RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780869|ref|YP_003065282.1| beta-lactamase
domain-containing protein [Candidatus Liberibacter asiaticus str.
psy62]
(559 letters)
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease,
exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A
{Thermus thermophilus HB27} PDB: 3bk1_A*
Length = 562
Score = 357 bits (916), Expect = 4e-99
Identities = 175/560 (31%), Positives = 286/560 (51%), Gaps = 22/560 (3%)
Query: 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFI 61
+ + +PLGG+GEIG N+ ++ + + ++D G++FP++ +PGVDL+ P + ++
Sbjct: 13 PQDHVEIIPLGGMGEIGKNITVFRFR----DEIFVLDGGLAFPEEGMPGVDLLIPRVDYL 68
Query: 62 MKERKNLMAIFITHAHEDHYGALHDLWSFLH-----VPVYASPFAIGLLEAKRVYERVSK 116
++ R + A +TH HEDH G L L + VP+Y + +GLL K +
Sbjct: 69 IEHRHKIKAWVLTHGHEDHIGGLPFLLPMIFGKESPVPIYGARLTLGLLRGKLEEFGLRP 128
Query: 117 K-IPCISFQAGDKVDVGA-FSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAIL 174
D++ VG F+++ R+ HSIP+ +VIR+P+G IVHTGD+KLD I
Sbjct: 129 GAFNLKEISPDDRIQVGRYFTLDLFRMTHSIPDNSGVVIRTPIGTIVHTGDFKLDPTPID 188
Query: 175 GDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFS 234
G V+ + G EG+L L+ D+TNA R G SE I K + ++ A G V VTTF+
Sbjct: 189 GKVSHLAKVAQAGAEGVLLLIADATNAERPGYTPSEMEIAKELDRVIGRAPGRVFVTTFA 248
Query: 235 SSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQL 294
S + RI+S+I AE+ GRK+ + G S+ + +A+++G +K + E P Q+
Sbjct: 249 SHIHRIQSVIWAAEKYGRKVAMEGRSMLKFSRIALELGYLKVKDRLYTLEEVKDLPDHQV 308
Query: 295 IVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGV 354
+++ATGSQG+P S L +L+ + + DTVI SS IPGNE A+ + NRL G
Sbjct: 309 LILATGSQGQPMSVLHRLAFEGHAKMAIKPGDTVILSSSPIPGNEEAVNRVINRLYALGA 368
Query: 355 RVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIACVP 414
V+ H SGH +LK + P+ + HGE H + K LA
Sbjct: 369 YVLYPPTYKV-HASGHASQEELKLILNLTTPRFFLPWHGEVRHQMNFKWLAESMSRPPEK 427
Query: 415 PV--RNGKMLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVL 472
+ NG + RL + E + EV HG+ DG +G + +A RR ++ G + + L
Sbjct: 428 TLIGENGAVYRLTRETFEKVGEVPHGVLYVDGLGVGDITEEILADRRHMAEEGLVVITAL 487
Query: 473 LDNHYNIFGVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISS 532
V E+V G G ++ + + + + + + +K L+ +R+ I
Sbjct: 488 AGED----PVVEVVSRGFVK---AGERLLGEVRRMALEALKNGVR-EKKPLERIRDDIYY 539
Query: 533 ALRSLLKKVWGKKPLVTVFI 552
++ LKK G+ P++ +
Sbjct: 540 PVKKFLKKATGRDPMILPVV 559
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
processing; 2.59A {Methanosarcina mazei}
Length = 640
Score = 215 bits (548), Expect = 2e-56
Identities = 76/473 (16%), Positives = 152/473 (32%), Gaps = 63/473 (13%)
Query: 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFI 61
K++ + LGG E+G + L I+IDCGV+ D+ L P++ +
Sbjct: 180 KDQWVRVTALGGCKEVGRSCFLLSTPE----SRILIDCGVNVGSDENMTPYLYVPEVFPL 235
Query: 62 MKERKNLMAIFITHAHEDHYGALHDLWS-FLHVPVYASPFAIGLLEAK-----RVYERVS 115
+ A+ +THAH DH G + L+ PVY +P L+ V +
Sbjct: 236 ----NQIDAVIVTHAHLDHQGLVPLLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEG 291
Query: 116 KKIP------------CISFQAGDKVDVG-AFSIESVRVNHSIPETMALV-IRSPVGNIV 161
KKIP I + D+ + H + ++ I + N+V
