RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] (559 letters) >3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* Length = 562 Score = 357 bits (916), Expect = 4e-99 Identities = 175/560 (31%), Positives = 286/560 (51%), Gaps = 22/560 (3%) Query: 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFI 61 + + +PLGG+GEIG N+ ++ + + ++D G++FP++ +PGVDL+ P + ++ Sbjct: 13 PQDHVEIIPLGGMGEIGKNITVFRFR----DEIFVLDGGLAFPEEGMPGVDLLIPRVDYL 68 Query: 62 MKERKNLMAIFITHAHEDHYGALHDLWSFLH-----VPVYASPFAIGLLEAKRVYERVSK 116 ++ R + A +TH HEDH G L L + VP+Y + +GLL K + Sbjct: 69 IEHRHKIKAWVLTHGHEDHIGGLPFLLPMIFGKESPVPIYGARLTLGLLRGKLEEFGLRP 128 Query: 117 K-IPCISFQAGDKVDVGA-FSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAIL 174 D++ VG F+++ R+ HSIP+ +VIR+P+G IVHTGD+KLD I Sbjct: 129 GAFNLKEISPDDRIQVGRYFTLDLFRMTHSIPDNSGVVIRTPIGTIVHTGDFKLDPTPID 188 Query: 175 GDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFS 234 G V+ + G EG+L L+ D+TNA R G SE I K + ++ A G V VTTF+ Sbjct: 189 GKVSHLAKVAQAGAEGVLLLIADATNAERPGYTPSEMEIAKELDRVIGRAPGRVFVTTFA 248 Query: 235 SSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQL 294 S + RI+S+I AE+ GRK+ + G S+ + +A+++G +K + E P Q+ Sbjct: 249 SHIHRIQSVIWAAEKYGRKVAMEGRSMLKFSRIALELGYLKVKDRLYTLEEVKDLPDHQV 308 Query: 295 IVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGV 354 +++ATGSQG+P S L +L+ + + DTVI SS IPGNE A+ + NRL G Sbjct: 309 LILATGSQGQPMSVLHRLAFEGHAKMAIKPGDTVILSSSPIPGNEEAVNRVINRLYALGA 368 Query: 355 RVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIACVP 414 V+ H SGH +LK + P+ + HGE H + K LA Sbjct: 369 YVLYPPTYKV-HASGHASQEELKLILNLTTPRFFLPWHGEVRHQMNFKWLAESMSRPPEK 427 Query: 415 PV--RNGKMLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVL 472 + NG + RL + E + EV HG+ DG +G + +A RR ++ G + + L Sbjct: 428 TLIGENGAVYRLTRETFEKVGEVPHGVLYVDGLGVGDITEEILADRRHMAEEGLVVITAL 487 Query: 473 LDNHYNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISS 532 V E+V G G ++ + + + + + + +K L+ +R+ I Sbjct: 488 AGED----PVVEVVSRGFVK---AGERLLGEVRRMALEALKNGVR-EKKPLERIRDDIYY 539 Query: 533 ALRSLLKKVWGKKPLVTVFI 552 ++ LKK G+ P++ + Sbjct: 540 PVKKFLKKATGRDPMILPVV 559 >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640 Score = 215 bits (548), Expect = 2e-56 Identities = 76/473 (16%), Positives = 152/473 (32%), Gaps = 63/473 (13%) Query: 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFI 61 K++ + LGG E+G + L I+IDCGV+ D+ L P++ + Sbjct: 180 KDQWVRVTALGGCKEVGRSCFLLSTPE----SRILIDCGVNVGSDENMTPYLYVPEVFPL 235 Query: 62 MKERKNLMAIFITHAHEDHYGALHDLWS-FLHVPVYASPFAIGLLEAK-----RVYERVS 115 + A+ +THAH DH G + L+ PVY +P L+ V + Sbjct: 236 ----NQIDAVIVTHAHLDHQGLVPLLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEG 291 Query: 116 KKIP------------CISFQAGDKVDVG-AFSIESVRVNHSIPETMALV-IRSPVGNIV 161 KKIP I + D+ + H + ++ I + N+V Sbjct: 292 KKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVV 351 Query: 162 HTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIM 221 TGD+K + + +K I + NA + +EK ++ + + + Sbjct: 352 FTGDYKYEKTRLFDPAVNK---FPRVETVISEATYGNANAFQPALKDAEKHLQMVVKNTI 408 Query: 222 KNAKGCVLVTTFSSSVSRIRSIIDIAEQIGR----KIVLLGSSLKRVVSVAIDVGIIKKD 277 + V+ + +++ + + G + L G + A + D Sbjct: 409 ERGGIAVIPAFAVGRSQEVMIVLEESIRKGLIPEVPVYLDGMIWEATAIHATHPEYLNND 468 Query: 278 -QLFLSDESFGLYPREQLIVIATGSQGE--------------PRSALAQLSRGEMRNVKL 322 + + + + E + + + + Sbjct: 469 LRKLIFQKGQNPFLSECFKPVDSHEARQKIIQNPQPCVILATSGMMNGGPVMEYFKAFAE 528 Query: 323 AEKDTVIFSSRAIPGNEVA--------IGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPN 374 ++T++F G I + +++ E + SGH Sbjct: 529 DPRNTLVFVGYQADGTIGRRIQKGWKEIPMTGKNGSTEMLKMNME-VQVVDGFSGHSDRR 587 Query: 375 DLKRMYQWI--RPQVLVAIHGEPLHLVAHKE-LALQEGIACVPPVRNGKMLRL 424 L + + RP+ + HG+ V + + I N + +RL Sbjct: 588 QLMEYVKRMQPRPERVFTEHGDEKACVDLASSVYKKLKIETRAL-TNLETVRL 639 >2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP: d.157.1.10 Length = 429 Score = 206 bits (524), Expect = 1e-53 Identities = 82/430 (19%), Positives = 144/430 (33%), Gaps = 61/430 (14%) Query: 10 PLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSF------PKDDLPGV----------DL 53 G+ IG + Y I D G F P D + + DL Sbjct: 11 FHSGILTIGGTVIEVAYKD----AHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDL 66 Query: 54 VFPDIT----FIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKR 109 P + + A+F++HAH DH ++ L VP+Y +L + Sbjct: 67 YDPRLGYEYHGAEDKDYQHTAVFLSHAHLDHSRMINYLDP--AVPLYTLKETKMILNSLN 124 Query: 110 V---------YERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNI 160 +E + I D + VG S+E V V+H AL+IR+P I Sbjct: 125 RKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTPDHFI 184 Query: 161 VHTGDWKLDD---DAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNI 217 +TGD +L + L + EG+ + + +SE+ + +++ Sbjct: 185 TYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPAQIAVVSEEDLVQHL 244 Query: 218 YDIM-KNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVA--IDVGII 274 + +N + + ++V R II+ + R +VL + ++ V Sbjct: 245 VRLELENPNRQITFNGYPANVERFAKIIEKS---PRTVVLEANMAALLLEVFGIEVRYYY 301 Query: 275 KKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRA 334 + P + L+ T + + L E I S Sbjct: 302 AESGKIPELNPALEIPYDTLLKDKTDYLWQVVNQ----------FDNLQEGSLYIHSDAQ 351 Query: 335 IPGNEVAIG-HIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHG 393 G+ + L ++ + + + SGH P DL ++ I PQVLV IH Sbjct: 352 PLGDFDPQYRVFLDLLAKKDITFVR------LACSGHAIPEDLDKIIALIEPQVLVPIHT 405 Query: 394 EPLHLVAHKE 403 + + Sbjct: 406 LKPEKLENPY 415 >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651 Score = 200 bits (509), Expect = 8e-52 Identities = 85/481 (17%), Positives = 164/481 (34%), Gaps = 73/481 (15%) Query: 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLP---GVDLVFPDI 58 K+ + LGG E+G + L ++++D GV+ + P P+ Sbjct: 185 KSRWIRITGLGGFREVGRSALLVQTD----ESFVLVDFGVNVAMLNDPYKAFPHFDAPEF 240 Query: 59 TFIMKERKNLMAIFITHAHEDHYGALHDLWS--FLHVPVYASPFAIGLLEAK-------- 108 ++++E L AI ITHAH DH G L L+ P+Y +P L+ Sbjct: 241 QYVLREGL-LDAIIITHAHLDHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQ 299 Query: 109 -----------RVYERVSKKIPCISFQAGDKVDVGA-FSIESVRVNHSIPETMALV-IRS 155 R + V K + + G+ D+ + H + + + I + Sbjct: 300 QSNGQDPLYRPRDIKEVIKHTITLDY--GEVRDISPDIRLTLHNAGHILGSAIVHLHIGN 357 Query: 156 PVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKK 215 + NI TGD+K +L + + + + + +EK + + Sbjct: 358 GLHNIAITGDFKFIPTRLLEP--ANAKFPRLETLVMESTYGGANDIQMPREE-AEKRLIE 414 Query: 216 NIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIK 275 I++ +K G VL+ +V R + ++ + E+ R + + Sbjct: 415 VIHNTIKR-GGKVLIPAM--AVGRAQEVMMVLEEYARIGGIEVPIYLDGMIWEATAIHTA 471 Query: 276 ----------------KDQLFLSDESFGLYPREQLIVIATGSQGE-----PRSALAQLSR 314 FLS+ + + I ++ + S Sbjct: 472 YPEYLSRRLREQIFKEGYNPFLSEIFHPVANSRERQDIIDSNEPAIIIASSGMLVGGPSV 531 Query: 315 GEMRNVKLAEKDTVIFSSRAIPGNE----VAIGHIKNRLVEQGVRVIAEDAECPVHV--- 367 + + K+++IF S G + + E+G + + VH Sbjct: 532 EYFKQLAPDPKNSIIFVSYQAEGTLGRQVQSGIREIPMVGEEGRTEVIK-VNMEVHTIDG 590 Query: 368 -SGHPYPNDLKRMYQWI--RPQVLVAIHGEPLHLVAHKE-LALQEGIACVPPVRNGKMLR 423 SGH +L + RP+ ++ +HGEP + + + GI+ P N +R Sbjct: 591 FSGHADRRELMNYVAKVRPRPERIITVHGEPQKCLDLATSIHRKFGISTRAP-NNLDTIR 649 Query: 424 L 424 L Sbjct: 650 L 650 >2zdf_A Metallo-beta-lactamase superfamily protein; metallo beta lactmase fold, structural genomics, NPPSFA; HET: FLC; 2.50A {Thermus thermophilus} PDB: 3idz_A* 2dkf_A 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Length = 431 Score = 164 bits (416), Expect = 4e-41 Identities = 77/454 (16%), Positives = 151/454 (33%), Gaps = 62/454 (13%) Query: 8 FLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKN 67 +P G E+ + L G + +++DCG+ K++ F KE Sbjct: 3 IVPFGAAREVTGSAHLLLAGG----RRVLLDCGMFQGKEEARN----HAPFGFDPKEVD- 53 Query: 68 LMAIFITHAHEDHYGALHDLW-SFLHVPVYASPFAIGLLEAKRVYERVSKKIPCIS---- 122 A+ +THAH DH G L L+ PVYA+ + L+E P Sbjct: 54 --AVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDV 111 Query: 123 ---------FQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAI 173 + G+ + +GA S+ + H +P + +V + +V++GD + + Sbjct: 112 EEALGHLRPLEYGEWLRLGALSLAFGQAGH-LPGSAFVVAQGEGRTLVYSGDLGNREKDV 170 Query: 174 LGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTF 233 L D + ++ + + + + + + G VL+ TF Sbjct: 171 LPDPSLPP------LADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQ-GGKVLIPTF 223 Query: 234 SSSVSRIRSIIDIAEQIGRK-----IVLLGSSLKRVVSVA----------IDVGIIKKDQ 278 +V R + I+ + G + I L RV+S+ + ++ Sbjct: 224 --AVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKN 281 Query: 279 LFLSDESFGLYPREQLIVIATGSQGE-----PRSALAQLSRGEMRNVKLAEKDTVIFSSR 333 F + E + +++ ++ ++F Sbjct: 282 PFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGY 341 Query: 334 AIPG---NEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVA 390 G E+ R++ + V + A GH ++L Q +V Sbjct: 342 QPQGGLGAEIIARPPAVRILGEEVPLRAS-VHTLGGFQGHAGQDELLDWLQ--GEPRVVL 398 Query: 391 IHGEPLHLVAHKELALQEGIACVPPVRNGKMLRL 424 +HGE L+A +L G R G+ + + Sbjct: 399 VHGEEEKLLALGKLLALRGQEVSLA-RFGEGVPV 431 >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 Score = 145 bits (365), Expect = 3e-35 Identities = 66/467 (14%), Positives = 144/467 (30%), Gaps = 62/467 (13%) Query: 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFI 61 ++++L+ PLG E+G + + + + IM+DCG+ + + P I I Sbjct: 8 ESDQLLIRPLGAGQEVGRSCIILEFKG----RKIMLDCGIHPGLEGMD----ALPYIDLI 59 Query: 62 MKERKNLMAIFITHAHEDHYGALHDLWS--FLHVPVYASPFAIGLLEAK-RVYERVSKKI 118 + + + I+H H DH GAL + + + Y +VS Sbjct: 60 --DPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNIS 117 Query: 119 PCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVT 178 ++ IE++ + G+++ + ++ + T Sbjct: 118 ADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYT 177 Query: 179 DKDSL--------CAIGNEGILALMCDSTNAMREGTCISEK-GIKKNIYDIMKNAKGCVL 229 S I N L+ +ST E+ N + N G L Sbjct: 178 GDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGL 237 Query: 230 VTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDES---- 285 + F+ ++ ++ + E L + S+A + + + ++ Sbjct: 238 IPVFALGRAQ-ELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQ 296 Query: 286 ------------------FGLYPREQLIVIATGSQGEPRSALAQLS--RGEMRNVKLAEK 325 +V+A+ + + + RN + Sbjct: 297 ININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAG 356 Query: 326 DTVIFS-SRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIR 384 V + ++ I I + + + + V + S H + ++ Sbjct: 357 YCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDY------ISFSAHTDYQQTSEFIRALK 410 Query: 385 PQVLVAIHGEPLHLVAHKELALQE-------GIACVPPVRNGKMLRL 424 P ++ +HGE + K ++E I P RN + + L Sbjct: 411 PPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNP-RNTEAVTL 456 >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Length = 398 Score = 99.5 bits (247), Expect = 2e-21 Identities = 51/374 (13%), Positives = 107/374 (28%), Gaps = 50/374 (13%) Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS-FL 91 K ++D P + + + I K L + + H DH GA + Sbjct: 45 KTALVDTV------YEPFKEELIAKLKQIKDPVK-LDYLVVNHTESDHAGAFPAIMELCP 97 Query: 92 HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMAL 151 V + A L+A + G V +G S+ + ++ Sbjct: 98 DAHVLCTQRAFDSLKA----HYSHIDFNYTIVKTGTSVSLGKRSLT-FIEAPMLHWPDSM 152 Query: 152 VIRSPVGNIVHTGDWKLD---DDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGT-- 206 P ++ D D D + + ++ +N + + Sbjct: 153 FTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILMPFSNLITKKLDE 212 Query: 207 ----------------CISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQI 250 I K + I + A+G + + S +A + Sbjct: 213 IQKINLAIKTIAPSHGIIWRKDPGRIIEAYARWAEGQGKAKAVIAYDTMWLSTEKMAHAL 272 Query: 251 GRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALA 310 +V G +V + K +D + + +++ + + + Sbjct: 273 MDGLVAGG----------CEVKLFKLSVSDRNDVIKEI-LDARAVLVGSPTINNDILPVV 321 Query: 311 QLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGH 370 ++ ++ K + F + A ++ RL + +IAE V Sbjct: 322 SPLLDDLVGLRPKNKVGLAFGA--YGWGGGAQKILEERLKAAKIELIAEP---GPTVQWV 376 Query: 371 PYPNDLKRMYQWIR 384 P DL+R Y+ R Sbjct: 377 PRGEDLQRCYELGR 390 >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Length = 402 Score = 89.1 bits (220), Expect = 2e-18 Identities = 41/365 (11%), Positives = 108/365 (29%), Gaps = 31/365 (8%) Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS-FL 91 K + D + I ++ +K + + I H DH GAL L Sbjct: 44 KTTLFDTV------KAEYKGELLCGIASVIDPKK-IDYLVIQHLELDHAGALPALIEACQ 96 Query: 92 HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMAL 151 ++ S +E+ Y K P + G+ + +G ++ + ++ Sbjct: 97 PEKIFTSSLGQKAMESHFHY----KDWPVQVVKHGETLSLGKRTVTFYET-RMLHWPDSM 151 Query: 152 VIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEK 211 V ++ + D + A +D+ + + + E Sbjct: 152 VSWFADEKVLISNDIFGQNIAASERFSDQIPVHTLERAMREYYANIVNPYAPQTLKAIET 211 Query: 212 GIKKNI-YDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSS-------LKR 263 + + + + G + + + + + ++ K+V+ S + R Sbjct: 212 LVGAGVAPEFICPDHGVIFRGADQCTFAVQKYVEYAEQKPTNKVVIFYDSMWHSTEKMAR 271 Query: 264 VVSVAIDVGIIKKDQLFLSD----ESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRN 319 V++ + ++ + +++ + + + ++ Sbjct: 272 VLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHNNGILPYVAGTLQYIKG 331 Query: 320 VKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRM 379 ++ K F S + + + L G + A PV V P D +++ Sbjct: 332 LRPQNKIGGAFGS--FGWSGESTKVLAEWLTGMGFDMPAT----PVKVKNVPTHADYEQL 385 Query: 380 YQWIR 384 + Sbjct: 386 KTMAQ 390 >2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717 Score = 61.7 bits (149), Expect = 4e-10 Identities = 40/365 (10%), Positives = 93/365 (25%), Gaps = 80/365 (21%) Query: 35 IMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS----- 89 ++ID G + P I + K + I ++ + GA L+ Sbjct: 27 LLIDPGWN------PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSH 80 Query: 90 -FLHVPVYASPFAIGLLE------AKRVYERVSKKIP-------------CISFQAGDKV 129 + VYA+ I L + + V Sbjct: 81 FISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLV 140 Query: 130 DV----GAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCA 185 D+ ++ + ++ I + +V+ W D IL + D+ Sbjct: 141 DLRSRYDGLTLLAYNAGVCPGGSI-WCISTYSEKLVYAKRWNHTRDNILNAASILDATGK 199 Query: 186 IGNEGIL--ALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSI 243 + + A++ I K+ ++ G V++ + + Sbjct: 200 PLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVD--MSGKFLDL 257 Query: 244 IDIAEQIGRK-----------IVLLGSSLKRVVSVA--------------------IDVG 272 ++ + +++L + R ++ A Sbjct: 258 FTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPF 317 Query: 273 IIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSS 332 I ++ YP I + + ++ EK T+I + Sbjct: 318 EIGSRIKIIAPNELSKYP-GSKICFVSEVGALINEVIIKVGNS--------EKTTLILTK 368 Query: 333 RAIPG 337 + Sbjct: 369 PSFEC 373 >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A* Length = 404 Score = 54.4 bits (130), Expect = 7e-08 Identities = 57/372 (15%), Positives = 123/372 (33%), Gaps = 44/372 (11%) Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHEDHYGALHDLWS- 89 +ID D + + +++ + + I H +DH G L +L Sbjct: 45 GVALIDNS------YPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRR 98 Query: 90 FLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETM 149 F P+Y + A+ L K + + + + + H P++M Sbjct: 99 FPEAPIYCTEVAVKGLL-KHYPSLREAEFMTVKTGDVLDLGGKTLTFLETPLLHW-PDSM 156 Query: 150 ALVIRSPVGNIVHTGDWKLD---DDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGT 206 ++ I+ + D L + L + L+ + + + Sbjct: 157 FTLL--DEDGILFSNDAFGQHLCCPQRLDREIPEYILMDAARKFYANLITPLSKLVLKKF 214 Query: 207 C-ISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL------GS 259 + E G+ + I I + G + ++ + I + A + + V + GS Sbjct: 215 DEVKELGLLERIQMIA-PSHGQI----WTDPMKIIEAYTGWATGMVDERVTVIYDTMHGS 269 Query: 260 SLKRVVSVA-------IDVGIIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQL 312 + K ++A +DV + + S+ + + + A EP ++ L Sbjct: 270 TRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSVGDL 329 Query: 313 --SRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGH 370 ++ + + ++F S + GN A G +K L E G V V Sbjct: 330 LMYLRGLKFNRTLTRKALVFGS--MGGNGGATGTMKELLAEAGFDVAC-----EEEVYYV 382 Query: 371 PYPNDLKRMYQW 382 P ++L ++ Sbjct: 383 PTGDELDACFEA 394 >2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Length = 303 Score = 53.2 bits (127), Expect = 2e-07 Identities = 31/181 (17%), Positives = 61/181 (33%), Gaps = 34/181 (18%) Query: 7 VFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERK 66 + L +G++ + + L G W +++ G+S +LV+ D+ + + Sbjct: 12 LDDDLCLLGDVQVPVFLLRLGE---ASWALVEGGIS------RDAELVWADLCRWVADPS 62 Query: 67 NLMAIFITHAHEDHYGALHD-LWSFLHVPVYASPFAIGLLEAKRVYERVSK--------- 116 + ITH H DH G L +V V AS +++ V + Sbjct: 63 QVHYWLITHKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAE 122 Query: 117 ----------KIPCISFQAGDKVDVGAFSIESVRVN--HSIPETMALVIRSPVGNIVHTG 164 +P + G+ +++G V HS + + + G Sbjct: 123 QRLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHS-DDHVVFYD--VRRRRLFCG 179 Query: 165 D 165 D Sbjct: 180 D 180 >2q0i_A Quinolone signal response protein; quorum sensing, pseudomonas quinolone signal, PQS, metall- beta-lactamase, iron, phosphodiesterase; 1.57A {Pseudomonas aeruginosa} SCOP: d.157.1.14 PDB: 2q0j_A 3dh8_A* Length = 303 Score = 52.7 bits (125), Expect = 2e-07 Identities = 30/179 (16%), Positives = 63/179 (35%), Gaps = 17/179 (9%) Query: 7 VFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERK 66 + L +G++ + + L G W +++ G+S +LV+ D+ + + Sbjct: 12 LDDDLCLLGDVQVPVFLLRLGE---ASWALVEGGIS------RDAELVWADLCRWVADPS 62 Query: 67 NLMAIFITHAHEDHYGALHD-LWSFLHVPVYASPFAIGLLEAK---RVYERVSKKIPCIS 122 + ITH H DH G L +V V AS +++ RV ER+++++ Sbjct: 63 QVHYWLITHKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAE 122 Query: 123 FQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKL----DDDAILGDV 177 + + A + +V + ++ + GD Sbjct: 123 QRLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDA 181 >1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER assymmetric UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Length = 263 Score = 52.6 bits (125), Expect = 3e-07 Identities = 20/200 (10%), Positives = 50/200 (25%), Gaps = 23/200 (11%) Query: 14 VGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFI 73 VG + L I+I+ + V ++ I + + + + I Sbjct: 20 VGTDDLASYLIVTPR----GNILINSDLE------ANVPMIKASIKKLGFKFSDTKILLI 69 Query: 74 THAHEDHYGALHDLWSFLHVPVYASPFAIGLLE---------AKRVYERVSKKIPCISFQ 124 +HAH DH + + ++ A ++ Sbjct: 70 SHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLH 129 Query: 125 AGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLC 184 G++V++G + + + + + + + + Sbjct: 130 DGERVELGGTVLTAHLTPGHTRGCTTWTM--KLKDHGKQYQAVIIGSIGVNP--GYKLVD 185 Query: 185 AIGNEGILALMCDSTNAMRE 204 I I S + Sbjct: 186 NITYPKIAEDYKHSIKVLES 205 >2whg_A VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BETA-alpha fold; HET: FLC; 1.90A {Pseudomonas aeruginosa} PDB: 2wrs_A* 1ko3_A 1ko2_A Length = 230 Score = 51.9 bits (124), Expect = 3e-07 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 17/142 (11%) Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER--KNLMAIFITHAHEDHYGALHDLWSF 90 + ++ID + ++++ + TH H+D G + D+ Sbjct: 48 ELLLIDTAWGAKN---------TAALLAEIEKQIGLPVTRAVSTHFHDDRVGGV-DVLRA 97 Query: 91 LHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMA 150 V YASP L EA+ + +GD V G + HS + + Sbjct: 98 AGVATYASPSTRRLAEAE--GNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHS-TDNLV 154 Query: 151 LVIRSPVGNIVHTGDWKLDDDA 172 + + P N+++ G + Sbjct: 155 VYV--PSANVLYGGCAVHELSR 174 >2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Length = 210 Score = 51.5 bits (123), Expect = 5e-07 Identities = 28/162 (17%), Positives = 44/162 (27%), Gaps = 20/162 (12%) Query: 27 GSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHD 86 +R ++D G + LM I +TH H DH GA + Sbjct: 19 WCEQTRLAALVDPGGDAE-----------KIKQEVDASGVTLMQILLTHGHLDHVGAASE 67 Query: 87 LWSFLHVPVYASPFAIGLLEAKRV-------YERVSKKIPCISFQAGDKVDVGAFSIESV 