEEETTEEEEE T ss_pred EEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEECCCEEEEEEECCCC-CCCCEEEEEECCCCCEECCE T ss_conf 99940587777521110012202333466777662574167467309857999957887-87789999981678538789 Q ss_pred EECCCCEE Q ss_conf 98334024 Q gi|254780869|r 161 VHTGDWKL 168 (559) Q Consensus 161 ~ytGDfk~ 168 (559) +|+||+-+ T Consensus 170 ~~~gd~~~ 177 (263) T 1k07_A 170 VIIGSIGV 177 (263) T ss_dssp EEECCCCC T ss_pred EEECCCCC T ss_conf 99898447 No 28 >2gmn_A Metallo-beta-lactamase; hydrolase; 1.40A {Bradyrhizobium japonicum usda 110} SCOP: d.157.1.1 Probab=99.39 E-value=2.3e-12 Score=106.45 Aligned_cols=128 Identities=20% Similarity=0.249 Sum_probs=90.9 Q ss_pred CCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH---HHCCCEEEEECCCCCCCCCHHHHHHHC Q ss_conf 83466069999517778648999776767888767502870795798766---412468996054301216078889862 Q gi|254780869|r 15 GEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE---RKNLMAIFITHAHEDHYGALHDLWSFL 91 (559) Q Consensus 15 ~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~---~~~i~~i~iTH~H~DHiGalp~l~~~~ 91 (559) |..|.|+|+++. .+..+|||+|. +.+ .+.+ ...|++. ..+|+.|++||+|.||+||+++|...+ T Consensus 31 g~~~~n~ylI~~----~~~~iLID~G~--~~~----~~~i---~~~l~~~g~~~~~v~~ii~TH~H~DH~gg~~~l~~~~ 97 (274) T 2gmn_A 31 GTDGIAVYVIKT----SQGLILMDTAM--PQS----TGMI---KDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKET 97 (274) T ss_dssp CCSSSCCEEEEE----TTEEEEECCCC--GGG----HHHH---HHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHHH T ss_pred CCCCEEEEEEEE----CCEEEEEECCC--CCH----HHHH---HHHHHHCCCCCHHEEEEEECCCCCCCCCCHHHHHHHC T ss_conf 999889999998----99979990989--434----9999---9999975998133039996989963506255657753 Q ss_pred CCCEECCHHHHHHHHHHHHHCCCC-------CCCCEEEECCCCEEEECCEEEEEEEC-CCCCCCCCEEEEEEC Q ss_conf 997792999999999999854886-------55622551755557763489999855-677776535679876 Q gi|254780869|r 92 HVPVYASPFAIGLLEAKRVYERVS-------KKIPCISFQAGDKVDVGAFSIESVRV-NHSIPETMALVIRSP 156 (559) Q Consensus 92 ~~pIY~s~~t~~li~~~~~~~~~~-------~~~~~~~i~~~~~~~~g~~~v~~~~~-~Hsip~a~~~~I~t~ 156 (559) ++|||+++.+..+++......... .......++.++.+++|+.+++++.+ +| .||++++.+... T Consensus 98 ~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~g~~~~lg~~~i~~i~tpGH-t~g~~~~~~~~~ 169 (274) T 2gmn_A 98 GAQLVAGERDKPLLEGGYYPGDEKNEDLAFPAVKVDRAVKEGDRVTLGDTTLTAHATPGH-SPGCTSWEMTVK 169 (274) T ss_dssp CCEEEEEGGGHHHHHHTCCTTCTTCGGGCCCCCCCSEEECTTCEEEETTEEEEEEECCSS-STTCEEEEEEEE T ss_pred CCEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCCEEEEECCCC-CCCCEEEEEECC T ss_conf 984875010104443233332211233466887640894057534227641357737988-998789998645 No 29 >1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Probab=99.38 E-value=6e-12 Score=103.41 Aligned_cols=132 Identities=17% Similarity=0.235 Sum_probs=94.1 Q ss_pred CCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH-HHCCCEEEEECCCCCCCCCHHHHHHHCCCCE Q ss_conf 466069999517778648999776767888767502870795798766-4124689960543012160788898629977 Q gi|254780869|r 17 IGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE-RKNLMAIFITHAHEDHYGALHDLWSFLHVPV 95 (559) Q Consensus 17 iG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~-~~~i~~i~iTH~H~DHiGalp~l~~~~~~pI 95 (559) .+.|++++. .++..+|||+|........ + .+++.+. ..++++||+||+|.||+||+.++ .+..+++ T Consensus 25 ~~~N~~~i~----~~~~~iliD~~~~~~~~~~-----l---~~~i~~~~~~~i~~vi~TH~H~DH~~G~~~~-~~~~~~i 91 (223) T 1m2x_A 25 YAANAVYLV----TDKGVVVIDCPWGEDKFKS-----F---TDEIYKKHGKKVIMNIATHSHDDRAGGLEYF-GKIGAKT 91 (223) T ss_dssp EEEEEEEEE----ETTEEEEESCCSSGGGHHH-----H---HHHHHHHHCCCEEEEECSSSSTTTTTTHHHH-HHTTCEE T ss_pred ECCEEEEEE----ECCEEEEEECCCCHHHHHH-----H---HHHHHHHHCCCEEEEEECCCCCCCCCCHHHH-HHCCCEE T ss_conf 766799999----8998999979999899999-----9---9999884199758999679997510619999-8689979 Q ss_pred ECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEE--CCCCCCCCCEEEEEECCCEEEECCCCEECC Q ss_conf 929999999999998548865562255175555776348999985--567777653567987681799833402467 Q gi|254780869|r 96 YASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVR--VNHSIPETMALVIRSPVGNIVHTGDWKLDD 170 (559) Q Consensus 96 Y~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~--~~Hsip~a~~~~I~t~~g~i~ytGDfk~d~ 170 (559) |+++.+..++... +. ......++.+..+++|+.+++.+. -+|+ ||+.. +..|..+++||||+-++. T Consensus 92 ~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~lg~~~i~~~~~~pgHt-~~~~~--~~~p~~~vlf~GD~~~~~ 159 (223) T 1m2x_A 92 YSTKMTDSILAKE----NK--PRAQYTFDNNKSFKVGKSEFQVYYPGKGHT-ADNVV--VWFPKEKVLVGGCIIKSA 159 (223) T ss_dssp EEEHHHHHHHHHT----TC--CCCSEEESSCEEEEETTEEEEEECCCSSSS-SSCCE--EEETTTTEEEEETTSCCT T ss_pred EECCCHHHHHHCC----CC--CCCCCCCCCCEEEEECCEEEEEECCCCCCC-CCCEE--EEECCCCEEEECCEECCC T ss_conf 9612044444203----66--567412356338998998999824679999-98689--994799999982768889 No 30 >2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Probab=99.36 E-value=2e-12 Score=106.77 Aligned_cols=141 Identities=21% Similarity=0.325 Sum_probs=95.7 Q ss_pred EEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH---HHCCCEEEEECCCCCCCCCH Q ss_conf 994068683466069999517778648999776767888767502870795798766---41246899605430121607 Q gi|254780869|r 8 FLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE---RKNLMAIFITHAHEDHYGAL 84 (559) Q Consensus 8 ~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~---~~~i~~i~iTH~H~DHiGal 84 (559) +..+|..+ -|||++.- .++.++|||||.. .+. +.+ ...|.+. .++|+.|++||+|.||+|++ T Consensus 16 ~~~~g~~~---~~~yll~~---g~~~~~lIDtG~~--~~~----~~~---~~~l~~~~~~~~~I~~ii~TH~H~DH~gg~ 80 (303) T 2vw8_A 16 LCLLGDVQ---VPVFLLRL---GEASWALVEGGIS--RDA----ELV---WADLCRWVADPSQVHYWLITHKHYDHCGLL 80 (303) T ss_dssp EEEESCTT---SCEEEEEE---ETTEEEEECCCCG--GGH----HHH---HHHHHHHCSCGGGEEEEECCCCSTTTTTTH T ss_pred EEECCCCC---CEEEEEEE---CCCCEEEEECCCC--CHH----HHH---HHHHHHHCCCCHHCCEEEECCCCCCCCCCH T ss_conf 33137675---27999997---9986899959898--529----999---999998289824279899590998650863 Q ss_pred HHHHHHC-CCCEECCHHHHHHHHHH--------HHHCC-----------CCCCCCEEEECCCCEEEECC-EEEEEEEC-C Q ss_conf 8889862-99779299999999999--------98548-----------86556225517555577634-89999855-6 Q gi|254780869|r 85 HDLWSFL-HVPVYASPFAIGLLEAK--------RVYER-----------VSKKIPCISFQAGDKVDVGA-FSIESVRV-N 142 (559) Q Consensus 85 p~l~~~~-~~pIY~s~~t~~li~~~--------~~~~~-----------~~~~~~~~~i~~~~~~~~g~-~~v~~~~~-~ 142 (559) ++|...+ +++||+++.+...+... ..... .........+..++.+++|+ ..++++++ + T Consensus 81 ~~l~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~lg~~~~~~~i~~PG 160 (303) T 2vw8_A 81 PYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQRLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHG 160 (303) T ss_dssp HHHGGGCTTCEEEEEHHHHHHTTCHHHHHHHHHHHHHTCCTTCCCCCCCCGGGSCEEEECTTCEEEEETTEEEEEEECTT T ss_pred HHHHHCCCCCEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEECCCEEEECCCCCC T ss_conf 45542167866994488999873630134577777654322102455555666785694799989857822673266799 Q ss_pred CCCCCCCEEEEEECCCEEEECCCC Q ss_conf 777765356798768179983340 Q gi|254780869|r 143 HSIPETMALVIRSPVGNIVHTGDW 166 (559) Q Consensus 143 Hsip~a~~~~I~t~~g~i~ytGDf 166 (559) | .||++++. .+..+++|+||. T Consensus 161 H-t~g~~~~~--~~~~~~lf~GD~ 181 (303) T 2vw8_A 161 H-SDDHVVFY--DVRRRRLFCGDA 181 (303) T ss_dssp S-STTCEEEE--ETTTTEEEEETT T ss_pred C-CCCCCCEE--ECCCCEEEECCC T ss_conf 6-99875637--179999998283 No 31 >2whg_A VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BETA-alpha fold; HET: FLC; 1.90A {Pseudomonas aeruginosa} PDB: 2wrs_A* 1ko3_A 1ko2_A Probab=99.32 E-value=5.5e-12 Score=103.70 Aligned_cols=133 Identities=20% Similarity=0.203 Sum_probs=91.5 Q ss_pred CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH-HHCCCEEEEECCCCCCCCCHHHHHHHCCCCEE Q ss_conf 66069999517778648999776767888767502870795798766-41246899605430121607888986299779 Q gi|254780869|r 18 GMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE-RKNLMAIFITHAHEDHYGALHDLWSFLHVPVY 96 (559) Q Consensus 18 G~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~-~~~i~~i~iTH~H~DHiGalp~l~~~~~~pIY 96 (559) ..|||++. .++.++|||+|........ + .+++.+. ..+|+.|++||+|.||+|+++++.. .++++| T Consensus 37 ~~N~~~i~----~~~~~vlIDtg~~~~~~~~-----l---~~~i~~~~~~~v~~vi~TH~H~DH~gg~~~~~~-~~~~~~ 103 (230) T 2whg_A 37 PSNGLIVR----DGDELLLIDTAWGAKNTAA-----L---LAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRA-AGVATY 103 (230) T ss_dssp EEEEEEEE----ETTEEEEESCCSSHHHHHH-----H---HHHHHHHTCSCEEEEECSSSSHHHHTTHHHHHH-TTCEEE T ss_pred CCEEEEEE----ECCEEEEEECCCCHHHHHH-----H---HHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHH-CCCEEE T ss_conf 11899999----6999999979899799999-----9---999998319973899977998200160999975-899499 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEE Q ss_conf 299999999999985488655622551755557763489999855677776535679876817998334024 Q gi|254780869|r 97 ASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKL 168 (559) Q Consensus 97 ~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~ 168 (559) +++.+..+++..... ......-.....++.+.+|++++....-+| .||+..+. .|+.+++||||.-+ T Consensus 104 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~pGH-t~g~~~~~--~~~~~vlf~GD~v~ 170 (230) T 2whg_A 104 ASPSTRRLAEAEGNE--IPTHSLEGLSSSGDAVRFGPVELFYPGAAH-STDNLVVY--VPSANVLYGGCAVH 170 (230) T ss_dssp ECHHHHHHHHHHTCC--CCSEECCSCSSTTCEEEETTEEEECCCSSS-STTCCEEE--ETTTTEEEEETTSC T ss_pred ECHHHHHHHHHCCCC--CCCCCCCEEECCCCEEEECCEEEEEECCCC-CCCCEEEE--ECCCCEEEECCEEC T ss_conf 878999999852766--764342035036866886786899837999-98979999--86889999877874 No 32 >2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Probab=99.29 E-value=2e-11 Score=99.65 Aligned_cols=128 Identities=23% Similarity=0.179 Sum_probs=93.5 Q ss_pred CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCEEC Q ss_conf 66069999517778648999776767888767502870795798766412468996054301216078889862997792 Q gi|254780869|r 18 GMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYA 97 (559) Q Consensus 18 G~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~~~pIY~ 97 (559) |-++|++.-..+..++.++||.|-.. ++. ..++++++.-++.+||+||+|.||+++++.|...+..++|. T Consensus 14 ~~~sYli~d~~~~t~eaivIDP~~~~-------~~~---~~~~i~~~~~~i~~Il~TH~H~DH~~g~~~l~~~~~~~~~~ 83 (245) T 2gcu_A 14 STFTYLLADVSHPDKPALLIDPVDKT-------VDR---DLKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSV 83 (245) T ss_dssp TEEEEEEEETTSTTCEEEEESCBGGG-------HHH---HHHHHHHHTCEEEEEECSSCCSSSCBSHHHHHHHSTTCEEE T ss_pred CEEEEEEEECCCCCCEEEEEECCCCC-------HHH---HHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 30899998588899989999299875-------899---99999986996789983589768871399999764154100 Q ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEE----ECCCEEEECCCCEE Q ss_conf 999999999999854886556225517555577634899998556777765356798----76817998334024 Q gi|254780869|r 98 SPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIR----SPVGNIVHTGDWKL 168 (559) Q Consensus 98 s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~----t~~g~i~ytGDfk~ 168 (559) .... .....-..++.++.+++|+++++++.+..-.||++.|.+. .+...++||||.-| T Consensus 84 ~~~~-------------~~~~~d~~~~dgd~~~iG~~~l~vi~TPGHT~gsv~~~~~d~~~~~~~~~lFtGDtLF 145 (245) T 2gcu_A 84 ISKA-------------SGSKADLFLEPGDKVSIGDIYLEVRATPGHTAGCVTYVTGEGADQPQPRMAFTGDAVL 145 (245) T ss_dssp EEGG-------------GCCCCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEECCSTTSCSSCEEEEETTSB T ss_pred CCCC-------------CCCCCCEEECCCCCCEECCEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEECCCEE T ss_conf 0124-------------6766756614887214898999999778988633899943667777663799547605 No 33 >2yz3_A Metallo-beta-lactamase; enzyme-inhibitor complex, hydrolase; HET: M5P; 2.30A {Pseudomonas putida} SCOP: d.157.1.1 Probab=99.29 E-value=7.3e-12 Score=102.79 Aligned_cols=134 Identities=19% Similarity=0.207 Sum_probs=91.7 Q ss_pred CCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH-HHCCCEEEEECCCCCCCCCHHHHHHHCCCCE Q ss_conf 466069999517778648999776767888767502870795798766-4124689960543012160788898629977 Q gi|254780869|r 17 IGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE-RKNLMAIFITHAHEDHYGALHDLWSFLHVPV 95 (559) Q Consensus 17 iG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~-~~~i~~i~iTH~H~DHiGalp~l~~~~~~pI 95 (559) .+.|++++. .++..++||.|..-.. .+.+ .+++++. ..+|+.||+||+|.||+|++.++.. .++|+ T Consensus 67 ~~~N~~~v~----~~~~~vlIDtg~~~~~-----~~~l---~~~i~~~~~~pi~~vi~TH~H~DH~gG~~~~~~-~~~~v 133 (266) T 2yz3_A 67 YPSNGLIVR----DGDELLLIDTAWGAKN-----TAAL---LAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRA-AGVAT 133 (266) T ss_dssp EEEEEEEEE----ETTEEEEESCCSSHHH-----HHHH---HHHHHHHTCSCEEEEECSSSSHHHHTTHHHHHH-TTCEE T ss_pred EEEEEEEEE----ECCEEEEEECCCCHHH-----HHHH---HHHHHHHHCCCEEEEEECCCCHHHCCCHHHHHC-CCCEE T ss_conf 612799999----8999999909999899-----9999---999998439972799979998100087556520-69769 Q ss_pred ECCHHHHHHHHHHHHHCCCCCCCC-EEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEEC Q ss_conf 929999999999998548865562-25517555577634899998556777765356798768179983340246 Q gi|254780869|r 96 YASPFAIGLLEAKRVYERVSKKIP-CISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLD 169 (559) Q Consensus 96 Y~s~~t~~li~~~~~~~~~~~~~~-~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~d 169 (559) |+++.|..+++..- ...+... -.....++.+.+|++++..+.-+|+ ||... +..|+.+++||||.-++ T Consensus 134 ~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~v~~~~~gpgHt-~~~~~--v~~p~~~vLf~GD~v~~ 202 (266) T 2yz3_A 134 YASPSTRRLAEVEG---NEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHS-TDNLV--VYVPSASVLYGGCAIYE 202 (266) T ss_dssp EECHHHHHHHHTTT---CCCCSEECCSCSSTTEEEEETTEEEEECCSSSS-SSCCE--EEEGGGTEEEEETTSCC T ss_pred EEECCHHHHHHHCC---CCCCCCCCCEECCCCCEEEECCEEEEEECCCCC-CCCEE--EEECCCCEEEECCEECC T ss_conf 99620223333214---667754431460468678878878874069999-98489--99889999998646877 No 34 >3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, NSR435A, DFA5; 1.80A {Nostoc SP} Probab=99.29 E-value=1.2e-10 Score=94.03 Aligned_cols=131 Identities=16% Similarity=0.186 Sum_probs=88.0 Q ss_pred CCCC--EEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH--HHCCCEEEEECCCCCCCCCHHHHHHHC Q ss_conf 3466--069999517778648999776767888767502870795798766--412468996054301216078889862 Q gi|254780869|r 16 EIGM--NMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHEDHYGALHDLWSFL 91 (559) Q Consensus 16 eiG~--N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~--~~~i~~i~iTH~H~DHiGalp~l~~~~ 91 (559) |.|. |||++. +++.+|||+|.. ... +.+ +..+.+. .++|++|++||+|.||+|+++.++..+ T Consensus 38 ~~G~s~N~YlI~-----~d~~vLIDtG~~--~~~----~~~---l~~~~~~~~~~~I~~IilTH~H~DH~Ggl~~~~~~~ 103 (262) T 3hnn_A 38 ERGTTSNSYVIE-----GDKTAIIDPPVE--SFM----KIY---LEALQQTVNLKKLDYVILGHFSPNRIPTFKALLELA 103 (262) T ss_dssp CCCEEEEEEEEE-----SSSEEEECCCCH--HHH----HHH---HHHHHHHSCGGGEEEEECSSCCGGGHHHHHHHHHHC T ss_pred CCCEEEEEEEEE-----CCCEEEEECCCH--HHH----HHH---HHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHC T ss_conf 897188999993-----299999918975--579----999---999996378425889995997777762259999744 Q ss_pred -CCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEC-CEEEEEEEC--CCCCCCCCEEEEEECCCEEEECCCCE Q ss_conf -99779299999999999985488655622551755557763-489999855--67777653567987681799833402 Q gi|254780869|r 92 -HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVG-AFSIESVRV--NHSIPETMALVIRSPVGNIVHTGDWK 167 (559) Q Consensus 92 -~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g-~~~v~~~~~--~Hsip~a~~~~I~t~~g~i~ytGDfk 167 (559) ++++|+++.+..+++..+. ........+..++.+.++ +..+.+++. .| .|++.. +.-+..+++||||.- T Consensus 104 p~~~v~~~~~~~~~l~~~~~----~~~~~~~~~~~gd~~~~~~g~~l~~i~~~~~H-~~~~~~--~y~~~~~vLftgD~~ 176 (262) T 3hnn_A 104 PQITFVCSLPAAGDLRAAFP----DDNLNILPMRGKETLDLGKGHVLKFLPIPSPR-WPAGLC--TYDVQTQILYTDKIF 176 (262) T ss_dssp TTCEEEECHHHHHHHHHHSS----SSCCEEEECCSSCEEECSTTCEEEEEECCCSS-CTTCEE--EEETTTTEEEEETTT T ss_pred CCCEEEECHHHHHHHHHHHC----CCCCCCCEECCCCEEEECCCCEEEEEECCCCC-CCCCEE--EEECCCCEEEECCCC T ss_conf 48579977899988876523----56643220025514762278237999668999-899629--998788869966634 No 35 >3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding, periplasm,; HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A Probab=99.28 E-value=2.2e-11 Score=99.37 Aligned_cols=146 Identities=13% Similarity=0.132 Sum_probs=87.7 Q ss_pred CCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH-HHCCCEEEEECCCCCCCCCHHHHHH Q ss_conf 068683466069999517778648999776767888767502870795798766-4124689960543012160788898 Q gi|254780869|r 11 LGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE-RKNLMAIFITHAHEDHYGALHDLWS 89 (559) Q Consensus 11 lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~-~~~i~~i~iTH~H~DHiGalp~l~~ 89 (559) +++......|++++. .++.+++||+|.. |.. .+.+ ...+++. .++++.|++||+|.||+|+.+++.. T Consensus 15 ~~~~~~~~~N~~~i~----~~~~~vliD~g~~-~~~----~~~l---~~~i~~~~~~pi~~vi~TH~H~DH~gg~~~~~~ 82 (227) T 3iog_A 15 VEDNYYVQENSMVYF----GAKGVTVVGATWT-PDT----AREL---HKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKS 82 (227) T ss_dssp EEECSSSCEEEEEEE----CSSCEEEESCCSS-HHH----HHHH---HHHHHTTCCSCEEEEECSSSSHHHHTTHHHHHH T ss_pred EECCCCCCCEEEEEE----ECCEEEEEECCCC-HHH----HHHH---HHHHHHHCCCCCEEEEECCCCCCCCCCHHHCCC T ss_conf 857972154289999----7998699929899-799----9999---999986149984199968999653281233054 Q ss_pred HCCCCEECCHHHHHHHHHHHHHC--------CCCCCCC----EEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECC Q ss_conf 62997792999999999999854--------8865562----25517555577634899998556777765356798768 Q gi|254780869|r 90 FLHVPVYASPFAIGLLEAKRVYE--------RVSKKIP----CISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPV 157 (559) Q Consensus 90 ~~~~pIY~s~~t~~li~~~~~~~--------~~~~~~~----~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~ 157 (559) ..+|||+++.+.++++...... ....... -...+....+..|.+++-.+.-+| .||+.++.+ |+ T Consensus 83 -~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~g~v~~~~~~pGH-t~g~~~~~~--~~ 158 (227) T 3iog_A 83 -IGAKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRAFYAGPAH-TPDGIFVYF--PD 158 (227) T ss_dssp -TTCEEEEEHHHHHHHHHHHHHHHHHHHHHCTTSCCCCCCCCSEEESSCEEETTTTEEEECCCCSS-SSSCCEEEE--TT T ss_pred -CCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCEEECCCCEEEEEECCCC-CCCCEEEEE--CC T ss_conf -68367617989999874123332222202554578765688688658588558718999957898-998664672--78 Q ss_pred CEEEECCCCEECCCC Q ss_conf 179983340246776 Q gi|254780869|r 158 GNIVHTGDWKLDDDA 172 (559) Q Consensus 158 g~i~ytGDfk~d~~p 172 (559) .+++||||.-++..| T Consensus 159 ~~vlf~GD~~~~~~~ 173 (227) T 3iog_A 159 EQVLYGGCILKEKLG 173 (227) T ss_dssp TTEEECGGGSCSSCC T ss_pred CCEEEECCCCCCCCC T ss_conf 789997463578967 No 36 >3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching, alternative binding site, product complex; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovarkurstaki} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Probab=99.28 E-value=2.1e-11 Score=99.46 Aligned_cols=156 Identities=19% Similarity=0.255 Sum_probs=91.1 Q ss_pred CCCCEEEEEECCCC----------------CCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCC-------EEEECCC Q ss_conf 98863999940686----------------834660699995177786489997767678887675-------0287079 Q gi|254780869|r 1 MKNEELVFLPLGGV----------------GEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPG-------VDLVFPD 57 (559) Q Consensus 1 m~~~~i~~~~lGG~----------------~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~g-------id~iiPd 57 (559) |...+|.+++-|=+ =++--+|++++ ..+..+|||+|+.-.....++ -+...|. T Consensus 5 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~pv~~~LI~----~~~g~iLiDtG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (254) T 3dha_A 5 MTVKKLYFIPAGRCMLDHSSVNSALTPGKLLNLPVWCYLLE----TEEGPILVDTGMPESAVNNEGLFNGTFVEGQILPK 80 (254) T ss_dssp CCBSEEEEEEEEEEEEEGGGTSTTSCSCCEEEEEEEEEEEE----ETTEEEEECCCCCGGGBTCTTTTTTSTTTTTEEEE T ss_pred CCEEEEEEECCCEEEECHHHCCCCCCCCCEEEEEEEEEEEE----ECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 34148999538659988688056799996698634899999----89951999598895532233112542111235656 Q ss_pred -------HHHHHHHH---HCCCEEEEECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHH--HCCCCCCCCEEEECC Q ss_conf -------57987664---124689960543012160788898629977929999999999998--548865562255175 Q gi|254780869|r 58 -------ITFIMKER---KNLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRV--YERVSKKIPCISFQA 125 (559) Q Consensus 58 -------~~~l~~~~---~~i~~i~iTH~H~DHiGalp~l~~~~~~pIY~s~~t~~li~~~~~--~~~~~~~~~~~~i~~ 125 (559) .+.|++.. ++|+.|++||+|.||+|++.++ .+.|||+++.........-. .....+......++. T Consensus 81 ~~~~~~l~~~L~~~G~~p~dI~~Vi~TH~H~DH~Gg~~~f---~~A~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (254) T 3dha_A 81 MTEEDRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNGAF---TNTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEG 157 (254) T ss_dssp BCGGGSHHHHHHHHTCCGGGCSEEECSCCSHHHHTTGGGC---SSSCEEEEHHHHHHHHHCTTSCGGGSCTTSCEEEECS T ss_pred CCHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHCCCCCCC---CCCCCCCCHHHHHHHHCCCHHHHHCCCCCCCEEEEEC T ss_conf 5606689999998499979996999079972102753113---5642003888999874721110110476555389607 Q ss_pred CCEEEECCEEEEEEEC-CCCCCCCCEEEEEECC-CEEEECCCCE Q ss_conf 5557763489999855-6777765356798768-1799833402 Q gi|254780869|r 126 GDKVDVGAFSIESVRV-NHSIPETMALVIRSPV-GNIVHTGDWK 167 (559) Q Consensus 126 ~~~~~~g~~~v~~~~~-~Hsip~a~~~~I~t~~-g~i~ytGDfk 167 (559) +..-+++++ ++.+ +| .||+.++.++++. +.++++||.- T Consensus 158 -~~~~~~gi~--v~~tpGH-T~G~~~~~v~~~~~~~vl~~GD~~ 197 (254) T 3dha_A 158 -DYEVVPGVQ--LLYTPGH-SPGHQSLFIETEQSGSVLLTIDAS 197 (254) T ss_dssp -SEEEETTEE--EEECCSS-STTCEEEEEEETTTEEEEEEETTC T ss_pred -CEEECCCEE--ECCCCCC-CCCCEEEEEECCCCCEEEEEECCC T ss_conf -537618749--8245899-942389999828998899996778 No 37 >1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Probab=99.26 E-value=7.7e-12 Score=102.61 Aligned_cols=139 Identities=19% Similarity=0.227 Sum_probs=82.6 Q ss_pred CCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH---HHCCCEEEEECCCCCCCCCHHHHHHH-- Q ss_conf 3466069999517778648999776767888767502870795798766---41246899605430121607888986-- Q gi|254780869|r 16 EIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE---RKNLMAIFITHAHEDHYGALHDLWSF-- 90 (559) Q Consensus 16 eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~---~~~i~~i~iTH~H~DHiGalp~l~~~-- 90 (559) ++.-|||+++ ..++.+|||||..-.-....| .+ .+.|.+. .++|+.|++||.|.||+|++..+... T Consensus 94 ~~~~n~~LI~----~g~~~iLIDtG~g~~~~~~~~--~l---~~~L~~~Gi~p~dId~VvlTH~H~DHiGGl~~~~~~~f 164 (331) T 1p9e_A 94 ETSVTGYLVN----TGSKLVLVDTGAAGLFGPTLG--RL---AANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQLAF 164 (331) T ss_dssp EEEEEEEEEE----CSSCEEEECCCCTTSSCTTCC--CH---HHHHHHTTCCGGGCCEEECSCCCHHHHGGGEETTEESS T ss_pred CCEEEEEEEE----ECCEEEEEECCCCCCCCCHHH--HH---HHHHHHCCCCHHHCCEEEECCCCHHHHCCHHHHHHHHC T ss_conf 3216999999----899889998999856661188--99---99999849998999799959797010141335566407 Q ss_pred CCCCEECCHHHHHHHHHHHHHCCCCCC-------------------CCEEEECCCCEEEECCEEEEEEEC-CCCCCCCCE Q ss_conf 299779299999999999985488655-------------------622551755557763489999855-677776535 Q gi|254780869|r 91 LHVPVYASPFAIGLLEAKRVYERVSKK-------------------IPCISFQAGDKVDVGAFSIESVRV-NHSIPETMA 150 (559) Q Consensus 91 ~~~pIY~s~~t~~li~~~~~~~~~~~~-------------------~~~~~i~~~~~~~~g~~~v~~~~~-~Hsip~a~~ 150 (559) .+..+|++................... ..+...+....+ +.+ ++.+++ +| .||+.+ T Consensus 165 p~a~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ei-~~G--i~vi~tpGH-TpGh~~ 240 (331) T 1p9e_A 165 PNAVVRADQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFSGNTDL-VPG--IKALASHGH-TPGHTT 240 (331) T ss_dssp TTCEEECBHHHHHHHSCHHHHTTCSSTTSCHHHHHHHHHHHHHHHTTCBCCBCSSEEC-STT--EEEEECTTS-STTCEE T ss_pred CCCEEECCHHHHHHHHCCHHHHCCCCCHHCCHHHHHHHHCCCCCCCCEEEEECCCCEE-CCC--EEEEECCCC-CCCCEE T ss_conf 8723431467799874220010154200001144544412320004637850574020-586--489855899-987679 Q ss_pred EEEEECCCEEEECCCCE Q ss_conf 67987681799833402 Q gi|254780869|r 151 LVIRSPVGNIVHTGDWK 167 (559) Q Consensus 151 ~~I~t~~g~i~ytGDfk 167 (559) +.+++++++++|+||.- T Consensus 241 ~~i~~~~~~~lf~GD~i 257 (331) T 1p9e_A 241 YVVESQGQKLALLGDLI 257 (331) T ss_dssp EEEEETTEEEEECTTSC T ss_pred EEEECCCEEEEEEECCC T ss_conf 99961990899993734 No 38 >2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Probab=99.26 E-value=4.2e-09 Score=82.97 Aligned_cols=119 Identities=20% Similarity=0.260 Sum_probs=85.5 Q ss_pred HCCCEEEEECCCCCCCCCHHH--HHHHC--CCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEEC Q ss_conf 124689960543012160788--89862--99779299999999999985488655622551755557763489999855 Q gi|254780869|r 66 KNLMAIFITHAHEDHYGALHD--LWSFL--HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV 141 (559) Q Consensus 66 ~~i~~i~iTH~H~DHiGalp~--l~~~~--~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~ 141 (559) .+|++|||||.|.||++.... +.... .+|+|++..+..+++.. +. +...+..+++++.+.+++++++.++. T Consensus 108 ~~IDaVLiTH~H~DHld~~~l~~~~~~~~~~~~~~gP~~~~~~l~~~----g~-~~~~i~~~~~g~~~~v~~~~i~~~~~ 182 (360) T 2wyl_A 108 RQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGW----GV-PKERCIVVKPGDVVKVKDIEIHALDA 182 (360) T ss_dssp CCCSEEECSBSCTTTCCHHHHHHHHHHSCTTCCEEECHHHHHHHHHH----TC-CGGGEEECCTTCEEEETTEEEEEEEC T ss_pred CCCCEEEECCCCHHHCCCHHHHHHHHCCCCCCEEECCHHHHHHHHHC----CC-CHHHEEEECCCCEEEEECCEEEEEEE T ss_conf 88889997999602178099999985476774386588999999866----99-65515760578657740213577631 Q ss_pred CCCC--------------------CCCCEEEEEECCCEEEECCCCEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCC Q ss_conf 6777--------------------765356798768179983340246776654238988998608788299996356 Q gi|254780869|r 142 NHSI--------------------PETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDST 199 (559) Q Consensus 142 ~Hsi--------------------p~a~~~~I~t~~g~i~ytGDfk~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT 199 (559) .|+. ..++|+.+++++++|+|+||=. ...++..+.+.. .+|++++... T Consensus 183 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~ie~~g~tIy~sGDT~--------~~~~~~~~~~~~--~iDvall~ig 250 (360) T 2wyl_A 183 FDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSH--------YSNYYAKHGNEH--QIDVALGSYG 250 (360) T ss_dssp CCC------------------CCTTTBEEEEEEETTEEEEECTTCC--------CCTTHHHHHHHS--CCCEEEEEBC T ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCC--------CCHHHHHHHCCC--CCCEEEECCC T ss_conf 4555566426644466655777877404899971991899926988--------668899985348--9858996588 No 39 >1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Probab=99.26 E-value=3.1e-11 Score=98.30 Aligned_cols=132 Identities=19% Similarity=0.235 Sum_probs=97.0 Q ss_pred EEEEEECCCCCCCCCE-EEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCC Q ss_conf 3999940686834660-699995177786489997767678887675028707957987664124689960543012160 Q gi|254780869|r 5 ELVFLPLGGVGEIGMN-MALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGA 83 (559) Q Consensus 5 ~i~~~~lGG~~eiG~N-~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGa 83 (559) +|.++|. ..+ | +|++. .+..++.++||.|- . + +-.++++++..++.+|++||.|.||+|| T Consensus 2 ~i~~ip~--l~d---Ny~Yli~--d~~t~~~~vIDp~~-----~----~---~vl~~l~~~~~~l~~Il~TH~H~DH~~g 62 (254) T 1xm8_A 2 QIELVPC--LKD---NYAYILH--DEDTGTVGVVDPSE-----A----E---PIIDSLKRSGRNLTYILNTHHHYDHTGG 62 (254) T ss_dssp EEEEEEE--TTT---EEEEEEE--CTTTCCEEEECCSS-----H----H---HHHHHHHHHTCCCCEEECSSCCHHHHTT T ss_pred EEEEEEE--ECC---EEEEEEE--ECCCCEEEEECCCC-----C----H---HHHHHHHHCCCCEEEEEECCCCCCCCCH T ss_conf 7899743--425---7899999--89999899998978-----2----9---9999999779916899944788655266 Q ss_pred HHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCEEEEC Q ss_conf 78889862997792999999999999854886556225517555577634899998556777765356798768179983 Q gi|254780869|r 84 LHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHT 163 (559) Q Consensus 84 lp~l~~~~~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~yt 163 (559) ..+|...+++|||+++.... .....-..++.++.+++|+++++.+.+..-.||+++|.+ ++..++|| T Consensus 63 ~~~l~~~~~~~i~~~~~~~~-----------~~~~~~~~~~dgd~i~~g~~~~~vi~tPGHT~ghv~~~~--~~~~~lft 129 (254) T 1xm8_A 63 NLELKDRYGAKVIGSAMDKD-----------RIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYF--PGSRAIFT 129 (254) T ss_dssp HHHHHHHHCCEEEEEGGGGG-----------GSTTEEEEECTTCEEEETTEEEEEEECCSSSSSCEEEEE--GGGTEEEE T ss_pred HHHHHHHCCCEEEEECCCCC-----------CCCCCCEEECCCCEEEECCEEEEEEECCCCCCCCEEEEE--CCCCEEEE T ss_conf 89998863983897333224-----------587898783489736788878999972798877568997--57537885 Q ss_pred CCCEE Q ss_conf 34024 Q gi|254780869|r 164 GDWKL 168 (559) Q Consensus 164 GDfk~ 168 (559) ||.