Sbjct: 292 KKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVV 351
Query: 162 HTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIM 221
TGD+K + + +K I + NA + +EK ++ + + +
Sbjct: 352 FTGDYKYEKTRLFDPAVNK---FPRVETVISEATYGNANAFQPALKDAEKHLQMVVKNTI 408
Query: 222 KNAKGCVLVTTFSSSVSRIRSIIDIAEQIGR----KIVLLGSSLKRVVSVAIDVGIIKKD 277
+ V+ + +++ + + G + L G + A + D
Sbjct: 409 ERGGIAVIPAFAVGRSQEVMIVLEESIRKGLIPEVPVYLDGMIWEATAIHATHPEYLNND 468
Query: 278 -QLFLSDESFGLYPREQLIVIATGSQGE--------------PRSALAQLSRGEMRNVKL 322
+ + + + E + + + +
Sbjct: 469 LRKLIFQKGQNPFLSECFKPVDSHEARQKIIQNPQPCVILATSGMMNGGPVMEYFKAFAE 528
Query: 323 AEKDTVIFSSRAIPGNEVA--------IGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPN 374
++T++F G I + +++ E + SGH
Sbjct: 529 DPRNTLVFVGYQADGTIGRRIQKGWKEIPMTGKNGSTEMLKMNME-VQVVDGFSGHSDRR 587
Query: 375 DLKRMYQWI--RPQVLVAIHGEPLHLVAHKE-LALQEGIACVPPVRNGKMLRL 424
L + + RP+ + HG+ V + + I N + +RL
Sbjct: 588 QLMEYVKRMQPRPERVFTEHGDEKACVDLASSVYKKLKIETRAL-TNLETVRL 639
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP:
d.157.1.10
Length = 429
Score = 206 bits (524), Expect = 1e-53
Identities = 82/430 (19%), Positives = 144/430 (33%), Gaps = 61/430 (14%)
Query: 10 PLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSF------PKDDLPGV----------DL 53
G+ IG + Y I D G F P D + + DL
Sbjct: 11 FHSGILTIGGTVIEVAYKD----AHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDL 66
Query: 54 VFPDIT----FIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKR 109
P + + A+F++HAH DH ++ L VP+Y +L +
Sbjct: 67 YDPRLGYEYHGAEDKDYQHTAVFLSHAHLDHSRMINYLDP--AVPLYTLKETKMILNSLN 124
Query: 110 V---------YERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNI 160
+E + I D + VG S+E V V+H AL+IR+P I
Sbjct: 125 RKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTPDHFI 184
Query: 161 VHTGDWKLDD---DAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNI 217
+TGD +L + L + EG+ + + +SE+ + +++
Sbjct: 185 TYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPAQIAVVSEEDLVQHL 244
Query: 218 YDIM-KNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVA--IDVGII 274
+ +N + + ++V R II+ + R +VL + ++ V
Sbjct: 245 VRLELENPNRQITFNGYPANVERFAKIIEKS---PRTVVLEANMAALLLEVFGIEVRYYY 301
Query: 275 KKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRA 334
+ P + L+ T + + L E I S
Sbjct: 302 AESGKIPELNPALEIPYDTLLKDKTDYLWQVVNQ----------FDNLQEGSLYIHSDAQ 351
Query: 335 IPGNEVAIG-HIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHG 393
G+ + L ++ + + + SGH P DL ++ I PQVLV IH
Sbjct: 352 PLGDFDPQYRVFLDLLAKKDITFVR------LACSGHAIPEDLDKIIALIEPQVLVPIHT 405
Query: 394 EPLHLVAHKE 403
+ +
Sbjct: 406 LKPEKLENPY 415
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
family, KH domain, ribonuclease, ME beta-lactamase
superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
3af6_A*
Length = 651
Score = 200 bits (509), Expect = 8e-52
Identities = 85/481 (17%), Positives = 164/481 (34%), Gaps = 73/481 (15%)
Query: 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLP---GVDLVFPDI 58
K+ + LGG E+G + L ++++D GV+ + P P+