139 L VPV + P GD+V VG +++ + Sbjct: 68 LAQHYGVPVIGPEKEDEFWLQGLPAQSRMFGLDECQPLTPDRWLNDGDRVSVGNVTLQVL 127 Query: 140 RVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKD 181 P + ++ +GD D D Sbjct: 128 HCPGHTPGHVVFFD--EQSQLLISGDVIFKGGVGRSDFPRGD 167 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 51.1 bits (122), Expect = 7e-07 Identities = 66/425 (15%), Positives = 108/425 (25%), Gaps = 206/425 (48%) Query: 7 VFLPLGGVGEIGM-NMALYGYGSPSSRKWIMIDC---GVSFPKDDLPGVDLVFPDITFIM 62 + PL IG+ +A Y ++ G + PG +L Sbjct: 236 ISCPL-----IGVIQLAHY-----------VVTAKLLGFT------PG-EL--------- 263 Query: 63 KERKNL-----------MAIFITHAH--EDHYGALHDLWSFLHVPVYASPFAIGLLEAKR 109 R L A+ I E + ++ + L F IG+ Sbjct: 264 --RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL--------FFIGV-RCYE 312 Query: 110 VYERVSKKIPCISFQAGDKVDVGAFSIE-------SVR-------------VNHSIPET- 148 Y S +P + D ++ E S+ N +P Sbjct: 313 AYPNTS--LPPSILE--DSLENN----EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364 Query: 149 ---MALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREG 205 ++L + N+V +G + SL L L +R+ Sbjct: 365 QVEISL-VNGA-KNLVVSGPPQ--------------SLYG------LNL------TLRK- 395 Query: 206 TCISEKGIKKNIYDIMKNAKGC------------VLVTTF--------SSSVSRIRSII- 244 K G F S + +I Sbjct: 396 ---------------AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440 Query: 245 -DIAEQIGRKIVLLGSSLKRVVSVAIDV-----GIIKKDQLFLSDESFGLYPREQLI-VI 297 D+ + + ++ I V G D L S + R ++ I Sbjct: 441 KDLVKN---NVSFNAKDIQ------IPVYDTFDG---SD---LRVLSGSISER--IVDCI 483 Query: 298 ATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAI----PGNEVAIGHIKNRLVE-Q 352 P VK E T F + I PG +G + +R + Sbjct: 484 IR----LP--------------VKW-ETTTQ-FKATHILDFGPGGASGLGVLTHRNKDGT 523 Query: 353 GVRVI 357 GVRVI Sbjct: 524 GVRVI 528 Score = 49.9 bits (119), Expect = 1e-06 Identities = 106/617 (17%), Positives = 182/617 (29%), Gaps = 224/617 (36%) Query: 26 YGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALH 85 +GS ++ + P + F K L A +D Sbjct: 13 HGS--------LEHVLLVPTASFFIAS-QLQE-QFN----KILPEPTEGFAADDEPTTPA 58 Query: 86 DLW-SFL-HVPVYASPFAIG-----LLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIES 138 +L FL +V P +G L +E + G+ D+ A Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN--------CYLEGN--DIHAL---- 104 Query: 139 VRVNHSIPETMAL----VIRSPVGNIVHTGD--WKLDDDAILGDVTDKD-SLCAI-GNEG 190 +T + +I++ + + K + A+ V + + L AI G +G Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164 Query: 191 ILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSR-----IRSIID 245 +T+ E +++Y VLV + IR+ +D Sbjct: 165 -------NTD-----DYFEEL---RDLYQTYH-----VLVGDLIKFSAETLSELIRTTLD 204 Query: 246 IAEQIGRKIVLLGSSLKR---------VVSVAIDVGIIKKDQL---FLSDESFGLYPRE- 292 + + + +L L+ ++S+ I +I QL ++ + G P E Sbjct: 205 AEKVFTQGLNIL-EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263 Query: 293 -QLIVIATG-SQG-EPRSALAQLSRGE--MRNVKLAEKDTVIFSSRAIPGNEVAIGHIKN 347 + ATG SQG A+A+ E +V+ A TV+F I Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI--TVLF-------------FI-- 306 Query: 348 RLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVL---VAIHGE--PLHLVAHK 402 GVR YPN + P +L + + E P +++ Sbjct: 307 -----GVR------------CYEAYPN------TSLPPSILEDSLE-NNEGVPSPMLSIS 342 Query: 403 EL---ALQEGI----ACVPPVR-------NGKMLRLFPDPIEIIDEVV-------HGLFL 441 L +Q+ + + +P + NG + VV +GL L Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNG------AKNL-----VVSGPPQSLYGLNL 391 Query: 442 KDGFL--IGKFADLGIAK----RRQLSFVGH--LSVNVLLDNHY------NI---FGVPE 484 L + L ++ R+L F + L V +H I Sbjct: 392 T---LRKAKAPSGLDQSRIPFSERKLKFS-NRFLPVASPFHSHLLVPASDLINKDLVKNN 447 Query: 485 IV----DIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISSALRSLLKK 540 + DI IP YD G D LR S ++ Sbjct: 448 VSFNAKDIQIPVYDTFDGS--------------D-----------LRVLSGSISERIVDC 482 Query: 541 V------WGKKPLVTVF 551 + W T F Sbjct: 483 IIRLPVKW---ETTTQF 496 Score = 49.6 bits (118), Expect = 2e-06 Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 62/181 (34%) Query: 290 PREQLIVIA--TGSQ-----GEPRSALAQLSRGEMRNVKL-AEKDT--VIFSSRA----- 334 P + + I+ G++ G P+S L L+ +R K + D + FS R Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQS-LYGLNL-TLRKAKAPSGLDQSRIPFSERKLKFSN 418 Query: 335 --IPGNEVAIG---H----------IKNRLVEQGVRVIAEDAECPVH--VSGHPYPNDLK 377 +P + H I LV+ V A+D + PV+ G +DL+ Sbjct: 419 RFLP-----VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG----SDLR 469 Query: 378 RMYQWIRPQVLVAIHGEPLHLVAHKELALQE-----------GIACVPPV--RN--GKML 422 + I +++ I P+ E Q G + + + RN G + Sbjct: 470 VLSGSISERIVDCIIRLPVKW----ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV 525 Query: 423 R 423 R Sbjct: 526 R 526 Score = 27.2 bits (60), Expect = 9.6 Identities = 39/201 (19%), Positives = 77/201 (38%), Gaps = 60/201 (29%) Query: 130 DVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTG--------------------DWKLD 169 D FSI + +VI +PV +H G D KL Sbjct: 1655 DTYGFSI------------LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702 Query: 170 DDAILGDVTDKDSLCAIGNE-GILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCV 228 + I ++ + + +E G+L+ +T + + EK ++ +K +KG + Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLS----ATQFTQPALTLMEKA----AFEDLK-SKGLI 1753 Query: 229 LV-TTFSS-SVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGI-----IKKDQLFL 281 TF+ S+ ++ +A+ + S++ +V V G+ + +D+L Sbjct: 1754 PADATFAGHSLGEYAALASLADVM---------SIESLVEVVFYRGMTMQVAVPRDELGR 1804 Query: 282 SDESFGLYPREQLIVIATGSQ 302 S+ +G+ V A+ SQ Sbjct: 1805 SN--YGMIAINPGRVAASFSQ 1823 >1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Length = 228 Score = 49.4 bits (117), Expect = 2e-06 Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 21/159 (13%) Query: 8 FLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKN 67 F + G G + + + + + +ID + +T+ ++ Sbjct: 22 FEEVNGWGVVPKHGLVVL----VNAEAYLIDTPFT--------AKDTEKLVTWFVERGYK 69 Query: 68 LMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGD 127 + +H H D G + L S +P YAS LL+ + +G Sbjct: 70 IKGSISSHFHSDSTGGIEWLNSR-SIPTYASELTNELLKKDGKV-------QATNSFSGV 121 Query: 128 KVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDW 166 + IE V+ P I+ G + Sbjct: 122 NYWLVKNKIEVFYPGPGHTPDNV-VVWLPERKILFGGCF 159 >3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Length = 261 Score = 49.3 bits (117), Expect = 2e-06 Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 39/157 (24%) Query: 30 SSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS 89 + +MID GVS D +D L I +TH H DH G L +L Sbjct: 27 GEKLTVMIDAGVSNSIADFSFLD--------------KLDYIVLTHLHIDHIGLLPELLQ 72 Query: 90 