-| T Consensus 130 GDtlf 134 (254) T 1xm8_A 130 GDTMF 134 (254) T ss_dssp ETTEE T ss_pred CCEEE T ss_conf 68887 No 40 >1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 2bfz_A 2bg6_A 2bga_A ... Probab=99.26 E-value=3e-11 Score=98.41 Aligned_cols=141 Identities=18% Similarity=0.276 Sum_probs=97.8 Q ss_pred EEECCCCCC--CCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH-HHCCCEEEEECCCCCCCCCH Q ss_conf 994068683--466069999517778648999776767888767502870795798766-41246899605430121607 Q gi|254780869|r 8 FLPLGGVGE--IGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE-RKNLMAIFITHAHEDHYGAL 84 (559) Q Consensus 8 ~~~lGG~~e--iG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~-~~~i~~i~iTH~H~DHiGal 84 (559) +..+|.... ++.||++++ .++..+|||+|........ + .+++.+. ..+++.||+||+|.||+|++ T Consensus 28 ~~~~~~~~~~~~~~N~~~I~----~~~~~vlID~g~~~~~~~~-----l---~~~i~~~~~~~v~~ii~TH~H~DH~gg~ 95 (227) T 1mqo_A 28 HTELGSFNGEAVPSNGLVLN----TSKGLVLVDSSWDDKLTKE-----L---IEMVEKKFQKRVTDVIITHAHADRIGGI 95 (227) T ss_dssp EEEEEEETTEEEEEEEEEEE----ETTEEEEESCCSSHHHHHH-----H---HHHHHHHHTSCEEEEECCCCSHHHHTTH T ss_pred EEECCCCCCCEEEEEEEEEE----ECCEEEEEECCCCHHHHHH-----H---HHHHHHHCCCCEEEEEECCCCHHHHCHH T ss_conf 96036667961514899999----7999899949899899999-----9---9999974499816999678981023539 Q ss_pred HHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEEC--CCCCCCCCEEEEEECCCEEEE Q ss_conf 888986299779299999999999985488655622551755557763489999855--677776535679876817998 Q gi|254780869|r 85 HDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV--NHSIPETMALVIRSPVGNIVH 162 (559) Q Consensus 85 p~l~~~~~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~--~Hsip~a~~~~I~t~~g~i~y 162 (559) +++... .++++++..+...+... ........+..++.+..|+.++..+.. +|+ |++.++. .|..+++| T Consensus 96 ~~~~~~-~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~g~~~~~~~~~~pgHt-~~~~~~~--~~~~~vl~ 165 (227) T 1mqo_A 96 KTLKER-GIKAHSTALTAELAKKN------GYEEPLGDLQTVTNLKFGNMKVETFYPGKGHT-EDNIVVW--LPQYNILV 165 (227) T ss_dssp HHHHHH-TCEEECBHHHHHHHHHT------TCCCCCCCBCSEEEEEETTEEEEEECCCCSSS-SSCCEEE--ETTTTEEE T ss_pred HHHHHC-CCEEEEECHHHHHHHHC------CCCCCCCCCCCCCEEECCCEEEEEEECCCCCC-CCCEEEE--ECCCCEEE T ss_conf 999747-99899941023333212------54443321256745641880788882279877-8845887--06788599 Q ss_pred CCCCEECC Q ss_conf 33402467 Q gi|254780869|r 163 TGDWKLDD 170 (559) Q Consensus 163 tGDfk~d~ 170 (559) +||.-+.. T Consensus 166 ~GD~i~~~ 173 (227) T 1mqo_A 166 GGCLVKST 173 (227) T ss_dssp EETTSCCT T ss_pred EEEEECCC T ss_conf 60085679 No 41 >3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Probab=99.25 E-value=3.5e-12 Score=105.10 Aligned_cols=142 Identities=19% Similarity=0.142 Sum_probs=76.7 Q ss_pred CCCCEEEEEEECCCCCCEEEEEECCCCCCCCCC-----CCE---EEECCCHHHHHHH---HHCCCEEEEECCCCCCCCCH Q ss_conf 346606999951777864899977676788876-----750---2870795798766---41246899605430121607 Q gi|254780869|r 16 EIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDL-----PGV---DLVFPDITFIMKE---RKNLMAIFITHAHEDHYGAL 84 (559) Q Consensus 16 eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~-----~gi---d~iiPd~~~l~~~---~~~i~~i~iTH~H~DHiGal 84 (559) +++.||++++ ..+..+|||+|+.-..... .++ +.+ .+.|.+. .++|+.||+||+|.||+|++ T Consensus 45 ~~~~~~~LI~----~~~~~iLiDtG~g~~~~~~~~~~~~~~~~~~~l---~~~L~~~G~~p~dId~VilTH~H~DH~Ggl 117 (280) T 3esh_A 45 NLPTHPILIQ----TAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHI---IADLANYNLTPKDIDYVLMTHMHFDHAAGL 117 (280) T ss_dssp EEECCCEEEE----CSSCEEESCCTTCSSCSCHHHHHHTTCSSCCCH---HHHHHTTTCCTTSCCEEECSCCCHHHHGGG T ss_pred EEEEEEEEEE----ECCEEEEEECCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHCCCCHHHCCEEECCCCCCCCCCCH T ss_conf 6678899999----299059996289962235532333577631069---999998499979998997678966545880 Q ss_pred HHHHHH--C-CCCEECCHHHHHHHHHH-HHH-CCCCC------CCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEE Q ss_conf 888986--2-99779299999999999-985-48865------5622551755557763489999855677776535679 Q gi|254780869|r 85 HDLWSF--L-HVPVYASPFAIGLLEAK-RVY-ERVSK------KIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVI 153 (559) Q Consensus 85 p~l~~~--~-~~pIY~s~~t~~li~~~-~~~-~~~~~------~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I 153 (559) ...... + +...|..+......... ... ..... ...+..++.+..+ ..++++.+-| +| .||++++.+ T Consensus 118 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gi~vi~tP-GH-TpGh~~~~v 194 (280) T 3esh_A 118 TDQAGHAIFENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNKLILFEKHFEP-VPGIKMQHSG-GH-SFGHTIITI 194 (280) T ss_dssp SCTTSCCSSTTCEEEEEHHHHHHHHSCCTTGGGTSCGGGCCGGGGGEEEESSEECS-STTEEEEECC-SS-STTCEEEEE T ss_pred HHCCCCCCCCCCEEEECHHHHHHHCCCCHHHCCCCCCCCCCCCCCCEEECCCCEEE-CCCCEEEECC-CC-CCCCEEEEE T ss_conf 00247515787689950146422028231220232112344333523531488076-4886798559-98-988889999 Q ss_pred EECCCEEEECCCCE Q ss_conf 87681799833402 Q gi|254780869|r 154 RSPVGNIVHTGDWK 167 (559) Q Consensus 154 ~t~~g~i~ytGDfk 167 (559) ++++++++||||.- T Consensus 195 ~~~~~~vlf~GD~~ 208 (280) T 3esh_A 195 ESQGDKAVHMGDIF 208 (280) T ss_dssp EETTEEEEECGGGS T ss_pred EECCCEEEEEEECC T ss_conf 95991799998243 No 42 >2qed_A Hydroxyacylglutathione hydrolase; metallo-B- lactamase superfamily; 1.45A {Salmonella typhimurium LT2} SCOP: d.157.1.2 Probab=99.22 E-value=1.4e-10 Score=93.56 Aligned_cols=131 Identities=19% Similarity=0.251 Sum_probs=94.2 Q ss_pred CCCCEEEEEECCCCCCCCCE-EEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCC Q ss_conf 98863999940686834660-69999517778648999776767888767502870795798766412468996054301 Q gi|254780869|r 1 MKNEELVFLPLGGVGEIGMN-MALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHED 79 (559) Q Consensus 1 m~~~~i~~~~lGG~~eiG~N-~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~D 79 (559) |..-+|..+|. ... | +|++. . ..++.++||.|- . + +-.++++++.-++.+|++||+|.| T Consensus 5 ~~~~~i~~iP~--~~D---Ny~Yli~--~-~~~~avvIDPg~-----~----~---~il~~l~~~~~~l~~Il~TH~H~D 64 (258) T 2qed_A 5 IGSMNLNSIPA--FQD---NYIWVLT--N-DEGRCVIVDPGE-----A----A---PVLKAIAEHKWMPEAIFLTHHHHD 64 (258) T ss_dssp --CCEEEEEEE--TTT---EEEEEEE--C-TTSEEEEECCSC-----H----H---HHHHHHHHHTCEEEEEECCSCCHH T ss_pred CCCCEEEEEEE--ECC---EEEEEEE--E-CCCEEEEECCCC-----C----H---HHHHHHHHCCCEEEEEEECCCCCC T ss_conf 65777999600--437---5899999--3-897099986987-----5----9---999999976990579993799987 Q ss_pred CCCCHHHHHHHCCCC-EECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCC Q ss_conf 216078889862997-7929999999999998548865562255175555776348999985567777653567987681 Q gi|254780869|r 80 HYGALHDLWSFLHVP-VYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVG 158 (559) Q Consensus 80 HiGalp~l~~~~~~p-IY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g 158 (559) |+|+++.+...+..+ +|+.... ........++.++++++|+++++.+.+..-.||+++|.+ + T Consensus 65 Hi~g~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~l~dgd~i~iG~~~~~vihTPGHT~g~v~~~~----~ 127 (258) T 2qed_A 65 HVGGVKELLQHFPQMTVYGPAET-------------QDKGATHLVGDGDTIRVLGEKFTLFATPGHTLGHVCYFS----R 127 (258) T ss_dssp HHTTHHHHHHHCTTCEEEECGGG-------------GGGTCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEE----T T ss_pred CCCCHHHHHHHHCCEEEECCCCC-------------CCCCCCEEECCCCEEEECCEEEEEEECCCCCCCCEEEEE----C T ss_conf 65533554443202145215433-------------345541464058678768845799967899988667873----2 Q ss_pred EEEECCCCEE Q ss_conf 7998334024 Q gi|254780869|r 159 NIVHTGDWKL 168 (559) Q Consensus 159 ~i~ytGDfk~ 168 (559) ..+||||.-| T Consensus 128 ~~lFtGDtLF 137 (258) T 2qed_A 128 PYLFCGDTLF 137 (258) T ss_dssp TEEEEETTEE T ss_pred CEEEECCCCC T ss_conf 4056078130 No 43 >2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrolase; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Probab=99.20 E-value=6.5e-11 Score=95.94 Aligned_cols=141 Identities=21% Similarity=0.274 Sum_probs=91.7 Q ss_pred CEEEEEECCCCCCCCCE-EEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH---------HHCCCEEEE Q ss_conf 63999940686834660-69999517778648999776767888767502870795798766---------412468996 Q gi|254780869|r 4 EELVFLPLGGVGEIGMN-MALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE---------RKNLMAIFI 73 (559) Q Consensus 4 ~~i~~~~lGG~~eiG~N-~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~---------~~~i~~i~i 73 (559) -++.++|. ..+ | +|++. .+..++.++||.|. +.+ |=+++++++ .-++.+|++ T Consensus 29 ~~v~~iP~--l~D---NysYLI~--d~~t~ea~vIDPg~---d~~--------~il~~i~~~~~~~~~~~~~l~l~~ILl 90 (311) T 2p18_A 29 FSVTVVPT--LKD---NFSYLIN--DHTTHTLAAVDVNA---DYK--------PILTYIEEHLKQQGNADVTYTFSTILS 90 (311) T ss_dssp EEEEEEEE--TTT---EEEEEEE--ETTTTEEEEESCCS---CCH--------HHHHHHHHTC--------CCEEEEEEE T ss_pred EEEEEEEE--CCC---EEEEEEE--ECCCCEEEEEECCC---CHH--------HHHHHHHHHHHHHCCCCCCCEEEEEEC T ss_conf 08999500--064---2899999--89999799991898---618--------999999998875311236976879982 Q ss_pred ECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEE Q ss_conf 05430121607888986299779299999999999985488655622551755557763489999855677776535679 Q gi|254780869|r 74 THAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVI 153 (559) Q Consensus 74 TH~H~DHiGalp~l~~~~~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I 153 (559) ||+|.||+||+..|...++.+.+..+... ..............++.++.+++|+++++++.+..-.||+.+|.+ T Consensus 91 TH~H~DHigG~~~L~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~dgd~i~~G~~~l~vi~tPGHT~ghv~~~~ 164 (311) T 2p18_A 91 THKHWDHSGGNAKLKAELEAMNSTVPVVV------VGGANDSIPAVTKPVREGDRVQVGDLSVEVIDAPCHTRGHVLYKV 164 (311) T ss_dssp SSSSHHHHTTHHHHHHHHHSCC--CCCEE------EEEGGGTCTTCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEE T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCEEE------ECCHHCCCCCCCEEECCCCEEEECCEEEEEEEECCCCCCCEEEEE T ss_conf 78887225249999998478532231034------113110687784662489705799999999864455776369998 Q ss_pred EEC----CCEEEECCCCEE Q ss_conf 876----817998334024 Q gi|254780869|r 154 RSP----VGNIVHTGDWKL 168 (559) Q Consensus 154 ~t~----~g~i~ytGDfk~ 168 (559) +.+ ++.++||||.-| T Consensus 165 ~~~~~~~~~~~lFtGDtlF 183 (311) T 2p18_A 165 QHPQHPNDGVALFTGDTMF 183 (311) T ss_dssp ECTTCGGGCEEEEEETTEE T ss_pred CCCCCCCCCCEEEECCEEC T ss_conf 4677776466799899952 No 44 >1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Probab=99.19 E-value=2.3e-10 Score=92.06 Aligned_cols=132 Identities=17% Similarity=0.161 Sum_probs=94.5 Q ss_pred EEEEEECCCCCCCCCE-EEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCC Q ss_conf 3999940686834660-699995177786489997767678887675028707957987664124689960543012160 Q gi|254780869|r 5 ELVFLPLGGVGEIGMN-MALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGA 83 (559) Q Consensus 5 ~i~~~~lGG~~eiG~N-~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGa 83 (559) +|..+|. ..+ | +|++. .+..++.++||.|- . + +-.++++++.-++.+|++||+|.||++| T Consensus 2 ~i~~ip~--l~D---NysYli~--d~~t~~a~vIDP~~-----~----~---~i~~~~~~~~l~l~~Il~TH~H~DHi~g 62 (260) T 1qh5_A 2 KVEVLPA--LTD---NYMYLVI--DDETKEAAIVDPVQ-----P----Q---KVVDAARKHGVKLTTVLTTHHHWDHAGG 62 (260) T ss_dssp EEEEEEE--TTT---EEEEEEE--ETTTTEEEEESCSS-----H----H---HHHHHHHHHTCEEEEEECCCSSHHHHTT T ss_pred EEEEEEE--ECC---EEEEEEE--ECCCCEEEEEECCC-----C----H---HHHHHHHHCCCEEEEEEECCCCHHHHCC T ss_conf 5789410--342---6899999--89999899990898-----8----9---9999999779968899947898567510 Q ss_pred HHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECC---CEE Q ss_conf 78889862997792999999999999854886556225517555577634899998556777765356798768---179 Q gi|254780869|r 84 LHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPV---GNI 160 (559) Q Consensus 84 lp~l~~~~~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~---g~i 160 (559) ++.|......++|... ..........+..++.+++|+++++.+.+..-.||++.|.+.-++ ..+ T Consensus 63 ~~~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~gd~~~~g~~~~~vi~TPGHT~gsv~~~~~~~~~~~~~~ 129 (260) T 1qh5_A 63 NEKLVKLESGLKVYGG-------------DDRIGALTHKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPA 129 (260) T ss_dssp HHHHHHHSTTCEEEES-------------CTTSTTCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEEECSSSSSCCE T ss_pred HHHHHCCCCCCEECCC-------------CCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCEEEEECCCCCCCCCE T ss_conf 4431011577244133-------------345653322366773899899999999845888885789984788875651 Q ss_pred EECCCCEE Q ss_conf 98334024 Q gi|254780869|r 161 VHTGDWKL 168 (559) Q Consensus 161 ~ytGDfk~ 168 (559) +||||.-| T Consensus 130 lFtGDtLF 137 (260) T 1qh5_A 130 VFTGDTLF 137 (260) T ss_dssp EEEETTEE T ss_pred EEECCCEE T ss_conf 78557443 No 45 >1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Probab=99.19 E-value=8.2e-11 Score=95.24 Aligned_cols=134 Identities=19% Similarity=0.204 Sum_probs=87.5 Q ss_pred CCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC Q ss_conf 68683466069999517778648999776767888767502870795798766412468996054301216078889862 Q gi|254780869|r 12 GGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFL 91 (559) Q Consensus 12 GG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~ 91 (559) .|.+-.+.|++++. .++..+|||.|..-.. ++. -..++.+...+|++||+||+|.||+|++.++... T Consensus 26 ~~~~~~~~N~~~i~----~~~~~vliDtg~~~~~-----~~~---~~~~i~~~~~~i~~ii~TH~H~DH~gg~~~l~~~- 92 (228) T 1jjt_A 26 NGWGVVPKHGLVVL----VNAEAYLIDTPFTAKD-----TEK---LVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSR- 92 (228) T ss_dssp TTSCEEEEEEEEEE----ETTEEEEESCCSSHHH-----HHH---HHHHHHTTTCEEEEEECSSSSHHHHTTHHHHHHT- T ss_pred CCCEEECCEEEEEE----ECCEEEEEECCCCHHH-----HHH---HHHHHHHCCCCEEEEEECCCCCHHHCHHHHHHHC- T ss_conf 87514885799999----8999999979899899-----999---9999996599857999789980010809999867- Q ss_pred CCCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEE--ECCCCCCCCCEEEEEECCCEEEECCCCEE Q ss_conf 997792999999999999854886556225517555577634899998--55677776535679876817998334024 Q gi|254780869|r 92 HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESV--RVNHSIPETMALVIRSPVGNIVHTGDWKL 168 (559) Q Consensus 92 ~~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~--~~~Hsip~a~~~~I~t~~g~i~ytGDfk~ 168 (559) ++|+|+++.+...++... ... ... ......+..++-.+..+ .-+|+ ||+..+. .|+.+++||||+-+ T Consensus 93 ~~~~~a~~~~~~~~~~~~----~~~--~~~-~~~~~~~~~~~~~~~~~~~~~gHt-~~~~~~~--~~~~~ilf~GD~~~ 161 (228) T 1jjt_A 93 SIPTYASELTNELLKKDG----KVQ--ATN-SFSGVNYWLVKNKIEVFYPGPGHT-PDNVVVW--LPERKILFGGCFIK 161 (228) T ss_dssp TCCEEEEHHHHHHHHHTT----CCC--CSE-EECSSCCEEETTTEEEECCCCSSS-TTCCEEE--ETTTTEEEEETTCC T ss_pred CCCEEECHHHHHHHHHCC----CCC--CCC-CCCCCEEEECCCEEEEEEECCCCC-CCCEEEE--ECCCCEEEECCCCC T ss_conf 998887466777776313----421--122-357735996896899998279999-9969999--34756388577726 No 46 >3kl7_A Putative metal-dependent hydrolase; structural genomics, joint center for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Probab=99.18 E-value=2.2e-09 Score=84.89 Aligned_cols=183 Identities=14% Similarity=0.123 Sum_probs=106.1 Q ss_pred CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHH-HHHHCCCCEE Q ss_conf 660699995177786489997767678887675028707957987664124689960543012160788-8986299779 Q gi|254780869|r 18 GMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHD-LWSFLHVPVY 96 (559) Q Consensus 18 G~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~-l~~~~~~pIY 96 (559) |-+|.++++ ++..||+|--...+. +. ...++++|||||+|.||++.-.. .+.+.+++|| T Consensus 36 Ghas~lie~----~g~~ILiDP~~~~~~------------~~----~~p~iD~VLiTH~H~DH~~~~~l~~~~~~~~~vi 95 (235) T 3kl7_A 36 KHGSLMLTY----DNHSIQVDPVSEYAD------------YT----TFPKADIILITHEHGDHLDPKAIQAVEKSDTEII 95 (235) T ss_dssp ETTEEEEEE----TTEEEEESCCTTTCC------------TT----SSCCCSEEEECCSSTTTCCHHHHHHHCCTTCEEE T ss_pred ECCEEEEEE----CCEEEEECCCCCCCC------------HH----CCCCCCEEEECCCCCCCCCCHHHHHHHCCCCEEE T ss_conf 315999998----999999889999886------------20----0898889997998701267220124642696698 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCC---------CCCEEEEEECCCEEEECCCCE Q ss_conf 29999999999998548865562255175555776348999985567777---------653567987681799833402 Q gi|254780869|r 97 ASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIP---------ETMALVIRSPVGNIVHTGDWK 167 (559) Q Consensus 97 ~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip---------~a~~~~I~t~~g~i~ytGDfk 167 (559) +++.+...+.. .......+....++.++|+.+++.|+.+ .+.||+|+.++.+|+|+||-. T Consensus 96 ~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~I~~~p~~h~~~~~~~~~~~~~~~gyvie~~g~~i~~~GDt~ 164 (235) T 3kl7_A 96 ANENSQKKLGK-----------GKVLKNGDTDTSISYMKIEAVPAYNTTPGRDKYHPRHRDNGYILTFDGLRVYIAGDTE 164 (235) T ss_dssp ECHHHHHHHTC-----------SEECCTTCEECCSTTCEEEEEECCCCSTTGGGTSCTTTSEEEEEEETTEEEEECCSCC T ss_pred ECHHHHHHHHH-----------CCCCCCCCCEEEECCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCC T ss_conf 15899877510-----------6420257732775572067897341578766767875337789997997999945867 Q ss_pred ECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE-CHHHHHHHHHHHHH Q ss_conf 46776654238988998608788299996356457888777787999999999862798399994-14778999999999 Q gi|254780869|r 168 LDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTT-FSSSVSRIRSIIDI 246 (559) Q Consensus 168 ~d~~p~~g~~~d~~~l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~-fasni~Ri~~i~~~ 246 (559) . . ..+.+++ .+|+++..-. . ..+.+-.+..+ +++.-+-+++|++ |.. .++.++.++ T Consensus 165 ~--------~---~e~~~~~--~iDv~~lpig---~-~~~m~~~~A~~----~~~~l~pk~viP~H~~~--~~~~~~~~~ 221 (235) T 3kl7_A 165 D--------I---PEMKDLK--DIDIAFLPVN---Q-PYTMTVSQAAK----AARMFSPKILYPYHYGD--TKIGELKDA 221 (235) T ss_dssp S--------C---GGGGGCC--SCSEEEEECC---T-TTSCCHHHHHH----HHHHHCCSEEEEESCTT--CCTTHHHHH T ss_pred C--------H---HHHHHCC--CCCEEEECCC---C-CCCCCHHHHHH----HHHHCCCCEEEEECCCC--CCHHHHHHH T ss_conf 7--------5---7775126--9879997679---9-77579999999----99972999999956899--888999999 Q ss_pred HHHHCCEE Q ss_conf 98718869 Q gi|254780869|r 247 AEQIGRKI 254 (559) Q Consensus 247 a~~~~R~v 254 (559) +++.|-++ T Consensus 222 ~~~~g~~~ 229 (235) T 3kl7_A 222 LKDSGIDV 229 (235) T ss_dssp TTTSCCEE T ss_pred HHHCCCCE T ss_conf 98669961 No 47 >2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center, quorum quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Probab=99.16 E-value=2.3e-10 Score=92.02 Aligned_cols=142 Identities=11% Similarity=0.058 Sum_probs=80.9 Q ss_pred CCCEEEEEEECCCCCCEEEEEECCCCC--CCC-CCCC----E--EEECCCH----HHHHHH---HHCCCEEEEECCCCCC Q ss_conf 466069999517778648999776767--888-7675----0--2870795----798766---4124689960543012 Q gi|254780869|r 17 IGMNMALYGYGSPSSRKWIMIDCGVSF--PKD-DLPG----V--DLVFPDI----TFIMKE---RKNLMAIFITHAHEDH 80 (559) Q Consensus 17 iG~N~~~~~~~~~~~~~~iiiD~G~~f--p~~-~~~g----i--d~iiPd~----~~l~~~---~~~i~~i~iTH~H~DH 80 (559) +..||++++ ..+.++|||+|+.- ... .... . -.+.+.- +.|++. .++|+.|++||+|.|| T Consensus 41 ~pv~~~LI~----~~~g~iLvDtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~p~dI~~VilTH~H~DH 116 (276) T 2r2d_A 41 IPVSAYLIQ----CTDATVLYDTGCHPECMGTNGRWPAQSQLNAPYIGASECNLPERLRQLGLSPDDISTVVLSHLHNDH 116 (276) T ss_dssp EEEEEEEEE----CSSCEEEECCCSCTTCSSTTCSSCHHHHHHSCBCCCTTCSHHHHHHHTTCCGGGCSEEECSCCSTTT T ss_pred EEEEEEEEE----ECCEEEEEECCCCHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCHHHCCEEECCCCCCCC T ss_conf 665899999----4990499957888455124333430222115545653202999999839997999899847996042 Q ss_pred CCCHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCC-------------CCEE-EECCCCEEEECC-EEEEEEECCCCC Q ss_conf 1607888986299779299999999999985488655-------------6225-517555577634-899998556777 Q gi|254780869|r 81 YGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKK-------------IPCI-SFQAGDKVDVGA-FSIESVRVNHSI 145 (559) Q Consensus 81 iGalp~l~~~~~~pIY~s~~t~~li~~~~~~~~~~~~-------------~~~~-~i~~~~~~~~g~-~~v~~~~~~Hsi 145 (559) +|+++++ -+.+||+++.................. .... .........+++ +.+-.+.-+| . T Consensus 117 ~Ggl~~f---~~a~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~pGH-T 192 (276) T 2r2d_A 117 AGCVEYF---GKSRLIAHEDEFATAVRYFATGDHSSPYIVKDIEAWLATPRNWDLVGRDERERELAPGVNLLNFGTGH-A 192 (276) T ss_dssp STTGGGC---SSSEEEEEHHHHHHHHHHHHTTCCSSSSCHHHHHHHTTSCCCEEEECTTCCEEEEETTEEEEEEESSS-S T ss_pred CCCCCCC---CCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCEEECCCCCEEEECCEEEEECCCCC-C T ss_conf 3741357---86300038999998640123443345300455433104444565551268825970997886688998-7 Q ss_pred CCCCEEEEEEC-CCEEEECCCC Q ss_conf 76535679876-8179983340 Q gi|254780869|r 146 PETMALVIRSP-VGNIVHTGDW 166 (559) Q Consensus 146 p~a~~~~I~t~-~g~i~ytGDf 166 (559) ||++++.++++ ++.++++||. T Consensus 193 pGh~~~~v~~~~~~~vl~~GD~ 214 (276) T 2r2d_A 193 SGMLGLAVRLEKQPGFLLVSDA 214 (276) T ss_dssp SSEEEEEEECSSSCEEEEEETT T ss_pred CCCEEEEEEECCCCEEEEEECC T ss_conf 1068999995799979999586 No 48 >2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistance, structure, hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Probab=99.15 E-value=5.8e-10 Score=89.12 Aligned_cols=139 Identities=12% Similarity=0.110 Sum_probs=89.3 Q ss_pred CCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH-HHCCCEEEEECCCCCCCCCHHHHHHHCCCCE Q ss_conf 466069999517778648999776767888767502870795798766-4124689960543012160788898629977 Q gi|254780869|r 17 IGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE-RKNLMAIFITHAHEDHYGALHDLWSFLHVPV 95 (559) Q Consensus 17 iG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~-~~~i~~i~iTH~H~DHiGalp~l~~~~~~pI 95 (559) -..|++++.. .++..+|+|.|.. +.. .+.+ ..++++. ..++.+|++||+|.||+|+++++. ..+++| T Consensus 28 ~~~n~~~i~~---~dg~viliD~~~~-~~~----~~~l---~~~~~~~~~~~v~~II~TH~H~DH~Gg~~~~~-~~~~~i 95 (246) T 2fhx_A 28 YSSNVLVAKM---LDGTVVIVSSPFE-NLG----TQTL---MDWVAKTMKPKKVVAINTHFHLDGTGGNEIYK-KMGAET 95 (246) T ss_dssp TTEEEEEEEC---TTSEEEEESCCSS-HHH----HHHH---HHHHHHHHCCSEEEEECCSSSHHHHTTHHHHH-HTTCEE T ss_pred CCCEEEEEEC---CCCEEEEECCCCC-HHH----HHHH---HHHHHHHCCCCEEEEEECCCCCCCCCCHHHHC-CCCCEE T ss_conf 7614999993---8987999999999-899----9999---99999745996699997999965348888852-479658 Q ss_pred ECCHHHHHHHHHHHH--------------------HCCCCCCCCEEEECCCCEEEECCEEEEEEEC--CCCCCCCCEEEE Q ss_conf 929999999999998--------------------5488655622551755557763489999855--677776535679 Q gi|254780869|r 96 YASPFAIGLLEAKRV--------------------YERVSKKIPCISFQAGDKVDVGAFSIESVRV--NHSIPETMALVI 153 (559) Q Consensus 96 Y~s~~t~~li~~~~~--------------------~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~--~Hsip~a~~~~I 153 (559) |+++.+..++..... ............++.+..+.+|+..++++.. +| .|+. +.+ T Consensus 96 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~gh-t~~~--~~~ 172 (246) T 2fhx_A 96 WSSDLTKQLRLEENKKDRIKAAEFYKNEDLKRRILSSHPVPADNVFDLKQGKVFSFSNELVEVSFPGPAH-SPDN--VVV 172 (246) T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTCCCCCSEEECTTTCEEEEETTEEEEEECCCCSS-STTC--CEE T ss_pred EECHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCEEEEEEECCCCC-CCCC--EEE T ss_conf 8538888998860200001234430111100023566665788607737998999799456764137865-6783--368 Q ss_pred EECCCEEEECCCCEECC Q ss_conf 87681799833402467 Q gi|254780869|r 154 RSPVGNIVHTGDWKLDD 170 (559) Q Consensus 154 ~t~~g~i~ytGDfk~d~ 170 (559) ..++.+++|+||.-+.. T Consensus 173 ~~~~~~vl~~GD~~~~~ 189 (246) T 2fhx_A 173 YFPKKKLLFGGCMIKPK 189 (246) T ss_dssp EETTTTEEEEETTCCSS T ss_pred EECCCCEEEEECEECCC T ss_conf 84789999992761789 No 49 >2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; 2.10A {Thermoanaerobacter tengcongensis MB4} Probab=99.04 E-value=2.5e-09 Score=84.62 Aligned_cols=70 Identities=27% Similarity=0.347 Sum_probs=49.8 Q ss_pred CCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHH---HHHCCCEEEEECCCCCCCCCHHHHHHHC Q ss_conf 8346606999951777864899977676788876750287079579876---6412468996054301216078889862 Q gi|254780869|r 15 GEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMK---ERKNLMAIFITHAHEDHYGALHDLWSFL 91 (559) Q Consensus 15 ~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~---~~~~i~~i~iTH~H~DHiGalp~l~~~~ 91 (559) +|=| ||++++ .++..+|||||.. .. + .+.|++ ..++|++||+||.|.||+|+|+.++... T Consensus 30 ~~~G-~S~LIe----~~~~~iLID~G~~---~~------~---~~~l~~~gi~~~~Id~I~iTH~H~DHigGL~~ll~~~ 92 (284) T 2p4z_A 30 AEHG-LSLLLK----KGNKEIVVDTGQS---EN------F---IKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLERN 92 (284) T ss_dssp BCSS-CEEEEE----ETTEEEEECCCSS---TH------H---HHHHHHTTCCGGGCCEEECCCSCHHHHTTHHHHHHHC T ss_pred CCCE-EEEEEE----ECCEEEEEECCCC---HH------H---HHHHHHCCCCHHHCCEEEECCCCHHHCCCCHHHHHHC T ss_conf 4747-899999----8996899907999---79------9---9999984999789989997464354317766788645 Q ss_pred -CCCEECCHHH Q ss_conf -9977929999 Q gi|254780869|r 92 -HVPVYASPFA 101 (559) Q Consensus 92 -~~pIY~s~~t 101 (559) ..++|+++.+ T Consensus 93 ~~~~~~~~~~~ 103 (284) T 2p4z_A 93 PEVKIYTHKEI 103 (284) T ss_dssp TTCEEEEEGGG T ss_pred CCCCCCCCHHH T ss_conf 56654447656 No 50 >1ztc_A Hypothetical protein TM0894; structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Probab=98.99 E-value=3e-11 Score=98.40 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=82.3 Q ss_pred CEEEEEECCCCCCCC-------CEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHH---HHCCCEEEE Q ss_conf 639999406868346-------6069999517778648999776767888767502870795798766---412468996 Q gi|254780869|r 4 EELVFLPLGGVGEIG-------MNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE---RKNLMAIFI 73 (559) Q Consensus 4 ~~i~~~~lGG~~eiG-------~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~---~~~i~~i~i 73 (559) .++.++..|+.-.+. .||++++. ++..+|||+|.... .+.+ .+.|++. .++|++||+ T Consensus 13 m~~~~~~~g~~~~~~~~~~~~~~~~~li~~----~~~~iLIDtG~~~~------~~~l---~~~l~~~g~~~~~I~~Ii~ 79 (221) T 1ztc_A 13 MELKILVTGGNVFVPGRLNAHFSTVVYLEH----KDRRIIIDPGNLSS------MDEL---EEKFSELGISPDDITDVLF 79 (221) T ss_dssp EEEEEEECCBEEEETTTEECCBCCEEEEEE----TTEEEEECCCCGGG------HHHH---HHHHHHHTCCGGGCCEEEC T ss_pred EEEEEEECCCCEECCCCCCCCCEEEEEEEE----CCEEEEEECCCCCC------HHHH---HHHHHHCCCCHHHCCEEEE T ss_conf 698999818975458866788237999998----99999991999721------9999---9999984999689849995 Q ss_pred ECCCCCCCCCHHHHHHHCCCCEECCHHHHHH-------HHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCC Q ss_conf 0543012160788898629977929999999-------999998548865562255175555776348999985567777 Q gi|254780869|r 74 THAHEDHYGALHDLWSFLHVPVYASPFAIGL-------LEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIP 146 (559) Q Consensus 74 TH~H~DHiGalp~l~~~~~~pIY~s~~t~~l-------i~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip 146 (559) ||.|.||+|+++++.. ..++.++..... .......... ....-..+..++....+....-.+..+| .+ T Consensus 80 TH~H~DH~gg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gH-t~ 154 (221) T 1ztc_A 80 THVHLDHIFNSVLFEN---ATFYVHEVYKTKNYLSFGTIVGRIYSKVI-SSWKNVVLLKGEESLFDEKVKVFHTPWH-AR 154 (221) T ss_dssp SCCCHHHHGGGGGCTT---CEEEEEGGGGGSCGGGGCHHHHHHHHHHH-HTCCSEEEECSCCEETTTTEEEEECCSS-ST T ss_pred CCCCCCCCCCHHHCCC---CCEEEEECHHHHHCCCCCCCCCCCCCCCC-CCCCEEEEECCCEEEECEEEEECCCCCC-CH T ss_conf 9987244454121046---50554100022210122221100122345-5542289706843760205772478998-83 Q ss_pred CCCEEEEEEC-CCEEEECCCCE Q ss_conf 6535679876-81799833402 Q gi|254780869|r 147 ETMALVIRSP-VGNIVHTGDWK 167 (559) Q Consensus 147 ~a~~~~I~t~-~g~i~ytGDfk 167 (559) +++++.+++. .++++||||.- T Consensus 155 ~~~~~~~~~~~~~~iLf~GD~~ 176 (221) T 1ztc_A 155 EHLSFLLDTENAGRVLITGDIT 176 (221) T ss_dssp TCEEEEEEETTTEEEEECGGGS T ss_pred HHEEEEEECCCCCEEEEECCCC T ss_conf 4776899558996399975678 No 51 >3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, seattle structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} Probab=98.96 E-value=3.8e-08 Score=76.06 Aligned_cols=79 Identities=25% Similarity=0.323 Sum_probs=53.8 Q ss_pred EEEEEEEC-CCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC-----CC Q ss_conf 06999951-7778648999776767888767502870795798766412468996054301216078889862-----99 Q gi|254780869|r 20 NMALYGYG-SPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFL-----HV 93 (559) Q Consensus 20 N~~~~~~~-~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~-----~~ 93 (559) .+.++++. .+.++..||||||-.|. .+.+.....++++|||||.|.||+++|+.