Sbjct: 185 KSRWIRITGLGGFREVGRSALLVQTD----ESFVLVDFGVNVAMLNDPYKAFPHFDAPEF 240
Query: 59 TFIMKERKNLMAIFITHAHEDHYGALHDLWS--FLHVPVYASPFAIGLLEAK-------- 108
++++E L AI ITHAH DH G L L+ P+Y +P L+
Sbjct: 241 QYVLREGL-LDAIIITHAHLDHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQ 299
Query: 109 -----------RVYERVSKKIPCISFQAGDKVDVGA-FSIESVRVNHSIPETMALV-IRS 155
R + V K + + G+ D+ + H + + + I +
Sbjct: 300 QSNGQDPLYRPRDIKEVIKHTITLDY--GEVRDISPDIRLTLHNAGHILGSAIVHLHIGN 357
Query: 156 PVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKK 215
+ NI TGD+K +L + + + + + +EK + +
Sbjct: 358 GLHNIAITGDFKFIPTRLLEP--ANAKFPRLETLVMESTYGGANDIQMPREE-AEKRLIE 414
Query: 216 NIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIK 275
I++ +K G VL+ +V R + ++ + E+ R + +
Sbjct: 415 VIHNTIKR-GGKVLIPAM--AVGRAQEVMMVLEEYARIGGIEVPIYLDGMIWEATAIHTA 471
Query: 276 ----------------KDQLFLSDESFGLYPREQLIVIATGSQGE-----PRSALAQLSR 314
FLS+ + + I ++ + S
Sbjct: 472 YPEYLSRRLREQIFKEGYNPFLSEIFHPVANSRERQDIIDSNEPAIIIASSGMLVGGPSV 531
Query: 315 GEMRNVKLAEKDTVIFSSRAIPGNE----VAIGHIKNRLVEQGVRVIAEDAECPVHV--- 367
+ + K+++IF S G + + E+G + + VH
Sbjct: 532 EYFKQLAPDPKNSIIFVSYQAEGTLGRQVQSGIREIPMVGEEGRTEVIK-VNMEVHTIDG 590
Query: 368 -SGHPYPNDLKRMYQWI--RPQVLVAIHGEPLHLVAHKE-LALQEGIACVPPVRNGKMLR 423
SGH +L + RP+ ++ +HGEP + + + GI+ P N +R
Sbjct: 591 FSGHADRRELMNYVAKVRPRPERIITVHGEPQKCLDLATSIHRKFGISTRAP-NNLDTIR 649
Query: 424 L 424
L
Sbjct: 650 L 650
>2zdf_A Metallo-beta-lactamase superfamily protein; metallo beta lactmase
fold, structural genomics, NPPSFA; HET: FLC; 2.50A
{Thermus thermophilus} PDB: 3idz_A* 2dkf_A 2zdd_A*
3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Length = 431
Score = 164 bits (416), Expect = 4e-41
Identities = 77/454 (16%), Positives = 151/454 (33%), Gaps = 62/454 (13%)
Query: 8 FLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKN 67
+P G E+ + L G + +++DCG+ K++ F KE
Sbjct: 3 IVPFGAAREVTGSAHLLLAGG----RRVLLDCGMFQGKEEARN----HAPFGFDPKEVD- 53
Query: 68 LMAIFITHAHEDHYGALHDLW-SFLHVPVYASPFAIGLLEAKRVYERVSKKIPCIS---- 122
A+ +THAH DH G L L+ PVYA+ + L+E P
Sbjct: 54 --AVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDV 111
Query: 123 ---------FQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAI 173
+ G+ + +GA S+ + H +P + +V + +V++GD + +
Sbjct: 112 EEALGHLRPLEYGEWLRLGALSLAFGQAGH-LPGSAFVVAQGEGRTLVYSGDLGNREKDV 170
Query: 174 LGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTF 233
L D + ++ + + + + + + G VL+ TF
Sbjct: 171 LPDPSLPP------LADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQ-GGKVLIPTF 223
Query: 234 SSSVSRIRSIIDIAEQIGRK-----IVLLGSSLKRVVSVA----------IDVGIIKKDQ 278
+V R + I+ + G + I L RV+S+ + ++
Sbjct: 224 --AVERAQEILYVLYTHGHRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKN 281
Query: 279 LFLSDESFGLYPREQLIVIATGSQGE-----PRSALAQLSRGEMRNVKLAEKDTVIFSSR 333
F + E + +++ ++ ++F
Sbjct: 282 PFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGY 341
Query: 334 AIPG---NEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVA 390
G E+ R++ + V + A GH ++L Q +V
Sbjct: 342 QPQGGLGAEIIARPPAVRILGEEVPLRAS-VHTLGGFQGHAGQDELLDWLQ--GEPRVVL 398
