PSIBLAST alignment of GI: 254780869 and protein with PDB id: 3bk1
>gi|166007339|pdb|3BK1|A Chain A, Crystal Structure Analysis Of Rnase J Length = 562
>gi|166007340|pdb|3BK2|A Chain A, Crystal Structure Analysis Of The Rnase JUMP COMPLEX Length = 562
Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats.
Identities = 175/561 (31%), Positives = 278/561 (49%), Gaps = 22/561 (3%)
Query: 3 NEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIM 62
+ + +PLGG GEIG N+ ++ + + ++D G++FP++ PGVDL+ P + +++
Sbjct: 14 QDHVEIIPLGGXGEIGKNITVFRF----RDEIFVLDGGLAFPEEGXPGVDLLIPRVDYLI 69
Query: 63 KERKNLMAIFITHAHEDHYGALHDLWSFL-----HVPVYASPFAIGLLEAKRVYERVSKK 117
+ R + A +TH HEDH G L L + VP+Y + +GLL K +
Sbjct: 70 EHRHKIKAWVLTHGHEDHIGGLPFLLPXIFGKESPVPIYGARLTLGLLRGKLEEFGLRPG 129
Query: 118 IPC-ISFQAGDKVDVG-AFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILG 175
D++ VG F+++ R HSIP+ +VIR+P+G IVHTGD+KLD I G
Sbjct: 130 AFNLKEISPDDRIQVGRYFTLDLFRXTHSIPDNSGVVIRTPIGTIVHTGDFKLDPTPIDG 189
Query: 176 DVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSS 235
V+ + G EG+L L+ D+TNA R G SE I K + ++ A G V VTTF+S
Sbjct: 190 KVSHLAKVAQAGAEGVLLLIADATNAERPGYTPSEXEIAKELDRVIGRAPGRVFVTTFAS 249
Query: 236 SVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQLI 295
+ RI+S+I AE+ GRK+ G S + +A+++G +K + E P Q++
Sbjct: 250 HIHRIQSVIWAAEKYGRKVAXEGRSXLKFSRIALELGYLKVKDRLYTLEEVKDLPDHQVL 309
Query: 296 VIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVR 355
++ATGSQG+P S L +L+ + DTVI SS IPGNE A+ + NRL G
Sbjct: 310 ILATGSQGQPXSVLHRLAFEGHAKXAIKPGDTVILSSSPIPGNEEAVNRVINRLYALGAY 369
Query: 356 VIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIAC--V 413
V+ VH SGH +LK + P+ + HGE H K LA
Sbjct: 370 VLY-PPTYKVHASGHASQEELKLILNLTTPRFFLPWHGEVRHQXNFKWLAESXSRPPEKT 428
Query: 414 PPVRNGKMLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLL 473
NG + RL + E + EV HG+ DG +G + +A RR + G + + L
Sbjct: 429 LIGENGAVYRLTRETFEKVGEVPHGVLYVDGLGVGDITEEILADRRHXAEEGLVVITALA 488
Query: 474 DNHYNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISSA 533
V E+V G G ++ + + + + + + ++ L+ +R+ I
Sbjct: 489 GED----PVVEVVSRGFV---KAGERLLGEVRRXALEALKNGVREKKP-LERIRDDIYYP 540
Query: 534 LRSLLKKVWGKKPLVTVFINK 554
++ LKK G+ P + + +
Sbjct: 541 VKKFLKKATGRDPXILPVVIE 561