|+... .. T Consensus 64 ~S~li~~~~~~~~~~~iLiD~G~~~~-------------~~~~~~~~~~id~I~lTH~H~DH~~GL~~l~~~~~~~~~~~ 130 (293) T 3md7_A 64 ASLLVERYDAEGNNTVVVIDTGPDFR-------------MQMIDSGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLM 130 (293) T ss_dssp CEEEEEEECTTCCEEEEEECCCTTHH-------------HHHHHHTCCCCSEEECSCCCHHHHTTGGGGHHHHHHHTSCE T ss_pred CEEEEEECCCCCCCEEEEEECCCCHH-------------HHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCC T ss_conf 47999854678997589996881379-------------99864234567789984466444557545444554045553 Q ss_pred CEECCHHHHHHHHHHHHH Q ss_conf 779299999999999985 Q gi|254780869|r 94 PVYASPFAIGLLEAKRVY 111 (559) Q Consensus 94 pIY~s~~t~~li~~~~~~ 111 (559) ++|+...+.......... T Consensus 131 ~~~~~~~~~~~~~~~~~~ 148 (293) T 3md7_A 131 DVYANRLTRNRLYDTFGY 148 (293) T ss_dssp EEEECHHHHHHHHHHCGG T ss_pred CEEEEECCHHHHHCCCCH T ss_conf 134100110122024300 No 52 >2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Probab=98.95 E-value=2.1e-09 Score=85.05 Aligned_cols=136 Identities=13% Similarity=0.171 Sum_probs=86.4 Q ss_pred CEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHH-HHHH-HCCCEEEEECCCCCCCCCHHHHHHH-----C Q ss_conf 6069999517778648999776767888767502870795798-7664-1246899605430121607888986-----2 Q gi|254780869|r 19 MNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFI-MKER-KNLMAIFITHAHEDHYGALHDLWSF-----L 91 (559) Q Consensus 19 ~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l-~~~~-~~i~~i~iTH~H~DHiGalp~l~~~-----~ 91 (559) .||++++ .++.+++||+|........ + .+.+ ++.. ++|++|++||.|.||+|+...+... . T Consensus 123 aN~~~I~----gddG~IVIDtg~s~e~A~a-----a---le~~~~~l~~kPV~aVI~TH~H~DH~GGa~~~~e~~~~~~~ 190 (658) T 2cfu_A 123 ANITFIR----GDSGWIVVDTLTTPATARA-----A---YELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVASG 190 (658) T ss_dssp SCEEEEE----CSSSEEEECCCSSHHHHHH-----H---HHHHHHHHCCCCEEEEECSBSCHHHHTTGGGTCCHHHHHTT T ss_pred CEEEEEE----ECCEEEEEECCCCHHHHHH-----H---HHHHHHHCCCCCEEEEEECCCCHHHCCCHHHHHCCCCCCCC T ss_conf 6189999----3998999979999899999-----9---99999865799848999899970105747988135421467 Q ss_pred CCCEECCHHHHHHHH-----------HHH-HHCCC-CC-----------------------CCCEEEECCCCEEEECCEE Q ss_conf 997792999999999-----------999-85488-65-----------------------5622551755557763489 Q gi|254780869|r 92 HVPVYASPFAIGLLE-----------AKR-VYERV-SK-----------------------KIPCISFQAGDKVDVGAFS 135 (559) Q Consensus 92 ~~pIY~s~~t~~li~-----------~~~-~~~~~-~~-----------------------~~~~~~i~~~~~~~~g~~~ 135 (559) .+|||++......+. .+. ...+. .+ .......+.++.+.+|+.+ T Consensus 191 ~~~IiA~~~~~~~~~~e~~~~~~~~~rRa~~~~g~~lp~~~~g~~~~glg~~~~~~~~~~~~p~~~~~~~~~~l~igG~~ 270 (658) T 2cfu_A 191 AVQIIAPAGFMEAAIKENVLAGNAMMRRATYQYGTQLPKGPQGQVDMAIGKGLARGPLSLLAPTRLIEGEGEDLVLDGVP 270 (658) T ss_dssp SSEEEEETTHHHHHC---CTTHHHHHHHHHHHTTTTSCBSTTSBCCCSSSSCCCCSCCCCCCCSEEECTTEEEEEETTEE T ss_pred CCEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCEE T ss_conf 74289734468997630011027788899887632278550104453445676668654358965874152467779989 Q ss_pred EEEEECC--CCCCCCCEEEEEECCCEEEECCCCEEC Q ss_conf 9998556--777765356798768179983340246 Q gi|254780869|r 136 IESVRVN--HSIPETMALVIRSPVGNIVHTGDWKLD 169 (559) Q Consensus 136 v~~~~~~--Hsip~a~~~~I~t~~g~i~ytGDfk~d 169 (559) ++++.+. | .|+.+. +..|+.+++++||.-+. T Consensus 271 ~e~i~tPG~H-Tp~~l~--vy~Pe~kvLf~GD~v~~ 303 (658) T 2cfu_A 271 FTFQNTPGTE-SPAEMN--IWLPRQKALLMAENVVG 303 (658) T ss_dssp EEEEECTTSS-SSSBEE--EEETTTTEEECTTTSCS T ss_pred EEEEECCCCC-CCCCEE--EEECCCCEEEECCCCCC T ss_conf 9999768999-877479--99757896874366566 No 53 >1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; structural genomics, JCSG, PSI, protein structure initiative; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 Probab=98.95 E-value=4.6e-08 Score=75.50 Aligned_cols=121 Identities=21% Similarity=0.207 Sum_probs=81.0 Q ss_pred CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCEEC Q ss_conf 66069999517778648999776767888767502870795798766412468996054301216078889862997792 Q gi|254780869|r 18 GMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYA 97 (559) Q Consensus 18 G~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~~~pIY~ 97 (559) |-+|.+++. ++..|++|--... +|. -.|+ .++++|++||.|.||... .++ T Consensus 19 Ghs~~lIe~----~g~~ILiDP~~~~-----~~~--~~~~--------~~~D~VliSH~H~DH~~~--~~~--------- 68 (220) T 1vjn_A 19 GHACFALEM----EGKTIVTDPFDES-----VGY--PIPN--------VTADVVTESHQHFDHNAH--HLV--------- 68 (220) T ss_dssp ETTEEEEEE----TTEEEEESCCC------------CCCC--------CBCSEEECSSCC---CGG--GGC--------- T ss_pred ECCEEEEEE----CCEEEEECCCCCC-----CCC--CCCC--------CCCCEEEECCCCCCCCCH--HHC--------- T ss_conf 031999998----9999998999887-----789--8777--------878899966878676751--231--------- Q ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCC------CCCEEEEEECCCEEEECCCCEECCC Q ss_conf 9999999999998548865562255175555776348999985567777------6535679876817998334024677 Q gi|254780869|r 98 SPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIP------ETMALVIRSPVGNIVHTGDWKLDDD 171 (559) Q Consensus 98 s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip------~a~~~~I~t~~g~i~ytGDfk~d~~ 171 (559) ......+..+..+++++++|+.+++.|+-. .+++|+|+.++.+|+|+||- T Consensus 69 -------------------~~~~~v~~~~g~~~~~~~~I~~v~a~H~~~~~~~~g~~~~~~ie~~g~~I~~~GDt----- 124 (220) T 1vjn_A 69 -------------------KGNFRVIDRPGAYTVNGVKIKGVETFHDPSHGRERGKNIVFVFEGEGIKVCHLGDL----- 124 (220) T ss_dssp -------------------BSSCEEECSSEEEEETTEEEEEEEEEEC-------CEEEEEEEEETTEEEEECTTC----- T ss_pred -------------------CCCEEEECCCCEEEECCEEECCCCCEECCCCCCCCCCCEEEEEECCCEEEEEECCC----- T ss_conf -------------------46269960456599798221243206518888547875799998499299996898----- Q ss_pred CCCCCCCCHHHHHHCCCCCCEEEEEC Q ss_conf 66542389889986087882999963 Q gi|254780869|r 172 AILGDVTDKDSLCAIGNEGILALMCD 197 (559) Q Consensus 172 p~~g~~~d~~~l~~~~~~gv~~Li~e 197 (559) +...+...+.++++ +|+++.- T Consensus 125 ---~~~~~~~~~~~~~~--~Dva~lP 145 (220) T 1vjn_A 125 ---GHVLTPAQVEEIGE--IDVLLVP 145 (220) T ss_dssp ---CSCCCHHHHHHHCC--CSEEEEE T ss_pred ---CCCCCHHHHHHHCC--CCEEEEE T ss_conf ---88989999985289--7689994 No 54 >3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Probab=98.53 E-value=1.5e-06 Score=64.55 Aligned_cols=52 Identities=31% Similarity=0.459 Sum_probs=34.3 Q ss_pred CCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHH----HHHCCCEEEEECCCCCCCCCHHHHHH Q ss_conf 68346606999951777864899977676788876750287079579876----64124689960543012160788898 Q gi|254780869|r 14 VGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMK----ERKNLMAIFITHAHEDHYGALHDLWS 89 (559) Q Consensus 14 ~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~----~~~~i~~i~iTH~H~DHiGalp~l~~ 89 (559) ..|-|-++++ +. ||+|||.. . .++++ +.+.+++|||||.|.||+|+++.|+. T Consensus 28 ~~e~G~s~~i-----e~----iL~D~G~~---~------------~~~~n~~~lgId~~daV~lTH~H~DH~gGl~~L~~ 83 (267) T 3h3e_A 28 ESEHGFSVLV-----DS----VLFDTGKS---D------------VFLKNARKLGIDLPKDVLISHGHYDHAGGLLYLSG 83 (267) T ss_dssp CCCSSCEEEE-----TT----EEECCCSS---S------------HHHHHHHHTTCCCCSEEECSCSCHHHHGGGGGCCS T ss_pred CCCCEEEEEE-----CC----EEEECCCC---H------------HHHHHHHHCCCCHHHCEEEECCCHHHCCCHHHHHH T ss_conf 1462255444-----52----89979999---7------------99999998499846848981455311078899987 No 55 >2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Probab=98.53 E-value=3.5e-07 Score=69.12 Aligned_cols=121 Identities=15% Similarity=0.120 Sum_probs=77.7 Q ss_pred CCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCC Q ss_conf 83466069999517778648999776767888767502870795798766412468996054301216078889862997 Q gi|254780869|r 15 GEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVP 94 (559) Q Consensus 15 ~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~iTH~H~DHiGalp~l~~~~~~p 94 (559) ...+.|||++. ..+..++||+|-. .+. ...+|.+. ..++.|++||.| |+|++..+...+++| T Consensus 20 ~~~~~n~~lv~----~~~g~vlIDp~~~---~~~--------~~~~l~~~-g~v~~iv~TH~d--H~g~~~~~~~~~~a~ 81 (201) T 2p97_A 20 RNIDFNGFAWI----RPEGNILIDPVAL---SNH--------DWKHLESL-GGVVWIVLTNSD--HVRSAKEIADQTYTK 81 (201) T ss_dssp TTEEEEEEEEC----CTTCCEEESCCCC---CHH--------HHHHHHHT-TCCSEEECSSGG--GCTTHHHHHHHSCCE T ss_pred CCCCEEEEEEE----ECCEEEEEECCCC---CHH--------HHHHHHHC-CCCEEEEECCHH--HHHHHHHHHHHHCCC T ss_conf 75230899999----8998599949988---199--------99999856-996499988888--988999999987990 Q ss_pred EECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEEECCCEEEECCCCEE Q ss_conf 79299999999999985488655622551755557763489999855677776535679876817998334024 Q gi|254780869|r 95 VYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKL 168 (559) Q Consensus 95 IY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~~~I~t~~g~i~ytGDfk~ 168 (559) ||+++.... ..+......+..++.+..| +++-..|-.| .||++.+.. + .+++||||.-+ T Consensus 82 i~~~~~~~~----------~~~~~~d~~~~dg~~~~~g-~~vi~~pG~H-t~g~v~~~~--~-~~~Lf~GD~l~ 140 (201) T 2p97_A 82 IAGPVAEKE----------NFPIYCDRWLSDGDELVPG-LKVMELQGSK-TPGELALLL--E-ETTLITGDLVR 140 (201) T ss_dssp EEEEGGGTT----------SCSSCCSEEECTTCBSSTT-EEEEEECSSS-STTEEEEEE--T-TTEEEECSSEE T ss_pred EEECCCCCC----------CCCCCCCEEECCCCEEEEE-EEEEEECCCC-CCCCCCEEE--C-CCEEEECCEEC T ss_conf 993142133----------3567898884268886501-7999947888-999843330--3-56399898815 No 56 >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* Probab=96.43 E-value=0.024 Score=34.39 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=48.5 Q ss_pred CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHH Q ss_conf 3026896699996158861778999997651031134303566641315788978999999754953999704--57799 Q gi|254780869|r 320 VKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIH--GEPLH 397 (559) Q Consensus 320 i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvH--Ge~rh 397 (559) +.+++||.||+++..-|. +.+.+...|++++.-|.+. -|+.-+.++++..+. -+++.+|++| |-.-. T Consensus 70 l~~~~gdeVi~~~~t~~a-------~~~~i~~~G~~pvf~Dvd~---~~~~id~~~l~~~it-~~tkaIi~~h~~G~~~d 138 (367) T 3nyt_A 70 LGVGPGDEVITPGFTYVA-------TAETVALLGAKPVYVDIDP---RTYNLDPQLLEAAIT-PRTKAIIPVSLYGQCAD 138 (367) T ss_dssp TTCCTTCEEEEESSSCTH-------HHHHHHHTTCEEEEECBCT---TTCSBCGGGTGGGCC-TTEEEECCBCGGGCCCC T ss_pred HCCCCCCEEEECCCCCHH-------HHHHHHHCCCEEEEEECCC---CCCCCCHHHHHHHCC-CCCEEEEEECCCCCHHH T ss_conf 089994999846866536-------8999998399799994479---868859999997558-26739999478787889 Q ss_pred HHHHHHHHHHCCCC Q ss_conf 99999878744786 Q gi|254780869|r 398 LVAHKELALQEGIA 411 (559) Q Consensus 398 l~~h~~la~~~gv~ 411 (559) +.+-.++|++.|+. T Consensus 139 ~~~I~~~~~~~~i~ 152 (367) T 3nyt_A 139 FDAINAIASKYGIP 152 (367) T ss_dssp HHHHHHHHHHTTCC T ss_pred HHHHHHHHHHCCCE T ss_conf 99999999984986 No 57 >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* Probab=95.02 E-value=0.082 Score=30.53 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=8.5 Q ss_pred CCEEEEECHHHHHHHHHHHHCC Q ss_conf 8869984486999999887428 Q gi|254780869|r 251 GRKIVLLGSSLKRVVSVAIDVG 272 (559) Q Consensus 251 ~R~v~i~Grs~~~~~~~a~~~g 272 (559) |-.|.+...+.......+...| T Consensus 96 gDeVi~p~~~~~~~~~~i~~~g 117 (391) T 3dr4_A 96 GDEVIVPSLTYIASANSVTYCG 117 (391) T ss_dssp TCEEEEESSSCTHHHHHHHHTT T ss_pred CCEEEECCCHHHHHHHHHHHCC T ss_conf 1999989860232107887579 No 58 >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} Probab=93.95 E-value=0.32 Score=26.30 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=9.3 Q ss_pred CCEEEEECHHHHHHHHHHHHCC Q ss_conf 8869984486999999887428 Q gi|254780869|r 251 GRKIVLLGSSLKRVVSVAIDVG 272 (559) Q Consensus 251 ~R~v~i~Grs~~~~~~~a~~~g 272 (559) |-.|.+-.-+......+....| T Consensus 76 gdeVi~p~~t~~a~~~ai~~~G 97 (373) T 3frk_A 76 GDEVIVPSNTFIATALAVSYTG 97 (373) T ss_dssp TCEEEEETTSCTHHHHHHHHHS T ss_pred CCEEEECCCCCHHHHHHHHHCC T ss_conf 6999967874030132675146 No 59 >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* Probab=93.14 E-value=0.43 Score=25.37 Aligned_cols=78 Identities=21% Similarity=0.237 Sum_probs=27.3 Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHH Q ss_conf 026896699996158861778999997651031134303566641315788978999999754953999704--577999 Q gi|254780869|r 321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIH--GEPLHL 398 (559) Q Consensus 321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvH--Ge~rhl 398 (559) .+++||.||.++...+. +.+.+...|++.+.-|.+. -++.-+.++++..+.- +++.++||| |-.-.+ T Consensus 99 ~i~~gdeVi~p~~t~~a-------t~~ai~~~G~~pvf~Dv~~---~~~~id~~~l~~~i~~-~tkaIi~vh~~G~~~d~ 167 (399) T 2oga_A 99 GIGPGDEVIVPSHTYIA-------SWLAVSATGATPVPVEPHE---DHPTLDPLLVEKAITP-RTRALLPVHLYGHPADM 167 (399) T ss_dssp TCCTTCEEEEESSSCTH-------HHHHHHHTTCEEEEECBCS---SSSSBCHHHHHHHCCT-TEEEECCBCGGGCCCCH T ss_pred CCCCCCEEEECCCCHHH-------HHHHHHHHCCCEEEEECCC---CCCCCCHHHHHHHHCC-CCEEEEEECCCCCCCCH T ss_conf 99994999979934073-------5779986148718962333---1135888999987276-65089852788980036 Q ss_pred HHHHHHHHHCC Q ss_conf 99998787447 Q gi|254780869|r 399 VAHKELALQEG 409 (559) Q Consensus 399 ~~h~~la~~~g 409 (559) .+-.++|++.| T Consensus 168 ~~i~~i~k~~~ 178 (399) T 2oga_A 168 DALRELADRHG 178 (399) T ss_dssp HHHHHHHHHHT T ss_pred HHHHHHHHHCC T ss_conf 99999999739 No 60 >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* Probab=92.41 E-value=0.53 Score=24.70 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=34.4 Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHH Q ss_conf 026896699996158861778999997651031134303566641315788978999999754953999704--577999 Q gi|254780869|r 321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIH--GEPLHL 398 (559) Q Consensus 321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvH--Ge~rhl 398 (559) .+++||.||.++-.-+. +.+.+...|++++.-|.+.. ++.-+.++++..+. -+.|.++||| |-.-.+ T Consensus 75 ~~~~gdeVi~p~~t~~a-------~~~ai~~~g~~pv~~Di~~~---~~~~d~~~l~~~i~-~~tkaii~~h~~G~~~d~ 143 (393) T 1mdo_A 75 GIGEGDEVITPSMTWVS-------TLNMIVLLGANPVMVDVDRD---TLMVTPEHIEAAIT-PQTKAIIPVHYAGAPADL 143 (393) T ss_dssp TCCTTCEEEEESSSCHH-------HHHHHHHTTCEEEEECBCTT---TCCBCHHHHHHHCC-TTEEEECCBCGGGCCCCH T ss_pred CCCCCCEEECCCCEEHH-------HHHHHHCCCCEEEEECCCCC---CCCCCHHHHHHHHC-CCCEEEEECCCCCCEECH T ss_conf 99998989717963131-------13224237978997025432---24588999997407-783499713767833168 Q ss_pred HHHHHHHHHCCC Q ss_conf 999987874478 Q gi|254780869|r 399 VAHKELALQEGI 410 (559) Q Consensus 399 ~~h~~la~~~gv 410 (559) .+-+++|++-|+ T Consensus 144 ~~i~~i~~~~~i 155 (393) T 1mdo_A 144 DAIYALGERYGI 155 (393) T ss_dssp HHHHHHHHHHTC T ss_pred HHHHHHHHHCCC T ss_conf 999988874295 No 61 >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; X-RAY, aspartate aminotransferase, colitose, perosamine, O- antigen, PLP; HET: G4M; 1.70A {Escherichia coli O55} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* Probab=92.19 E-value=0.56 Score=24.52 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=51.9 Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHH Q ss_conf 026896699996158861778999997651031134303566641315788978999999754953999704--577999 Q gi|254780869|r 321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIH--GEPLHL 398 (559) Q Consensus 321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvH--Ge~rhl 398 (559) .+++||.||.++-.-|. +.+.+...|++++.-|.+.. +..-+.++++..+. -+++-++||| |-.-.+ T Consensus 76 ~~~~gdeVi~p~~t~~a-------t~~ai~~~G~~pv~~Did~~---t~~id~~~l~~~i~-~~tkaIi~vh~~G~~~d~ 144 (390) T 3b8x_A 76 RLKKGDEIIVPAVSWST-------TYYPLQQYGLRVKFVDIDIN---TLNIDIESLKEAVT-DSTKAILTVNLLGNPNNF 144 (390) T ss_dssp SCCTTCEEEEESSSCHH-------HHHHHHHTTCEEEEECBCTT---TCSBCHHHHHHHCC-TTEEEEEEECGGGCCCCH T ss_pred CCCCCCEEEECCCCHHH-------HHHHHHHCCCEEEEEECCCC---CCCCCHHHHHHHHC-CCCEEEEEECCCCCCCCH T ss_conf 88999989967760086-------49999876998998726654---31347899998742-487053300567884678 Q ss_pred HHHHHHHHHCCC Q ss_conf 999987874478 Q gi|254780869|r 399 VAHKELALQEGI 410 (559) Q Consensus 399 ~~h~~la~~~gv 410 (559) .+-.++|++.|+ T Consensus 145 ~~I~~i~~~~~i 156 (390) T 3b8x_A 145 DEINKIIGGRDI 156 (390) T ss_dssp HHHHHHHTTSCC T ss_pred HHHHHHHHHCCC T ss_conf 999999987298 No 62 >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* Probab=92.00 E-value=0.59 Score=24.37 Aligned_cols=153 Identities=11% Similarity=0.132 Sum_probs=68.5 Q ss_pred CCCCCCCCCCC----CCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHH-HHHCCEEEEECHHHHHHHHHHHHC Q ss_conf 35645788877----7787999999999862798399994147789999999999-871886998448699999988742 Q gi|254780869|r 197 DSTNAMREGTC----ISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIA-EQIGRKIVLLGSSLKRVVSVAIDV 271 (559) Q Consensus 197 esT~~~~~~~~----~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a-~~~~R~v~i~Grs~~~~~~~a~~~ 271 (559) +|++....+.. +--.++++.+.+.+ +.+. ++..+.+ -.-+.-++.+. .+-|-.|.+-..+......+.... T Consensus 27 ~sg~~~~~~~~~~~g~~~~~fE~~~a~~~-g~k~-ai~~~sg--T~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~i~~~ 102 (418) T 2c81_A 27 QSNRWAISGYWTGEESMERKFAKAFADFN-GVPY-CVPTTSG--STALMLALEALGIGEGDEVIVPSLTWIATATAVLNV 102 (418) T ss_dssp HHTCCSTTSBCCSSCCHHHHHHHHHHHHH-TCSE-EEEESCH--HHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCE-EEEECCH--HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHC T ss_conf 71973035840589869999999999997-8595-9997787--999999999849897199998997509999999983 Q ss_pred CC----CC--CCCCCCCHHHHCCCCCCC-EEEEEECCCCC--HHHHHHHHCCCC---------C------CCCCC-CCCC Q ss_conf 87----67--765422656622388020-89999669632--688988520277---------7------65302-6896 Q gi|254780869|r 272 GI----IK--KDQLFLSDESFGLYPREQ-LIVIATGSQGE--PRSALAQLSRGE---------M------RNVKL-AEKD 326 (559) Q Consensus 272 g~----l~--~~~~~i~~~~~~~~p~~~-~~ii~TGsqge--~~a~l~ria~~~---------~------~~i~l-~~~D 326 (559) |. ++ .....++.+.++....++ ..++.+..-|. ....+..+|... | ..-.+ .-|| T Consensus 103 g~~pv~~Di~~~~~~~~~~~~~~~~~~~t~ai~~vh~~G~~~d~~~I~~ia~~~~i~vIeD~a~a~g~~~~g~~~G~~gd 182 (418) T 2c81_A 103 NALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPVHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGD 182 (418) T ss_dssp TCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECCBCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSS T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCHHHCCEECCEEECCCCE T ss_conf 99877731456411134588999734676226753047751579999999998498899737544188069856146731 Q ss_pred EEEEE---EECCCC--------HHHHHHHHHHHHHCCC Q ss_conf 69999---615886--------1778999997651031 Q gi|254780869|r 327 TVIFS---SRAIPG--------NEVAIGHIKNRLVEQG 353 (559) Q Consensus 327 ~vI~s---s~~ipG--------nE~~~~~~~n~l~~~g 353 (559) .-+|| ++.+++ |.+..+..+..+...| T Consensus 183 ~~~~Sf~~~K~i~~geGG~i~t~d~~~~~~~~~lr~~g 220 (418) T 2c81_A 183 IGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADS 220 (418) T ss_dssp EEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTT T ss_pred EEEEECCCCEEECCCCCCEEECCCHHHHHHHHHHHHHC T ss_conf 89981667815613788611069878999999999708 No 63 >3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A Probab=90.38 E-value=0.35 Score=26.01 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=42.8 Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHH Q ss_conf 026896699996158861778999997651031134303566641315788978999999754953999704--577999 Q gi|254780869|r 321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIH--GEPLHL 398 (559) Q Consensus 321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~~IPvH--Ge~rhl 398 (559) -+++||-||.++-.-| .+.+.+...|++.+.-|.+.. +..-+.++++..+. -++|.+|||| |-.-.+ T Consensus 106 gl~~gdeVivp~~t~~-------at~~ai~~~Ga~pvf~Did~~---t~~id~~~le~~it-~ktkaIi~vh~~G~~~d~ 174 (437) T 3bb8_A 106 ALKPGDEVITVAAGFP-------TTVNPTIQNGLIPVFVDVDIP---TYNVNASLIEAAVS-DKTKAIMIAHTLGNLFDL 174 (437) T ss_dssp SCCTTCEEEECSSSCH-------HHHHHHHHTTCEEEECCEETT---TTEECGGGHHHHCC-TTEEEEEEECGGGCCCCH T ss_pred CCCCCCEEEECCCCHH-------HHHHHHHHCCCEEEEEECCCC---CCCCCHHHHHHHHC-CCCCEEEEECCCCCCCCH T ss_conf 6799899998596479-------999999985998999304566---43221899998724-697389984577763334 Q ss_pred HHHHHHHHHCCC Q ss_conf 999987874478 Q gi|254780869|r 399 VAHKELALQEGI 410 (559) Q Consensus 399 ~~h~~la~~~gv 410 (559) .+-.++|++.|+ T Consensus 175 ~~i~~ia~~~~i 186 (437) T 3bb8_A 175 AEVRRVADKYNL 186 (437) T ss_dssp HHHHHHHHHHTC T ss_pred HHHHHHHHHCCC T ss_conf 899999998598 No 64 >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, structural genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} Probab=89.77 E-value=0.68 Score=23.90 Aligned_cols=13 Identities=8% Similarity=-0.371 Sum_probs=4.8 Q ss_pred CCCCHHHHHHHHH Q ss_conf 7889789999997 Q gi|254780869|r 369 GHPYPNDLKRMYQ 381 (559) Q Consensus 369 GHa~~edl~~li~ 381 (559) +..+.++++..+. T Consensus 112 ~~id~~~l~~~I~ 124 (377) T 3ju7_A 112 WYMDKTVLWDKIE 124 (377) T ss_dssp CSBCHHHHHHHHH T ss_pred CCCCHHHHHHHHH T ss_conf 7728899999986 No 65 >2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus HB8} Probab=86.93 E-value=1.4 Score=21.70 Aligned_cols=165 Identities=13% Similarity=0.094 Sum_probs=77.0 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHH-HHHHHHHHHHHCCEEEEE-CHH----HHHHHHHH---HHCCCCCC Q ss_conf 7777879999999998627983999941477899-999999998718869984-486----99999988---74287677 Q gi|254780869|r 206 TCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSR-IRSIIDIAEQIGRKIVLL-GSS----LKRVVSVA---IDVGIIKK 276 (559) Q Consensus 206 ~~~sE~~v~~~i~~~~~~~~grViv~~fasni~R-i~~i~~~a~~~~R~v~i~-Grs----~~~~~~~a---~~~g~l~~ 276 (559) ..||-.++.+.++++.++. ..|++-+.||.+.- .+.+..+|++...+|.+. .++ +.-.+.-| .+.|. +. T Consensus 62 S~Ps~~~~~~~f~~~~~~~-d~ii~i~iSs~lSgty~~a~~aa~~~~~~I~ViDS~~~s~~~g~lv~~a~~~~~~G~-s~ 139 (280) T 2dt8_A 62 SQPSPEDFARVYREALEEA-DHVLSLHISGKLSGTVQSAELAAQEFPGRVTVVDTQAASLGVGMMVLRAKELLEEGQ-SL 139 (280) T ss_dssp ECCCHHHHHHHHHHHTTSC-SEEEEEESCTTTCTHHHHHHHHHTTSTTSEEEEECSCCTHHHHHHHHHHHHHHHHTC-CH T ss_pred CCCCHHHHHHHHHHHHCCC-CCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCC-CH T ss_conf 7999999999999973589-858999777337689999999998689989998599611899999999999998398-99 Q ss_pred CCCCCCHHHHCCCCCCCEEEEEECCC------CCHHHHHHHHCC--CCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH Q ss_conf 65422656622388020899996696------326889885202--7776530268966999961588617789999976 Q gi|254780869|r 277 DQLFLSDESFGLYPREQLIVIATGSQ------GEPRSALAQLSR--GEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNR 348 (559) Q Consensus 277 ~~~~i~~~~~~~~p~~~~~ii~TGsq------ge~~a~l~ria~--~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~ 348 (559) +. + .+.+..+.++-.+.++-.+- |+.-.+.+.+++ +-.+.++++.|....+ .-..|.++++.++++. T Consensus 140 ~e-i--~~~l~~~~~~~~~~f~v~~L~~L~kgGRis~~~a~ig~~L~IkPIl~~~~G~~~~~--~k~Rg~kka~~~~~~~ 214 (280) T 2dt8_A 140 EA-V--LAELERLRRDHFVRFSVATLEFLKRGGRIGGAQAFLGTLLNLKPVLTLKEGRVEAA--GRARGEKKAREEILKA 214 (280) T ss_dssp HH-H--HHHHHHHHHSCEEEEECSCSHHHHHHTCCGGGGGGTTTCTTSEEEEEEETTEEEEE--EEESSHHHHHHHHHHH T ss_pred HH-H--HHHHHHHHHHCEEEEEECCHHHHHHCCCCCHHHHHHHHHHCCEEEEEECCCCEEEE--ECCCCHHHHHHHHHHH T ss_conf 99-9--99999988515899995857999768976178999987519589999759968982--1146699999999999 Q ss_pred HHCCCEEEEECCCCCCEECCCCCCHHHHHHHHH Q ss_conf 510311343035666413157889789999997 Q gi|254780869|r 349 LVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQ 381 (559) Q Consensus 349 l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~ 381 (559) +.+...+ .....+.+..+.+.++..++.+ T Consensus 215 ~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~ 243 (280) T 2dt8_A 215 FRAWAEG----RKRIRAYFLYSGDEDAVAALRQ 243 (280) T ss_dssp HHHHHTT----CSCEEEEEEESSCTHHHHHHHH T ss_pred HHHHHCC----CCCEEEEEEECCCHHHHHHHHH T ss_conf 9987338----8870899997899899999999 No 66 >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; 1.50A {Hahella chejuensis} Probab=86.35 E-value=1.2 Score=22.16 Aligned_cols=77 Identities=21% Similarity=0.203 Sum_probs=53.9 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHHHC Q ss_conf 89889986----08788299996356457888777787999999999862798--3999941477899999999998718 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG--CVLVTTFSSSVSRIRSIIDIAEQIG 251 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g--rViv~~fasni~Ri~~i~~~a~~~~ 251 (559) .|+..+.+ +-+.||+.+++-+|.++. .+.|+.+-.+-++.+.+..++ .|++.+.+.+.....+..+.|++.| T Consensus 18 iD~~~~~~~i~~l~~~Gv~gi~v~G~tGE~--~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~ai~~a~~a~~~G 95 (297) T 2rfg_A 18 VDEKALAGLVDWQIKHGAHGLVPVGTTGES--PTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAG 95 (297) T ss_dssp ECHHHHHHHHHHHHHTTCSEEECSSGGGTG--GGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEECCCH--HHCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHC T ss_conf 899999999999997799999979233145--348999999999998997189970999688601999999999999809 Q ss_pred CEEEE Q ss_conf 86998 Q gi|254780869|r 252 RKIVL 256 (559) Q Consensus 252 R~v~i 256 (559) =.-++ T Consensus 96 ~d~i~ 100 (297) T 2rfg_A 96 ADAVL 100 (297) T ss_dssp CSEEE T ss_pred CCEEE T ss_conf 99897 No 67 >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} Probab=86.22 E-value=1.5 Score=21.45 Aligned_cols=77 Identities=21% Similarity=0.189 Sum_probs=56.1 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC Q ss_conf 89889986----087882999963564578887777879999999998627983--999941477899999999998718 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559) .|+..+.+ +-+.||+.+++-+|. .++.+.|..+-.+-++.+.+.+++| |++.+.+.+.......++.|++.| T Consensus 18 iD~~~l~~~i~~li~~Gv~Gi~~~G~t--GE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G 95 (294) T 2ehh_A 18 VDYEALGNLIEFHVDNGTDAILVCGTT--GESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVG 95 (294) T ss_dssp ECHHHHHHHHHHHHTTTCCEEEESSTT--TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEEC--CCHHHCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCC T ss_conf 899999999999997599989978554--334348999999999999997389987899817845999999999999769 Q ss_pred CEEEE Q ss_conf 86998 Q gi|254780869|r 252 RKIVL 256 (559) Q Consensus 252 R~v~i 256 (559) =.-++ T Consensus 96 ad~i~ 100 (294) T 2ehh_A 96 ADGAL 100 (294) T ss_dssp CSEEE T ss_pred CCEEE T ss_conf 99999 No 68 >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} Probab=86.02 E-value=1.5 Score=21.38 Aligned_cols=118 Identities=9% Similarity=0.117 Sum_probs=58.8 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCC----CC--CCCCCCCH Q ss_conf 8799999999986279839999414778999999999987188699844869999998874287----67--76542265 Q gi|254780869|r 210 EKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGI----IK--KDQLFLSD 283 (559) Q Consensus 210 E~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~----l~--~~~~~i~~ 283 (559) -.++++.+.+.+ +.+. ++..+.+ -.-++.++.+. ..+..|.+-.-+......++...|. .+ +....++. T Consensus 54 v~~fE~~la~~~-g~k~-av~~sSG--T~AL~lal~al-~~~deVivp~~t~~at~~ai~~~G~~pvfvDid~~t~~~d~ 128 (424) T 2po3_A 54 VREFEERVAGLA-GVRH-AVATCNA--TAGLQLLAHAA-GLTGEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDP 128 (424) T ss_dssp HHHHHHHHHHHH-TSSE-EEEESCH--HHHHHHHHHHH-TCCSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCH T ss_pred HHHHHHHHHHHH-CCCE-EEEECCH--HHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCH T ss_conf 999999999997-8295-9996677--99999999976-99698998797418459999977998999874144356889 Q ss_pred HHHCCCC-CCCEEEEEECCCCC--HHHHHHHHCCCCC---------------CCCCC-CCCCEEEEEE Q ss_conf 6622388-02089999669632--6889885202777---------------65302-6896699996 Q gi|254780869|r 284 ESFGLYP-REQLIVIATGSQGE--PRSALAQLSRGEM---------------RNVKL-AEKDTVIFSS 332 (559) Q Consensus 284 ~~~~~~p-~~~~~ii~TGsqge--~~a~l~ria~~~~---------------~~i~l-~~~D~vI~ss 332 (559) +.+...- ..-..++++-.-|. .+..+.++++... +.-.+ .-||..+||. T Consensus 129 ~~~~~~it~~t~aii~vh~~G~~~d~~~i~~iak~~~l~vIEDaA~a~Ga~~~g~~~Gs~Gd~~~fSF 196 (424) T 2po3_A 129 DQVAAAVTPRTSAVVGVHLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSF 196 (424) T ss_dssp HHHGGGCCTTEEEEEEECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEEC T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHCCCCCCEEECCCCCEEEECC T ss_conf 99986513575289985477875558899999998298598400443175329988445765332236 No 69 >1mgp_A Hypothetical protein TM841; two domain structure with mixed alpha/beta structures in BOTH domains, structural genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP: c.119.1.1 PDB: 1vpv_A* Probab=85.92 E-value=1.5 Score=21.34 Aligned_cols=171 Identities=12% Similarity=0.136 Sum_probs=79.7 Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHH-HHHHHHHHHHHCCEEEEEC-HH----HHHHH-HHH--HHCCCCCCC Q ss_conf 777879999999998627983999941477899-9999999987188699844-86----99999-988--742876776 Q gi|254780869|r 207 CISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSR-IRSIIDIAEQIGRKIVLLG-SS----LKRVV-SVA--IDVGIIKKD 277 (559) Q Consensus 207 ~~sE~~v~~~i~~~~~~~~grViv~~fasni~R-i~~i~~~a~~~~R~v~i~G-rs----~~~~~-~~a--~~~g~l~~~ 277 (559) .