RPSBLAST alignment of GI: 254780869 and protein with PDBid: 2xr1

>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640
 Score =  215 bits (548), Expect = 2e-56
 Identities = 76/473 (16%), Positives = 152/473 (32%), Gaps = 63/473 (13%)

Query: 2   KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFI 61
           K++ +    LGG  E+G +  L           I+IDCGV+   D+     L  P++  +
Sbjct: 180 KDQWVRVTALGGCKEVGRSCFLLSTPE----SRILIDCGVNVGSDENMTPYLYVPEVFPL 235

Query: 62  MKERKNLMAIFITHAHEDHYGALHDLWS-FLHVPVYASPFAIGLLEAK-----RVYERVS 115
                 + A+ +THAH DH G +  L+      PVY +P    L+         V  +  
Sbjct: 236 ----NQIDAVIVTHAHLDHQGLVPLLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEG 291

Query: 116 KKIP------------CISFQAGDKVDVG-AFSIESVRVNHSIPETMALV-IRSPVGNIV 161
           KKIP             I     +  D+     +      H +   ++   I   + N+V
Sbjct: 292 KKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVV 351

Query: 162 HTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIM 221
            TGD+K +   +     +K          I      + NA +     +EK ++  + + +
Sbjct: 352 FTGDYKYEKTRLFDPAVNK---FPRVETVISEATYGNANAFQPALKDAEKHLQMVVKNTI 408

Query: 222 KNAKGCVLVTTFSSSVSRIRSIIDIAEQIGR----KIVLLGSSLKRVVSVAIDVGIIKKD 277
           +     V+          +  +++ + + G      + L G   +     A     +  D
Sbjct: 409 ERGGIAVIPAFAVGRSQEVMIVLEESIRKGLIPEVPVYLDGMIWEATAIHATHPEYLNND 468

Query: 278 -QLFLSDESFGLYPREQLIVIATGSQGE--------------PRSALAQLSRGEMRNVKL 322
            +  +  +    +  E    + +    +                           +    
Sbjct: 469 LRKLIFQKGQNPFLSECFKPVDSHEARQKIIQNPQPCVILATSGMMNGGPVMEYFKAFAE 528

Query: 323 AEKDTVIFSSRAIPGNEVA--------IGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPN 374
             ++T++F      G            I         + +++  E  +     SGH    
Sbjct: 529 DPRNTLVFVGYQADGTIGRRIQKGWKEIPMTGKNGSTEMLKMNME-VQVVDGFSGHSDRR 587

Query: 375 DLKRMYQWI--RPQVLVAIHGEPLHLVAHKE-LALQEGIACVPPVRNGKMLRL 424
            L    + +  RP+ +   HG+    V     +  +  I       N + +RL
Sbjct: 588 QLMEYVKRMQPRPERVFTEHGDEKACVDLASSVYKKLKIETRAL-TNLETVRL 639