Query: 391 IHGEPLHLVAHKELALQEGIACVPPVRNGKMLRL 424
+HGE L+A +L G R G+ + +
Sbjct: 399 VHGEEEKLLALGKLLALRGQEVSLA-RFGEGVPV 431
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J
recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10
PDB: 2i7v_A
Length = 459
Score = 145 bits (365), Expect = 3e-35
Identities = 66/467 (14%), Positives = 144/467 (30%), Gaps = 62/467 (13%)
Query: 2 KNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFI 61
++++L+ PLG E+G + + + + IM+DCG+ + + P I I
Sbjct: 8 ESDQLLIRPLGAGQEVGRSCIILEFKG----RKIMLDCGIHPGLEGMD----ALPYIDLI 59
Query: 62 MKERKNLMAIFITHAHEDHYGALHDLWS--FLHVPVYASPFAIGLLEAK-RVYERVSKKI 118
+ + + I+H H DH GAL + + + Y +VS
Sbjct: 60 --DPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNIS 117
Query: 119 PCISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVT 178
++ IE++ + G+++ + ++ + T
Sbjct: 118 ADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYT 177
Query: 179 DKDSL--------CAIGNEGILALMCDSTNAMREGTCISEK-GIKKNIYDIMKNAKGCVL 229
S I N L+ +ST E+ N + N G L
Sbjct: 178 GDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGL 237
Query: 230 VTTFSSSVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDES---- 285
+ F+ ++ ++ + E L + S+A + + + ++
Sbjct: 238 IPVFALGRAQ-ELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQ 296
Query: 286 ------------------FGLYPREQLIVIATGSQGEPRSALAQLS--RGEMRNVKLAEK 325
+V+A+ + + + RN +
Sbjct: 297 ININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAG 356
Query: 326 DTVIFS-SRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIR 384
V + ++ I I + + + + V + S H + ++
Sbjct: 357 YCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDY------ISFSAHTDYQQTSEFIRALK 410
Query: 385 PQVLVAIHGEPLHLVAHKELALQE-------GIACVPPVRNGKMLRL 424
P ++ +HGE + K ++E I P RN + + L
Sbjct: 411 PPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNP-RNTEAVTL 456
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN;
2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3
PDB: 1ycf_A* 1ych_A*
Length = 398
Score = 99.5 bits (247), Expect = 2e-21
Identities = 51/374 (13%), Positives = 107/374 (28%), Gaps = 50/374 (13%)
Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS-FL 91
K ++D P + + + I K L + + H DH GA +
Sbjct: 45 KTALVDTV------YEPFKEELIAKLKQIKDPVK-LDYLVVNHTESDHAGAFPAIMELCP 97
Query: 92 HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMAL 151
V + A L+A + G V +G S+ + ++
Sbjct: 98 DAHVLCTQRAFDSLKA----HYSHIDFNYTIVKTGTSVSLGKRSLT-FIEAPMLHWPDSM 152
Query: 152 VIRSPVGNIVHTGDWKLD---DDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGT-- 206
P ++ D D D + + ++ +N + +
Sbjct: 153 FTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILMPFSNLITKKLDE 212
Query: 207 ----------------CISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQI 250
I K + I + A+G + + S +A +
Sbjct: 213 IQKINLAIKTIAPSHGIIWRKDPGRIIEAYARWAEGQGKAKAVIAYDTMWLSTEKMAHAL 272
Query: 251 GRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALA 310
+V G +V + K +D + + +++ + + +
Sbjct: 273 MDGLVAGG----------CEVKLFKLSVSDRNDVIKEI-LDARAVLVGSPTINNDILPVV 321
Query: 311 QLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGH 370