||-.++.+.++++.++---.|++-+.||.+.- .+.+..||+..+.+|.+.. ++ +.-.+ .++ .+.|. +.. T Consensus 90 qPs~~~~~~~~~~~~~~gyd~ii~i~lSs~LSgty~~a~~a~~~~~~~I~ViDS~~~s~~~g~lv~~a~~l~~~G~-s~e 168 (313) T 1mgp_A 90 QPSVEDFKKRYLKYKEEDYDVVLVLTLSSKLSGTYNSAVLASKEVDIPVYVVDTLLASGAIPLPARVAREMLENGA-TIE 168 (313) T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEEEESCTTTCSHHHHHHHHHHHSSSCEEEEECSCCGGGTHHHHHHHHHHHHTTC-CHH T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCC-CHH T ss_conf 9999999999999986699789999577517689999999986149958995276420779999999999998499-999 Q ss_pred CCCCCHHHHCCC-CCCCE-EEEEECCC------CCHHHHHHHHCC--CCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHH Q ss_conf 542265662238-80208-99996696------326889885202--777653026896699996158861778999997 Q gi|254780869|r 278 QLFLSDESFGLY-PREQL-IVIATGSQ------GEPRSALAQLSR--GEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKN 347 (559) Q Consensus 278 ~~~i~~~~~~~~-p~~~~-~ii~TGsq------ge~~a~l~ria~--~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n 347 (559) ... +.+..+ ++.++ .+++-.+- |+.-.+.+.+++ +-.+-+.++.|....+. -..|.++++.++++ T Consensus 169 eI~---~~l~~~~~~~~~~~~f~v~~L~~L~kgGRis~~~a~ig~lL~IkPIl~~~~G~i~~~~--K~Rg~kka~~~l~~ 243 (313) T 1mgp_A 169 EVL---KKLDERMKNKDFKAIFYVSNFDYLVKGGRVSKFQGFVGNLLKIRVCLHIENGELIPYR--KVRGDKKAIEALIE 243 (313) T ss_dssp HHH---HHHHHHHHTTCEEEEEEESCTHHHHHHTCC---------CTTEEEEEEEETTEEEEEE--EEESHHHHHHHHHH T ss_pred HHH---HHHHHHHHCCEEEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCEEEEEECCCEEEEEE--EEECHHHHHHHHHH T ss_conf 999---9999987437069999958899998689506899999861072699997097489975--54008899999999 Q ss_pred HHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCCCCE Q ss_conf 6510311343035666413157889789999997549539 Q gi|254780869|r 348 RLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQV 387 (559) Q Consensus 348 ~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ikPk~ 387 (559) .+.+...+ .....+..+.-.+.++..++.+.++-++ T Consensus 244 ~~~~~~~~----~~~~~i~i~~~~~~e~a~~l~~~l~~~~ 279 (313) T 1mgp_A 244 KLREDTPE----GSKLRVIGVHADNEAGVVELLNTLRKSY 279 (313) T ss_dssp HHHTTSCT----TCEEEEEEEESSCHHHHHHHHHHHTTTS T ss_pred HHHHHHCC----CCCEEEEEEECCCHHHHHHHHHHHHHHC T ss_conf 99986315----8971899994899999999999998667 No 70 >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} Probab=84.66 E-value=1.4 Score=21.56 Aligned_cols=77 Identities=22% Similarity=0.200 Sum_probs=52.8 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC Q ss_conf 89889986----087882999963564578887777879999999998627983--999941477899999999998718 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559) .|++.+.+ +-+.|++.++.-+|.++. ++.|..+-.+-++...+..+++ |++.+.+.+........+.|++.| T Consensus 18 iD~~~~~~~i~~l~~~Gv~gi~v~G~tGE~--~~Ls~eEr~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G 95 (292) T 2vc6_A 18 IDEVALHDLVEWQIEEGSFGLVPCGTTGES--PTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAG 95 (292) T ss_dssp ECHHHHHHHHHHHHHTTCSEEETTSGGGTG--GGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEECHHH--HHCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCC T ss_conf 299999999999997799999977041125--458999999999999987179861897368437999999999999769 Q ss_pred CEEEE Q ss_conf 86998 Q gi|254780869|r 252 RKIVL 256 (559) Q Consensus 252 R~v~i 256 (559) =.-++ T Consensus 96 ad~v~ 100 (292) T 2vc6_A 96 ADGVL 100 (292) T ss_dssp CSEEE T ss_pred CCEEE T ss_conf 99999 No 71 >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* Probab=84.46 E-value=1.8 Score=20.88 Aligned_cols=22 Identities=5% Similarity=-0.067 Sum_probs=8.9 Q ss_pred CCEEEEECHHHHHHHHHHHHCC Q ss_conf 8869984486999999887428 Q gi|254780869|r 251 GRKIVLLGSSLKRVVSVAIDVG 272 (559) Q Consensus 251 ~R~v~i~Grs~~~~~~~a~~~g 272 (559) |-.|.+-..+....+.++..+| T Consensus 72 gdeVi~p~~t~~~~~~~~~~~g 93 (394) T 1o69_A 72 DDIVLASSFTFIASVAPICYLK 93 (394) T ss_dssp TCEEEEESSSCGGGTHHHHHTT T ss_pred CCEEEECCCCCCEECHHHHHCC T ss_conf 6999938986010212365266 No 72 >3kl7_A Putative metal-dependent hydrolase; structural genomics, joint center for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Probab=84.02 E-value=0.44 Score=25.25 Aligned_cols=44 Identities=14% Similarity=0.125 Sum_probs=32.5 Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC Q ss_conf 57889789999997549539997045779999999878744786 Q gi|254780869|r 368 SGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIA 411 (559) Q Consensus 368 SGHa~~edl~~li~~ikPk~~IPvHGe~rhl~~h~~la~~~gv~ 411 (559) ..|-+.+|..++.+.++||++||+|=..-.+...++..++.|++ T Consensus 185 ~~~m~~~~A~~~~~~l~pk~viP~H~~~~~~~~~~~~~~~~g~~ 228 (235) T 3kl7_A 185 PYTMTVSQAAKAARMFSPKILYPYHYGDTKIGELKDALKDSGID 228 (235) T ss_dssp TTSCCHHHHHHHHHHHCCSEEEEESCTTCCTTHHHHHTTTSCCE T ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCC T ss_conf 77579999999999729999999568998889999999866996 No 73 >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MCSG, protein structure initiative; 1.20A {Agrobacterium tumefaciens str} Probab=82.10 E-value=2.2 Score=20.24 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=54.1 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC Q ss_conf 89889986----087882999963564578887777879999999998627983--999941477899999999998718 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559) .|+..+.+ +-+.||+.+++-+|.+ ++.+.|..+-.+-++.+.+..+++ |++.+-+.+.....+..+.|++.| T Consensus 21 iD~~~l~~~i~~l~~~Gv~gi~~~G~tG--E~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~t~~~i~~a~~a~~~G 98 (294) T 3b4u_A 21 VDIDAMIAHARRCLSNGCDSVTLFGTTG--EGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAG 98 (294) T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTT--TGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEECC--CHHHCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHCC T ss_conf 7999999999999977999999781253--35358999999999885552157775353147785999999999998749 Q ss_pred CEEEE Q ss_conf 86998 Q gi|254780869|r 252 RKIVL 256 (559) Q Consensus 252 R~v~i 256 (559) -.-++ T Consensus 99 ad~il 103 (294) T 3b4u_A 99 ARNIL 103 (294) T ss_dssp CSEEE T ss_pred CCEEE T ss_conf 97898 No 74 >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} Probab=81.32 E-value=2.3 Score=20.05 Aligned_cols=77 Identities=10% Similarity=0.094 Sum_probs=53.1 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC Q ss_conf 89889986----087882999963564578887777879999999998627983--999941477899999999998718 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559) .|++.+.+ +-+.||+.+++-+|. .+..+.|..+-.+-++.+.+..++| |++.+.+.+..-..+.++.|++.| T Consensus 34 iD~~~~~~~i~~li~~Gv~Gi~v~G~t--GE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~G 111 (304) T 3cpr_A 34 IDIAAGREVAAYLVDKGLDSLVLAGTT--GESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAG 111 (304) T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTT--TTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEEH--HHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCC T ss_conf 499999999999997699989978551--415558999999999999998368876786257412999999999999739 Q ss_pred CEEEE Q ss_conf 86998 Q gi|254780869|r 252 RKIVL 256 (559) Q Consensus 252 R~v~i 256 (559) =.-++ T Consensus 112 ad~i~ 116 (304) T 3cpr_A 112 ADGLL 116 (304) T ss_dssp CSEEE T ss_pred CCEEE T ss_conf 99999 No 75 >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A Probab=81.27 E-value=2.2 Score=20.17 Aligned_cols=77 Identities=22% Similarity=0.136 Sum_probs=52.2 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHHHC Q ss_conf 89889986----08788299996356457888777787999999999862798--3999941477899999999998718 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG--CVLVTTFSSSVSRIRSIIDIAEQIG 251 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g--rViv~~fasni~Ri~~i~~~a~~~~ 251 (559) .|+..+.+ +-+.||+.+++-+|. .++.+.|..+-.+-++.+.+..++ .+++.+.+.+.......++.|++.| T Consensus 26 iD~~~l~~~i~~l~~~Gv~gi~~~G~~--GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G 103 (309) T 3fkr_A 26 LDLASQKRAVDFMIDAGSDGLCILANF--SEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLG 103 (309) T ss_dssp BCHHHHHHHHHHHHHTTCSCEEESSGG--GTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEEC--CCHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCC T ss_conf 599999999999997599989978353--334657999999999999987179960899678786899999999974349 Q ss_pred CEEEE Q ss_conf 86998 Q gi|254780869|r 252 RKIVL 256 (559) Q Consensus 252 R~v~i 256 (559) =.-++ T Consensus 104 ~d~~l 108 (309) T 3fkr_A 104 AAMVM 108 (309) T ss_dssp CSEEE T ss_pred CCEEE T ss_conf 98788 No 76 >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A Probab=81.17 E-value=2.4 Score=20.02 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=50.5 Q ss_pred CCHHHHH----HCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCE Q ss_conf 8988998----608788299996356457888777787999999999862798399994147789999999999871886 Q gi|254780869|r 178 TDKDSLC----AIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRK 253 (559) Q Consensus 178 ~d~~~l~----~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~ 253 (559) .|+..+. .+-+.||+.+++-+|.+ ++.+.|..+-.+-++.+.+. .+.+++.+.+.+........+.|++.|=. T Consensus 16 iD~~~~~~~i~~l~~~Gv~Gl~~~GstG--E~~~Ls~~Er~~l~~~~~~~-~~~~i~gv~~~st~~~i~~a~~a~~~G~d 92 (286) T 2r91_A 16 LDPELFANHVKNITSKGVDVVFVAGTTG--LGPALSLQEKMELTDAATSA-ARRVIVQVASLNADEAIALAKYAESRGAE 92 (286) T ss_dssp ECHHHHHHHHHHHHHTTCCEEEETSTTT--TGGGSCHHHHHHHHHHHHHH-CSSEEEECCCSSHHHHHHHHHHHHHTTCS T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEECC--CHHHCCHHHHHHHHHHHHHH-CCCEEECCCCCCHHHHHHHHHHHHHCCCC T ss_conf 8999999999999977999999791265--61028999999999999974-24512111243258999999999986999 Q ss_pred EEE Q ss_conf 998 Q gi|254780869|r 254 IVL 256 (559) Q Consensus 254 v~i 256 (559) -++ T Consensus 93 ~i~ 95 (286) T 2r91_A 93 AVA 95 (286) T ss_dssp EEE T ss_pred EEE T ss_conf 898 No 77 >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* Probab=80.82 E-value=2.4 Score=19.94 Aligned_cols=78 Identities=23% Similarity=0.196 Sum_probs=54.4 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHHHC Q ss_conf 89889986----08788299996356457888777787999999999862798--3999941477899999999998718 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG--CVLVTTFSSSVSRIRSIIDIAEQIG 251 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g--rViv~~fasni~Ri~~i~~~a~~~~ 251 (559) .|++.+.+ +-+.||+.+++-+|.+ +..+.|..+-.+-++.+.+..++ .|++.+.+.+..-..+.++.|++.| T Consensus 19 iD~~~l~~~i~~l~~~Gv~Gi~~~G~tG--E~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G 96 (291) T 3a5f_A 19 VDFDKLSELIEWHIKSKTDAIIVCGTTG--EATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIG 96 (291) T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSGGG--TGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCH--HHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCC T ss_conf 0999999999999977999999890011--16569999999999999986476653898767851999999999999708 Q ss_pred CEEEEE Q ss_conf 869984 Q gi|254780869|r 252 RKIVLL 257 (559) Q Consensus 252 R~v~i~ 257 (559) =.-++. T Consensus 97 ad~i~v 102 (291) T 3a5f_A 97 VDGLLV 102 (291) T ss_dssp CSEEEE T ss_pred CCEEEE T ss_conf 997998 No 78 >3fxa_A SIS domain protein; YP_013136.1, putative sugar-phosphate isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Listeria monocytogenes str} Probab=79.18 E-value=2.6 Score=19.72 Aligned_cols=11 Identities=36% Similarity=0.495 Sum_probs=4.2 Q ss_pred HHHCCEEEEEC Q ss_conf 87188699844 Q gi|254780869|r 248 EQIGRKIVLLG 258 (559) Q Consensus 248 ~~~~R~v~i~G 258 (559) .++.++|+++| T Consensus 42 ~~a~~rI~~~G 52 (201) T 3fxa_A 42 AECTGKIVVAG 52 (201) T ss_dssp HHCSSCEEEEC T ss_pred HHCCCCEEEEE T ss_conf 80899389997 No 79 >3noe_A DAP-A, dihydrodipicolinate synthase; Lys biosynthesis pathway, lyase; 2.95A {Pseudomonas aeruginosa} Probab=77.66 E-value=3 Score=19.27 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=53.8 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC Q ss_conf 89889986----087882999963564578887777879999999998627983--999941477899999999998718 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559) .|+..+.+ +-+.||+.+..-+|.+ ++.+.|+.+-.+-++.+.+.++|| |++.+.+.+.......++.|++.| T Consensus 19 iD~~~~~~~i~~li~~Gv~gi~i~G~tG--E~~~Ls~~Er~~l~~~~~~~~~g~~~vi~gv~~~s~~~~i~~a~~a~~~G 96 (292) T 3noe_A 19 LDWDSLAKLVDFHLQDGTNAIVAVGTTG--ESATLDVEEHIQVVRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGG 96 (292) T ss_dssp BCHHHHHHHHHHHHHHTCSEEEESSTTT--TGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHTTT T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEECC--HHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCC T ss_conf 5999999999999985999899885752--26669999999999999997258886898558755999999999999849 Q ss_pred CEEEE Q ss_conf 86998 Q gi|254780869|r 252 RKIVL 256 (559) Q Consensus 252 R~v~i 256 (559) =.-++ T Consensus 97 ad~v~ 101 (292) T 3noe_A 97 ADACL 101 (292) T ss_dssp CSEEE T ss_pred CCEEE T ss_conf 99999 No 80 >2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Probab=77.52 E-value=1.7 Score=21.09 Aligned_cols=84 Identities=17% Similarity=0.206 Sum_probs=48.6 Q ss_pred ECCCCCCEEEEEECCCCCCCC-----CCCCEEE-ECC-CHHHHHHHHHCCCEEEEECCCCCCCC--CHHHHHH--HCCCC Q ss_conf 517778648999776767888-----7675028-707-95798766412468996054301216--0788898--62997 Q gi|254780869|r 26 YGSPSSRKWIMIDCGVSFPKD-----DLPGVDL-VFP-DITFIMKERKNLMAIFITHAHEDHYG--ALHDLWS--FLHVP 94 (559) Q Consensus 26 ~~~~~~~~~iiiD~G~~fp~~-----~~~gid~-iiP-d~~~l~~~~~~i~~i~iTH~H~DHiG--alp~l~~--~~~~p 94 (559) |....++.+++||+|.+|... -.+|+.. |+| |.+.-+-...+.+||+||=+-.+-.- ....... ..+.| T Consensus 19 ~~~~~~~~I~iiDfGsq~~~lI~R~lrelgv~~eI~p~~~~~~~i~~~~~dgIIlSgGP~~~~~~~~~~~~~~~~~~~~P 98 (218) T 2vpi_A 19 YFQSMEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKP 98 (218) T ss_dssp ----CTTCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCCHHHHHHHTCSEEEEEC---------CCCCCGGGGTSSCC T ss_pred ECCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCC T ss_conf 63168898999989964889999998716966999889999899985398989990999970124333110999838998 Q ss_pred EECCHHHHHHHHHHH Q ss_conf 792999999999999 Q gi|254780869|r 95 VYASPFAIGLLEAKR 109 (559) Q Consensus 95 IY~s~~t~~li~~~~ 109 (559) |.+-=+...+|-..+ T Consensus 99 ILGIClG~Qlla~a~ 113 (218) T 2vpi_A 99 VLGICYGMQMMNKVF 113 (218) T ss_dssp EEEETHHHHHHHHHT T ss_pred EEEEHHHHHHHHHHC T ss_conf 787179899999985 No 81 >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} Probab=76.16 E-value=3.3 Score=18.99 Aligned_cols=78 Identities=23% Similarity=0.271 Sum_probs=54.2 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC Q ss_conf 89889986----087882999963564578887777879999999998627983--999941477899999999998718 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559) .|++.+.+ +-+.||+.+++-+|. .++.+.|..+-.+-++.+.+..++| |++.+.+.+..-..+.++.|++.| T Consensus 18 iD~~~~~~~i~~~~~~Gv~gi~~~G~t--gE~~~Ls~~Er~~l~~~~~~~~~~r~~vi~g~~~~s~~~ai~~a~~a~~~G 95 (289) T 2yxg_A 18 VDFDGLEENINFLIENGVSGIVAVGTT--GESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVG 95 (289) T ss_dssp ECHHHHHHHHHHHHHTTCSEEEESSTT--TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEEC--CCHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCC T ss_conf 899999999999997699989978443--035448999999999999998289960897368745999999999999779 Q ss_pred CEEEEE Q ss_conf 869984 Q gi|254780869|r 252 RKIVLL 257 (559) Q Consensus 252 R~v~i~ 257 (559) =.-++. T Consensus 96 ad~v~v 101 (289) T 2yxg_A 96 ADAVLS 101 (289) T ss_dssp CSEEEE T ss_pred CCEEEE T ss_conf 999998 No 82 >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, cytoplasm; 2.00A {Neisseria meningitidis serogroup B} Probab=76.08 E-value=3.3 Score=18.98 Aligned_cols=78 Identities=15% Similarity=0.114 Sum_probs=52.8 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHHHC Q ss_conf 89889986----08788299996356457888777787999999999862798--3999941477899999999998718 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG--CVLVTTFSSSVSRIRSIIDIAEQIG 251 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g--rViv~~fasni~Ri~~i~~~a~~~~ 251 (559) .|++.+.+ +-+.|++.+.+-+|.++. .+.|..+-.+-++.+.+.+++ .+++.+.+.+..-..+..+.|++.| T Consensus 25 iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE~--~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G 102 (297) T 3flu_A 25 IHYEQLRDLIDWHIENGTDGIVAVGTTGES--ATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAG 102 (297) T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTG--GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCHHHHH--HHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 699999999999997699989968415637--769199999999999987036555456767563999999999999829 Q ss_pred CEEEEE Q ss_conf 869984 Q gi|254780869|r 252 RKIVLL 257 (559) Q Consensus 252 R~v~i~ 257 (559) =..++. T Consensus 103 ad~v~v 108 (297) T 3flu_A 103 ADYTLS 108 (297) T ss_dssp CSEEEE T ss_pred CCCCEE T ss_conf 987562 No 83 >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: MSE; 1.80A {Campylobacter jejuni} PDB: 3ler_A* Probab=76.03 E-value=3.3 Score=18.97 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=52.0 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC---CEEEEECHHHHHHHHHHHHHHHHH Q ss_conf 89889986----08788299996356457888777787999999999862798---399994147789999999999871 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG---CVLVTTFSSSVSRIRSIIDIAEQI 250 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g---rViv~~fasni~Ri~~i~~~a~~~ 250 (559) .|+..+.+ +-+.||+.++.=+|. .+..+.|..+-.+-++.+.+.++| .|++.+.+.+..-..+.++.|++. T Consensus 25 iD~~~l~~~i~~l~~~Gv~gl~v~G~t--GE~~~Ls~~Er~~l~~~~~~~~~~~~~~vi~gv~~~~~~~ai~la~~A~~~ 102 (301) T 3m5v_A 25 VDEQSYARLIKRQIENGIDAVVPVGTT--GESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEH 102 (301) T ss_dssp ECHHHHHHHHHHHHHTTCCEEECSSTT--TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEEC--CCHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHC T ss_conf 899999999999998499989968521--357668999999999999998358876389557766799999999999976 Q ss_pred CCEEEE Q ss_conf 886998 Q gi|254780869|r 251 GRKIVL 256 (559) Q Consensus 251 ~R~v~i 256 (559) |=.-++ T Consensus 103 Gad~i~ 108 (301) T 3m5v_A 103 GADGIL 108 (301) T ss_dssp TCSEEE T ss_pred CCCEEE T ss_conf 999987 No 84 >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, JCSG, PSI, protein structure initiative; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 Probab=75.89 E-value=3.3 Score=18.94 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=52.1 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC Q ss_conf 89889986----087882999963564578887777879999999998627983--999941477899999999998718 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559) .|++.+.+ +-+.|++.+++-+|.++ +.+.|..+-.+-++.+.+..+++ |++.+.+.+.....+.++.|++.| T Consensus 30 iD~~~~~~~i~~li~~Gv~gi~~~G~tGE--~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~ai~~a~~a~~~G 107 (306) T 1o5k_A 30 LDLESYERLVRYQLENGVNALIVLGTTGE--SPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLG 107 (306) T ss_dssp ECHHHHHHHHHHHHHTTCCEEEESSGGGT--GGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEEHHH--HHHCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCC T ss_conf 89999999999999769998996821342--5558999999999999985488888898468654999999999999569 Q ss_pred CEEEE Q ss_conf 86998 Q gi|254780869|r 252 RKIVL 256 (559) Q Consensus 252 R~v~i 256 (559) =.-++ T Consensus 108 ad~v~ 112 (306) T 1o5k_A 108 ANGVL 112 (306) T ss_dssp CSEEE T ss_pred CCEEE T ss_conf 99999 No 85 >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A Probab=74.64 E-value=3.6 Score=18.72 Aligned_cols=76 Identities=14% Similarity=0.257 Sum_probs=48.1 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCE Q ss_conf 89889986----08788299996356457888777787999999999862798399994147789999999999871886 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRK 253 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~ 253 (559) .|+..+.+ +-+.||+.++.-+|.++ +.+.|..+-.+-++.+.+. .+.+++.+.+.+.....+.++.|++.|-. T Consensus 17 iD~~~l~~~i~~l~~~Gv~Gi~v~GstGE--~~~Ls~eEr~~l~~~~~~~-~~~~i~~v~~~~t~~~~~~~~~a~~~G~d 93 (288) T 2nuw_A 17 VNVDALKTHAKNLLEKGIDAIFVNGTTGL--GPALSKDEKRQNLNALYDV-THKLIFQVGSLNLNDVMELVKFSNEMDIL 93 (288) T ss_dssp BCHHHHHHHHHHHHHTTCCEEEETSTTTT--GGGSCHHHHHHHHHHHTTT-CSCEEEECCCSCHHHHHHHHHHHHTSCCS T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEEHHH--HHHCCHHHHHHHHHHHHHH-CCCEEECCCCCHHHHHHHHHHHHHHHHHC T ss_conf 89999999999999859998997821254--7768999999999987664-03433124530089999999988775402 Q ss_pred EEE Q ss_conf 998 Q gi|254780869|r 254 IVL 256 (559) Q Consensus 254 v~i 256 (559) -++ T Consensus 94 ~~~ 96 (288) T 2nuw_A 94 GVS 96 (288) T ss_dssp EEE T ss_pred CCC T ss_conf 131 No 86 >1xxx_A DHDPS, dihydrodipicolinate synthase; DAPA, RV2753C, lysine biosynthesis, structural genomics, PSI protein structure initiative; 2.28A {Mycobacterium tuberculosis} SCOP: c.1.10.1 Probab=74.33 E-value=3.6 Score=18.67 Aligned_cols=70 Identities=9% Similarity=0.097 Sum_probs=49.9 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHHHCCEEEEE Q ss_conf 08788299996356457888777787999999999862798--3999941477899999999998718869984 Q gi|254780869|r 186 IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG--CVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL 257 (559) Q Consensus 186 ~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g--rViv~~fasni~Ri~~i~~~a~~~~R~v~i~ 257 (559) +-+.||+.+.+-+|.++. .+.|..+-.+-++.+.+.+++ .|++.+.+.+..-..+..+.|++.|=.-++. T Consensus 44 l~~~Gv~Gi~v~G~tGE~--~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~i~v 115 (303) T 1xxx_A 44 LVDQGCDGLVVSGTTGES--PTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLV 115 (303) T ss_dssp HHHTTCSEEEESSTTTTT--TTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEE T ss_pred HHHCCCCEEEECCHHHHH--HHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEE T ss_conf 997799989978134657--768799999999999999289874898457666899999999999716986999 No 87 >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} Probab=73.83 E-value=3 Score=19.26 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=52.1 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC Q ss_conf 89889986----087882999963564578887777879999999998627983--999941477899999999998718 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559) .|+..+.+ +-+.|++.+++-+|.+ ++.+.|..+-.+-++.+.+..++| |++.+.+.+..-.....+.|++.| T Consensus 22 iD~~~~~~~i~~l~~~Gv~gi~~~GttG--E~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G 99 (300) T 3eb2_A 22 VRADVMGRLCDDLIQAGVHGLTPLGSTG--EFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLG 99 (300) T ss_dssp BCHHHHHHHHHHHHHTTCSCBBTTSGGG--TGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECC--CHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCC T ss_conf 7999999999999975999899755324--36559999999999999986146885899457664889999997776449 Q ss_pred CEEEE Q ss_conf 86998 Q gi|254780869|r 252 RKIVL 256 (559) Q Consensus 252 R~v~i 256 (559) -.-++ T Consensus 100 ad~i~ 104 (300) T 3eb2_A 100 ADGIL 104 (300) T ss_dssp CSEEE T ss_pred CCEEE T ss_conf 81798 No 88 >1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* Probab=72.38 E-value=4 Score=18.35 Aligned_cols=31 Identities=19% Similarity=0.457 Sum_probs=17.5 Q ss_pred HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC Q ss_conf 999997549539997045779999999878744786 Q gi|254780869|r 376 LKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIA 411 (559) Q Consensus 376 l~~li~~ikPk~~IPvHGe~rhl~~h~~la~~~gv~ 411 (559) +..+-+++.-+ +|+-|=- .-|.-||...|-+ T Consensus 251 i~~i~~~~~~~--~PilGIC---LGhQll~~a~G~~ 281 (379) T 1a9x_B 251 ITAIQKFLETD--IPVFGIC---LGHQLLALASGAK 281 (379) T ss_dssp HHHHHHHTTSC--CCEEEET---HHHHHHHHHTTCC T ss_pred HHHHHHHHHCC--CCEEEEE---HHHHHHHHHHCCE T ss_conf 99999998169--9889974---7789999983973 No 89 >2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar binding protein, DNAA binding protein; 1.85A {Escherichia coli} Probab=72.37 E-value=3.9 Score=18.49 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=59.0 Q ss_pred HHHHHHHHHHHHHHHHHCCEEEEECH--HHHHHHHHHHHC-CCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHH Q ss_conf 47789999999999871886998448--699999988742-876776542265662238802089999669632688988 Q gi|254780869|r 234 SSSVSRIRSIIDIAEQIGRKIVLLGS--SLKRVVSVAIDV-GIIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALA 310 (559) Q Consensus 234 asni~Ri~~i~~~a~~~~R~v~i~Gr--s~~~~~~~a~~~-g~l~~~~~~i~~~~~~~~p~~~~~ii~TGsqge~~a~l~ 310 (559) +..+.+..+.+.-+.+.+++|++.|. |-..--..+.++ +.+.... ..+| .+.+ + ...+.+. T Consensus 24 ~~~i~~aa~~i~~~~~~~~kI~~~GnGgSa~~A~h~a~~l~~~~~~~r--------~~l~---ai~l--~---~~~~~~t 87 (196) T 2yva_A 24 PDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETER--------PSLP---AIAL--N---TDNVVLT 87 (196) T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCC--------CCCC---EEES--S---CCHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCC--------CCEE---EEEC--C---CCCHHHC T ss_conf 999999999999999879989999886728899999999866100256--------6704---8972--6---7703202 Q ss_pred HHCCCCC-CCC-------CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 5202777-653-------02689669999615886177899999765103113430 Q gi|254780869|r 311 QLSRGEM-RNV-------KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA 358 (559) Q Consensus 311 ria~~~~-~~i-------~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~ 358 (559) -++++.. ..+ ..++||.+|.-|.- ||.+.+-..+..-.++|.+++. T Consensus 88 a~~nD~~~~~~f~~ql~~~~~~gDvli~iS~S--Gns~nvi~a~~~Ak~~g~~~i~ 141 (196) T 2yva_A 88 AIANDRLHDEVYAKQVRALGHAGDVLLAISTR--GNSRDIVKAVEAAVTRDMTIVA 141 (196) T ss_dssp HHTTSTTGGGHHHHHHHHHCCTTCEEEEECSS--SCCHHHHHHHHHHHHTTCEEEE T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC--CCCCCHHHHHHHHHHCCCEEEE T ss_conf 22373368899999999735789779998489--9974399999999986998999 No 90 >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* Probab=72.21 E-value=4.1 Score=18.33 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=52.5 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC Q ss_conf 89889986----087882999963564578887777879999999998627983--999941477899999999998718 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559) .|++.+.+ +-+.||+.+++-+|.+ ++.+.|..+-..-++.+.+..+++ +++.+.+.+..-....++.|++.| T Consensus 30 iD~~~~~~~i~~l~~~Gv~Gl~~~G~tG--E~~~Ls~eEr~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G 107 (301) T 1xky_A 30 IDFAKTTKLVNYLIDNGTTAIVVGGTTG--ESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVG 107 (301) T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTT--TGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEECC--HHHHCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCC T ss_conf 4999999999999976999899786522--06558999999999999986046787688727366999999999999759 Q ss_pred CEEEE Q ss_conf 86998 Q gi|254780869|r 252 RKIVL 256 (559) Q Consensus 252 R~v~i 256 (559) =.-++ T Consensus 108 ad~i~ 112 (301) T 1xky_A 108 VDAVM 112 (301) T ss_dssp CSEEE T ss_pred CCEEE T ss_conf 99999 No 91 >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthesis, lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A Probab=72.13 E-value=4.1 Score=18.31 Aligned_cols=77 Identities=17% Similarity=0.108 Sum_probs=51.9 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHHHC Q ss_conf 89889986----08788299996356457888777787999999999862798--3999941477899999999998718 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG--CVLVTTFSSSVSRIRSIIDIAEQIG 251 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g--rViv~~fasni~Ri~~i~~~a~~~~ 251 (559) .|+..+.+ +-+.||+-+.+-+|.+ ++.+.|..+-.+-++.+.+..++ .+++.+.+.+.....+..+.|++.| T Consensus 19 iD~~~l~~~i~~~~~~Gv~Gi~~~GttG--E~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G 96 (292) T 2ojp_A 19 VCRASLKKLIDYHVASGTSAIVSVGTTG--ESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSG 96 (292) T ss_dssp BCHHHHHHHHHHHHHHTCCEEEESSTTT--TGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSS T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEECC--HHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCC T ss_conf 7999999999999976999899684410--16558999999999997765189525998558898999999988898739 Q ss_pred CEEEE Q ss_conf 86998 Q gi|254780869|r 252 RKIVL 256 (559) Q Consensus 252 R~v~i 256 (559) -.