FLHVPVYASPFAIGLLEAKRVYERVSKKI---------------------PCISFQAGDK 128 V L ++ +++++ I + ++ Sbjct: 73 VYKAKVLVKSGFKKYLTSEDGLKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNEE 132 Query: 129 VDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGD 165 D+G + + + M++++ + + TGD Sbjct: 133 FDLGGYRMRLIYTPGHARHHMSVLV----DDFLFTGD 165 >1xto_A Coenzyme PQQ synthesis protein B; alpha-beta protein, northeast structural genomics consortium, NESG, protein structure initiative; 2.80A {Pseudomonas putida KT2440} SCOP: d.157.1.6 Length = 311 Score = 47.1 bits (110), Expect = 1e-05 Identities = 25/234 (10%), Positives = 62/234 (26%), Gaps = 23/234 (9%) Query: 32 RKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER-KNLMAIFITHAHEDHYGALHDLWSF 90 WI+ + D+ F + R + AI + + DH L L Sbjct: 49 VHWILCNAS-----PDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLREG 103 Query: 91 LHVPVYASPFAIGLLEAKRVYERVSKKI-------PCISFQAGDKVDVGAFSIESVRVNH 143 V+ + L + + + Sbjct: 104 CPHQVWCTDMVHQDLTTGFPLFNMLSHWNGGLQWNRIELEGSFVIDACPNLKFTPFPLRS 163 Query: 144 SIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMR 203 + P G+ + + +D G +E +LA+M + + Sbjct: 164 AAPPYSPHRFDPHPGDNLGL----MVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLLV 219 Query: 204 EGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL 257 +GT + +++ + + + ++++ + R+ +L Sbjct: 220 DGTLWEDDEMQRRGVGTRTGRE------MGHLAQNGPGGMLEVLDGFPRQRKVL 267 >3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida KT2440} PDB: 1xto_A Length = 321 Score = 46.8 bits (110), Expect = 1e-05 Identities = 19/178 (10%), Positives = 36/178 (20%), Gaps = 14/178 (7%) Query: 32 RKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFL 91 WI+ + D + P + AI + + DH L L Sbjct: 51 VHWILCNAS----PDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLREGC 106 Query: 92 HVPVYASPFAIGLLEAKRVYERVSKKI-------PCISFQAGDKVDVGAFSIESVRVNHS 144 V+ + L + + + + Sbjct: 107 PHQVWCTDMVHQDLTTGFPLFNMLSHWNGGLQWNRIELEGSFVIDACPNLKFTPFPLRSA 166 Query: 145 IPETMALVIRSPVGN---IVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDST 199 P G+ ++ + D G L+ D T Sbjct: 167 APPYSPHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLLVDGT 224 >2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline binding protein; PCE, hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Length = 547 Score = 45.6 bits (107), Expect = 3e-05 Identities = 29/189 (15%), Positives = 53/189 (28%), Gaps = 43/189 (22%) Query: 29 PSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER---------------KNLMAIFI 73 S+ + M+D G + D + + + + L I + Sbjct: 24 ESNGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLDFILV 83 Query: 74 THAHEDHYGALHDLWSFLHV-PVYASPFA-------IGLLEAKRVYERVSK-------KI 118 TH H DH G + +L S V VY ++ L + Y++V + + Sbjct: 84 THTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTATETGVSV 143 Query: 119 PCISFQAGDKVDVGAFSIESVRVNHSIPET-------------MALVIRSPVGNIVHTGD 165 Q G I+ + + + V++ I GD Sbjct: 144 IQNITQGDAHFQFGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGD 203 Query: 166 WKLDDDAIL 174 A Sbjct: 204 LDNVHGAED 212 >2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Length = 280 Score = 44.0 bits (102), Expect = 9e-05 Identities = 33/262 (12%), Positives = 64/262 (24%), Gaps = 45/262 (17%) Query: 21 MALYGYGSPSSRKW-------IMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFI 73 M + G+ W I+ D G GV T + + +F+ Sbjct: 1 MNIIGFSKALFSTWIYYSPERILFDAG--------EGV------STTLGSKVYAFKYVFL 46 Query: 74 THAHEDHYGALHDLWS-------------FLHVPVYASPFAIGLLEAKRVYERVSKKIPC 120 TH H DH L + + + P KR + Sbjct: 47 THGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNV 106 Query: 121 ISFQAG-----DKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILG 175 + G ++ R H E V + LD I Sbjct: 107 HPLKEGERVFLRNAGGFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEI-- 164 Query: 176 DVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSS 235 + G + + + + + + ++ Sbjct: 165 ----SRLVKEKGRDFVTEEYHKKVLTISGDSLALDPEEIRGTELLIHECTFLDARDRRYK 220 Query: 236 SVSRIRSIIDIAEQIGRKIVLL 257 + + I +++ + G K V+L Sbjct: 221 NHAAIDEVMESVKAAGVKKVIL 242 >3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} Length = 219 Score = 42.3 bits (99), Expect = 3e-04 Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 19/138 (13%) Query: 30 SSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER-KNLMAIFITHAHEDHYGALHDLW 88 + + ++ D K + + I K ++A+F TH+H+D G L Sbjct: 38 TKKGVVLFDVPWE--KVQYQSL------MDTIKKRHNLPVVAVFATHSHDDRAGDLSFFN 89 Query: 89 SFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHS-IPE 147 + + YA+ + ++ K + G +G + + Sbjct: 90 N-KGIKTYATA------KTNEFLKKDGKATSTEIIKTGKPYRIGGEEFVVDFLGEGHTAD 142 Query: 148 TMALVIRSPVGNIVHTGD 165 + + P N++ G Sbjct: 143 NVVVWF--PKYNVLDGGC 158 >1ko3_A VIM-2 metallo-beta-lactamase; alpha-beta/BETA-alpha fold, hydrolase; 1.91A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1ko2_A Length = 230 Score = 41.4 bits (96), Expect = 5e-04 Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 15/144 (10%) Query: 30 SSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER-KNLMAIFITHAHEDHYGALHDLW 88 + ++ID + I K+ + TH H+D G + D+ Sbjct: 45 DGDELLLIDTAWGAKNTA--------ALLAEIEKQIGLPVTRAVSTHFHDDRVGGV-DVL 95 Query: 89 SFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPET 148 V YASP L E + +GD V G + HS T Sbjct: 96 RAAGVATYASPSTRRLAE--VEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHS---T 150 Query: 149 MALVIRSPVGNIVHTGDWKLDDDA 172 LV+ P ++++ G + Sbjct: 151 DNLVVYVPSASVLYGGCAIYELSR 174 >1ztc_A Hypothetical protein TM0894; structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Length = 221 Score = 41.5 bits (96), Expect = 5e-04 Identities = 28/169 (16%), Positives = 53/169 (31%), Gaps = 15/169 (8%) Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS--- 89 + I+ID G +D + + + ++ + TH H DH + Sbjct: 45 RRIIIDPGNL------SSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFENATF 98 Query: 90 FLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETM 149 ++H + R+Y +V + G++ H+ Sbjct: 99 YVHEVYKTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDEKVKVFHTPWHAREHLS 158 Query: 150 ALVIRSPVGNIVHTGD------WKLDDDAILGDVTDKDSLCAIGNEGIL 192 L+ G ++ TGD D G V K+ L +G +L Sbjct: 159 FLLDTENAGRVLITGDITPNRLSYYDIIKGYGSVQVKNFLDRVGRIDLL 207 >1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Length = 223 Score = 40.6 bits (94), Expect = 9e-04 Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 17/141 (12%) Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER-KNLMAIFITHAHEDHYGALHDLWSFL 91 ++IDC G D I K+ K ++ TH+H+D G L + + + Sbjct: 37 