++ ++ K + F + A ++ RL + +IAE V
Sbjct: 322 SPLLDDLVGLRPKNKVGLAFGA--YGWGGGAQKILEERLKAAKIELIAEP---GPTVQWV 376
Query: 371 PYPNDLKRMYQWIR 384
P DL+R Y+ R
Sbjct: 377 PRGEDLQRCYELGR 390
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre,
flavoproteins, lactamase-fold; HET: FMN; 2.5A
{Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Length = 402
Score = 89.1 bits (220), Expect = 2e-18
Identities = 41/365 (11%), Positives = 108/365 (29%), Gaps = 31/365 (8%)
Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS-FL 91
K + D + I ++ +K + + I H DH GAL L
Sbjct: 44 KTTLFDTV------KAEYKGELLCGIASVIDPKK-IDYLVIQHLELDHAGALPALIEACQ 96
Query: 92 HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMAL 151
++ S +E+ Y K P + G+ + +G ++ + ++
Sbjct: 97 PEKIFTSSLGQKAMESHFHY----KDWPVQVVKHGETLSLGKRTVTFYET-RMLHWPDSM 151
Query: 152 VIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEK 211
V ++ + D + A +D+ + + + E
Sbjct: 152 VSWFADEKVLISNDIFGQNIAASERFSDQIPVHTLERAMREYYANIVNPYAPQTLKAIET 211
Query: 212 GIKKNI-YDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGSS-------LKR 263
+ + + + G + + + + + ++ K+V+ S + R
Sbjct: 212 LVGAGVAPEFICPDHGVIFRGADQCTFAVQKYVEYAEQKPTNKVVIFYDSMWHSTEKMAR 271
Query: 264 VVSVAIDVGIIKKDQLFLSD----ESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRN 319
V++ + ++ + +++ + + + ++
Sbjct: 272 VLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHNNGILPYVAGTLQYIKG 331
Query: 320 VKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRM 379
++ K F S + + + L G + A PV V P D +++
Sbjct: 332 LRPQNKIGGAFGS--FGWSGESTKVLAEWLTGMGFDMPAT----PVKVKNVPTHADYEQL 385
Query: 380 YQWIR 384
+
Sbjct: 386 KTMAQ 390
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 61.7 bits (149), Expect = 4e-10
Identities = 40/365 (10%), Positives = 93/365 (25%), Gaps = 80/365 (21%)
Query: 35 IMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS----- 89
++ID G + P I + K + I ++ + GA L+
Sbjct: 27 LLIDPGWN------PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSH 80
Query: 90 -FLHVPVYASPFAIGLLE------AKRVYERVSKKIP-------------CISFQAGDKV 129
+ VYA+ I L + + V
Sbjct: 81 FISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLV 140
Query: 130 DV----GAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCA 185
D+ ++ + ++ I + +V+ W D IL + D+
Sbjct: 141 DLRSRYDGLTLLAYNAGVCPGGSI-WCISTYSEKLVYAKRWNHTRDNILNAASILDATGK 199
Query: 186 IGNEGIL--ALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSI 243
+ + A++ I K+ ++ G V++ + +
Sbjct: 200 PLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVD--MSGKFLDL 257
Query: 244 IDIAEQIGRK-----------IVLLGSSLKRVVSVA--------------------IDVG 272
++ + +++L + R ++ A
Sbjct: 258 FTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPF 317
Query: 273 IIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSS 332
I ++ YP I + + ++ EK T+I +
Sbjct: 318 EIGSRIKIIAPNELSKYP-GSKICFVSEVGALINEVIIKVGNS--------EKTTLILTK 368
Query: 333 RAIPG 337
+
Sbjct: 369 PSFEC 373
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine
like domain, oxidoreductase; HET: FMN; 1.70A