-++ T Consensus 97 ad~v~ 101 (292) T 2ojp_A 97 IVGCL 101 (292) T ss_dssp CSEEE T ss_pred CCCEE T ss_conf 96459 No 92 >1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1 Probab=71.79 E-value=4.1 Score=18.26 Aligned_cols=167 Identities=13% Similarity=0.121 Sum_probs=72.2 Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHH-HHHHHH-----CCEEEE-ECHH--H--HHHH-HHHH--HCC Q ss_conf 77787999999999862798399994147789999999-999871-----886998-4486--9--9999-9887--428 Q gi|254780869|r 207 CISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSII-DIAEQI-----GRKIVL-LGSS--L--KRVV-SVAI--DVG 272 (559) Q Consensus 207 ~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~-~~a~~~-----~R~v~i-~Grs--~--~~~~-~~a~--~~g 272 (559) .||-.++.+.++++.++.. .|++-+.||.+.-..+-+ .+|+.. +++|.+ ..++ + .-.+ .+++ +.| T Consensus 64 ~ps~~~~~~~~~~l~~~g~-~ii~i~iSs~lSgty~~a~~a~~~~~~~~~~~~I~viDS~~~s~~~g~lv~~a~~~~~~G 142 (289) T 1pzx_A 64 QPSPLAMKELFLPYAKENR-PCLYIAFSSKLSGTYQTAMAVRSELLDEYPEFRLTIIDSKCASLGQGLAVMKAVELAKQN 142 (289) T ss_dssp CCCHHHHHHHHHHHHHTTC-CEEEEECCTTTCSHHHHHHHHHHHHHHHSTTCCEEEEECCCCHHHHHHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHHHCCCC-EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC T ss_conf 8999999999999851898-499998664051799999999998774479974999928970288999999999999849 Q ss_pred CCCCCCCCCCHHHHCCCCCCCEEEEEECCC------CCHHHHHHHHCC--CCCCCCCCCCCCEEEEEEECCCCHHHHHHH Q ss_conf 767765422656622388020899996696------326889885202--777653026896699996158861778999 Q gi|254780869|r 273 IIKKDQLFLSDESFGLYPREQLIVIATGSQ------GEPRSALAQLSR--GEMRNVKLAEKDTVIFSSRAIPGNEVAIGH 344 (559) Q Consensus 273 ~l~~~~~~i~~~~~~~~p~~~~~ii~TGsq------ge~~a~l~ria~--~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~ 344 (559) . +.+.. .+.+..+.++-.+.++-.+- |+.-.+-..+++ +-.+.+.++.|-...+ .-.-|..+++.+ T Consensus 143 ~-s~~ei---~~~l~~~~~~~~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIi~~~~G~i~~~--~k~R~~kka~~~ 216 (289) T 1pzx_A 143 T-PYNLL---CETIESYCRHMEHIFTVDNLDYLARGGRISKTAAAFGGLLNIKPLLHVEDGALIPL--EKWRGRKKVLKR 216 (289) T ss_dssp C-CHHHH---HHHHHHHHHTEEEEEECSCHHHHHHHTSCC----------CEEEEEEEETTEEEEE--EEEESHHHHHHH T ss_pred C-CHHHH---HHHHHHHHHCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHCEEEEEEEECCEEEEE--EEEECHHHHHHH T ss_conf 9-99999---99999998367599997987999877983688999985008079999729959997--665009999999 Q ss_pred HHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHCC Q ss_conf 9976510311343035666413157889789999997549 Q gi|254780869|r 345 IKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIR 384 (559) Q Consensus 345 ~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~ik 384 (559) +.+.+.+..... ....+..+--.+.++.+++.+.++ T Consensus 217 l~~~~~~~~~~~----~~~~i~i~~~~~~e~~~~l~~~l~ 252 (289) T 1pzx_A 217 MVELMGERGDDL----QKQTIGISHADDEETALELKQMIE 252 (289) T ss_dssp HHHHHHHHCSSG----GGSEEEEEESSCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCC----CCCEEEEECCCCHHHHHHHHHHHH T ss_conf 999999862478----972899992899999999999998 No 93 >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefaciens STR. C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} Probab=70.76 E-value=4.4 Score=18.11 Aligned_cols=70 Identities=10% Similarity=0.078 Sum_probs=48.5 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHCCEEEEE Q ss_conf 087882999963564578887777879999999998627983--999941477899999999998718869984 Q gi|254780869|r 186 IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIGRKIVLL 257 (559) Q Consensus 186 ~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~R~v~i~ 257 (559) +-+.|++.++.-+|.+ +..+.|..+-.+-++.+.+..+|| |++.+.+.+..-.....+.|++.|-..++. T Consensus 64 li~~Gv~Gi~v~GstG--E~~~Lt~~Er~~l~~~~~~~~~gr~pvi~gv~~~s~~~ai~~ak~a~~~Gad~v~v 135 (332) T 2r8w_A 64 LDAAEVDSVGILGSTG--IYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLL 135 (332) T ss_dssp HHHHTCSEEEESSTTT--TGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEE T ss_pred HHHCCCCEEEECEECC--CHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 9977999999782143--44248999999999999998389972999468677899999998886569986996 No 94 >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* Probab=68.15 E-value=4.9 Score=17.73 Aligned_cols=75 Identities=12% Similarity=0.181 Sum_probs=46.9 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCE Q ss_conf 89889986----08788299996356457888777787999999999862798399994147789999999999871886 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRK 253 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~ 253 (559) .|+..+.+ +-+.||+.+++-+|.++. .+.|..+-.+-++...+ ..+.+++.+.+.+..-..+..+.|++.|-. T Consensus 17 iD~~~~~~~i~~l~~~Gv~gi~i~GttGE~--~~Ls~~Er~~~~~~~~~-~~~~~i~~v~~~s~~~~i~~a~~a~~~Gad 93 (293) T 1w3i_A 17 IDKEKLKIHAENLIRKGIDKLFVNGTTGLG--PSLSPEEKLENLKAVYD-VTNKIIFQVGGLNLDDAIRLAKLSKDFDIV 93 (293) T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTG--GGSCHHHHHHHHHHHHT-TCSCEEEECCCSCHHHHHHHHHHGGGSCCS T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCHHHHH--HHCCHHHHHHHHHHHHH-HCCCEEEECCCCCHHHHHHHHHHHHHCCCC T ss_conf 699999999999998699989978345646--65889999999999875-354135412556678778887777744965 Q ss_pred EE Q ss_conf 99 Q gi|254780869|r 254 IV 255 (559) Q Consensus 254 v~ 255 (559) -+ T Consensus 94 ~~ 95 (293) T 1w3i_A 94 GI 95 (293) T ss_dssp EE T ss_pred EE T ss_conf 55 No 95 >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* Probab=67.77 E-value=5 Score=17.68 Aligned_cols=60 Identities=10% Similarity=0.133 Sum_probs=30.5 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHH-HHHCCEEEEECHHHHHHHHHHHHCCC Q ss_conf 87999999999862798399994147789999999999-87188699844869999998874287 Q gi|254780869|r 210 EKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIA-EQIGRKIVLLGSSLKRVVSVAIDVGI 273 (559) Q Consensus 210 E~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a-~~~~R~v~i~Grs~~~~~~~a~~~g~ 273 (559) -.++++.+.+.+ +.+. ++..+.+ -.=++-++++. .+-|..|.+-.-++...+.++...|. T Consensus 40 v~~fE~~~a~~~-g~~~-av~~~SG--T~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~i~~~g~ 100 (388) T 1b9h_A 40 VNSFEREFAAHH-GAAH-ALAVTNG--THALELALQVMGVGPGTEVIVPAFTFISSSQAAQRLGA 100 (388) T ss_dssp HHHHHHHHHHHT-TCSE-EEEESCH--HHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTC T ss_pred HHHHHHHHHHHH-CCCE-EEEECCH--HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCC T ss_conf 999999999997-8794-9996787--99999999985999849999789743777799998499 No 96 >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, cytoplasm, schiff base, carbohydrate metabolism; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 1hl2_A 1fdy_A 1fdz_A 1nal_1 Probab=67.08 E-value=5.1 Score=17.59 Aligned_cols=77 Identities=21% Similarity=0.159 Sum_probs=51.0 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHC Q ss_conf 89889986----087882999963564578887777879999999998627983--999941477899999999998718 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIG 251 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~ 251 (559) .|++.+.+ +-+.|++.+++-+|.+ ++.+.|..+-..-++.+.+..++| +++.+.+.+..-....++.|++.| T Consensus 29 iD~~~~~~~i~~~i~~Gv~gi~v~G~tG--E~~~Ls~eEr~~li~~~~~~~~~~~~vi~g~~~~~~~~ai~~a~~A~~~G 106 (303) T 2wkj_A 29 LDKASLRRLVQFNIQQGIDGLYVGGSTG--EAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYG 106 (303) T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTT--TGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEECC--CHHHCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCC T ss_conf 4999999999999986999899776754--23348999999999999997179987899747788999999999999839 Q ss_pred CEEEE Q ss_conf 86998 Q gi|254780869|r 252 RKIVL 256 (559) Q Consensus 252 R~v~i 256 (559) -.-++ T Consensus 107 ad~i~ 111 (303) T 2wkj_A 107 FDAVS 111 (303) T ss_dssp CSEEE T ss_pred CCEEE T ss_conf 99886 No 97 >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} Probab=66.30 E-value=5.3 Score=17.48 Aligned_cols=76 Identities=17% Similarity=0.164 Sum_probs=51.4 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCE Q ss_conf 89889986----08788299996356457888777787999999999862798399994147789999999999871886 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRK 253 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~ 253 (559) .|+..+.+ +.+.||+.++.-+|.++. .+.|..+-.+-++.+++ .+-.|++.+-+.+........+.|++.|=. T Consensus 44 ID~~~~~~~i~~l~~~Gv~Gi~v~GstGE~--~~Ls~eEr~~l~~~~v~-~rvpvi~Gv~~~st~eai~~a~~a~~~Gad 120 (344) T 2hmc_A 44 PDFDALVRKGKELIADGMSAVVYCGSMGDW--PLLTDEQRMEGVERLVK-AGIPVIVGTGAVNTASAVAHAVHAQKVGAK 120 (344) T ss_dssp BCHHHHHHHHHHHHHTTCCCEEESSGGGTG--GGSCHHHHHHHHHHHHH-TTCCEEEECCCSSHHHHHHHHHHHHHHTCS T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEECCCH--HHCCHHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHHCCCC T ss_conf 299999999999997799999977543205--45899999999999973-388689967878899999999999983997 Q ss_pred EEE Q ss_conf 998 Q gi|254780869|r 254 IVL 256 (559) Q Consensus 254 v~i 256 (559) -++ T Consensus 121 ~vl 123 (344) T 2hmc_A 121 GLM 123 (344) T ss_dssp EEE T ss_pred EEE T ss_conf 454 No 98 >2a9v_A GMP synthase; NP_394403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 Probab=64.72 E-value=3.9 Score=18.48 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=47.1 Q ss_pred CCEEEEEECCCCCCCC-----CCCCEEE-ECCCHHHHHHHHHCCCEEEEECCCCCCCCCH---HHHHH---HCCCCEECC Q ss_conf 8648999776767888-----7675028-7079579876641246899605430121607---88898---629977929 Q gi|254780869|r 31 SRKWIMIDCGVSFPKD-----DLPGVDL-VFPDITFIMKERKNLMAIFITHAHEDHYGAL---HDLWS---FLHVPVYAS 98 (559) Q Consensus 31 ~~~~iiiD~G~~fp~~-----~~~gid~-iiPd~~~l~~~~~~i~~i~iTH~H~DHiGal---p~l~~---~~~~pIY~s 98 (559) --.+++||+|..|..+ ...|++. |+|. +...+..++.+||+|+=+..+..-.. ..+.+ +.+.||.+- T Consensus 13 m~~i~iiD~g~~~~~~i~r~L~~lG~~~~vv~~-~~~~~~l~~~dgiIl~GG~~~~~~~~~~~~~l~~~~~~~~~PiLGI 91 (212) T 2a9v_A 13 MLKIYVVDNGGQWTHREWRVLRELGVDTKIVPN-DIDSSELDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGI 91 (212) T ss_dssp CCBEEEEEESCCTTCHHHHHHHHTTCBCCEEET-TSCGGGGTTCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEEEE T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 667999999876899999999978983899969-7999998369919997999843434378999999998579989987 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999999 Q gi|254780869|r 99 PFAIGLLEAKR 109 (559) Q Consensus 99 ~~t~~li~~~~ 109 (559) =+...+|-..+ T Consensus 92 ClG~QlL~~~~ 102 (212) T 2a9v_A 92 CVGAQFIALHF 102 (212) T ss_dssp THHHHHHHHHT T ss_pred HHHHHHHHHHC T ss_conf 59889999871 No 99 >2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A Probab=64.22 E-value=5.8 Score=17.21 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=8.0 Q ss_pred HHHHHCCCEEEEECCC Q ss_conf 7664124689960543 Q gi|254780869|r 62 MKERKNLMAIFITHAH 77 (559) Q Consensus 62 ~~~~~~i~~i~iTH~H 77 (559) ++..++.+|++||||- T Consensus 96 ~~~~~~~dGvVVtHGT 111 (358) T 2him_A 96 KAHYDDYDGFVILHGT 111 (358) T ss_dssp HHHGGGCSEEEEECCS T ss_pred HHHHCCCCCEEEECCC T ss_conf 9852369978997586 No 100 >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino- acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; 1.45A {Staphylococcus aureus} PDB: 3di1_A 3di0_A Probab=64.11 E-value=5.8 Score=17.20 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=53.8 Q ss_pred CCHHHHH----HCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHHHC Q ss_conf 8988998----608788299996356457888777787999999999862798--3999941477899999999998718 Q gi|254780869|r 178 TDKDSLC----AIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG--CVLVTTFSSSVSRIRSIIDIAEQIG 251 (559) Q Consensus 178 ~d~~~l~----~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g--rViv~~fasni~Ri~~i~~~a~~~~ 251 (559) .|+..+. .+-++||+.++.-+|.+ ++.+.|..+-.+-++.+.+...+ .|++.+.+.+........+.|++.| T Consensus 20 iD~~~~~~~i~~l~~~Gv~gl~~~GttG--E~~~Ls~~Er~~l~~~~~e~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~G 97 (292) T 3daq_A 20 VNLEALKAHVNFLLENNAQAIIVNGTTA--ESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALG 97 (292) T ss_dssp ECHHHHHHHHHHHHHTTCCEEEESSGGG--TGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCHHH--HHHHCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHCC T ss_conf 8999999999999977999999780144--46668999999999988885135686673367888999999999999659 Q ss_pred CEEEEE Q ss_conf 869984 Q gi|254780869|r 252 RKIVLL 257 (559) Q Consensus 252 R~v~i~ 257 (559) =.-++. T Consensus 98 ad~v~v 103 (292) T 3daq_A 98 ADAIML 103 (292) T ss_dssp CSEEEE T ss_pred CCEEEE T ss_conf 998999 No 101 >2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A* Probab=63.96 E-value=5.9 Score=17.18 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=19.8 Q ss_pred CCCCCHHHHHHHHHHCC---C---CEEEEECC------CHHHHHHHHHHHHH Q ss_conf 57889789999997549---5---39997045------77999999987874 Q gi|254780869|r 368 SGHPYPNDLKRMYQWIR---P---QVLVAIHG------EPLHLVAHKELALQ 407 (559) Q Consensus 368 SGHa~~edl~~li~~ik---P---k~~IPvHG------e~rhl~~h~~la~~ 407 (559) |=.++.+-++..++.++ + +..|-|-| ..+ -..|.++... T Consensus 324 sya~nP~s~~~aL~~l~~~~~~~~gr~I~VlG~m~e~G~~~-~~~h~~i~~~ 374 (454) T 2am1_A 324 VYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQS-VQLHNQMILS 374 (454) T ss_dssp CSCCSHHHHHHHHHHHTTSCCCSSCEEEEEEECCCCCCTTH-HHHHHHGGGG T ss_pred ECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHCCCHH-HHHHHHHHHH T ss_conf 23699999999999998633203786699978620015358-9999999999 No 102 >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A Probab=63.38 E-value=6 Score=17.11 Aligned_cols=94 Identities=17% Similarity=0.108 Sum_probs=58.2 Q ss_pred ECCCCEECCCCCCCC-CCCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECH Q ss_conf 833402467766542-389889986----087882999963564578887777879999999998627983--9999414 Q gi|254780869|r 162 HTGDWKLDDDAILGD-VTDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFS 234 (559) Q Consensus 162 ytGDfk~d~~p~~g~-~~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fa 234 (559) |.|=|-.=.+|..-. ..|+..+.+ +-+.||+.++.-+|. .++.+.|..+-.+-++.+.+..++| |++.+.+ T Consensus 32 f~Gv~~a~~TPf~~dg~ID~~~l~~~i~~l~~~Gv~Gi~v~Gst--GE~~~Ls~eEr~~l~~~~~~~~~~r~pvi~gv~~ 109 (343) T 2v9d_A 32 FTGIIPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSG--GEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGG 109 (343) T ss_dssp SCEECCEECCCBCTTSSBCHHHHHHHHHHHHHTTCSCEEESSTT--TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCS T ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECEEH--HHHHHCCHHHHHHHHHHHHHHCCCCCCEEEECCC T ss_conf 66440567776896849599999999999998599989977557--7467672999999999999973898827985487 Q ss_pred HHHHHHHHHHHHHHHHCCEEEEE Q ss_conf 77899999999998718869984 Q gi|254780869|r 235 SSVSRIRSIIDIAEQIGRKIVLL 257 (559) Q Consensus 235 sni~Ri~~i~~~a~~~~R~v~i~ 257 (559) .+.......++.|++.|-.-++. T Consensus 110 ~st~~~~~~a~~a~~~G~dav~v 132 (343) T 2v9d_A 110 TNARETIELSQHAQQAGADGIVV 132 (343) T ss_dssp SCHHHHHHHHHHHHHHTCSEEEE T ss_pred CCHHHHHHHHHHHHHCCCCEEEE T ss_conf 88999999999998538985884 No 103 >3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protein structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} Probab=61.12 E-value=6.6 Score=16.83 Aligned_cols=168 Identities=12% Similarity=0.115 Sum_probs=76.3 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHH-HHHHHHHHH-CCEEEEEC-HH----HHHHHHHHH---HCCCCC Q ss_conf 777787999999999862798399994147789999-999999871-88699844-86----999999887---428767 Q gi|254780869|r 206 TCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIR-SIIDIAEQI-GRKIVLLG-SS----LKRVVSVAI---DVGIIK 275 (559) Q Consensus 206 ~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~-~i~~~a~~~-~R~v~i~G-rs----~~~~~~~a~---~~g~l~ 275 (559) ..||-.++.+.++++.++.--.|++-+.+|.+.-.. .+..++++. +++|.+.. ++ +.-.+.-|. +.|+ . T Consensus 65 S~ps~~~~~~~~~~l~~~gyd~ii~i~iSs~lSgty~~a~~~~~~~~~~~I~ViDS~~~s~~~~~~v~~a~~~~~~G~-s 143 (285) T 3lup_A 65 SQPSLAELDDLLCQLEKEGYTHVLGLFIAAGISGFWQNIQFLIEEHPNLTIAFPDTKITSAPQGNLVRNALMCSREGM-D 143 (285) T ss_dssp CCCCHHHHHHHHHHHHHTTCCEEEECCSCGGGCTHHHHHTTHHHHCTTSEEECCCCCCCHHHHHHHHHHHHHHHTTTC-C T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC-C T ss_conf 799989999999999976998799995451676899999999986899809998188611768999999999998499-9 Q ss_pred CCCCCCCHHHHCCCCCCCEEEEEECCC------CCHHHHHHHHCC--CCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHH Q ss_conf 765422656622388020899996696------326889885202--777653026896699996158861778999997 Q gi|254780869|r 276 KDQLFLSDESFGLYPREQLIVIATGSQ------GEPRSALAQLSR--GEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKN 347 (559) Q Consensus 276 ~~~~~i~~~~~~~~p~~~~~ii~TGsq------ge~~a~l~ria~--~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n 347 (559) .... .+.+..+.++-.+.++..+- |+.-.+.+.+++ +-.+-+++.+...+.. ..-.-|..+++.++.+ T Consensus 144 ~eei---~~~l~~~~~~~~~~~~v~~L~~L~kgGRis~~~a~ig~lL~ikPIl~~~~~G~l~~-~~k~Rg~kka~~~l~~ 219 (285) T 3lup_A 144 FDVI---VNKIQSQIEKIEGFIVVNDLNHLVKGGRLSNGSAIIGNLLSIKPVLHFNEEGKIVV-YEKVRTEKKALKRLAE 219 (285) T ss_dssp HHHH---HHHHHHHHTTCEEEEECSCTHHHHHHTCBTTHHHHHHHHTTSCCEEEECTTSCEEE-EECCSSHHHHHHHHHH T ss_pred HHHH---HHHHHHHHHHCEEEEEECCHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCEEE-EEEECCHHHHHHHHHH T ss_conf 8999---99999998515799994978999868987606889985008779999988997887-5300458789999999 Q ss_pred HHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHHC Q ss_conf 651031134303566641315788978999999754 Q gi|254780869|r 348 RLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWI 383 (559) Q Consensus 348 ~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~i 383 (559) .+.+...+ ....+..+-..+.++..++.+.+ T Consensus 220 ~i~~~~~~-----~~~~i~i~~~~~~e~a~~l~~~l 250 (285) T 3lup_A 220 IVKEMTAD-----GEYDIAIIHSRAQDKAEQLYNLL 250 (285) T ss_dssp HHHHHGGG-----SCEEEEEEESSCHHHHHHHHHHH T ss_pred HHHHHHCC-----CCCEEEEEECCCHHHHHHHHHHH T ss_conf 99986169-----98169999899999999999999 No 104 >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* Probab=59.85 E-value=6.9 Score=16.68 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=52.4 Q ss_pred CCHHHHHH-----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHH Q ss_conf 89889986-----087882999963564578887777879999999998627983--99994147789999999999871 Q gi|254780869|r 178 TDKDSLCA-----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQI 250 (559) Q Consensus 178 ~d~~~l~~-----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~ 250 (559) .|+..+.+ +.+.||+.+++-+|.+ ++.+.|..+-.+-++.+.+..+++ |++.+.+.+..-..++.+.|++. T Consensus 21 iD~~~~~~~i~~~i~~~Gv~gi~~~GstG--E~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~la~~a~~~ 98 (293) T 1f6k_A 21 INEKGLRQIIRHNIDKMKVDGLYVGGSTG--ENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATEL 98 (293) T ss_dssp BCHHHHHHHHHHHHHTSCCSEEEESSGGG--TGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCC--CHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHC T ss_conf 39999999999999827999899792163--0544889999989988776327884299835767799999999999975 Q ss_pred CCEEEE Q ss_conf 886998 Q gi|254780869|r 251 GRKIVL 256 (559) Q Consensus 251 ~R~v~i 256 (559) |-.-++ T Consensus 99 Gad~v~ 104 (293) T 1f6k_A 99 GYDCLS 104 (293) T ss_dssp TCSEEE T ss_pred CCCEEE T ss_conf 999777 No 105 >2pcq_A Putative dihidrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, structural genomics, NPPSFA; 2.10A {Thermus thermophilus HB8} Probab=59.64 E-value=4.1 Score=18.26 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=41.4 Q ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHHHCCEEEE Q ss_conf 788299996356457888777787999999999862798--399994147789999999999871886998 Q gi|254780869|r 188 NEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG--CVLVTTFSSSVSRIRSIIDIAEQIGRKIVL 256 (559) Q Consensus 188 ~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g--rViv~~fasni~Ri~~i~~~a~~~~R~v~i 256 (559) +.|++.+++-+|.++ +.+.|..+-.+ +++...+ .+++.+.+.+.......++.|++.|=.-++ T Consensus 29 ~~gv~gi~~~GstGE--~~~Ls~~Er~~----v~~~v~~~~pvi~gv~~~s~~~~i~~a~~a~~~G~d~v~ 93 (283) T 2pcq_A 29 EPLVDGLLVYGSNGE--GVHLTPEERAR----GLRALRPRKPFLVGLMEETLPQAEGALLEAKAAGAMALL 93 (283) T ss_dssp GGGSSCCEETCTTTT--GGGSCHHHHHH----HHHTCCCSSCCEEEECCSSHHHHHHHHHHHHHHTCSEEE T ss_pred HCCCCEEEECEECHH--HHHCCHHHHHH----HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEE T ss_conf 808998997820400--66589999999----998764139879996787568899998888864998799 No 106 >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} Probab=59.36 E-value=7 Score=16.63 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=52.4 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHCC Q ss_conf 89889986----08788299996356457888777787999999999862798-39999414778999999999987188 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKG-CVLVTTFSSSVSRIRSIIDIAEQIGR 252 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~g-rViv~~fasni~Ri~~i~~~a~~~~R 252 (559) .|+..+.+ +-+.||+.+++-+|.+ ++.+.|..+-.+-++.+.+.+++ .|++.+.+.+..-....++.|++.|= T Consensus 26 iD~~~l~~~i~~li~~Gv~Gi~v~GstG--E~~~Ls~eEr~~l~~~~~~~~~~~~vi~gv~~~st~~ai~la~~a~~~Ga 103 (313) T 3dz1_A 26 IDDVSIDRLTDFYAEVGCEGVTVLGILG--EAPKLDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGA 103 (313) T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESTGGG--TGGGSCHHHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTC T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECC--CHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCC T ss_conf 4999999999999975999899755766--62338999999999999986599768996265104899999999986598 Q ss_pred EEEEE Q ss_conf 69984 Q gi|254780869|r 253 KIVLL 257 (559) Q Consensus 253 ~v~i~ 257 (559) .-++. T Consensus 104 d~i~v 108 (313) T 3dz1_A 104 AGVMI 108 (313) T ss_dssp SEEEE T ss_pred CEEEE T ss_conf 56753 No 107 >3cvj_A Putative phosphoheptose isomerase; NP_244191.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125} Probab=57.76 E-value=7.4 Score=16.44 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=29.3 Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 02689669999615886177899999765103113430 Q gi|254780869|r 321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA 358 (559) Q Consensus 321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~ 358 (559) .++++|.+|.-|.- |+-+.+-.+.....+.|++++. T Consensus 105 ~i~~~DvvI~iS~S--G~t~~vi~a~~~AK~~G~~vIa 140 (243) T 3cvj_A 105 QVTNKDVIMIISNS--GRNTVPVEMAIESRNIGAKVIA 140 (243) T ss_dssp TCCTTCEEEEECSS--CCSHHHHHHHHHHHHHTCEEEE T ss_pred CCCCCCEEEEECCC--CCCHHHHHHHHHHHHCCCEEEE T ss_conf 79999999997789--9999999999999987994999 No 108 >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis W83} Probab=57.01 E-value=7.6 Score=16.36 Aligned_cols=45 Identities=9% Similarity=0.220 Sum_probs=26.8 Q ss_pred HHHHHHHHHHHCCCCEEEEECHHH-------HHHHHHHHHHHHHHCCEEEEE Q ss_conf 999999998627983999941477-------899999999998718869984 Q gi|254780869|r 213 IKKNIYDIMKNAKGCVLVTTFSSS-------VSRIRSIIDIAEQIGRKIVLL 257 (559) Q Consensus 213 v~~~i~~~~~~~~grViv~~fasn-------i~Ri~~i~~~a~~~~R~v~i~ 257 (559) +.+.+++.....+-+.++-|..+| .+++++|+++|++.+-.|+.+ T Consensus 170 l~~~~~~~~~~~~~~~ivl~~P~NPTG~~~s~e~~~~i~~~a~~~~~~vi~D 221 (437) T 3g0t_A 170 LREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIED 221 (437) T ss_dssp HHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEC T ss_conf 2799999853799459995899899877531268999988752587689855 No 109 >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} Probab=55.83 E-value=8 Score=16.22 Aligned_cols=65 Identities=9% Similarity=0.095 Sum_probs=44.5 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECHHHHHHHHHHHHHHHHHCC Q ss_conf 087882999963564578887777879999999998627983--9999414778999999999987188 Q gi|254780869|r 186 IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC--VLVTTFSSSVSRIRSIIDIAEQIGR 252 (559) Q Consensus 186 ~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr--Viv~~fasni~Ri~~i~~~a~~~~R 252 (559) +-+.||+.++.-+|.+ ++.+.|..+-.+-++.+.+..+|| +++.+.+.+........+.|.+.+- T Consensus 37 l~~~Gv~gi~v~GstG--E~~~Ls~eEr~~l~~~~~~~~~~~~pvi~g~~~~~~~~~~~la~~a~~~g~ 103 (311) T 3h5d_A 37 LLAHHTDGILLAGTTA--ESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGG 103 (311) T ss_dssp HHHTTCCCEEESSTTT--TGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCC T ss_pred HHHCCCCEEEECEEHH--HHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHC T ss_conf 9986999899686235--066589999999999999984588868985576202555899999988633 No 110 >3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein structure initiative; HET: PG6; 2.00A {Ruminococcus gnavus atcc 29149} Probab=50.94 E-value=9.4 Score=15.69 Aligned_cols=157 Identities=11% Similarity=0.108 Sum_probs=63.3 Q ss_pred HHHHHHHCCCCEEEEECHHHHHH-HHHHHHHHHHH-----CCEEEEEC-HH----HHHHHHHHHH---CCCCCCCCCCCC Q ss_conf 99998627983999941477899-99999999871-----88699844-86----9999998874---287677654226 Q gi|254780869|r 217 IYDIMKNAKGCVLVTTFSSSVSR-IRSIIDIAEQI-----GRKIVLLG-SS----LKRVVSVAID---VGIIKKDQLFLS 282 (559) Q Consensus 217 i~~~~~~~~grViv~~fasni~R-i~~i~~~a~~~-----~R~v~i~G-rs----~~~~~~~a~~---~g~l~~~~~~i~ 282 (559) +.+.++..--.|++-+.||.+.- .++...+++.. +++|.+.. ++ +.-.+.-|.+ .|. +.+... T Consensus 88 ~~e~~~~~~d~vi~i~iSs~lSgty~~a~~a~~~~~~e~~~~~I~ViDS~~~s~~~g~lv~~A~~l~~~G~-s~eeI~-- 164 (298) T 3jr7_A 88 YMESYHCDAERIYVVTLSAELSGSYNSAVLGKNLYEEEYGEKQIHVFNSRSASVGETLIALKVQQCEKAGM-TFEEVV-- 164 (298) T ss_dssp HHHHHCSSCSEEEEEESCTTTCSHHHHHHHHHHHHHHHHCCCEEEEEECSSCTHHHHHHHHHHHHHHHTTC-CHHHHH-- T ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC-CHHHHH-- T ss_conf 99999846895799965740202799999999998876699839998488641768999999999998599-999999-- Q ss_pred HHHHCCCC-CCCEEEEEECCCCCHHHHHHHHCC---------CCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCC Q ss_conf 56622388-020899996696326889885202---------77765302689669999615886177899999765103 Q gi|254780869|r 283 DESFGLYP-REQLIVIATGSQGEPRSALAQLSR---------GEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQ 352 (559) Q Consensus 283 ~~~~~~~p-~~~~~ii~TGsqge~~a~l~ria~---------~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~ 352 (559) +.+..+. +....+ +-.+- +.+.+-.|++. +-.+-|++.+...+....+ ..|.++++.++.+.+.+. T Consensus 165 -~~l~~~~~~~~~~f-~v~~L-~~L~kgGRIs~~~~~ig~lL~ikPIi~~~~~G~i~~~~k-~Rg~kkai~~l~~~i~~~ 240 (298) T 3jr7_A 165 -ESVECYIEEQHTYF-VLENL-DTLRKNGRLTGIKSLVAGALNIKPIMGSTPQGTICQKEK-ARGMKKALVKMADCVAAD 240 (298) T ss_dssp -HHHHHHHHHCCEEE-ECSCC-HHHHHTTCSTTCCC--CCCTTEEEEEEECTTSCEEEEEE-EESHHHHHHHHHHHHHHH T ss_pred -HHHHHHHHHCEEEE-EECCH-HHHHHCCCCCHHHHHHHHHHCCEEEEEECCCCCEEHHHH-HHHHHHHHHHHHHHHHHH T ss_conf -99999986247999-96987-999877986067999987537569999867996741655-652999999999999987 Q ss_pred CEEEEECCCCCCEECCCCCCHHHHHHHHHHCC Q ss_conf 11343035666413157889789999997549 Q gi|254780869|r 353 GVRVIAEDAECPVHVSGHPYPNDLKRMYQWIR 384 (559) Q Consensus 353 g~~vi~~~~~~~iH~SGHa~~edl~~li~~ik 384 (559) ..+ .....++++.-.+.++.+++.+.++ T Consensus 241 ~~~----~~~~~v~i~~~~~~e~a~~l~~~l~ 268 (298) T 3jr7_A 241 VVN----AGDKILAIAHCNCEERAKEVQRLLK 268 (298) T ss_dssp CCS----GGGCEEEEEESSCHHHHHHHHHHHH T ss_pred HCC----CCCEEEEEEECCCHHHHHHHHHHHH T ss_conf 325----7981899996989999999999998 No 111 >1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A Probab=49.93 E-value=9.8 Score=15.59 Aligned_cols=43 Identities=7% Similarity=0.285 Sum_probs=31.7 Q ss_pred HHHHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEE Q ss_conf 9999998627-983999941-477899999999998718869984 Q gi|254780869|r 215 KNIYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLL 257 (559) Q Consensus 215 ~~i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~ 257 (559) +++.++++.+ ++.--|++| ..|++-++.++++|++.+.+|.+. T Consensus 15 ~nlk~il~~A~~~~yAV~AfNv~n~e~~~Avi~AAee~~sPvIlq 59 (358) T 1dos_A 15 DDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQ 59 (358) T ss_dssp HHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHHTCCEEEE T ss_pred HHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEE T ss_conf 999999999998796799987798999999999999978898998 No 112 >2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens} Probab=48.56 E-value=10 Score=15.44 Aligned_cols=40 Identities=15% Similarity=-0.011 Sum_probs=27.3 Q ss_pred CCEEEEECCCCCCCCCHHHH--HHHCCCCEECCHHHHHHHHH Q ss_conf 46899605430121607888--98629977929999999999 Q gi|254780869|r 68 LMAIFITHAHEDHYGALHDL--WSFLHVPVYASPFAIGLLEA 107 (559) Q Consensus 68 i~~i~iTH~H~DHiGalp~l--~~~~~~pIY~s~~t~~li~~ 107 (559) -+|||||=.