GVVVIDCP--------WGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGL-EYFGKI 87 Query: 92 HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMAL 151 Y++ + + +K +F VG + + Sbjct: 88 GAKTYSTKM------TDSILAKENKPRAQYTFDNNKSFKVGKSEFQVYYPGKGHTADN-V 140 Query: 152 VIRSPVGNIVHTGDWKLDDDA 172 V+ P ++ G D+ Sbjct: 141 VVWFPKEKVLVGGCIIKSADS 161 >2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrolase; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Length = 311 Score = 40.3 bits (93), Expect = 0.001 Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 14/151 (9%) Query: 24 YGY--GSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKN--LMAIFITHAHED 79 + Y ++ +D D P + + + I TH H D Sbjct: 41 FSYLINDHTTHTLAAVDVNA----DYKPILTYIEEHLKQQGNADVTYTFSTILSTHKHWD 96 Query: 80 HYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESV 139 H G L + L P + + + GD+V VG S+E + Sbjct: 97 HSGGNAKLKAELEAMNSTVPVVVVGGANDSIP------AVTKPVREGDRVQVGDLSVEVI 150 Query: 140 RVNHSIPETMALVIRSPVGNIVHTGDWKLDD 170 + ++ P + D Sbjct: 151 DAPCHTRGHVLYKVQHPQHPNDGVALFTGDT 181 >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Length = 414 Score = 40.1 bits (93), Expect = 0.001 Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 1/43 (2%) Query: 66 KNLMAIFITHAHEDHYGALHDLWS-FLHVPVYASPFAIGLLEA 107 + + + HA DH +L D + F + + L+ Sbjct: 76 DKIKYVVMNHAEGDHASSLKDHYHKFTNATFVCTKKCQEHLKI 118 >1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 2bfz_A 2bg6_A 2bga_A ... Length = 227 Score = 38.7 bits (89), Expect = 0.003 Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 15/133 (11%) Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLH 92 +++D K +++V K +K + + ITHAH D G + L Sbjct: 51 GLVLVDSSWD-DKLTKELIEMV------EKKFQKRVTDVIITHAHADRIGGIKTLKER-G 102 Query: 93 VPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALV 152 + +++ L + E P Q + G +E+ E +V Sbjct: 103 IKAHSTALTAELAKKNGYEE------PLGDLQTVTNLKFGNMKVETFYPGKGHTEDN-IV 155 Query: 153 IRSPVGNIVHTGD 165 + P NI+ G Sbjct: 156 VWLPQYNILVGGC 168 >1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Length = 260 Score = 38.6 bits (89), Expect = 0.004 Identities = 21/147 (14%), Positives = 36/147 (24%), Gaps = 30/147 (20%) Query: 24 YGY--GSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHY 81 Y Y +++ ++D P + K L + TH H DH Sbjct: 13 YMYLVIDDETKEAAIVD----------PVQPQ--KVVDAARKHGVKLTTVLTTHHHWDHA 60 Query: 82 GALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV 141 G L + VG+ +++ + Sbjct: 61 GGNEKLVKLESGLKVYGGDD-------------RIGALTHKITHLSTLQVGSLNVKCLAT 107 Query: 142 NHSIPETMALVIRSPVG---NIVHTGD 165 + + P G V TGD Sbjct: 108 PCHTSGHICYFVSKPGGSEPPAVFTGD 134 >1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Length = 331 Score = 38.3 bits (88), Expect = 0.005 Identities = 22/151 (14%), Positives = 44/151 (29%), Gaps = 20/151 (13%) Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLH 92 K +++D G P + + ++ + + + I+ITH H DH G L Sbjct: 107 KLVLVDTG--AAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQLAF 164 Query: 93 VPVY------------------ASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAF 134 +P K ++ + F+ Sbjct: 165 PNAVVRADQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFSGNTDLVP 224 Query: 135 SIESVRVNHSIPETMALVIRSPVGNIVHTGD 165 I+++ + P V+ S + GD Sbjct: 225 GIKALASHGHTPGHTTYVVESQGQKLALLGD 255 >1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Length = 410 Score = 38.2 bits (88), Expect = 0.005 Identities = 43/345 (12%), Positives = 102/345 (29%), Gaps = 39/345 (11%) Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLH 92 ++ID ++ I+ ++ + I + H DH G+L + Sbjct: 62 ANVLIDGW------KGNYAKEFIDALSKIVDPKE-ITHIIVNHTEPDHSGSLPATLKTIG 114 Query: 93 VPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV-NHSIPETMAL 151 V I KR+ E + G++ ++G + V P+TM Sbjct: 115 HDVE----IIASNFGKRLLEGFYGIKDVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVT 170 Query: 152 VIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGT----- 206 + + + G + L + + + + + I+ ++ N + EG Sbjct: 171 YLDGILFSCDVGGGYLLPEILDDSNESVVERYLPHVTKYIVTVIGHYKNYILEGAEKLSS 230 Query: 207 -----------CISEKGIKKNIYDIMKNAK-GCVLVTTFSSSVSRIRSIIDIAEQIGRKI 254 I +K ++ + + AK S + ++ ++ + Sbjct: 231 LKIKALLPGHGLIWKKDPQRLLNHYVSVAKGDPKKGKVTVIYDSMYGFVENVMKKAIDSL 290 Query: 255 VLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSR 314 G + + I + + D ++ + L + + Sbjct: 291 KEKGFTPVVYKFSDEERPAISEILKDIPDSEA--------LIFGVSTYEAEIHPLMRFTL 342 Query: 315 GEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAE 359 E+ + EK ++F A L E R+++ Sbjct: 343 LEIIDKANYEKPVLVFGVHG--WAPSAERTAGELLKETKFRILSF 385 >3kl7_A Putative metal-dependent hydrolase; structural genomics, joint center for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Length = 235 Score = 37.8 bits (87), Expect = 0.007 Identities = 14/102 (13%), Positives = 25/102 (24%), Gaps = 1/102 (0%) Query: 70 AIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKV 129 I ITH H DH + K + IS+ + V Sbjct: 68 IILITHEHGDHLDPKAIQAVEKSDTEIIANENSQKKLGKGKVLKNGDTDTSISYMKIEAV 127 Query: 130 DVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDD 171 + + H ++ + GD + + Sbjct: 128 PAYNTTPGRDK-YHPRHRDNGYILTFDGLRVYIAGDTEDIPE 168 >2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; 2.10A {Thermoanaerobacter tengcongensis MB4} Length = 284 Score = 37.3 bits (85), Expect = 0.009 Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 21/156 (13%) Query: 30 SSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGAL-HDLW 88 K I++D G S + + + + + + +TH H DH G L L Sbjct: 40 KGNKEIVVDTGQS---------ENFIKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLE 90 Query: 89 SFLHVPVYASPFAIGLLEAKRVYERVSK-----------KIPCISFQAGDKVDVGAFSIE 137 V +Y + A R + + K + +++ G + I Sbjct: 91 RNPEVKIYTHKEILNKKYAMRKGGQFEEIGFDLSFYEKYKNNFVLIDKDAEIEEGFYVIT 150 Query: 138 SVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAI 173 + + + T G + + Sbjct: 151 NTDITYDNEFTTKNFFVEKEGKRIPDKFLDEVFVVV 186 >1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Length = 232 Score = 36.0 bits (82), Expect = 0.022 Identities = 28/198 (14%), Positives = 56/198 (28%), Gaps = 29/198 (14%) Query: 8 FLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKN 67 + G G + N + + ++D ++ V+ V Sbjct: 26 LAEIEGWGMVPSNGMIVINN----HQAALLDTPIN-DAQTEMLVNWV------TDSLHAK 74 Query: 68 LMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGD 127 + H H D G L L V YA+ I L + K + +P F Sbjct: 75 VTTFIPNHWHGDCIGGLGYLQR-KGVQSYANQMTIDLAKEKGLP------VPEHGFTDSL 127 Query: 128 KVDVGAFSIE--SVRVNHSIPETMALVIRSP---VGNIVHTGDWKLDDDAILGDVTD-KD 181 V + ++ + H+ + + G ++ + DVT Sbjct: 128 TVSLDGMPLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQTTSIGNISDADVTAWPK 187 Query: 182 SLCAIGNEGILALMCDST 199 +L + + A + Sbjct: 188 TL-----DKVKAKFPSAR 200 >3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Length = 267 Score = 36.0 bits (82), Expect = 0.025 Identities = 26/192 (13%), Positives = 56/192 (29%), Gaps = 23/192 (11%) Query: 70 AIFITHAHEDHYGALHDL---WSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAG 126 + I+H H DH G L L +L ++ E + + Sbjct: 64 DVLISHGHYDHAGGLLYLSGKRVWLRKEALDQKYSGERYAGADWNEVLYYNTGKFVIERI 123 Query: 127 DKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAI 186 ++ F + + + P G+ + + D D+ +L Sbjct: 124 TEIGKNMFLLGPANLRGKV----------PTGDFFVERNGERRKD----LFEDEQTLVVR 169 Query: 187 GNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDI 246 EG++ + S + + + I ++ SS I I+ Sbjct: 170 TKEGLVVITGCSHRGIDNILLDIAETFNERIKMVVG------GFHLLKSSDDEIEKIVKA 223 Query: 247 AEQIGRKIVLLG 258 ++G + V+ Sbjct: 224 FNELGVETVVPC 235 >1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Length = 254 Score = 35.6 bits (81), Expect = 0.032 Identities = 25/145 (17%), Positives = 42/145 (28%), Gaps = 27/145 (18%) Query: 24 YGY--GSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHY 81 Y Y + ++D P I + + +NL I TH H DH Sbjct: 13 YAYILHDEDTGTVGVVDPSE------------AEPIIDSLKRSGRNLTYILNTHHHYDHT 60 Query: 82 GALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV 141 G +L V S ++ ++ + GDK + + Sbjct: 61 GGNLELKDRYGAKVIGSA-----------MDKDRIPGIDMALKDGDKWMFAGHEVHVMDT 109 Query: 142 NHSIPETMALVIRSPVGNIVHTGDW 166 ++L P + TGD Sbjct: 110 PGHTKGHISLYF--PGSRAIFTGDT 132 >2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus HB8} Length = 317 Score = 35.1 bits (79), Expect = 0.046 Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 4/70 (5%) Query: 30 SSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS 89 + + ++D + + + + +++ I +TH H DHYG Sbjct: 29 GAGEVALVDTALGTR----AARGALELHLAELGLCFQDVKTILLTHHHPDHYGLSGFFEG 84 Query: 90 FLHVPVYASP 99 Sbjct: 85 LGARVFLHEE 94 >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein structure initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268 Score = 34.3 bits (77), Expect = 0.066 Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 23/84 (27%) Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLH 92 +++DCG + ++ A+ ++H H DH + L Sbjct: 53 FRLLVDCGSGVLAQLQKYITP------------SDIDAVVLSHYHHDHVADIGVLQYARL 100 Query: 93 -----------VPVYASPFAIGLL 105 +P+Y F Sbjct: 101 ITSATKGQLPELPIYGHTFDENGF 124 >2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Length = 658 Score = 34.3 bits (78), Expect = 0.081 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 6/52 (11%) Query: 34 WIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALH 85 WI++D + P +LV ++ + + + +HAH DH+G + Sbjct: 134 WIVVDTLTT-PATARAAYELVSRELG-----ERPIRTVIYSHAHADHFGGVR 179 >3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural genomics, PSI-2; 1.80A {Vibrio cholerae o1 biovar eltor str} Length = 379 Score = 32.4 bits (73), Expect = 0.29 Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 1/81 (1%) Query: 70 AIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKV 129 A+ +H H DH + + + V ++ + + GD + Sbjct: 136 AVLASHDHADHIDVNVAAAVLQNCGEHVKFIGPQACVDLWLGWGVPQERCIV-AKVGDVL 194 Query: 130 DVGAFSIESVRVNHSIPETMA 150 ++G I + Sbjct: 195 EIGDVKIRVLDSFDRTALVTL 215 >2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Length = 360 Score = 32.1 bits (72), Expect = 0.30 Identities = 18/100 (18%), Positives = 27/100 (27%), Gaps = 9/100 (9%) Query: 70 AIFITHAHEDHYG--ALHDLWSFLHV--PVYASPFAIGLLEAKRVYERVSKKIPCISFQA 125 A+ TH H DH + P + L V + CI + Sbjct: 112 AVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKE-----RCIVVKP 166 Query: 126 GDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGD 165 GD V V I ++ + G + D Sbjct: 167 GDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMD 206 >3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding, periplasm,; HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A Length = 227 Score = 31.6 bits (71), Expect = 0.53 Identities = 18/144 (12%), Positives = 48/144 (33%), Gaps = 17/144 (11%) Query: 31 SRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSF 90 ++ ++ + D + + ++ RK ++ + T+ H D G W Sbjct: 31 AKGVTVVGAT--WTPDTARELHKLIKRVS-----RKPVLEVINTNYHTDRAGGNAY-WKS 82 Query: 91 LHVPVYASPFAIGLL-----EAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSI 145 + V ++ L+ E + + P + + V G F+++ +V Sbjct: 83 IGAKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRAFY 142 Query: 146 PETM----ALVIRSPVGNIVHTGD 165 + + P +++ G Sbjct: 143 AGPAHTPDGIFVYFPDEQVLYGGC 166 >3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, seattle structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} Length = 293 Score = 31.1 bits (69), Expect = 0.66 Identities = 22/158 (13%), Positives = 42/158 (26%), Gaps = 22/158 (13%) Query: 21 MALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER--KNLMAIFITHAHE 78 + + Y + + ++ID G PD M + L A TH H Sbjct: 66 LLVERYDAEGNNTVVVIDTG---------------PDFRMQMIDSGVHMLDAAVYTHPHA 110 Query: 79 DHYGALHDLWSFLH-----VPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGA 133 DH + DL +++ + VYA+ L Y + Sbjct: 111 DHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFETPVGSSYPPILSMHDIAPE 170 Query: 134 FSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDD 171 +I + + ++ + Sbjct: 171 TPFSIEGAGGAIRFEPFSQVHGDIESLGFRIGSVVYCT 208 >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ABG; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3c4f_A* Length = 334 Score = 30.9 bits (69), Expect = 0.86 Identities = 41/276 (14%), Positives = 82/276 (29%), Gaps = 57/276 (20%) Query: 311 QLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGH 370 L G V +A + I + VA+ +K+ E+ + + + E + H Sbjct: 42 PLGEGAFGQVVMA-EAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 100 Query: 371 PYPNDLKRMYQWIRPQVLV---AIHGEPLHLVAHKELALQEGIACVPPVRNGKMLRLFPD 427 +L P ++ A G + + E + V +M F D Sbjct: 101 KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM--TFKD 158 Query: 428 PIEIIDEVVHGL-----------------FLKDGFLIGKFADLGIAKRRQLSF------- 463 + ++ G+ L + K AD G+A+ Sbjct: 159 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 218 Query: 464 ----VGHLSVNVLLDNHYNIFGVP--------EIVDIGIPAYDGDGGKIHKLLLKTVITT 511 V ++ L D Y EI +G Y G Sbjct: 219 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI--------------P 264 Query: 512 VVDLPQFRRKDLKLLR-ESISSALRSLLKKVWGKKP 546 V +L + ++ ++ + + ++ L +++ W P Sbjct: 265 VEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVP 300 >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370 