{Methanothermobacterthermautotrophicus} PDB: 2ohi_A*
2ohj_A*
Length = 404
Score = 54.4 bits (130), Expect = 7e-08
Identities = 57/372 (15%), Positives = 123/372 (33%), Gaps = 44/372 (11%)
Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKE--RKNLMAIFITHAHEDHYGALHDLWS- 89
+ID D + + +++ + + I H +DH G L +L
Sbjct: 45 GVALIDNS------YPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRR 98
Query: 90 FLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETM 149
F P+Y + A+ L K + + + + + H P++M
Sbjct: 99 FPEAPIYCTEVAVKGLL-KHYPSLREAEFMTVKTGDVLDLGGKTLTFLETPLLHW-PDSM 156
Query: 150 ALVIRSPVGNIVHTGDWKLD---DDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGT 206
++ I+ + D L + L + L+ + + +
Sbjct: 157 FTLL--DEDGILFSNDAFGQHLCCPQRLDREIPEYILMDAARKFYANLITPLSKLVLKKF 214
Query: 207 C-ISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL------GS 259
+ E G+ + I I + G + ++ + I + A + + V + GS
Sbjct: 215 DEVKELGLLERIQMIA-PSHGQI----WTDPMKIIEAYTGWATGMVDERVTVIYDTMHGS 269
Query: 260 SLKRVVSVA-------IDVGIIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQL 312
+ K ++A +DV + + S+ + + + A EP ++ L
Sbjct: 270 TRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSVGDL 329
Query: 313 --SRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGH 370
++ + + ++F S + GN A G +K L E G V V
Sbjct: 330 LMYLRGLKFNRTLTRKALVFGS--MGGNGGATGTMKELLAEAGFDVAC-----EEEVYYV 382
Query: 371 PYPNDLKRMYQW 382
P ++L ++
Sbjct: 383 PTGDELDACFEA 394
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein,
SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A
2q0i_A 3dh8_A*
Length = 303
Score = 53.2 bits (127), Expect = 2e-07
Identities = 31/181 (17%), Positives = 61/181 (33%), Gaps = 34/181 (18%)
Query: 7 VFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERK 66
+ L +G++ + + L G W +++ G+S +LV+ D+ + +
Sbjct: 12 LDDDLCLLGDVQVPVFLLRLGE---ASWALVEGGIS------RDAELVWADLCRWVADPS 62
Query: 67 NLMAIFITHAHEDHYGALHD-LWSFLHVPVYASPFAIGLLEAKRVYERVSK--------- 116
+ ITH H DH G L +V V AS +++ V +
Sbjct: 63 QVHYWLITHKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAE 122
Query: 117 ----------KIPCISFQAGDKVDVGAFSIESVRVN--HSIPETMALVIRSPVGNIVHTG 164
+P + G+ +++G V HS + + + G
Sbjct: 123 QRLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHS-DDHVVFYD--VRRRRLFCG 179
Query: 165 D 165
D
Sbjct: 180 D 180
>2q0i_A Quinolone signal response protein; quorum sensing, pseudomonas
quinolone signal, PQS, metall- beta-lactamase, iron,
phosphodiesterase; 1.57A {Pseudomonas aeruginosa} SCOP:
d.157.1.14 PDB: 2q0j_A 3dh8_A*
Length = 303
Score = 52.7 bits (125), Expect = 2e-07
Identities = 30/179 (16%), Positives = 63/179 (35%), Gaps = 17/179 (9%)
Query: 7 VFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERK 66
+ L +G++ + + L G W +++ G+S +LV+ D+ + +
Sbjct: 12 LDDDLCLLGDVQVPVFLLRLGE---ASWALVEGGIS------RDAELVWADLCRWVADPS 62
Query: 67 NLMAIFITHAHEDHYGALHD-LWSFLHVPVYASPFAIGLLEAK---RVYERVSKKIPCIS 122
+ ITH H DH G L +V V AS +++ RV ER+++++
Sbjct: 63 QVHYWLITHKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAE 122
Query: 123 FQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKL----DDDAILGDV 177