-.|--..++.. +.++++.||+|+.|+..++. T Consensus 24 ~kgvliSv~d~dK~~~~~~a~~L~~lGf~i~AT~GTa~~L~~ 65 (143) T 2yvq_A 24 QKGILIGIQQSFRPRFLGVAEQLHNEGFKLFATEATSDWLNA 65 (143) T ss_dssp CSEEEEECCGGGHHHHHHHHHHHHTTTCEEEEEHHHHHHHHH T ss_pred CCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH T ss_conf 988899986763778999999999749678973589999997 No 113 >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} Probab=46.94 E-value=11 Score=15.27 Aligned_cols=67 Identities=21% Similarity=0.160 Sum_probs=32.4 Q ss_pred HHHHH-CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECH Q ss_conf 89986-08788299996356457888777787999999999862798399994147789999999999871886998448 Q gi|254780869|r 181 DSLCA-IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGS 259 (559) Q Consensus 181 ~~l~~-~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Gr 259 (559) ..|++ +.+.|..++..|-..........+.. .+...+.++...++.....+ ++++.|. T Consensus 23 ~~la~~l~~~G~~v~~~d~~g~g~s~~~~~~~--------------------~~~~~v~~~~~~~~~~~~~~-~i~l~G~ 81 (176) T 2qjw_A 23 TALAEVAERLGWTHERPDFTDLDARRDLGQLG--------------------DVRGRLQRLLEIARAATEKG-PVVLAGS 81 (176) T ss_dssp HHHHHHHHHTTCEEECCCCHHHHTCGGGCTTC--------------------CHHHHHHHHHHHHHHHHTTS-CEEEEEE T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC--------------------CHHHHHHHHHHHHHHCCCCC-CEEEEEE T ss_conf 99999999789989993578889999988779--------------------99999999999999648899-8899996 Q ss_pred HHHHHHHHH Q ss_conf 699999988 Q gi|254780869|r 260 SLKRVVSVA 268 (559) Q Consensus 260 s~~~~~~~a 268 (559) ||--.+-.. T Consensus 82 S~Gg~~a~~ 90 (176) T 2qjw_A 82 SLGSYIAAQ 90 (176) T ss_dssp THHHHHHHH T ss_pred CCHHHHHHH T ss_conf 828999999 No 114 >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, , PSI-2, protein structure initiative; 1.80A {Bacillus clausii ksm-k16} Probab=46.68 E-value=11 Score=15.24 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=47.8 Q ss_pred CCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEECHHHHHHHHHHHHHHHHHCC Q ss_conf 89889986----0878829999635645788877778799999999986279839-999414778999999999987188 Q gi|254780869|r 178 TDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCV-LVTTFSSSVSRIRSIIDIAEQIGR 252 (559) Q Consensus 178 ~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grV-iv~~fasni~Ri~~i~~~a~~~~R 252 (559) .|+..+.+ +-+.||+.+++-+|.++ ..+.|..+-.+-++.+.+..++|+ +++.-+.+.....+..+.|++.|= T Consensus 30 ID~~~l~~~i~~l~~~Gv~Gi~~~GstGE--~~~Ls~~Er~~l~~~~~~~~~~~~~vi~g~~~st~~~i~~a~~a~~~Ga 107 (316) T 3e96_A 30 IDWHHYKETVDRIVDNGIDVIVPCGNTSE--FYALSLEEAKEEVRRTVEYVHGRALVVAGIGYATSTAIELGNAAKAAGA 107 (316) T ss_dssp BCHHHHHHHHHHHHTTTCCEECTTSGGGT--GGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHHTC T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEECCC--HHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCC T ss_conf 99999999999999759998996856234--5458999999999999998089842883565448999999989997599 Q ss_pred EEEE Q ss_conf 6998 Q gi|254780869|r 253 KIVL 256 (559) Q Consensus 253 ~v~i 256 (559) .-++ T Consensus 108 d~i~ 111 (316) T 3e96_A 108 DAVM 111 (316) T ss_dssp SEEE T ss_pred CEEE T ss_conf 9998 No 115 >1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative reductase, PSI; 1.28A {Pseudomonas aeruginosa PAO1} SCOP: c.23.5.4 PDB: 1x77_A* Probab=46.52 E-value=11 Score=15.23 Aligned_cols=31 Identities=6% Similarity=0.155 Sum_probs=13.1 Q ss_pred CCCCCCEEEEEEECCCCHHH-HHHHHHHHHHC Q ss_conf 02689669999615886177-89999976510 Q gi|254780869|r 321 KLAEKDTVIFSSRAIPGNEV-AIGHIKNRLVE 351 (559) Q Consensus 321 ~l~~~D~vI~ss~~ipGnE~-~~~~~~n~l~~ 351 (559) ++.+-|.+||+|+.-.|+=. ..-.++||+.+ T Consensus 69 ~i~~AD~~Ii~sPeY~~s~pg~LKn~iD~~~~ 100 (193) T 1rtt_A 69 QIRAADALLFATPEYNYSMAGVLKNAIDWASR 100 (193) T ss_dssp HHHHCSEEEEECCEETTEECHHHHHHHHHHTC T ss_pred HHHCCCEEEEECHHHHHHCCHHHHHHHHHHHC T ss_conf 98638958996178863325999999998643 No 116 >1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3 Probab=45.28 E-value=11 Score=15.10 Aligned_cols=36 Identities=17% Similarity=0.425 Sum_probs=24.3 Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 02689669999615886177899999765103113430 Q gi|254780869|r 321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA 358 (559) Q Consensus 321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~ 358 (559) .++++|.+|+-|.. |+.+.+..+...+.+.|++++. T Consensus 86 ~~~~~DvvI~iS~s--G~t~~~~~~~~~ak~~g~~vI~ 121 (200) T 1vim_A 86 RITDQDVLVGISGS--GETTSVVNISKKAKDIGSKLVA 121 (200) T ss_dssp CCCTTCEEEEECSS--SCCHHHHHHHHHHHHHTCEEEE T ss_pred CCCCCCEEEEECCC--CCCCCHHHHHHHHHHCCCEEEE T ss_conf 38999989985799--7742169999999987996999 No 117 >2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, core fucose, SH3 domain; 2.61A {Homo sapiens} Probab=45.24 E-value=11 Score=15.32 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=6.6 Q ss_pred HHHHHHHCCCCEEEE Q ss_conf 999997549539997 Q gi|254780869|r 376 LKRMYQWIRPQVLVA 390 (559) Q Consensus 376 l~~li~~ikPk~~IP 390 (559) +..|+=+.+=.+||. T Consensus 389 L~Dl~LLS~cD~~Vc 403 (526) T 2de0_X 389 ILDIHFLSQADFLVC 403 (526) T ss_dssp HHHHHHHHHSSEEEE T ss_pred HHHHHHHHHCCEEEE T ss_conf 999999982996999 No 118 >3egl_A DEGV family protein; alpha-beta-alpha sandwich, methylated lysines, structural genomics, PSI-2; HET: MLY MSE PLM; 2.41A {Corynebacterium glutamicum atcc 13032} Probab=44.20 E-value=12 Score=14.98 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=30.4 Q ss_pred CCHHHHHHHHHHHHHHCC-CCEEEEECHHHHHH-HHHHHHHHHHH-CCEEEEEC Q ss_conf 778799999999986279-83999941477899-99999999871-88699844 Q gi|254780869|r 208 ISEKGIKKNIYDIMKNAK-GCVLVTTFSSSVSR-IRSIIDIAEQI-GRKIVLLG 258 (559) Q Consensus 208 ~sE~~v~~~i~~~~~~~~-grViv~~fasni~R-i~~i~~~a~~~-~R~v~i~G 258 (559) +|-.++.+.+.+.+++.. -.|++-+.||.+.- .+++..+|... +++|.+.. T Consensus 45 ~~~~~~~~~~~~~l~~~g~d~ii~i~iSs~LSgty~~a~~aa~~~~~~~I~ViD 98 (277) T 3egl_A 45 LSSLELAASYARQLERGGDDGVLALHISXELSSTWSAAVTAAAVFDDDSVRVVD 98 (277) T ss_dssp CCHHHHHHHHHHHHHHTTTSCEEEECSCTTTCSHHHHHHHHHTTSSTTSEEEEC T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 997999999999998579981899984732748999999998546899699976 No 119 >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Probab=43.34 E-value=12 Score=14.89 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=54.9 Q ss_pred EEEEEC-CCCCHHHHHHHHCCCCCCCCCCCCCCE-EEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCC Q ss_conf 999966-963268898852027776530268966-999961588617789999976510311343035666413157889 Q gi|254780869|r 295 IVIATG-SQGEPRSALAQLSRGEMRNVKLAEKDT-VIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPY 372 (559) Q Consensus 295 ~ii~TG-sqge~~a~l~ria~~~~~~i~l~~~D~-vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~ 372 (559) .+|+|| .+|...+.+.|-. +..|-+ +++.|+--|.....+..+...+...|+++...-++ =++ T Consensus 654 tvLVTGaG~GsIGa~Var~L--------l~~GArvlVltSR~~~~~~~~aq~l~~el~a~Ga~l~Vv~~d-------vas 718 (1878) T 2uv9_A 654 HALMTGAGAGSIGAEVLQGL--------LSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFN-------QGS 718 (1878) T ss_dssp EEEEESCCTTSHHHHHHHHH--------HHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECC-------TTC T ss_pred EEEEECCCCCHHHHHHHHHH--------HHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECC-------CCC T ss_conf 89997998769999999999--------978996899688998565019999999998289879999699-------889 Q ss_pred HHHHHHHHHHCC---------CCEEEEECC Q ss_conf 789999997549---------539997045 Q gi|254780869|r 373 PNDLKRMYQWIR---------PQVLVAIHG 393 (559) Q Consensus 373 ~edl~~li~~ik---------Pk~~IPvHG 393 (559) ++|+..+++.|. +.++||--| T Consensus 719 ~~dv~aLv~~I~~~~~~lgg~Ld~Vvh~Ag 748 (1878) T 2uv9_A 719 KQDVEALVNYIYDTKNGLGWDLDYVVPFAA 748 (1878) T ss_dssp HHHHHHHHHHHHCSSSSCCCCCSEEEECCC T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCC T ss_conf 999999997416544766788787987885 No 120 >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Probab=43.00 E-value=12 Score=14.86 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=23.6 Q ss_pred CCCEEEEECHHH-------HHHHHHHHHHHHHHCCEEEEE Q ss_conf 983999941477-------899999999998718869984 Q gi|254780869|r 225 KGCVLVTTFSSS-------VSRIRSIIDIAEQIGRKIVLL 257 (559) Q Consensus 225 ~grViv~~fasn-------i~Ri~~i~~~a~~~~R~v~i~ 257 (559) +.++++-|..+| .++++++++.|++.+--|+.+ T Consensus 172 ~~~~~i~~nP~NPtG~v~s~e~l~~l~~la~~~~~~iI~D 211 (412) T 2x5d_A 172 KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHD 211 (412) T ss_dssp CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE T ss_pred CCEEEEECCCCCCCCEECCHHHHHHHHHHHHHCCCEEEEE T ss_conf 7379997899998670179999999999999769618862 No 121 >1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase, PHI, structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3 Probab=41.16 E-value=13 Score=14.66 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=27.8 Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 02689669999615886177899999765103113430 Q gi|254780869|r 321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA 358 (559) Q Consensus 321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~ 358 (559) .++++|.+|+-|.. |+-+.+-.+.+...+.|++++. T Consensus 79 ~~~~~Dv~i~iS~s--G~t~~~i~~~~~ak~~g~~vI~ 114 (180) T 1jeo_A 79 SYEKDDLLILISGS--GRTESVLTVAKKAKNINNNIIA 114 (180) T ss_dssp CCCTTCEEEEEESS--SCCHHHHHHHHHHHTTCSCEEE T ss_pred CCCCCCEEEEECCC--CCCHHHHHHHHHHHHCCCCEEE T ss_conf 68999989997599--9808999999999975997999 No 122 >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal- kingston bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori 26695} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* Probab=40.59 E-value=13 Score=14.61 Aligned_cols=140 Identities=13% Similarity=0.148 Sum_probs=60.7 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHH-HHHCC--EEEEECHHHHHHHHHHHHCCC----CCC-CCCCC Q ss_conf 87999999999862798399994147789999999999-87188--699844869999998874287----677-65422 Q gi|254780869|r 210 EKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIA-EQIGR--KIVLLGSSLKRVVSVAIDVGI----IKK-DQLFL 281 (559) Q Consensus 210 E~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a-~~~~R--~v~i~Grs~~~~~~~a~~~g~----l~~-~~~~i 281 (559) -..+++.+.+.+ +.+. ++..+.+ -.=+..++.+. .+.|. .|.+-.-+......+....|. ++. +.... T Consensus 34 v~~fE~~la~~~-g~~~-~i~~~SG--t~Al~~al~al~~~~gd~~eVi~p~~t~~a~~~ai~~~G~~pvfvDvd~~~~~ 109 (375) T 2fnu_A 34 SLLFEEALCEFL-GVKH-ALVFNSA--TSALLTLYRNFSEFSADRNEIITTPISFVATANMLLESGYTPVFAGIKNDGNI 109 (375) T ss_dssp HHHHHHHHHHHH-TCSE-EEEESCH--HHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSB T ss_pred HHHHHHHHHHHH-CCCE-EEEECCH--HHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCC T ss_conf 999999999997-8095-9997378--99999999984777899887983697537508999868998864201133458 Q ss_pred CHHHHCC-C-CCCCEEEEEECCCCCH--HHHHHHHCCCCCC---------------CC-CCCCCCEEEEEE---ECCCC- Q ss_conf 6566223-8-8020899996696326--8898852027776---------------53-026896699996---15886- Q gi|254780869|r 282 SDESFGL-Y-PREQLIVIATGSQGEP--RSALAQLSRGEMR---------------NV-KLAEKDTVIFSS---RAIPG- 337 (559) Q Consensus 282 ~~~~~~~-~-p~~~~~ii~TGsqge~--~a~l~ria~~~~~---------------~i-~l~~~D~vI~ss---~~ipG- 337 (559) .+.+... . ++-+.+ +.+-.-|.+ ...+..++....- .- .-.-||.-+||. +.++. T Consensus 110 ~~~~~~~~~~~~tkai-i~vh~~G~~~d~~~i~~~~~~~~i~lIEDaa~a~Ga~~~~~~~G~~gd~~~fSf~~~K~i~~g 188 (375) T 2fnu_A 110 DELALEKLINERTKAI-VSVDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTA 188 (375) T ss_dssp CGGGSGGGCCTTEEEE-EEECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCS T ss_pred CHHHHHHHCCCCCEEE-EEECCCCCCCCHHHHHHHHHHCCCHHHCCHHHCCCCEECCCCCCCCCCEEECCCCCCCCCCCC T ss_conf 9899998548887399-993563555577999999875042102016565797330512776643002146666455446 Q ss_pred -------HHHHHHHHHHHHHCCCE Q ss_conf -------17789999976510311 Q gi|254780869|r 338 -------NEVAIGHIKNRLVEQGV 354 (559) Q Consensus 338 -------nE~~~~~~~n~l~~~g~ 354 (559) |.+..+.-+..+...|. T Consensus 189 eGG~i~t~~~~~~~~~~~~~~~g~ 212 (375) T 2fnu_A 189 EGGAVVTNDSELHEKMKLFRSHGM 212 (375) T ss_dssp SCEEEEESCHHHHHHHHHHTBTTE T ss_pred CCCEEEECCHHHHHHHHHHHHHCC T ss_conf 551476089999998889998387 No 123 >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics, NPPSFA; HET: PLP; 1.15A {Thermus thermophilus HB8} Probab=38.38 E-value=8.3 Score=16.11 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=34.7 Q ss_pred HHHHHCCEEEEEE--EECCC-CC-----EEECCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 9740387499999--98389-98-----8005379994012125665889999999999999852200368989999999 Q gi|254780869|r 459 RQLSFVGHLSVNV--LLDNH-YN-----IFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESI 530 (559) Q Consensus 459 ~~Ls~~GiV~V~v--iid~~-~~-----l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~i 530 (559) +.|...|+.+--- ..|.+ .. =++.|.+++||+ .+++...+.+.+.+. +.+ .+.+.++++| T Consensus 330 ~~Le~~gI~~Nkn~iP~D~~~~~~~sGiRiGT~a~TtrG~--~e~dm~~IA~~I~~~----l~~------~~~~~lr~eV 397 (407) T 2dkj_A 330 ERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGF--TPEEMPLVAELIDRA----LLE------GPSEALREEV 397 (407) T ss_dssp HHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTC--CGGGHHHHHHHHHHH----HHH------CCCHHHHHHH T ss_pred HHHHHCCEEECCCCCCCCCCCCCCCCCCEECCHHHHHCCC--CHHHHHHHHHHHHHH----HHC------CCHHHHHHHH T ss_conf 9999849187567588999999999852667789985899--889999999999999----864------9869999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254780869|r 531 SSALRS 536 (559) Q Consensus 531 r~~irk 536 (559) ++.+++ T Consensus 398 ~~l~~~ 403 (407) T 2dkj_A 398 RRLALA 403 (407) T ss_dssp HHHHHT T ss_pred HHHHHH T ss_conf 999982 No 124 >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, cytoplasm, one-carbon metabolism, pyridoxal phosphate; 1.60A {Burkholderia pseudomallei} Probab=37.14 E-value=4.7 Score=17.87 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=37.3 Q ss_pred HHHHHCCEEEEEEEE--CCCC-C-----EEECCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 974038749999998--3899-8-----8005379994012125665889999999999999852200368989999999 Q gi|254780869|r 459 RQLSFVGHLSVNVLL--DNHY-N-----IFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESI 530 (559) Q Consensus 459 ~~Ls~~GiV~V~vii--d~~~-~-----l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~i 530 (559) +.|...|+.+=--.+ |.+. . =++.|.+++||+- +.+...+.+.+.+ .+..+....+.| ....+.+ T Consensus 339 ~~Le~~gI~vNkn~iP~D~~~~~~~sGiRiGT~aiTtrG~~--e~dm~~iA~lI~~----~l~~~~~~~~~d-~~~~~~i 411 (425) T 3ecd_A 339 QALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFG--AAEFREVGRLILE----VFEALRTNPEGD-HATEQRV 411 (425) T ss_dssp HHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCC--HHHHHHHHHHHHH----HHHHHHHCTTCC-HHHHHHH T ss_pred HHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCC--HHHHHHHHHHHHH----HHHHHHCCCCCC-HHHHHHH T ss_conf 99997195865674889999899998616577899848998--8999999999999----999743377554-8999999 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q gi|254780869|r 531 SSALRSLL 538 (559) Q Consensus 531 r~~irk~~ 538 (559) |+.|..++ T Consensus 412 r~~V~~l~ 419 (425) T 3ecd_A 412 RREIFALC 419 (425) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999999 No 125 >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} Probab=36.92 E-value=15 Score=14.21 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=46.4 Q ss_pred CCCHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-EEEEECHHHHHHHHHHHHHHHHHC Q ss_conf 389889986----087882999963564578887777879999999998627983-999941477899999999998718 Q gi|254780869|r 177 VTDKDSLCA----IGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGC-VLVTTFSSSVSRIRSIIDIAEQIG 251 (559) Q Consensus 177 ~~d~~~l~~----~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~gr-Viv~~fasni~Ri~~i~~~a~~~~ 251 (559) ..|+..+.+ +-+.||+.++.-+|.+ ++.+.|..+-.+-++.+.+..++| .++++-+.+........+.|++.| T Consensus 29 ~iD~~~~~~~i~~l~~~Gv~gl~i~GstG--E~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~st~~~i~~a~~a~~~G 106 (314) T 3d0c_A 29 EIDWKGLDDNVEFLLQNGIEVIVPNGNTG--EFYALTIEEAKQVATRVTELVNGRATVVAGIGYSVDTAIELGKSAIDSG 106 (314) T ss_dssp CBCHHHHHHHHHHHHHTTCSEECTTSGGG--TGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECEECC--CHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCC T ss_conf 83999999999999976999899685000--0534899999999998888709951499746888899999999999729 Q ss_pred CEEEE Q ss_conf 86998 Q gi|254780869|r 252 RKIVL 256 (559) Q Consensus 252 R~v~i 256 (559) =.-++ T Consensus 107 ad~i~ 111 (314) T 3d0c_A 107 ADCVM 111 (314) T ss_dssp CSEEE T ss_pred CCEEE T ss_conf 88442 No 126 >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Probab=36.87 E-value=15 Score=14.21 Aligned_cols=84 Identities=17% Similarity=0.191 Sum_probs=51.2 Q ss_pred EEEEEC-CCCCHHHHHHHHCCCCCCCCCCCCCCE-EEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCC Q ss_conf 999966-963268898852027776530268966-999961588617789999976510311343035666413157889 Q gi|254780869|r 295 IVIATG-SQGEPRSALAQLSRGEMRNVKLAEKDT-VIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPY 372 (559) Q Consensus 295 ~ii~TG-sqge~~a~l~ria~~~~~~i~l~~~D~-vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~ 372 (559) .+|+|| .+|...+.+.|-. +..|-+ +++.|+..|-.......+...+...|+++...-++ =++ T Consensus 677 tvLVTGaG~GsIGa~Var~L--------l~~GArvlVltSR~~~~~~~~a~~l~~el~a~Ga~l~vvp~d-------~as 741 (1887) T 2uv8_A 677 YVLITGAGKGSIGAEVLQGL--------LQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFN-------QGS 741 (1887) T ss_dssp EEEEESCCSSSHHHHHHHHH--------HHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECC-------TTC T ss_pred EEEEECCCCCHHHHHHHHHH--------HHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECC-------CCC T ss_conf 79997998756999999999--------967983999347888576408999999997089879999699-------889 Q ss_pred HHHHHHHHHHC-----------CCCEEEEECC Q ss_conf 78999999754-----------9539997045 Q gi|254780869|r 373 PNDLKRMYQWI-----------RPQVLVAIHG 393 (559) Q Consensus 373 ~edl~~li~~i-----------kPk~~IPvHG 393 (559) ++|+..|++.+ .+.+++|.-| T Consensus 742 ~~dv~aLv~~I~~~~~~~~~~~~ld~v~P~Aa 773 (1887) T 2uv8_A 742 KQDVEALIEFIYDTEKNGGLGWDLDAIIPFAA 773 (1887) T ss_dssp HHHHHHHHHHHHSCTTTTSCCCCCSEEEECCC T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE T ss_conf 99999999875321011234577565665764 No 127 >2g7z_A Conserved hypothetical protein SPY1493; long-fatty acid binding protein, lipid binding protein, PSI, MCSG; HET: MSE HXA; 2.05A {Streptococcus pyogenes serotype M1} Probab=36.50 E-value=15 Score=14.17 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=33.5 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHH-HHHHHHHHHCCEEEEEC Q ss_conf 777787999999999862798399994147789999-99999987188699844 Q gi|254780869|r 206 TCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIR-SIIDIAEQIGRKIVLLG 258 (559) Q Consensus 206 ~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~-~i~~~a~~~~R~v~i~G 258 (559) ..||..++.+.++++.++.-..|++-+.||.+.-.. ++..+|+..+.+|.+.. T Consensus 66 S~ps~~~~~~~~~~~~~~gyd~ii~i~iSs~LSgty~~a~~a~~~~~~~i~ViD 119 (282) T 2g7z_A 66 SQPPVGLFAETYENLVKKGVTDIVAIHLSPALSGTIEASRQGAEIAEAPVTVLD 119 (282) T ss_dssp ECCCHHHHHHHHHHHHHTTCCEEEEEECCTTTCTHHHHHHHHHHHHTCCEEEEE T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 898999999999999866997699996575365899999999624599889991 No 128 >3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* Probab=36.19 E-value=16 Score=14.14 Aligned_cols=42 Identities=10% Similarity=0.140 Sum_probs=31.4 Q ss_pred HHHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEE Q ss_conf 999998627-983999941-477899999999998718869984 Q gi|254780869|r 216 NIYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLL 257 (559) Q Consensus 216 ~i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~ 257 (559) .+.++++.+ ++.--|++| ..|++-++.++++|++.+.+|.+. T Consensus 8 ~~~eiL~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq 51 (349) T 3elf_A 8 VYAEMLGQAKQNSYAFPAINCTSSETVNAAIKGFADAGSDGIIQ 51 (349) T ss_dssp HHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEE T ss_pred HHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEE T ss_conf 99999999998792799977699999999999999978997998 No 129 >3kts_A Glycerol uptake operon antiterminator regulatory protein; structural genomics, PSI-2, protein structure initiative; HET: UNL; 2.75A {Listeria monocytogenes str} Probab=35.60 E-value=16 Score=14.07 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=29.0 Q ss_pred HHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEE Q ss_conf 999998627983999941477899999999998718869984 Q gi|254780869|r 216 NIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL 257 (559) Q Consensus 216 ~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~ 257 (559) .+++.+ +++.++++-.+ .|+..+.++++.+++.|+++++. T Consensus 21 ~le~al-~s~~~~iflL~-g~I~~l~~iv~~~k~~gK~vfVH 60 (192) T 3kts_A 21 DMEKIL-ELDLTYMVMLE-THVAQLKALVKYAQAGGKKVLLH 60 (192) T ss_dssp HHHHHT-TSSCCEEEECS-EETTTHHHHHHHHHHTTCEEEEE T ss_pred HHHHHH-CCCCCEEEEEC-CCHHHHHHHHHHHHHCCCEEEEE T ss_conf 999997-58998999953-71877999999999879989998 No 130 >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} Probab=35.58 E-value=9.6 Score=15.64 Aligned_cols=71 Identities=18% Similarity=0.194 Sum_probs=37.1 Q ss_pred HHHHHHCCEEEE--EEEECCC------CCEEECCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 997403874999--9998389------98800537999401212566588999999999999985220036898999999 Q gi|254780869|r 458 RRQLSFVGHLSV--NVLLDNH------YNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRES 529 (559) Q Consensus 458 R~~Ls~~GiV~V--~viid~~------~~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~ 529 (559) .+.|...|+++= .+..|.+ |==++.|.+++||+- +.+...+. +.+.+.+... ...+..+++++ T Consensus 355 ~~~Le~agI~vNkn~iP~D~~~~~~~sGIRlGT~eiT~rG~~--e~dm~~IA----~lI~~al~~~---~~~~i~~ir~~ 425 (447) T 3h7f_A 355 EDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFG--DTEFTEVA----DIIATALATG---SSVDVSALKDR 425 (447) T ss_dssp HHHHHHTTEECBC-------------CEEEEECHHHHHHTCC--HHHHHHHH----HHHHHHHHSG---GGCCHHHHHHH T ss_pred HHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCC--HHHHHHHH----HHHHHHHHCC---CHHHHHHHHHH T ss_conf 999997191878888989999998898407687899858998--89999999----9999998448---86779999999 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q gi|254780869|r 530 ISSALRSL 537 (559) Q Consensus 530 ir~~irk~ 537 (559) ++..+++| T Consensus 426 V~~l~~~F 433 (447) T 3h7f_A 426 ATRLARAF 433 (447) T ss_dssp HHHHHHHS T ss_pred HHHHHHHC T ss_conf 99999858 No 131 >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Probab=35.17 E-value=16 Score=14.03 Aligned_cols=83 Identities=13% Similarity=0.138 Sum_probs=41.9 Q ss_pred CCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCC----------CCCCEEEECCC---HHHHHHHHHC Q ss_conf 9886399994068683466069999517778648999776767888----------76750287079---5798766412 Q gi|254780869|r 1 MKNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKD----------DLPGVDLVFPD---ITFIMKERKN 67 (559) Q Consensus 1 m~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD~G~~fp~~----------~~~gid~iiPd---~~~l~~~~~~ 67 (559) |+..+ +++-.||.|-||++. +....+...+..++.=.-.-... ...|++++.-| .+.|.+-... T Consensus 1 m~~k~-kILVtGatG~iG~~l--v~~Ll~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~gv~v~~~D~~d~~~l~~a~~~ 77 (308) T 1qyc_A 1 MGSRS-RILLIGATGYIGRHV--AKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKN 77 (308) T ss_dssp -CCCC-CEEEESTTSTTHHHH--HHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHT T ss_pred CCCCC-EEEEECCCCHHHHHH--HHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH T ss_conf 98999-799989883899999--999997889699998888655567777777765038958999646543556887520 Q ss_pred CCEEEEECCCCCCCCCHHH Q ss_conf 4689960543012160788 Q gi|254780869|r 68 LMAIFITHAHEDHYGALHD 86 (559) Q Consensus 68 i~~i~iTH~H~DHiGalp~ 86 (559) +++++.+++..+.-+.... T Consensus 78 ~d~v~~~~~~~~~~~~~~l 96 (308) T 1qyc_A 78 VDVVISTVGSLQIESQVNI 96 (308) T ss_dssp CSEEEECCCGGGSGGGHHH T ss_pred CEEEEECCCCCCCCCCCHH T ss_conf 4157632565323342068 No 132 >3f0h_A Aminotransferase; RER070207000802, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE LLP; 1.70A {Eubacterium rectale} Probab=34.36 E-value=17 Score=13.94 Aligned_cols=20 Identities=10% Similarity=-0.132 Sum_probs=10.4 Q ss_pred HHHHHHHHHHHHCCEEEEEC Q ss_conf 99999999987188699844 Q gi|254780869|r 239 RIRSIIDIAEQIGRKIVLLG 258 (559) Q Consensus 239 Ri~~i~~~a~~~~R~v~i~G 258 (559) -+..|.++|++.|-.+++++ T Consensus 162 di~~I~~i~~~~~~~lvvD~ 181 (376) T 3f0h_A 162 DTMMIGEFCKKNNMFFVCDC 181 (376) T ss_dssp CHHHHHHHHHHTTCEEEEEC T ss_pred CHHHHHHHHHHCCCEEEEEC T ss_conf 73676766640595589865 No 133 >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* Probab=33.99 E-value=14 Score=14.43 Aligned_cols=266 Identities=15% Similarity=0.117 Sum_probs=122.2 Q ss_pred HHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEEC-HHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCC Q ss_conf 99998627-983999941-4778999999999987188699844-86999999887428767765422656622388020 Q gi|254780869|r 217 IYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLLG-SSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQ 293 (559) Q Consensus 217 i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~G-rs~~~~~~~a~~~g~l~~~~~~i~~~~~~~~p~~~ 293 (559) +.++++.+ +++-.|++| ..|.+-++.++++|++.+.+|.+.. .+..++. |+ +.....+. .-+.+.+.-. T Consensus 5 ~k~ll~~A~~~~yaV~AfNv~~~e~~~avi~AAe~~~sPvIlq~s~~~~~~~------g~-~~~~~~~~-~~a~~~~~Vp 76 (307) T 3n9r_A 5 GNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYM------GI-DMAVGMVK-IMCERYPHIP 76 (307) T ss_dssp HHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHHHHHTCCEEEEEEHHHHHHH------CH-HHHHHHHH-HHHHHSTTSC T ss_pred HHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCCEEEECCHHHHHHC------CH-HHHHHHHH-HHHHHCCCCE T ss_conf 8999999998893799876799999999999999979998998487687567------98-99999999-9997569980 Q ss_pred E-EEEEECCCCCHHHHHHHHCCCCCCCCCCCCC-CEEEEEEECCCCHHHHHHHHH---HHHHCCCEEEEE-----CCCCC Q ss_conf 8-9999669632688988520277765302689-669999615886177899999---765103113430-----35666 Q gi|254780869|r 294 L-IVIATGSQGEPRSALAQLSRGEMRNVKLAEK-DTVIFSSRAIPGNEVAIGHIK---NRLVEQGVRVIA-----EDAEC 363 (559) Q Consensus 294 ~-~ii~TGsqge~~a~l~ria~~~~~~i~l~~~-D~vI~ss~~ipGnE~~~~~~~---n~l~~~g~~vi~-----~~~~~ 363 (559) + +=+-.| ..+....+. ++.| +.|.|=.+.-| .|..+..+. +.-.+.|+.|=- .+.+. T Consensus 77 v~lHLDH~---~~~e~i~~a---------i~~GftSVMiDgS~lp-~eeNi~~T~~vve~Ah~~gv~VEaElG~igg~e~ 143 (307) T 3n9r_A 77 VALHLDHG---TTFESCEKA---------VKAGFTSVMIDASHHA-FEENLELTSKVVKMAHNAGVSVEAELGRLMGIED 143 (307) T ss_dssp EEEEEEEE---CSHHHHHHH---------HHHTCSEEEECCTTSC-HHHHHHHHHHHHHHHHHTTCEEEEEESCCCCC-- T ss_pred EEEECCCC---CCHHHHHHH---------HHCCCCEEEEECCCCC-HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC T ss_conf 89971787---999999999---------9719986886099899-9999999999999982539828987412157678 Q ss_pred CE----ECCCCCCHHHHHHHHHHCCCCEEEE----ECCCHH-------HHHHHHHHHHHCCCCCEEEECCCEEEEECCCC Q ss_conf 41----3157889789999997549539997----045779-------99999987874478631550032278973897 Q gi|254780869|r 364 PV----HVSGHPYPNDLKRMYQWIRPQVLVA----IHGEPL-------HLVAHKELALQEGIACVPPVRNGKMLRLFPDP 428 (559) Q Consensus 364 ~i----H~SGHa~~edl~~li~~ikPk~~IP----vHGe~r-------hl~~h~~la~~~gv~~i~l~~NGd~i~l~~~~ 428 (559) .. +-+--.+.+|-+.+++...+..+-+ +||.|. .+..-++++...++|-++ .-|.-+ ++. T Consensus 144 ~~~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiGn~HG~yk~~~~p~ld~~~l~~I~~~~~vPLVl--HG~S~v---~d~ 218 (307) T 3n9r_A 144 NISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVL--HGASAI---PDN 218 (307) T ss_dssp --------CCSCCHHHHHHHHHHHCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHHHHCSCEEE--SSCCCC---CHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEC--CCCCCC---CHH T ss_conf 766555321247989999998710887342211223367778898776899999988505886554--788766---177 Q ss_pred EEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEEECCCCCEEECCEEEEECCEECCCCHHHHHHHHHHHH Q ss_conf 04501232132021233100255058899997403874999999838998800537999401212566588999999999 Q gi|254780869|r 429 IEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLLDNHYNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTV 508 (559) Q Consensus 429 ~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~viid~~~~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i 508 (559) .