PSIBLAST alignment of GI: 254780869 and protein with PDB id: 3af5

gi|294979445|pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404 From Pyrococcus Horikoshii Length = 651
>gi|294979446|pdb|3AF6|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404 From Pyrococcus Horikoshii Complexed With Rna-Analog Length = 651
 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 81/475 (17%), Positives = 165/475 (34%), Gaps = 80/475 (16%)

Query: 2   KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSF-----PKDDLPGVDLVFP 56
           K+  +    LGG  E+G +  L      +   ++++D GV+      P    P  D   P
Sbjct: 185 KSRWIRITGLGGFREVGRSALLV----QTDESFVLVDFGVNVAMLNDPYKAFPHFDA--P 238

Query: 57  DITFIMKERKNLMAIFITHAHEDHYGALHDLWSF--LHVPVYASPFA---IGLLEAKRVY 111
           +  +++     L AI ITHAH DH G L  L+ +     P+Y +P     + LL+   + 
Sbjct: 239 EFQYVL-REGLLDAIIITHAHLDHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIE 297

Query: 112 ERVSKKI--------------PCISFQAGDKVDVGA-FSIESVRVNHSIPETMAL-VIRS 155
            + S                   I+   G+  D+     +      H +   +    I +
Sbjct: 298 IQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGN 357

Query: 156 PVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKK 215
            + NI  TGD+K     +L           +       L+ +ST        +  +  +K
Sbjct: 358 GLHNIAITGDFKFIPTRLLEPAN--AKFPRL-----ETLVMESTYGGANDIQMPREEAEK 410

Query: 216 NIYDIMKNA---KGCVLVTTFSSSVSRIRSIIDIAEQI----GRKIVLLGSSLK---RVV 265
            + +++ N     G VL+   +  V R + ++ + E+     G ++ +    +      +
Sbjct: 411 RLIEVIHNTIKRGGKVLIPAMA--VGRAQEVMMVLEEYARIGGIEVPIYLDGMIWEATAI 468

Query: 266 SVAIDVGIIKKDQLFLSDESFGLY----------PREQLIVIATGSQGEPRSALAQLSRG 315
             A    + ++ +  +  E +  +           RE+  +I +       ++   L  G
Sbjct: 469 HTAYPEYLSRRLREQIFKEGYNPFLSEIFHPVANSRERQDIIDSNEPAIIIASSGMLVGG 528

Query: 316 ----EMRNVKLAEKDTVIFSSRAIPGN-------EVAIGHIKNRLVEQGVRVIAEDAECP 364
                 + +    K+++IF S    G         +    +        V  +  +    
Sbjct: 529 PSVEYFKQLAPDPKNSIIFVSYQAEGTLGRQVQSGIREIPMVGEEGRTEVIKVNMEVHTI 588

Query: 365 VHVSGHPYPNDLKRMYQWIRPQ--VLVAIHGEPLHL-----VAHKELALQEGIAC 412
              SGH    +L      +RP+   ++ +HGEP          H++  +      
Sbjct: 589 DGFSGHADRRELMNYVAKVRPRPERIITVHGEPQKCLDLATSIHRKFGISTRAPN 643