+ + A + +V + ++ + GD
Sbjct: 123 QRLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDA 181
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two
monomers PER assymmetric UNIT., hydrolase; HET: GOL;
1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB:
1jt1_A* 1l9y_A
Length = 263
Score = 52.6 bits (125), Expect = 3e-07
Identities = 20/200 (10%), Positives = 50/200 (25%), Gaps = 23/200 (11%)
Query: 14 VGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFI 73
VG + L I+I+ + V ++ I + + + + I
Sbjct: 20 VGTDDLASYLIVTPR----GNILINSDLE------ANVPMIKASIKKLGFKFSDTKILLI 69
Query: 74 THAHEDHYGALHDLWSFLHVPVYASPFAIGLLE---------AKRVYERVSKKIPCISFQ 124
+HAH DH + + ++ A ++
Sbjct: 70 SHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLH 129
Query: 125 AGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLC 184
G++V++G + + + + + + + +
Sbjct: 130 DGERVELGGTVLTAHLTPGHTRGCTTWTM--KLKDHGKQYQAVIIGSIGVNP--GYKLVD 185
Query: 185 AIGNEGILALMCDSTNAMRE 204
I I S +
Sbjct: 186 NITYPKIAEDYKHSIKVLES 205
>2whg_A VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BETA-alpha
fold; HET: FLC; 1.90A {Pseudomonas aeruginosa} PDB:
2wrs_A* 1ko3_A 1ko2_A
Length = 230
Score = 51.9 bits (124), Expect = 3e-07
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 17/142 (11%)
Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER--KNLMAIFITHAHEDHYGALHDLWSF 90
+ ++ID + ++++ + TH H+D G + D+
Sbjct: 48 ELLLIDTAWGAKN---------TAALLAEIEKQIGLPVTRAVSTHFHDDRVGGV-DVLRA 97
Query: 91 LHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMA 150
V YASP L EA+ + +GD V G + HS + +
Sbjct: 98 AGVATYASPSTRRLAEAE--GNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHS-TDNLV 154
Query: 151 LVIRSPVGNIVHTGDWKLDDDA 172
+ + P N+++ G +
Sbjct: 155 VYV--PSANVLYGGCAVHELSR 174
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella
enterica}
Length = 210
Score = 51.5 bits (123), Expect = 5e-07
Identities = 28/162 (17%), Positives = 44/162 (27%), Gaps = 20/162 (12%)
Query: 27 GSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHD 86
+R ++D G + LM I +TH H DH GA +
Sbjct: 19 WCEQTRLAALVDPGGDAE-----------KIKQEVDASGVTLMQILLTHGHLDHVGAASE 67
Query: 87 LWSFLHVPVYASPFAIGLLEAKRV-------YERVSKKIPCISFQAGDKVDVGAFSIESV 139
L VPV + P GD+V VG +++ +
Sbjct: 68 LAQHYGVPVIGPEKEDEFWLQGLPAQSRMFGLDECQPLTPDRWLNDGDRVSVGNVTLQVL 127
Query: 140 RVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKD 181
P + ++ +GD D D
Sbjct: 128 HCPGHTPGHVVFFD--EQSQLLISGDVIFKGGVGRSDFPRGD 167
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 51.1 bits (122), Expect = 7e-07
Identities = 66/425 (15%), Positives = 108/425 (25%), Gaps = 206/425 (48%)
Query: 7 VFLPLGGVGEIGM-NMALYGYGSPSSRKWIMIDC---GVSFPKDDLPGVDLVFPDITFIM 62
+ PL IG+ +A Y ++ G + PG +L
Sbjct: 236 ISCPL-----IGVIQLAHY-----------VVTAKLLGFT------PG-EL--------- 263
Query: 63 KERKNL-----------MAIFITHAH--EDHYGALHDLWSFLHVPVYASPFAIGLLEAKR 109
R L A+ I E + ++ + L F IG+
Sbjct: 264 --RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL--------FFIGV-RCYE 312
Query: 110 VYERVSKKIPCISFQAGDKVDVGAFSIE-------SVR-------------VNHSIPET- 148