+ ....+.+-.+..|.++- ..+-++...+|+.=+++-- ++.....+.+ T Consensus 219 ~~-~~~~~~~~~~HG~sG~p------~e~i~~ai~~Gi~KiNi~T-------------------------~l~~a~~~~~ 266 (307) T 3n9r_A 219 VR-KSYLDAGGDLKGSKGVP------FEFLQESVKGGINKVNTDT-------------------------DLRIAFIAEV 266 (307) T ss_dssp HH-HHHHHTTCCCTTCBCCC------HHHHHHHHHTTEEEEEECH-------------------------HHHHHHHHHH T ss_pred HH-HHHHCCCCCCCCCCCCC------HHHHHHHHHCCCEEEEECH-------------------------HHHHHHHHHH T ss_conf 77-76401233467888999------9999999977946999787-------------------------9999999999 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999852200368989999999999999999982 Q gi|254780869|r 509 ITTVVDLPQFRRKDLKLLRESISSALRSLLKKVW 542 (559) Q Consensus 509 ~~~i~~~~~~~~~d~~~lk~~ir~~irk~~~k~~ 542 (559) .+.+.+. ....|...+-+..+.+++..+.+++ T Consensus 267 ~~~~~~~--~~~~d~~~~~~~~~~a~~~~v~~~i 298 (307) T 3n9r_A 267 RKVANED--KSQFDLRKFFSPAQLALKNVVKERM 298 (307) T ss_dssp HHHHHHC--TTCCCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 9999849--8768989999999999999999999 No 134 >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Probab=33.98 E-value=8.8 Score=15.92 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=24.6 Q ss_pred HHHHHHHHHCCEEEEEEEECCCCCEEECCEE-EEECC Q ss_conf 8999974038749999998389988005379-99401 Q gi|254780869|r 455 IAKRRQLSFVGHLSVNVLLDNHYNIFGVPEI-VDIGI 490 (559) Q Consensus 455 l~eR~~Ls~~GiV~V~viid~~~~l~~~P~I-~~~Gl 490 (559) -.+-++...+|.|.|.+.||.+|++.. .+| .+-|. T Consensus 154 p~~A~r~~~~G~v~V~f~I~~~G~V~~-v~i~~SSG~ 189 (229) T 2grx_C 154 PARAQALRIEGQVKVKFDVTPDGRVDN-VQILSAKPA 189 (229) T ss_dssp CHHHHHHTCCEEECEEEECCTTSCCEE-EEECCCSSS T ss_pred CHHHHHCCCCCEEEEEEEECCCCCEEE-EEEEECCCC T ss_conf 099997689877999999828998968-899866896 No 135 >2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A Probab=33.17 E-value=17 Score=13.81 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=27.8 Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 02689669999615886177899999765103113430 Q gi|254780869|r 321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA 358 (559) Q Consensus 321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~ 358 (559) ..+++|.+|.-|.- |+-+.+-+.+..--+.|++++. T Consensus 128 ~~~~gDvli~iS~S--G~s~nvi~al~~Ak~~G~~ti~ 163 (212) T 2i2w_A 128 VGREGDVLLGISTS--GNSANVIKAIAAAREKGMKVIT 163 (212) T ss_dssp HCCTTCEEEEECSS--SCCHHHHHHHHHHHHHTCEEEE T ss_pred HCCCCCEEEEEECC--CCCCCHHHHHHHHHHCCCEEEE T ss_conf 57898879998089--9983289999999985998999 No 136 >3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} Probab=32.85 E-value=17 Score=13.77 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=4.0 Q ss_pred HHHHHHCCCE Q ss_conf 9976510311 Q gi|254780869|r 345 IKNRLVEQGV 354 (559) Q Consensus 345 ~~n~l~~~g~ 354 (559) ..+.+.+.|. T Consensus 203 f~~~~~~~~~ 212 (338) T 3dbi_A 203 YKDALAQHGI 212 (338) T ss_dssp HHHHHHHTTC T ss_pred HHHHHHHCCC T ss_conf 9999998599 No 137 >3ke8_A 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; induced FIT mechanism, FS4-iron-sulfure-cluster, 3Fe-4S, iron, iron-sulfur; HET: EIP; 1.70A {Escherichia coli} PDB: 3ke9_A* 3kef_A* 3kel_A 3kem_A* 3f7t_A Probab=32.65 E-value=18 Score=13.75 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=24.9 Q ss_pred HHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHH Q ss_conf 99998627983999941477899999999998718869984486 Q gi|254780869|r 217 IYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSS 260 (559) Q Consensus 217 i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs 260 (559) ..+..++ +|.-++-+=-.-+.+++..++-..+-|.+++++|.. T Consensus 90 ~~~~~~~-~g~~viDaTCP~V~kvh~~v~~~~~~Gy~iiiiG~~ 132 (326) T 3ke8_A 90 VRNEAKS-RDLTVFDATCPLVTKVHMEVARASRRGEESILIGHA 132 (326) T ss_dssp HHHHHHH-TTCEEEECCCHHHHHHHHHHHHHHHTTCEEEEESCT T ss_pred HHHHHHH-CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 9999997-799799687977359999999987189759999668 No 138 >3m92_A Protein YCIN; DUF2498, structural genomics, PSI-2, protein structure initi midwest center for structural genomics, MCSG, unknown funct; HET: MSE; 2.05A {Shigella flexneri 2A} Probab=32.46 E-value=18 Score=13.73 Aligned_cols=77 Identities=18% Similarity=0.212 Sum_probs=45.2 Q ss_pred ECCCCCCCCCHHHHHHHCC---CCEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCE Q ss_conf 0543012160788898629---9779299999999999985488655622551755557763489999855677776535 Q gi|254780869|r 74 THAHEDHYGALHDLWSFLH---VPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMA 150 (559) Q Consensus 74 TH~H~DHiGalp~l~~~~~---~pIY~s~~t~~li~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip~a~~ 150 (559) +|-|.-|..+-.-|+.++. -.-..++.+.-.+...+- +..+. -+.|..+ T Consensus 4 ~~~~~~~~~~~~~l~~~~hM~~~t~pI~r~~LL~~AN~iI-------------~~HeD---------------yl~GM~a 55 (107) T 3m92_A 4 SHHHHHHSSGRENLYFQGHMNKETQPIDRETLLKEANKII-------------REHED---------------TLAGIEA 55 (107) T ss_dssp ---------------------CCCEEECHHHHHHHHHHHH-------------HHHHH---------------HHTTCCE T ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH-------------HHHHH---------------HHCCCEE T ss_conf 5443323441366766410358876439999999999999-------------86687---------------7466341 Q ss_pred EEEEECCCEEEECCCCEECCCCCCCCCC Q ss_conf 6798768179983340246776654238 Q gi|254780869|r 151 LVIRSPVGNIVHTGDWKLDDDAILGDVT 178 (559) Q Consensus 151 ~~I~t~~g~i~ytGDfk~d~~p~~g~~~ 178 (559) -.++-.++.+||.|+|=+|+.++....+ T Consensus 56 ~~Veqk~~VLVFkGeyFLD~~GLPT~Kt 83 (107) T 3m92_A 56 TGVTQRNGVLVFTGDYFLDEQGLPTAKS 83 (107) T ss_dssp EEEEESSSCEEEEECCCCCTTSCCCHHH T ss_pred CEEEEECCEEEEECCEEECCCCCCCCCH T ss_conf 4034468989992334636899987620 No 139 >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, cytoplasm, one-carbon metabolism, pyridoxal phosphate; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 3g8m_A* 1eqb_A* Probab=31.94 E-value=17 Score=13.90 Aligned_cols=69 Identities=10% Similarity=0.113 Sum_probs=33.3 Q ss_pred HHHHHCCEEEEEE--EECCCCC------EEECCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 9740387499999--9838998------8005379994012125665889999999999999852200368989999999 Q gi|254780869|r 459 RQLSFVGHLSVNV--LLDNHYN------IFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESI 530 (559) Q Consensus 459 ~~Ls~~GiV~V~v--iid~~~~------l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~i 530 (559) +.|...|+.+=-- ..|.+.- =++.|.+++||+- +.|...+.+ .+.+.+... .| ....+++ T Consensus 338 ~~Le~~gI~vNkn~iP~D~~~~~~~sGiRiGT~a~TtrG~~--e~dm~~IA~----~I~~~l~~~-----~d-~~~~~~i 405 (420) T 3gbx_A 338 AALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFK--EAEVKELAG----WMCDVLDNI-----ND-EATIERV 405 (420) T ss_dssp HHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCC--HHHHHHHHH----HHHHHHHTT-----TC-HHHHHHH T ss_pred HHHHHHCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCC--HHHHHHHHH----HHHHHHHCC-----CC-HHHHHHH T ss_conf 99998295865773889998888998216577899858998--899999999----999999637-----98-8999999 Q ss_pred HHHHHHHHH Q ss_conf 999999999 Q gi|254780869|r 531 SSALRSLLK 539 (559) Q Consensus 531 r~~irk~~~ 539 (559) |+.|..++. T Consensus 406 r~~V~~l~~ 414 (420) T 3gbx_A 406 KAKVLDICA 414 (420) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999998 No 140 >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} Probab=31.76 E-value=18 Score=13.65 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=44.1 Q ss_pred HHHHHCCC-CEE-EEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCHHHHC-CCCCCCEE Q ss_conf 99862798-399-9941477899999999998718869984486999999887428767765422656622-38802089 Q gi|254780869|r 219 DIMKNAKG-CVL-VTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFG-LYPREQLI 295 (559) Q Consensus 219 ~~~~~~~g-rVi-v~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~l~~~~~~i~~~~~~-~~p~~~~~ 295 (559) +++++..| +|+ +.+ . .+++ .+++...+.+.+|.+.+|+..+.-..+.+.|. . .++.+++. .+..-+++ T Consensus 14 ~~~~~~~~kkilvIGa-G-~~~~--~~a~~L~~~~~~v~v~nRt~~ka~~la~~~~~-~----~~~~~~l~~~l~~~DiV 84 (144) T 3oj0_A 14 DIVRKNGGNKILLVGN-G-MLAS--EIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEY-E----YVLINDIDSLIKNNDVI 84 (144) T ss_dssp HHHHHHCCCEEEEECC-S-HHHH--HHGGGCCTTTCEEEEEESCHHHHHHHHHHHTC-E----EEECSCHHHHHHTCSEE T ss_pred HHHHHCCCCEEEEECC-H-HHHH--HHHHHHHHCCCEEEEEECCHHHHHHHHHHHCC-C----HHHHHHHHHHHHHCCEE T ss_conf 9998639999999997-8-9999--99999985698468981999999999875052-2----02242089999767989 Q ss_pred EEEECCCC Q ss_conf 99966963 Q gi|254780869|r 296 VIATGSQG 303 (559) Q Consensus 296 ii~TGsqg 303 (559) +.||+++. T Consensus 85 i~aT~s~~ 92 (144) T 3oj0_A 85 ITATSSKT 92 (144) T ss_dssp EECSCCSS T ss_pred EEECCCCC T ss_conf 99238997 No 141 >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* Probab=30.90 E-value=19 Score=13.55 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=28.2 Q ss_pred HHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHH----HHHHHHHHHHHHHHCCEEEEEC Q ss_conf 986087882999963564578887777879999999998627983999941477----8999999999987188699844 Q gi|254780869|r 183 LCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSS----VSRIRSIIDIAEQIGRKIVLLG 258 (559) Q Consensus 183 l~~~~~~gv~~Li~esT~~~~~~~~~sE~~v~~~i~~~~~~~~grViv~~fasn----i~Ri~~i~~~a~~~~R~v~i~G 258 (559) +..+.+.|+.+-..+.. ..|. .+- +.+++.+.. +-++++-+-.|| +.-+..|.++|++.|=.+++++ T Consensus 130 ~~~l~~~G~~v~~v~~~---~~g~-id~----~~l~~~i~~-~T~lV~~~~~sn~tG~i~pi~~I~~~~~~~g~~~~vD~ 200 (423) T 3lvm_A 130 CRQLEREGFEVTYLAPQ---RNGI-IDL----KELEAAMRD-DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDA 200 (423) T ss_dssp HHHHHHTTCEEEEECCC---TTSC-CCH----HHHHHHCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEEC T ss_pred HHHHHHCCCEEEEECCC---CCCC-CCH----HHHHHHCCC-CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEC T ss_conf 99999679789997789---9980-879----999975799-96799997898887505049999999855497799615 No 142 >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Probab=30.66 E-value=19 Score=13.52 Aligned_cols=214 Identities=13% Similarity=0.129 Sum_probs=91.7 Q ss_pred CCCEEEEEECCCCCCC-----CCCCCEE-EECC-CHHHHHHHHHCCCEEEEECCCCC-----CCCCHHHHHHHCCCCEEC Q ss_conf 7864899977676788-----8767502-8707-95798766412468996054301-----216078889862997792 Q gi|254780869|r 30 SSRKWIMIDCGVSFPK-----DDLPGVD-LVFP-DITFIMKERKNLMAIFITHAHED-----HYGALHDLWSFLHVPVYA 97 (559) Q Consensus 30 ~~~~~iiiD~G~~fp~-----~~~~gid-~iiP-d~~~l~~~~~~i~~i~iTH~H~D-----HiGalp~l~~~~~~pIY~ 97 (559) .++.++++|+|..|.. --.+|+. .|+| |.+.-+-...+++||+||-|... .....+.++ .+++||.+ T Consensus 28 ~~~kIlIlDFGsQYtqLIaRRiRElgVyseI~p~~~~~e~i~~~~p~GIILSGGP~SV~~~~ap~~~~~if-~l~iPILG 106 (697) T 2vxo_A 28 YEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIF-TIGKPVLG 106 (697) T ss_dssp -CCCEEEEEEC--CHHHHHHHHHHTTCCEEEEETTCCHHHHHHHTCSEEEEEECC-------CCCCCGGGT-TSSCCEEE T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHH-HCCCCEEE T ss_conf 78989999889549999999998519728997799999999616999999889998677999998899998-28999899 Q ss_pred CHHHHHHHHHHHHHCCCC------CCCCEEEECCCCEEEEC-CEEEEEEECCCC-----CCCCCEEEEEECCCEEEECCC Q ss_conf 999999999999854886------55622551755557763-489999855677-----776535679876817998334 Q gi|254780869|r 98 SPFAIGLLEAKRVYERVS------KKIPCISFQAGDKVDVG-AFSIESVRVNHS-----IPETMALVIRSPVGNIVHTGD 165 (559) Q Consensus 98 s~~t~~li~~~~~~~~~~------~~~~~~~i~~~~~~~~g-~~~v~~~~~~Hs-----ip~a~~~~I~t~~g~i~ytGD 165 (559) ==+...+|-..+--.-.. ....+. +..+..+--| +-+.. .-++|+ +|+.+-..-+|+. .+ .+ T Consensus 107 ICyG~Qlia~~fGG~V~~~~~rEyG~~~i~-i~~~s~LF~gl~~~~~-VwmSHgD~V~~lP~gf~viA~s~~-~i--aa- 180 (697) T 2vxo_A 107 ICYGMQMMNKVFGGTVHKKSVREDGVFNIS-VDNTCSLFRGLQKEEV-VLLTHGDSVDKVADGFKVVARSGN-IV--AG- 180 (697) T ss_dssp EEHHHHHHHHHTTCCBCC-------CEEEE-ECTTSGGGTTCCSEEE-ECCCSSCCBSSCCTTCEEEEEETT-EE--EE- T ss_pred ECHHHHHHHHHCCCEEEECCCCCCCCCEEE-ECCCCHHHCCCCCCCE-EEEECCCEEEECCCCEEEEEECCC-HH--HH- T ss_conf 879999999981998976797433640589-8279741058998767-974412067736820057751374-58--88- Q ss_pred CEECCCCCCCCCCCHHHHHHCCCCCCEE---EEECCCCCCCCCCCCC--HHHHHHHHHHHHHHCCCCEEEEECHHHHHHH Q ss_conf 0246776654238988998608788299---9963564578887777--8799999999986279839999414778999 Q gi|254780869|r 166 WKLDDDAILGDVTDKDSLCAIGNEGILA---LMCDSTNAMREGTCIS--EKGIKKNIYDIMKNAKGCVLVTTFSSSVSRI 240 (559) Q Consensus 166 fk~d~~p~~g~~~d~~~l~~~~~~gv~~---Li~esT~~~~~~~~~s--E~~v~~~i~~~~~~~~grViv~~fasni~Ri 240 (559) +.-...|+.|-.+..+-. .+..|-.+ ++-+--.+ .+.+++. +.+..+.+.+.+. +++|+++.+ --++.. T Consensus 181 i~~~~~~iyGVQFHPEV~--hT~~G~~iL~NFl~~Ic~~-~~~w~~~~~~~~~i~~Ir~~Vg--~~kVl~~lS-GGVDSt 254 (697) T 2vxo_A 181 IANESKKLYGAQFHPEVG--LTENGKVILKNFLYDIAGC-SGTFTVQNRELECIREIKERVG--TSKVLVLLS-GGVDST 254 (697) T ss_dssp EEETTTTEEEESSCTTSS--SSTTHHHHHHHHHTTTTCC-CSCCCHHHHHHHHHHHHHHHHT--TCEEEEECC-SSHHHH T ss_pred HHHCCCCEEEEEECCCCC--CCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEC-CCCCHH T ss_conf 862146657897354123--6810789999999988533-1223278899999999998628--844899505-872069 Q ss_pred HHHHHHHHHHC--CEEEE Q ss_conf 99999998718--86998 Q gi|254780869|r 241 RSIIDIAEQIG--RKIVL 256 (559) Q Consensus 241 ~~i~~~a~~~~--R~v~i 256 (559) ...+-+.++.| |-+++ T Consensus 255 V~A~Ll~kAlG~drl~~v 272 (697) T 2vxo_A 255 VCTALLNRALNQEQVIAV 272 (697) T ss_dssp HHHHHHHHHSCGGGEEEE T ss_pred HHHHHHHHHHCCCCEEEE T ss_conf 999999985164746999 No 143 >1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A Probab=30.51 E-value=19 Score=13.51 Aligned_cols=36 Identities=31% Similarity=0.269 Sum_probs=25.0 Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 02689669999615886177899999765103113430 Q gi|254780869|r 321 KLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIA 358 (559) Q Consensus 321 ~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g~~vi~ 358 (559) .+.++|++|+-|.. |+-+.+........+.|++++. T Consensus 76 ~l~~~Dl~I~iS~s--G~t~~~~~~~~~ak~~g~~ii~ 111 (186) T 1m3s_A 76 PLAEGDLVIIGSGS--GETKSLIHTAAKAKSLHGIVAA 111 (186) T ss_dssp CCCTTCEEEEECSS--SCCHHHHHHHHHHHHTTCEEEE T ss_pred CCCCCCEEEEECCC--CCCHHHHHHHHHHHHCCCEEEE T ss_conf 79999999998389--7514699999999987995999 No 144 >1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ... Probab=30.20 E-value=19 Score=13.47 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=28.3 Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHHHHHHCCC Q ss_conf 7899999765103113430356664131578897899999975-4953999704577999999987874478 Q gi|254780869|r 340 VAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQW-IRPQVLVAIHGEPLHLVAHKELALQEGI 410 (559) Q Consensus 340 ~~~~~~~n~l~~~g~~vi~~~~~~~iH~SGHa~~edl~~li~~-ikPk~~IPvHGe~rhl~~h~~la~~~gv 410 (559) ....-..+.+.+.+.+..... ....+-....+.+.++++. -+|..++- ...+ ......+.+.+.|+ T Consensus 196 ~R~~gf~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~-~A~g~~~~l~~~g~ 262 (349) T 1jye_A 196 LRLAGWHKYLTRNQIQPIAER---EGDWSAMSGFQQTMQMLNEGIVPTAMLV-ANDQ-MALGAMRAITESGL 262 (349) T ss_dssp HHHHHHHHHHHHTTCCCSEEE---ECCSSHHHHHHHHHHHHHTTCCCSEEEE-SSHH-HHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHCCCCCCEEE---ECCCCHHHHHHHHHHHHHCCCCCCEEEC-CCHH-HHHHHHHHHHHHCC T ss_conf 989999999997599975156---3576465589999999725999835643-8849-99999999998189 No 145 >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfuration; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Probab=29.42 E-value=20 Score=13.38 Aligned_cols=103 Identities=13% Similarity=0.144 Sum_probs=47.4 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEEC----HHHHHHHHHHHHCCCCCCCCCCCCH Q ss_conf 778799999999986279839999414778999999999987188699844----8699999988742876776542265 Q gi|254780869|r 208 ISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLG----SSLKRVVSVAIDVGIIKKDQLFLSD 283 (559) Q Consensus 208 ~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~G----rs~~~~~~~a~~~g~l~~~~~~i~~ 283 (559) |+-..+++.+.. +++++. . .+|+|=++-|..++. ..+.|..|+..+ -+..-.-+...+.|.--..-...+. T Consensus 133 PT~~~LE~~lA~-LEgge~-a--~~fsSGMAAIsavl~-ll~~Gd~VV~~~~lYg~T~~ll~~~~~~~Gi~v~~vd~~d~ 207 (464) T 1ibj_A 133 PTRDALESLLAK-LDKADR-A--FCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKL 207 (464) T ss_dssp HHHHHHHHHHHH-HHTCSE-E--EEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSH T ss_pred HHHHHHHHHHHH-HHCCCC-E--EEEHHHHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCC T ss_conf 789999999999-849993-9--983269999999999-86899989990897847999999999747865233387420 Q ss_pred HHHCCCCCCCEEEEEECCCCCH------HHHHHHHCCC Q ss_conf 6622388020899996696326------8898852027 Q gi|254780869|r 284 ESFGLYPREQLIVIATGSQGEP------RSALAQLSRG 315 (559) Q Consensus 284 ~~~~~~p~~~~~ii~TGsqge~------~a~l~ria~~ 315 (559) ++....-+.+.-+|..-+.+-| ..++.++|.. T Consensus 208 e~~~~ai~~~TklVf~EspsNP~l~v~DI~~ia~iA~~ 245 (464) T 1ibj_A 208 DEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHA 245 (464) T ss_dssp HHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHT T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH T ss_conf 34666516672499924899974414437999999876 No 146 >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3gay_A* 3gak_A* 3gb6_A* Probab=29.15 E-value=20 Score=13.35 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=75.0 Q ss_pred HHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEEEC-HHHHHHHHHHHHCCCCCCCCCCCC--HHHHCCCCC Q ss_conf 99998627-983999941-4778999999999987188699844-869999998874287677654226--566223880 Q gi|254780869|r 217 IYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVLLG-SSLKRVVSVAIDVGIIKKDQLFLS--DESFGLYPR 291 (559) Q Consensus 217 i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i~G-rs~~~~~~~a~~~g~l~~~~~~i~--~~~~~~~p~ 291 (559) +.++++.+ +++--|++| ..|.+-+..++++|++.+.+|.+.- .+-.++ .|.... ...+. ..+....| T Consensus 6 ~k~ll~~A~~~~yAV~AfNv~~~e~~~avi~AAee~~sPvIlq~s~~~~~~------~g~~~~-~~~~~~~~~~~~~VP- 77 (323) T 2isw_A 6 LRQMLGEARKHKYGVGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALKY------SDMIYL-KKLCEAALEKHPDIP- 77 (323) T ss_dssp HHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHH------TTTHHH-HHHHHHHHHHCTTSC- T ss_pred HHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCCEEEECCCCHHHH------CCHHHH-HHHHHHHHHHCCCCC- T ss_conf 999999999889579997538999999999999994999999978557866------897889-999999999759999- Q ss_pred CCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCC-CEEEEEEECCCCHHHHHHHH---HHHHHCCCEEEEE-----CCCC Q ss_conf 2089999669632688988520277765302689-66999961588617789999---9765103113430-----3566 Q gi|254780869|r 292 EQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEK-DTVIFSSRAIPGNEVAIGHI---KNRLVEQGVRVIA-----EDAE 362 (559) Q Consensus 292 ~~~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~-D~vI~ss~~ipGnE~~~~~~---~n~l~~~g~~vi~-----~~~~ 362 (559) =++-+-. |..+....+. ++.| +.|.|-.+.-| .|..+..+ .+.-...|+.|=- .+.+ T Consensus 78 -v~lHlDH---~~~~e~i~~a---------i~~GftSVMiDgS~lp-~eeNI~~Tk~vv~~Ah~~gv~VEaElG~vgg~e 143 (323) T 2isw_A 78 -ICIHLDH---GDTLESVKMA---------IDLGFSSVMIDASHHP-FDENVRITKEVVAYAHARSVSVEAELGTLGGIE 143 (323) T ss_dssp -EEEEEEE---ECSHHHHHHH---------HHTTCSEEEECCTTSC-HHHHHHHHHHHHHHHHTTTCEEEEEESCC---- T ss_pred -EEEECCC---CCCHHHHHHH---------HHHCCCEEEECCCCCC-HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC T ss_conf -8997999---8899999999---------9718986998388233-999999999999998653871899642036767 Q ss_pred CC-EECCCCCCHHHHHHHHHHCCCCEEEE----ECCCHH Q ss_conf 64-13157889789999997549539997----045779 Q gi|254780869|r 363 CP-VHVSGHPYPNDLKRMYQWIRPQVLVA----IHGEPL 396 (559) Q Consensus 363 ~~-iH~SGHa~~edl~~li~~ikPk~~IP----vHGe~r 396 (559) .. -..+.-.+.+|-+++++...+..+=+ +||-|. T Consensus 144 d~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGn~HG~yk 182 (323) T 2isw_A 144 EDVQNTVQLTEPQDAKKFVELTGVDALAVAIGTSHGAYK 182 (323) T ss_dssp ------CCCCCHHHHHHHHHHHCCSEEEECSSCCSSSBC T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCC T ss_conf 676554557998999999861188844201000036677 No 147 >2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5 Probab=28.90 E-value=20 Score=13.32 Aligned_cols=50 Identities=22% Similarity=0.098 Sum_probs=43.7 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEE Q ss_conf 77879999999998627983999941477899999999998718869984 Q gi|254780869|r 208 ISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL 257 (559) Q Consensus 208 ~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~ 257 (559) .+-..+.+.+++++++++..+++++-...+.++..-+..|.+-|-.|.+. T Consensus 6 k~~~~~l~~~~e~I~~A~~ei~ls~~~~~l~~l~~~L~~a~~rgV~v~l~ 55 (233) T 2f5t_X 6 RSFDEAIEMFRESLYSAKNEVIVVTPSEFFETIREDLIKTLERGVTVSLY 55 (233) T ss_dssp SCHHHHHHHHHHHHHTCSSEEEEEECGGGHHHHHHHHHHHHHTTCEEEEE T ss_pred ECHHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 54899999999999865629999939999999999999898589699999 No 148 >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransferase); PLP-binding enzyme, lysine biosynthesis, structural genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis H37RV} Probab=28.86 E-value=20 Score=13.31 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=15.6 Q ss_pred HHHHHHHHHHHHHHCCEEEEE Q ss_conf 899999999998718869984 Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIVLL 257 (559) Q Consensus 237 i~Ri~~i~~~a~~~~R~v~i~ 257 (559) .++++.++++|++.+--|+.. T Consensus 179 ~~~~~~l~~~~~~~~~~ii~D 199 (411) T 2o0r_A 179 ATELAAIAEIAVAANLVVITD 199 (411) T ss_dssp HHHHHHHHHHHHHTTCEEEEE T ss_pred HHHHCCCCCCCCCCEEEEECH T ss_conf 676402111244532589431 No 149 >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* Probab=28.36 E-value=20 Score=13.35 Aligned_cols=264 Identities=14% Similarity=0.130 Sum_probs=117.3 Q ss_pred HHHHHHHC-CCCEEEEEC-HHHHHHHHHHHHHHHHHCCEEEE-ECHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCC Q ss_conf 99998627-983999941-47789999999999871886998-4486999999887428767765422656622388020 Q gi|254780869|r 217 IYDIMKNA-KGCVLVTTF-SSSVSRIRSIIDIAEQIGRKIVL-LGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQ 293 (559) Q Consensus 217 i~~~~~~~-~grViv~~f-asni~Ri~~i~~~a~~~~R~v~i-~Grs~~~~~~~a~~~g~l~~~~~~i~~~~~~~~p~~~ 293 (559) +.++++.+ ++.--|++| ..|.+-+..++++|++.+.+|.+ .+.+..++... .. .......-+....|- T Consensus 5 ~k~iL~~A~~~~yaV~Afnv~~~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~--~~-----~~~~~~~a~~~~Vpv-- 75 (305) T 1rvg_A 5 GLEILKKAREEGYGVGAFNVNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGR--AL-----TLMAVELAKEARVPV-- 75 (305) T ss_dssp HHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHH--HH-----HHHHHHHHHHCSSCE-- T ss_pred HHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCCEEEECCCCHHHHCCH--HH-----HHHHHHHHHHCCCCE-- T ss_conf 899999999889279987679899999999999996999999987457766438--99-----999999876659998-- Q ss_pred EEEEEECCCCCHHHHHHHHCCCCCCCCCCCCC-CEEEEEEECCCCHHHHHHHHH---HHHHCCCEEEEE-----CCCCCC Q ss_conf 89999669632688988520277765302689-669999615886177899999---765103113430-----356664 Q gi|254780869|r 294 LIVIATGSQGEPRSALAQLSRGEMRNVKLAEK-DTVIFSSRAIPGNEVAIGHIK---NRLVEQGVRVIA-----EDAECP 364 (559) Q Consensus 294 ~~ii~TGsqge~~a~l~ria~~~~~~i~l~~~-D~vI~ss~~ipGnE~~~~~~~---n~l~~~g~~vi~-----~~~~~~ 364 (559) ++=+-.|. ......+ .++.| +.|.|-.+.-| .|..+..+. +.-...|+.|=- .+.+.. T Consensus 76 alHlDH~~---~~e~i~~---------ai~~GftSVMiDgS~l~-~eeNi~~T~~vv~~Ah~~gv~VEaElG~igg~Ed~ 142 (305) T 1rvg_A 76 AVHLDHGS---SYESVLR---------ALRAGFTSVMIDKSHED-FETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEH 142 (305) T ss_dssp EEEEEEEC---SHHHHHH---------HHHTTCSEEEECCTTSC-HHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC- T ss_pred EEECCCCC---CHHHHHH---------HHHCCCCEEEECCCCCC-HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC T ss_conf 99745557---9888999---------98749987986499888-89999999999998615188766502212565555 Q ss_pred E----ECCCCCCHHHHHHHHHHCCCCEEEE----ECCCHH-------HHHHHHHHHHHCCCCCEEEECCCEEEEECCCCE Q ss_conf 1----3157889789999997549539997----045779-------999999878744786315500322789738970 Q gi|254780869|r 365 V----HVSGHPYPNDLKRMYQWIRPQVLVA----IHGEPL-------HLVAHKELALQEGIACVPPVRNGKMLRLFPDPI 429 (559) Q Consensus 365 i----H~SGHa~~edl~~li~~ikPk~~IP----vHGe~r-------hl~~h~~la~~~gv~~i~l~~NGd~i~l~~~~~ 429 (559) . +-+.-.+.+|-+++++...+..+=+ +||.|. .+..-+++.....+|-++ .-|..+ .. T Consensus 143 ~~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiGn~HG~yk~~~~~~l~~~~l~~i~~~~~~PLvl--HG~S~~-----~~ 215 (305) T 1rvg_A 143 VAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVL--HGASAV-----PP 215 (305) T ss_dssp -----CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCCSCEEE--CSCCCC-----CH T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEE--ECCCCC-----CH T ss_conf 56664324568999999999975887685430224576688888662488999996167998786--689777-----37 Q ss_pred EEEEE-EECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEEECCCCCEEECCEEEEECCEECCCCHHHHHHHHHHHH Q ss_conf 45012-32132021233100255058899997403874999999838998800537999401212566588999999999 Q gi|254780869|r 430 EIIDE-VVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLLDNHYNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTV 508 (559) Q Consensus 430 ~i~~~-v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~viid~~~~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i 508 (559) ..... .++|-.+--+.|+. -.+-++.-..|+.=|++- .++.....+.+ T Consensus 216 ~~~~~~~~~~~~lHG~sG~~------~e~i~~ai~~GI~KiNi~-------------------------T~l~~a~~~~l 264 (305) T 1rvg_A 216 ELVERFRASGGEIGEAAGIH------PEDIKKAISLGIAKINTD-------------------------TDLRLAFTALI 264 (305) T ss_dssp HHHHHHHHTTCCCCSCBCCC------HHHHHHHHHTTEEEEEEC-------------------------HHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCCCCCCC------HHHHHHHHHCCCEEEEEC-------------------------HHHHHHHHHHH T ss_conf 77777630476557778999------999999998695599978-------------------------18999999999 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999852200368989999999999999999982 Q gi|254780869|r 509 ITTVVDLPQFRRKDLKLLRESISSALRSLLKKVW 542 (559) Q Consensus 509 ~~~i~~~~~~~~~d~~~lk~~ir~~irk~~~k~~ 542 (559) .+.+.+. ....|...+-+..+.++++.+++++ T Consensus 265 ~~~~~~n--~~~~d~~~~~~~~~~a~~~~v~~~i 296 (305) T 1rvg_A 265 REALNKN--PKEFDPRKYLGPAREAVKEVVKSRM 296 (305) T ss_dssp HHHHHHC--TTCCCTHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 9999858--7767889999999999999999999 No 150 >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Probab=27.68 E-value=21 Score=13.17 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=13.3 Q ss_pred ECHHHHHHHHHHHHHHHHHCCEEEEE Q ss_conf 41477899999999998718869984 Q gi|254780869|r 232 TFSSSVSRIRSIIDIAEQIGRKIVLL 257 (559) Q Consensus 232 ~fasni~Ri~~i~~~a~~~~R~v~i~ 257 (559) +|+|=++=|..++.+..+.|..|+.. T Consensus 72 ~fsSGMAAi~~~l~~l~~~gd~vv~~ 97 (386) T 1cs1_A 72 LTNTGMSAIHLVTTVFLKPGDLLVAP 97 (386) T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEE T ss_pred EECCHHHHHHHHHHHHCCCCCEEEEC T ss_conf 83577999999998732799889961 No 151 >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, thioredoxin fold, structural genomics, PSI- 2; HET: MSE; 1.50A {Staphylococcus aureus subsp} Probab=27.56 E-value=21 Score=13.16 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=25.6 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCC----CCEEEECCCEEEE Q ss_conf 953999704577999999987874478----6315500322789 Q gi|254780869|r 384 RPQVLVAIHGEPLHLVAHKELALQEGI----ACVPPVRNGKMLR 423 (559) Q Consensus 384 kPk~~IPvHGe~rhl~~h~~la~~~gv----~~i~l~~NGd~i~ 423 (559) -|-|++=|. ++|-+-.+ +|...|| |+++++.||.++= T Consensus 55 ~~~y~ldv~-~~R~vSn~--IAe~~~V~HESPQ~ili~~G~~v~ 95 (112) T 3iv4_A 55 MDGYYLIVQ-QERDLSDY--IAKKTNVKHESPQAFYFVNGEMVW 95 (112) T ss_dssp CCEEEEEGG-GGHHHHHH--HHHHHTCCCCSSEEEEEETTEEEE T ss_pred CCEEEEEEE-ECCHHHHH--HHHHHCCCCCCCCEEEEECCEEEE T ss_conf 876999964-17657899--999959966898189998998999 No 152 >3hl3_A Glucose-1-phosphate thymidylyltransferase; IDP01254, sucrose, structural genomics, center for structural genomics of infectious diseases; HET: SUC; 2.76A {Bacillus anthracis} Probab=27.49 E-value=2.6 Score=19.73 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=7.6 Q ss_pred HHHHHHHHHHHHCCCEE Q ss_conf 77899999765103113 Q gi|254780869|r 339 EVAIGHIKNRLVEQGVR 355 (559) Q Consensus 339 E~~~~~~~n~l~~~g~~ 355 (559) ...+.++++.|...