Score = 29.8 bits (66), Expect = 1.6 Identities = 44/275 (16%), Positives = 84/275 (30%), Gaps = 55/275 (20%) Query: 311 QLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGH 370 L G V +A + I + VA+ +K+ E+ + + + E + H Sbjct: 88 PLGEGCFGQVVMA-EAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 146 Query: 371 PYPNDLKRMYQWIRPQVLV---AIHGEPLHLVAHKELALQEGIACVPPVRNGKMLRLFPD 427 +L P ++ A G + + E + V +M F D Sbjct: 147 KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM--TFKD 204 Query: 428 PIEIIDEVVHGL-----------------FLKDGFLIGKFADLGIAK--------RRQLS 462 + ++ G+ L + K AD G+A+ ++ + Sbjct: 205 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 264 Query: 463 FVG---HLSVNVLLDNHYNI------FGV--PEIVDIGIPAYDGDGGKIHKLLLKTVITT 511 ++ L D Y FGV EI +G Y G + +L Sbjct: 265 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI--PVEELFKLLKEGH 322 Query: 512 VVDLPQFRRKDLKLLRESISSALRSLLKKVWGKKP 546 +D P + ++ L +++ W P Sbjct: 323 RMDKP-----------ANCTNELYMMMRDCWHAVP 346 >3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Length = 280 Score = 30.0 bits (66), Expect = 1.7 Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 8/71 (11%) Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMA--------IFITHAHEDHYGAL 84 ++ID G+ K + D + + +TH H DH L Sbjct: 58 YNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMTHMHFDHAAGL 117 Query: 85 HDLWSFLHVPV 95 D Sbjct: 118 TDQAGHAIFEN 128 >3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching, alternative binding site, product complex; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovarkurstaki} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Length = 254 Score = 28.8 bits (63), Expect = 3.5 Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 34/195 (17%) Query: 1 MKNEELVFLPLG-------------GVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDD 47 M ++L F+P G G++ +N+ ++ Y + I++D G+ + Sbjct: 5 MTVKKLYFIPAGRCMLDHSSVNSALTPGKL-LNLPVWCYLLETEEGPILVDTGMPESAVN 63 Query: 48 LPGV---DLVFPDITFIMKERKNLMA--------------IFITHAHEDHYGALHDLWSF 90 G+ V I M E ++ I +H H DH G + Sbjct: 64 NEGLFNGTFVEGQILPKMTEEDRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNT 123 Query: 91 LHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMA 150 + L + + GD V + HS Sbjct: 124 PIIVQR--TEYEAALHREEYMKECILPHLNYKIIEGDYEVVPGVQLL-YTPGHSPGHQSL 180 Query: 151 LVIRSPVGNIVHTGD 165 + G+++ T D Sbjct: 181 FIETEQSGSVLLTID 195 >2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistance, structure, hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Length = 246 Score = 28.8 bits (63), Expect = 3.6 Identities = 7/37 (18%), Positives = 10/37 (27%), Gaps = 1/37 (2%) Query: 70 AIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLE 106 TH H D G + ++S L Sbjct: 71 VAINTHFHLDGTGGNEIY-KKMGAETWSSDLTKQLRL 106 >3niv_A Glutathione S-transferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.30A {Legionella pneumophila subsp} Length = 222 Score = 28.6 bits (63), Expect = 4.1 Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 3/28 (10%) Query: 19 MNMALYGY-GSPSSRK--WIMIDCGVSF 43 M++ LY Y S + + + +++ Sbjct: 1 MSLILYDYFRSTACYRVRIALNLKKIAY 28 >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* Length = 413 Score = 28.3 bits (63), Expect = 4.1 Identities = 39/244 (15%), Positives = 68/244 (27%), Gaps = 36/244 (14%) Query: 167 KLDDDAILGDVTDKDSLCAIGNEG----ILALMCDSTNAMREGTCISEKGIKKNI----- 217 K GD T D L + G I A+ TN + I Sbjct: 45 KFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARD 104 Query: 218 ---YDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKI-VLLGSSLKRVVSVAIDVGI 273 Y ++ A G R + A + GR LG A Sbjct: 105 VDHYIRLRQA-GVEKP---------ERETFEGALKTGRLALESLGLGPYEARERADV--- 151 Query: 274 IKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKD--TVIFS 331 ++ + + +E + + + L+++ + ++ L ++ Sbjct: 152 FRRFNIQMVEEMAMVENDTKARAAVY---KRTSAMLSEIITEDREHLSLIQRHGWQGTEE 208 Query: 332 SRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDL---KRMYQWIRPQVL 388 + GN K G+ + + HPYP+ KRM + R Sbjct: 209 GKHT-GNMADEPETKPSSTSGGLVPRGSSGMILI-IYAHPYPHHSHANKRMLEQARTLEG 266 Query: 389 VAIH 392 V I Sbjct: 267 VEIR 270 >1y44_A Ribonuclease Z; zinc-dependent metal hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Length = 320 Score = 28.2 bits (61), Expect = 4.5 Identities = 15/65 (23%), Positives = 17/65 (26%), Gaps = 19/65 (29%) Query: 32 RKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERK----NLMAIFITHAHEDHYGALHDL 87 R + DCG M + IFITH H DH L L Sbjct: 31 RSVWLFDCG---------------EATQHQMLHTTIKPRKIEKIFITHMHGDHVYGLPGL 75 Query: 88 WSFLH 92 Sbjct: 76 LGSRS 80 >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 Score = 27.7 bits (60), Expect = 6.1 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 3/99 (3%) Query: 342 IG-HIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVA 400 IG H L+E G + D G P L+R+ + V + L A Sbjct: 14 IGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF-EEMDILDQGA 72 Query: 401 HKELALQEGIACVPPVRNGKMLRL-FPDPIEIIDEVVHG 438 + L + V K + P++ + G Sbjct: 73 LQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTG 111 >2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1 Length = 126 Score = 27.6 bits (61), Expect = 6.9 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 10/104 (9%) Query: 176 DVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSS 235 D + D L G E + + N + T + + ++K K F+ Sbjct: 28 DASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFK-----KKFAC 82 Query: 236 SVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQL 279 + + +I+ E G I L G K + +++G+ K DQL Sbjct: 83 NGT----VIEHPEY-GEVIQLQGDQRKNICQFLVEIGLAKDDQL 121 >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A Length = 300 Score = 27.7 bits (61), Expect = 7.8 Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 2/54 (3%) Query: 348 RLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAH 401 + V A P + G P P+ + + V+ +P + H Sbjct: 90 GALRGIAPVRAVPQ--PGYEEGEPLPSSMAAVAAVQADAVIRTQGDKPFVVAGH 141 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.141 0.415 Gapped Lambda K H 0.267 0.0496 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 4,976,724 Number of extensions: 246510 Number of successful extensions: 787 Number of sequences better than 10.0: 1 Number of HSP's gapped: 737 Number of HSP's successfully gapped: 67 Length of query: 559 Length of database: 5,693,230 Length adjustment: 97 Effective length of query: 462 Effective length of database: 3,341,562 Effective search space: 1543801644 Effective search space used: 1543801644 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (27.1 bits)