|++ T Consensus 55 kplI~~~l~~l~~~gi~ 71 (269) T 3hl3_A 55 YPMIYHAVYKLKQCDIT 71 (269) T ss_dssp EEHHHHHHHHHHTTTCC T ss_pred EEHHHHHHHHHHHCCCC T ss_conf 98899999999864995 No 153 >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* Probab=27.22 E-value=22 Score=13.12 Aligned_cols=88 Identities=20% Similarity=0.290 Sum_probs=48.9 Q ss_pred CCCCEEEEEECCCC-CC--C----CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCEEE- Q ss_conf 98863999940686-83--4----6606999951777864899977676788876750287079579876641246899- Q gi|254780869|r 1 MKNEELVFLPLGGV-GE--I----GMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIF- 72 (559) Q Consensus 1 m~~~~i~~~~lGG~-~e--i----G~N~~~~~~~~~~~~~~iiiD~G~~fp~~~~~gid~iiPd~~~l~~~~~~i~~i~- 72 (559) |++ ++-++ .||. .| | |+++ +....+..-+++++|.. +.. ...|+ ..+++.+| T Consensus 1 m~~-ki~vl-~GG~S~E~~iSl~Sg~~i--~~aL~~~g~~v~~id~~-----~~~---------~~~l~--~~~~d~vf~ 60 (306) T 1iow_A 1 MTD-KIAVL-LGGTSAEREVSLNSGAAV--LAGLREGGIDAYPVDPK-----EVD---------VTQLK--SMGFQKVFI 60 (306) T ss_dssp CCC-EEEEE-CCCSSTTHHHHHHHHHHH--HHHHHHTTCEEEEECTT-----TSC---------GGGTT--TTTEEEEEE T ss_pred CCC-CEEEE-ECCCCCCHHHHHHHHHHH--HHHHHHCCCEEEEECCC-----CCC---------HHHHH--HCCCCEEEE T ss_conf 985-09999-385873128699999999--99998869989998998-----554---------88886--448988999 Q ss_pred EECCCCCCCCCHHHHHHHCCCCEECC-HHHHHHHHHH Q ss_conf 60543012160788898629977929-9999999999 Q gi|254780869|r 73 ITHAHEDHYGALHDLWSFLHVPVYAS-PFAIGLLEAK 108 (559) Q Consensus 73 iTH~H~DHiGalp~l~~~~~~pIY~s-~~t~~li~~~ 108 (559) +.|+-..--|.++-++...++|.-++ +.+..+...| T Consensus 61 ~~hG~~~ed~~~~~~le~~~ipy~Gs~~~~~~l~~dK 97 (306) T 1iow_A 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDK 97 (306) T ss_dssp CCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHCH T ss_pred ECCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHCH T ss_conf 3468854137999999987963825888999988591 No 154 >1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A Probab=26.71 E-value=22 Score=13.05 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=20.6 Q ss_pred HHHHHHCCCEEEEECCCCCC---CCCHHHHHHHCCCCEEC Q ss_conf 87664124689960543012---16078889862997792 Q gi|254780869|r 61 IMKERKNLMAIFITHAHEDH---YGALHDLWSFLHVPVYA 97 (559) Q Consensus 61 l~~~~~~i~~i~iTH~H~DH---iGalp~l~~~~~~pIY~ 97 (559) ++++.++.+|++||||-.-= --+|.+++...+.||-- T Consensus 67 i~~~~~~~dGvVVtHGTDTl~~TA~~Ls~~~~~~~kPVVl 106 (328) T 1wls_A 67 IEKEVWEYDGIVITHGTDTMAYSASMLSFMLRNPPIPIVL 106 (328) T ss_dssp HHHHTTTCSEEEEECCGGGHHHHHHHHHHHEESCSSEEEE T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCEEE T ss_conf 9987615898899668632999999999997479998899 No 155 >2dou_A Probable N-succinyldiaminopimelate aminotransferase; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus HB8} Probab=25.86 E-value=23 Score=12.95 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=16.9 Q ss_pred HHHHHHHHHHHHHHCCEEEEE Q ss_conf 899999999998718869984 Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIVLL 257 (559) Q Consensus 237 i~Ri~~i~~~a~~~~R~v~i~ 257 (559) .++++.+++.|++.+-.|+.. T Consensus 177 ~~~l~~i~~~~~~~~~~ii~D 197 (376) T 2dou_A 177 WGYFEEALGLARKHGLWLIHD 197 (376) T ss_dssp HHHHHHHHHHHHHTTCEEEEE T ss_pred HHHHHHHHHHHHHCCEEEEEE T ss_conf 788899998876277799940 No 156 >3gjz_A Microcin immunity protein MCCF; niaid structural genomic centers for infectious diseases, csgid, immune system, structural genomics; 2.10A {Bacillus anthracis str} Probab=25.25 E-value=23 Score=12.87 Aligned_cols=46 Identities=11% Similarity=0.113 Sum_probs=22.4 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC Q ss_conf 6889885202777653026896699996158861778999997651031 Q gi|254780869|r 305 PRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQG 353 (559) Q Consensus 305 ~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGnE~~~~~~~n~l~~~g 353 (559) -.+.|..++--.+ ....+. ..+.|--.. -..-..+.|++..|...| T Consensus 213 nL~~l~~l~GTpy-~p~~~d-g~ILfLEdv-~e~~~~idR~L~qL~~aG 258 (336) T 3gjz_A 213 NLNTIQGIWGSPY-MPCIQE-GDILFIEDS-SKDAATIERSFSFLKING 258 (336) T ss_dssp EHHHHTTTTTSTT-SCCCCT-TCEEEEECC-SCBHHHHHHHHHHHHHTT T ss_pred CHHHHHHHHCCCC-CCCCCC-CCEEEEEEC-CCCCCHHHHHHHHHHHCC T ss_conf 1999987638887-876678-828999827-876539999999999759 No 157 >2f46_A Hypothetical protein; 7380613, DUF442, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.41A {Neisseria meningitidis Z2491} Probab=25.12 E-value=23 Score=12.86 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=39.7 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCC Q ss_conf 778799999999986279839999414778999999999987188699844869999998874287 Q gi|254780869|r 208 ISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGI 273 (559) Q Consensus 208 ~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~Grs~~~~~~~a~~~g~ 273 (559) +++.. ...+.+++...++.|+|-|.+- .|.-.++-+.... .|.+....+..++..|| T Consensus 86 ~~~~~-i~~~~~~l~~~~~pVlvHC~sG--~Rs~~l~a~~~~~------~g~~~e~al~~~~~~G~ 142 (156) T 2f46_A 86 IQKHD-VETFRQLIGQAEYPVLAYCRTG--TRCSLLWGFRRAA------EGMPVDEIIRRAQAAGV 142 (156) T ss_dssp CCHHH-HHHHHHHHHTSCSSEEEECSSS--HHHHHHHHHHHHH------TTCCHHHHHHHHHHTTC T ss_pred CCHHH-HHHHHHHHHCCCCCEEEECCCC--CCHHHHHHHHHHH------CCCCHHHHHHHHHHHCC T ss_conf 64899-9999999843689789881899--7199999999998------39999999999998299 No 158 >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} Probab=24.90 E-value=24 Score=12.83 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHHCCEEEEE Q ss_conf 899999999998718869984 Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIVLL 257 (559) Q Consensus 237 i~Ri~~i~~~a~~~~R~v~i~ 257 (559) .+++..++++|++.+-.|+.+ T Consensus 173 ~~~~~~l~~~~~~~~~~vi~D 193 (375) T 3op7_A 173 RTYLEELVEIASEVGAYILSD 193 (375) T ss_dssp HHHHHHHHHHHHTTTCEEEEE T ss_pred CCCCCHHHHHHCCCCEEEEEC T ss_conf 443210122110477688723 No 159 >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial precursor; middle-chain acyl-COA synthetase, xenobiotic/medium-chain fatty acid-COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Probab=24.73 E-value=24 Score=12.81 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=41.8 Q ss_pred ECCCEEEEECCC-CEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEEE--CC-CCC-EEECCEEEE-EC Q ss_conf 003227897389-7045012321320212331002550588999974038749999998--38-998-800537999-40 Q gi|254780869|r 416 VRNGKMLRLFPD-PIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLL--DN-HYN-IFGVPEIVD-IG 489 (559) Q Consensus 416 ~~NGd~i~l~~~-~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vii--d~-~~~-l~~~P~I~~-~G 489 (559) ..-||...++++ ...+.+..+- -+-+.|..+.+. + =|+..++..++.-+.++- |. .+. +..- +.. .| T Consensus 435 ~~TGDlg~~d~dG~l~i~GR~~d-~I~~~G~~v~p~-e---IE~~l~~~p~V~ea~Vvg~~d~~~ge~~~a~--Vvl~~~ 507 (570) T 3c5e_A 435 WLLGDRGIKDEDGYFQFMGRADD-IINSSGYRIGPS-E---VENALMEHPAVVETAVISSPDPVRGEVVKAF--VVLASQ 507 (570) T ss_dssp EEEEEEEEECTTSCEEEEEEGGG-CEEETTEEECHH-H---HHHHHHTSTTEEEEEEEEEEETTTEEEEEEE--EEECGG T ss_pred CCCCCEEEECCCCCEEECCCCCC-EEEECCEEECHH-H---HHHHHHHCCCCCEEEEEEEECCCCCEEEEEE--EEECCC T ss_conf 33475599979999797712378-899899999999-9---9999982998137999988878898189999--998888 Q ss_pred CEECCCCHHHHHHHHHHHHHHHH Q ss_conf 12125665889999999999999 Q gi|254780869|r 490 IPAYDGDGGKIHKLLLKTVITTV 512 (559) Q Consensus 490 l~~~~~~~~~l~~~i~~~i~~~i 512 (559) . ...+.+.+.+++.+.+...+ T Consensus 508 ~--~~~~~~~~~~~l~~~~~~~L 528 (570) T 3c5e_A 508 F--LSHDPEQLTKELQQHVKSVT 528 (570) T ss_dssp G--TTSCHHHHHHHHHHHHHHHS T ss_pred C--CCCCHHHHHHHHHHHHHHHC T ss_conf 7--88887999999999998568 No 160 >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* Probab=24.70 E-value=24 Score=12.80 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=29.6 Q ss_pred HHHHHCCEEEEE--EEECCC-----CCEEECCEEEEECCEECCCCHHHHHHHHHHHHHHH Q ss_conf 974038749999--998389-----98800537999401212566588999999999999 Q gi|254780869|r 459 RQLSFVGHLSVN--VLLDNH-----YNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITT 511 (559) Q Consensus 459 ~~Ls~~GiV~V~--viid~~-----~~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~ 511 (559) +.|...|+.+=- +..|+. |==++.|.+++||+ .+.+...+.+.+.+++... T Consensus 374 ~~Le~~gI~vNkn~iP~d~~~~~~sGiRiGT~alT~rG~--~e~dm~~iA~lI~~al~~~ 431 (483) T 1rv3_A 374 KVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGL--LEKDFQKVAHFIHRGIELT 431 (483) T ss_dssp HHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTC--CHHHHHHHHHHHHHHHHHH T ss_pred HHHHHCCCEECCCCCCCCCCCCCCCEEEECCHHHHHCCC--CHHHHHHHHHHHHHHHHHH T ss_conf 999986948787868899999999805756789984899--8899999999999999987 No 161 >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* Probab=24.67 E-value=22 Score=13.08 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=15.8 Q ss_pred CCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEE Q ss_conf 98863999940686834660699995177786489997 Q gi|254780869|r 1 MKNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMID 38 (559) Q Consensus 1 m~~~~i~~~~lGG~~eiG~N~~~~~~~~~~~~~~iiiD 38 (559) |++.+|-+ .||.|-||.+. ++...+...+.+++| T Consensus 1 m~~KkIlI--TG~tGfiG~~l--~~~L~~~g~~v~~~~ 34 (321) T 1e6u_A 1 MAKQRVFI--AGHRGMVGSAI--RRQLEQRGDVELVLR 34 (321) T ss_dssp -CCEEEEE--ETTTSHHHHHH--HHHHTTCTTEEEECC T ss_pred CCCCEEEE--ECCCCHHHHHH--HHHHHHCCCEEEEEC T ss_conf 99886999--84874899999--999997849899965 No 162 >2k9k_A TONB2; metal transport; NMR {Listonella anguillarum} Probab=24.64 E-value=24 Score=12.79 Aligned_cols=30 Identities=7% Similarity=0.055 Sum_probs=22.2 Q ss_pred HHHHHCCEEEEEEEECCCCCEEECCEE-EEEC Q ss_conf 974038749999998389988005379-9940 Q gi|254780869|r 459 RQLSFVGHLSVNVLLDNHYNIFGVPEI-VDIG 489 (559) Q Consensus 459 ~~Ls~~GiV~V~viid~~~~l~~~P~I-~~~G 489 (559) ++...+|.|.+.+.||.+|++.. ++| .+.| T Consensus 34 ~~~gieG~V~v~f~I~~~G~v~~-~~v~~ss~ 64 (106) T 2k9k_A 34 LKRGVEGFVTLSFTIDTTGKAVD-INVVDANP 64 (106) T ss_dssp HHHCCCCEEEEEEEEETTTEEEE-EEEEEESS T ss_pred HHCCCEEEEEEEEEEECCCCEEE-EEEEECCC T ss_conf 97599049999999928998988-89986479 No 163 >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} Probab=24.58 E-value=24 Score=12.79 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=25.4 Q ss_pred EECCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 00537999401212566588999999999999985220036898999999999999999 Q gi|254780869|r 480 FGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISSALRSLL 538 (559) Q Consensus 480 ~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~~~i~~~~~~~~~d~~~lk~~ir~~irk~~ 538 (559) ++.|.+++||+- +.|...+.+. +.+.+... ++....+++|+.|..++ T Consensus 360 lGT~~lT~rG~~--e~dm~~iA~l----I~~al~~~------~~~~~~~~ir~~V~~l~ 406 (417) T 3n0l_A 360 LGTPALTARGFK--EKEMEIVSNY----IADILDDV------NNEKLQENIKQELKKLA 406 (417) T ss_dssp EECHHHHHTTCC--HHHHHHHHHH----HHHHHHTT------TCHHHHHHHHHHHHHHH T ss_pred ECCHHHHHCCCC--HHHHHHHHHH----HHHHHHCC------CCHHHHHHHHHHHHHHH T ss_conf 577899857998--8999999999----99999646------85789999999999999 No 164 >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A Probab=24.48 E-value=12 Score=14.92 Aligned_cols=24 Identities=8% Similarity=0.199 Sum_probs=14.8 Q ss_pred CHHHHHHHHHHHHHHHHHCCEEEE Q ss_conf 147789999999999871886998 Q gi|254780869|r 233 FSSSVSRIRSIIDIAEQIGRKIVL 256 (559) Q Consensus 233 fasni~Ri~~i~~~a~~~~R~v~i 256 (559) ++.+++-...++++|++.++.+.+ T Consensus 98 la~~~~ea~~l~~~a~~~~~~~~v 121 (358) T 3gdo_A 98 MTATAEEGETLKRAADEKGVLLSV 121 (358) T ss_dssp CCSSHHHHHHHHHHHHHHTCCEEE T ss_pred EHHHHHHHHHHHHHHHHCCEEEEE T ss_conf 001036789999987624515654 No 165 >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics, NPPSFA; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Probab=24.03 E-value=24 Score=12.72 Aligned_cols=53 Identities=11% Similarity=0.292 Sum_probs=27.7 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECHHH----HHHHHHHHHHHHHHCCEEEEEC Q ss_conf 7777879999999998627983999941477----8999999999987188699844 Q gi|254780869|r 206 TCISEKGIKKNIYDIMKNAKGCVLVTTFSSS----VSRIRSIIDIAEQIGRKIVLLG 258 (559) Q Consensus 206 ~~~sE~~v~~~i~~~~~~~~grViv~~fasn----i~Ri~~i~~~a~~~~R~v~i~G 258 (559) ...+...+++.+.+.-+..+-..++.+..+| +.-+.+|.++|+++|-.+++++ T Consensus 128 ~~i~~~~l~~~i~~~~~~~~~~lv~~~~~~~~~G~~~~~~~i~~~~~~~~~~~~~D~ 184 (371) T 2e7j_A 128 YAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNG 184 (371) T ss_dssp CCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEEC T ss_pred CCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHCCCEEEEEEEC T ss_conf 776999999998754345880899996788998254447755666425427999944 No 166 >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Probab=23.92 E-value=25 Score=12.70 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=15.4 Q ss_pred EECHHHHHHHHHHHHHHHHHCCEEEEE Q ss_conf 941477899999999998718869984 Q gi|254780869|r 231 TTFSSSVSRIRSIIDIAEQIGRKIVLL 257 (559) Q Consensus 231 ~~fasni~Ri~~i~~~a~~~~R~v~i~ 257 (559) -+|+|=+.=|...+....+.|-.|+.. T Consensus 100 ~~~sSGmaAI~~~l~~l~~~Gd~iv~~ 126 (414) T 3ndn_A 100 FATASGMAAVFTSLGALLGAGDRLVAA 126 (414) T ss_dssp EEESSHHHHHHHHHHTTCCTTCEEEEE T ss_pred EEECCHHHHHHHHHHHHCCCCCEEEEE T ss_conf 994589999999999860689989982 No 167 >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Probab=23.30 E-value=15 Score=14.25 Aligned_cols=13 Identities=23% Similarity=0.117 Sum_probs=6.4 Q ss_pred HHHHHHHCCEEEE Q ss_conf 9997403874999 Q gi|254780869|r 457 KRRQLSFVGHLSV 469 (559) Q Consensus 457 eR~~Ls~~GiV~V 469 (559) .|......|+++| T Consensus 398 ~~~~~~~~g~~v~ 410 (420) T 3brk_X 398 KRFRRTESGICLI 410 (420) T ss_dssp HHSEECTTSCEEE T ss_pred CEEEECCCCEEEE T ss_conf 5117847814997 No 168 >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Probab=22.98 E-value=26 Score=12.58 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=5.5 Q ss_pred EEEEECCCCCH Q ss_conf 99996696326 Q gi|254780869|r 295 IVIATGSQGEP 305 (559) Q Consensus 295 ~ii~TGsqge~ 305 (559) ++.++||=|.| T Consensus 267 ilyTSGTTG~P 277 (663) T 1ry2_A 267 LLYTSGSTGAP 277 (663) T ss_dssp EEEECCSSSSC T ss_pred EEECCCCCCCC T ss_conf 99689888899 No 169 >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Probab=22.91 E-value=26 Score=12.57 Aligned_cols=10 Identities=20% Similarity=0.544 Sum_probs=3.5 Q ss_pred CEEEEEECCC Q ss_conf 0899996696 Q gi|254780869|r 293 QLIVIATGSQ 302 (559) Q Consensus 293 ~~~ii~TGsq 302 (559) ++.++.++.. T Consensus 96 ~i~~~~~~~~ 105 (259) T 1tzf_A 96 NVTLVDTGDS 105 (259) T ss_dssp EEEEEECCSS T ss_pred CEEEEECCCC T ss_conf 2379954753 No 170 >1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Probab=22.48 E-value=26 Score=12.51 Aligned_cols=142 Identities=14% Similarity=0.133 Sum_probs=58.2 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHC-CEEEEEC-----HHHHHHHHHHHHCC-CC-C- Q ss_conf 87777879999999998627983999941477899999999998718-8699844-----86999999887428-76-7- Q gi|254780869|r 205 GTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIG-RKIVLLG-----SSLKRVVSVAIDVG-II-K- 275 (559) Q Consensus 205 ~~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~-R~v~i~G-----rs~~~~~~~a~~~g-~l-~- 275 (559) -+..+|.+.+.-- ...+.+=-.+..+|.++-+=+..+-+..++.+ .++-+.. .++.+.-++..... .+ . T Consensus 167 ~~~ltekD~~~i~--~~~~~~vd~i~lSfV~~~~dv~~~r~~l~~~~~~~~~iiaKIE~~~al~nl~eI~~~sDgimiaR 244 (470) T 1e0t_A 167 LPALAEKDKQDLI--FGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVAR 244 (470) T ss_dssp CCSSCHHHHHHHH--HHHHHTCSEEEESSCCSHHHHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHHHHSSEEEEEH T ss_pred CCCCCHHHHHHHH--HHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEC T ss_conf 6446387899886--11015976441035686678888876677615766347988526999987999997575789965 Q ss_pred -CCCCCCCHHHHCCC---------CCCCEEEEEECCCC-------CHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCH Q ss_conf -76542265662238---------80208999966963-------26889885202777653026896699996158861 Q gi|254780869|r 276 -KDQLFLSDESFGLY---------PREQLIVIATGSQG-------EPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGN 338 (559) Q Consensus 276 -~~~~~i~~~~~~~~---------p~~~~~ii~TGsqg-------e~~a~l~ria~~~~~~i~l~~~D~vI~ss~~ipGn 338 (559) +...-++.+++... ...+-+|++|---. -.+|-.+-+++ .-+.--|.+.+|..+..|+ T Consensus 245 GDLg~e~~~e~vp~~Qk~Ii~~~~~~~kpvi~ATq~LeSM~~~~~PTRAEv~Dv~n-----av~dGad~vmLs~ETa~G~ 319 (470) T 1e0t_A 245 GDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATMMLDSMIKNPRPTDAEAGDVAN-----AILDGTDAVMLSGESAKGK 319 (470) T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHTCEEEEECC---------CCCHHHHHHHHH-----HHHHTCSEEEECCC----- T ss_pred CCCHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHH-----HHHHCCCEEEECCCCCCCC T ss_conf 66010089888789999999999865998898167788763189986345788999-----9981676687736645775 Q ss_pred HH-HHHHHHHHHHCCC Q ss_conf 77-8999997651031 Q gi|254780869|r 339 EV-AIGHIKNRLVEQG 353 (559) Q Consensus 339 E~-~~~~~~n~l~~~g 353 (559) .. ..-++++.+.+.- T Consensus 320 ~P~~~v~~~~~i~~~a 335 (470) T 1e0t_A 320 YPLEAVSIMATICERT 335 (470) T ss_dssp -CHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHH T ss_conf 7889999999999998 No 171 >3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3e0w_A 3e0v_A Probab=22.25 E-value=26 Score=12.48 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=21.5 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEE Q ss_conf 7777879999999998627983999941477899999999998718869984 Q gi|254780869|r 206 TCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL 257 (559) Q Consensus 206 ~~~sE~~v~~~i~~~~~~~~grViv~~fasni~Ri~~i~~~a~~~~R~v~i~ 257 (559) ++.+|.+..+- .-.. +.+=-.+..+|.++-+=+..+-++..+.|+.+-+. T Consensus 188 p~ltekD~~di-~~a~-~~~vD~valSFVrs~~dv~~lr~~l~~~~~~~~ii 237 (499) T 3hqn_D 188 PAVSAKDRVDL-QFGV-EQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMII 237 (499) T ss_dssp CSSCHHHHHHH-HHHH-HTTCSEEEETTCCSHHHHHHHHHHHCGGGTTSEEE T ss_pred CCCCHHHHHHH-HHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEE T ss_conf 44551019999-9999-61899899668898789999999999719986699 No 172 >1e4e_A Vancomycin/teicoplanin A-type resistance protein VANA; ligase, cell WALL, antibiotic resistance, membrane, plasmid; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Probab=22.01 E-value=27 Score=12.45 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=33.9 Q ss_pred HCCCEEEEE-CCCCCCCCCHHHHHHHCCCCEECC-HHHHHHHHHHH Q ss_conf 124689960-543012160788898629977929-99999999999 Q gi|254780869|r 66 KNLMAIFIT-HAHEDHYGALHDLWSFLHVPVYAS-PFAIGLLEAKR 109 (559) Q Consensus 66 ~~i~~i~iT-H~H~DHiGalp~l~~~~~~pIY~s-~~t~~li~~~~ 109 (559) .+++.+|.. ||-.---|.++.++..+++|--++ ..+.++...|. T Consensus 89 ~~~D~vf~~lhG~~GEdg~iq~~le~~gipy~Gs~~~~s~l~~DK~ 134 (343) T 1e4e_A 89 NHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKS 134 (343) T ss_dssp EECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHSHH T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCH T ss_conf 5677899887787754609999999869986168579999864706 No 173 >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} Probab=21.83 E-value=27 Score=12.42 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=8.4 Q ss_pred HHHHHHHHHHHHHHHHHCCE Q ss_conf 47789999999999871886 Q gi|254780869|r 234 SSSVSRIRSIIDIAEQIGRK 253 (559) Q Consensus 234 asni~Ri~~i~~~a~~~~R~ 253 (559) +.++.-.++++++|+++|+. T Consensus 117 a~~~~e~~~l~~~a~~~g~~ 136 (383) T 3oqb_A 117 ATNFEEALEVVKLANSKGVK 136 (383) T ss_dssp CSSHHHHHHHHHHHHHTTCC T ss_pred CCHHHHHHHHHHHHHCCCCE T ss_conf 33299998865466505966 No 174 >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} Probab=21.36 E-value=25 Score=12.67 Aligned_cols=14 Identities=29% Similarity=0.518 Sum_probs=7.2 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 99999999999828 Q gi|254780869|r 530 ISSALRSLLKKVWG 543 (559) Q Consensus 530 ir~~irk~~~k~~~ 543 (559) ++..+|+++-++.| T Consensus 284 ~~~~~~~~~~~~~~ 297 (297) T 2ux8_A 284 LEPAVRAFAVKALG 297 (297) T ss_dssp THHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHCC T ss_conf 63999999998639 No 175 >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Probab=21.33 E-value=27 Score=12.35 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=15.7 Q ss_pred HHHHHHHHHHHHHHCCEEEEE Q ss_conf 899999999998718869984 Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIVLL 257 (559) Q Consensus 237 i~Ri~~i~~~a~~~~R~v~i~ 257 (559) -++++++++.|++.+--|+.+ T Consensus 196 ~e~~~~l~~~~~~~~~~ii~D 216 (416) T 1bw0_A 196 RKHVEDIVRLAEELRLPLFSD 216 (416) T ss_dssp HHHHHHHHHHHHHHTCCEEEE T ss_pred HHHHHHHHHHHHHCCEEEEEE T ss_conf 678999876776448269830 No 176 >3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae} Probab=21.07 E-value=28 Score=12.32 Aligned_cols=41 Identities=17% Similarity=0.473 Sum_probs=30.2 Q ss_pred EECHHHHHHHHHHHHHHHHHCC-EEEE--ECHHHHHHHHHHHHC Q ss_conf 9414778999999999987188-6998--448699999988742 Q gi|254780869|r 231 TTFSSSVSRIRSIIDIAEQIGR-KIVL--LGSSLKRVVSVAIDV 271 (559) Q Consensus 231 ~~fasni~Ri~~i~~~a~~~~R-~v~i--~Grs~~~~~~~a~~~ 271 (559) +.|.|-+-|++.+++.+.+.+. .|++ +|++..+.+.+|... T Consensus 39 Tpf~s~vKR~~KlL~~~~~~~~~eV~v~gmG~AI~kal~la~~f 82 (140) T 3iab_B 39 TPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHF 82 (140) T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH T ss_conf 85799999999999887525873899983137899999999985 No 177 >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence of substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Probab=21.02 E-value=28 Score=12.31 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=17.3 Q ss_pred HHHHHHHHHHHHHHCCEEEEE Q ss_conf 899999999998718869984 Q gi|254780869|r 237 VSRIRSIIDIAEQIGRKIVLL 257 (559) Q Consensus 237 i~Ri~~i~~~a~~~~R~v~i~ 257 (559) .++++++++.|++.+-.|+.+ T Consensus 179 ~~~~~~l~~~a~~~~~~ii~D 199 (389) T 1gd9_A 179 KKDLEEIADFVVEHDLIVISD 199 (389) T ss_dssp HHHHHHHHHHHHHTTCEEEEE T ss_pred HHHHHHHHHHHHHCCCEEEEE T ss_conf 999999999999869599995 No 178 >3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, transcription-coupled DNA repair, ATP-binding, DNA damage, DNA repair; 1.95A {Escherichia coli} PDB: 2b2n_A* Probab=20.98 E-value=28 Score=12.30 Aligned_cols=101 Identities=6% Similarity=-0.013 Sum_probs=43.9 Q ss_pred CCCCCCCCCEEEECCCHHHHHHHH-------HCCCEEEEECCCC--CCCCCHHHHHHHCCCCEECC-HHHHHHHHHHHHH Q ss_conf 678887675028707957987664-------1246899605430--12160788898629977929-9999999999985 Q gi|254780869|r 42 SFPKDDLPGVDLVFPDITFIMKER-------KNLMAIFITHAHE--DHYGALHDLWSFLHVPVYAS-PFAIGLLEAKRVY 111 (559) Q Consensus 42 ~fp~~~~~gid~iiPd~~~l~~~~-------~~i~~i~iTH~H~--DHiGalp~l~~~~~~pIY~s-~~t~~li~~~~~~ 111 (559) .||..+.+-.|...|+-+-+.++. .+=.+|+||++.. -.+-.-. .+......+-.+ .....-+..+|.. T Consensus 69 ~~P~~e~lpye~~~~~~~~~~~R~~~L~~L~~~~~~iivtt~~al~~~~~~~~-~~~~~~~~l~~G~~~~~~~l~~~L~~ 147 (483) T 3hjh_A 69 NLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS-FLHGHALVMKKGQRLSRDALRTQLDS 147 (483) T ss_dssp ECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHBCCCCHH-HHHHTCEEEETTCCCCHHHHHHHHHH T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHCCCCCHH-HHHHCCEEEECCCEECHHHHHHHHHH T ss_conf 66754457766679856999999999998634899856966677418899899-99717578726989558999999999 Q ss_pred CCCCCCCCEEEECCCCEEEECCEEEEEEECCCCCC Q ss_conf 48865562255175555776348999985567777 Q gi|254780869|r 112 ERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIP 146 (559) Q Consensus 112 ~~~~~~~~~~~i~~~~~~~~g~~~v~~~~~~Hsip 146 (559) .+..... .+...-.+.+-+--|..||.++.-| T Consensus 148 ~GY~r~~---~Ve~~GefsvRGgIiDIfp~~~~~P 179 (483) T 3hjh_A 148 AGYRHVD---QVMEHGEYATRGALLDLFPMGSELP 179 (483) T ss_dssp TTCEECS---SCCSTTEEEEETTEEEECCBTCSSC T ss_pred HCCCCCC---EECCCCEEEEECCEEEECCCCCCCC T ss_conf 5895533---3304756998789758743667963 No 179 >4eug_A UDG, UNG, protein (glycosylase); hydrolase; 1.40A {Escherichia coli B} SCOP: c.18.1.1 PDB: 5eug_A 1eug_A 2uug_A 3eug_A 2eug_A 1uug_A 1lqj_A 1lqm_A 1lqg_A 1flz_A 1eui_A 2jhq_A Probab=20.60 E-value=28 Score=12.25 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=23.0 Q ss_pred HHHCCCCCCEEEEECCCCCCCCCCCCCHH-----HHHHHHHHHHHHCCCCEEEEECHHHH Q ss_conf 98608788299996356457888777787-----99999999986279839999414778 Q gi|254780869|r 183 LCAIGNEGILALMCDSTNAMREGTCISEK-----GIKKNIYDIMKNAKGCVLVTTFSSSV 237 (559) Q Consensus 183 l~~~~~~gv~~Li~esT~~~~~~~~~sE~-----~v~~~i~~~~~~~~grViv~~fasni 237 (559) |..++++||++|=+-=| -+.|.+.|.+ .+.+.+.+.+.+.+..|++-...++. T Consensus 111 L~~Wa~QGVLLLNt~LT--v~~g~~~SH~~~gWe~ft~~ii~~l~~~~~~vVf~LWG~~A 168 (229) T 4eug_A 111 LESWARQGVLLLNTVLT--VRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHA 168 (229) T ss_dssp CHHHHTTTEEEEESSCC--EETTBTTTTTTSSHHHHHHHHHHHHHHHCSSCEEEEESHHH T ss_pred CCHHHHCCEEEEECEEE--EECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHH T ss_conf 64375398799723388--87778888778787999999999998468984999967688 No 180 >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.3A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Probab=20.43 E-value=29 Score=12.22 Aligned_cols=19 Identities=5% Similarity=0.092 Sum_probs=8.9 Q ss_pred EEEEECHHHHHHHHHHHHH Q ss_conf 9999414778999999999 Q gi|254780869|r 228 VLVTTFSSSVSRIRSIIDI 246 (559) Q Consensus 228 Viv~~fasni~Ri~~i~~~ 246 (559) +.+..-..-.+|++.++++ T Consensus 142 iMvGG~~~~~e~v~pil~~ 160 (474) T 2iz1_A 142 MMPGGQKEAYDLVAPIFEQ 160 (474) T ss_dssp EEEEECHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHH T ss_conf 1017739999999999999 No 181 >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} SCOP: c.67.1.4 PDB: 3ou5_A Probab=20.43 E-value=10 Score=15.43 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=27.7 Q ss_pred HHHHHCCEEEEEEE--ECCCC-----CEEECCEEEEECCEECCCCHHHHHHHHHHHHH Q ss_conf 97403874999999--83899-----88005379994012125665889999999999 Q gi|254780869|r 459 RQLSFVGHLSVNVL--LDNHY-----NIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVI 509 (559) Q Consensus 459 ~~Ls~~GiV~V~vi--id~~~-----~l~~~P~I~~~Gl~~~~~~~~~l~~~i~~~i~ 509 (559) +.|...|+.+=--. .|+.. ==++.|.+++||+- +.+...+.+.+.+.+. T Consensus 384 ~~Le~~gI~vNkn~iP~D~~~~~~sGiRiGT~aiTtrG~~--e~dm~~iA~lI~~~l~ 439 (490) T 2a7v_A 384 RVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFR--EDDFRRVVDFIDEGVN 439 (490) T ss_dssp HHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCC--HHHHHHHHHHHHHHHH T ss_pred HHHHHCCEEECCCCCCCCCCCCCCCCEEECCHHHHHCCCC--HHHHHHHHHHHHHHHH T ss_conf 9999869076877478999999998147677899858998--8999999999999998 No 182 >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 1ars_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* 1cq7_A* ... Probab=20.16 E-value=29 Score=12.19 Aligned_cols=31 Identities=10% Similarity=0.168 Sum_probs=19.4 Q ss_pred CEEEEECHHH-------HHHHHHHHHHHHHHCCEEEEE Q ss_conf 3999941477-------899999999998718869984 Q gi|254780869|r 227 CVLVTTFSSS-------VSRIRSIIDIAEQIGRKIVLL 257 (559) Q Consensus 227 rViv~~fasn-------i~Ri~~i~~~a~~~~R~v~i~ 257 (559) ++++-+..+| -+++++++++|++++--|+.+ T Consensus 174 ~~ii~~~P~NPTG~v~s~e~l~~l~~~a~~~~~~ii~D 211 (396) T 2q7w_A 174 VVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFD 211 (396) T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE T ss_conf 89996899888786879999999999986367439988 No 183 >3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A Probab=20.13 E-value=29 Score=12.18 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=9.2 Q ss_pred EEEECC-CCCCCCCHHHH Q ss_conf 996054-30121607888 Q gi|254780869|r 71 IFITHA-HEDHYGALHDL 87 (559) Q Consensus 71 i~iTH~-H~DHiGalp~l 87 (559) +=.+|+ |++|.--+.++ T Consensus 67 iN~SHg~~e~~~~~i~~i 84 (511) T 3gg8_A 67 LNFSHGDHETHARTVQNI 84 (511) T ss_dssp EETTSSCHHHHHHHHHHH T ss_pred EECCCCCHHHHHHHHHHH T ss_conf 988999999999999999 No 184 >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Probab=20.09 E-value=29 Score=12.17 Aligned_cols=52 Identities=12% Similarity=0.117 Sum_probs=25.5 Q ss_pred ECCCEEEEECC-CCEEEEEEEECCCEEECCCCEECCCCHHHHHHHHHHHCCEEEEEEE Q ss_conf 00322789738-9704501232132021233100255058899997403874999999 Q gi|254780869|r 416 VRNGKMLRLFP-DPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVL 472 (559) Q Consensus 416 ~~NGd~i~l~~-~~~~i~~~v~~g~~~vDG~~i~~~~~~vl~eR~~Ls~~GiV~V~vi 472 (559) ...||...+.+ +.+.+.++.+- -+-+.|..+.. . -=|....+..++.-+.++ T Consensus 408 ~~tgd~~~~~~~G~l~~~GR~~d-~i~~~G~~i~~-~---~IE~~l~~~~~V~~~~v~ 460 (529) T 2v7b_A 408 IRSGDKYCRLPNGCYVYAGRSDD-MLKVSGQYVSP-V---EVEMVLVQHDAVLEAAVV 460 (529) T ss_dssp EEEEEEEEECTTSCEEEEEEGGG-CBC----CBCH-H---HHHHHHTTSTTEEEEEEE T ss_pred CCCCCCCCCCCCCCEEECCCCCC-EEEECCEEECH-H---HHHHHHHHCCCCCEEEEE T ss_conf 22477422123551898543436-79989999988-9---999999729980489999 Done!