Y S +P + D ++ E S+ N +P
Sbjct: 313 AYPNTS--LPPSILE--DSLENN----EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 149 ---MALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREG 205
++L + N+V +G + SL L L +R+
Sbjct: 365 QVEISL-VNGA-KNLVVSGPPQ--------------SLYG------LNL------TLRK- 395
Query: 206 TCISEKGIKKNIYDIMKNAKGC------------VLVTTF--------SSSVSRIRSII- 244
K G F S + +I
Sbjct: 396 ---------------AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 245 -DIAEQIGRKIVLLGSSLKRVVSVAIDV-----GIIKKDQLFLSDESFGLYPREQLI-VI 297
D+ + + ++ I V G D L S + R ++ I
Sbjct: 441 KDLVKN---NVSFNAKDIQ------IPVYDTFDG---SD---LRVLSGSISER--IVDCI 483
Query: 298 ATGSQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAI----PGNEVAIGHIKNRLVE-Q 352
P VK E T F + I PG +G + +R +
Sbjct: 484 IR----LP--------------VKW-ETTTQ-FKATHILDFGPGGASGLGVLTHRNKDGT 523
Query: 353 GVRVI 357
GVRVI
Sbjct: 524 GVRVI 528
Score = 49.9 bits (119), Expect = 1e-06
Identities = 106/617 (17%), Positives = 182/617 (29%), Gaps = 224/617 (36%)
Query: 26 YGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALH 85
+GS ++ + P + F K L A +D
Sbjct: 13 HGS--------LEHVLLVPTASFFIAS-QLQE-QFN----KILPEPTEGFAADDEPTTPA 58
Query: 86 DLW-SFL-HVPVYASPFAIG-----LLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIES 138
+L FL +V P +G L +E + G+ D+ A
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN--------CYLEGN--DIHAL---- 104
Query: 139 VRVNHSIPETMAL----VIRSPVGNIVHTGD--WKLDDDAILGDVTDKD-SLCAI-GNEG 190
+T + +I++ + + K + A+ V + + L AI G +G
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 191 ILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSR-----IRSIID 245
+T+ E +++Y VLV + IR+ +D
Sbjct: 165 -------NTD-----DYFEEL---RDLYQTYH-----VLVGDLIKFSAETLSELIRTTLD 204
Query: 246 IAEQIGRKIVLLGSSLKR---------VVSVAIDVGIIKKDQL---FLSDESFGLYPRE- 292
+ + + +L L+ ++S+ I +I QL ++ + G P E
Sbjct: 205 AEKVFTQGLNIL-EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 293 -QLIVIATG-SQG-EPRSALAQLSRGE--MRNVKLAEKDTVIFSSRAIPGNEVAIGHIKN 347
+ ATG SQG A+A+ E +V+ A TV+F I
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI--TVLF-------------FI-- 306
Query: 348 RLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVL---VAIHGE--PLHLVAHK 402
GVR YPN + P +L + + E P +++
Sbjct: 307 -----GVR------------CYEAYPN------TSLPPSILEDSLE-NNEGVPSPMLSIS 342
Query: 403 EL---ALQEGI----ACVPPVR-------NGKMLRLFPDPIEIIDEVV-------HGLFL 441
L +Q+ + + +P + NG + VV +GL L
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNG------AKNL-----VVSGPPQSLYGLNL 391
Query: 442 KDGFL--IGKFADLGIAK----RRQLSFVGH--LSVNVLLDNHY------NI---FGVPE 484
L + L ++ R+L F + L V +H I
Sbjct: 392 T---LRKAKAPSGLDQSRIPFSERKLKFS-NRFLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 485 IV----DIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISSALRSLLKK 540
+ DI IP YD G D LR S ++
Sbjct: 448 VSFNAKDIQIPVYDTFDGS--------------D-----------LRVLSGSISERIVDC 482
Query: 541 V------WGKKPLVTVF 551
+ W T F
Sbjct: 483 IIRLPVKW---ETTTQF 496
Score = 49.6 bits (118), Expect = 2e-06
Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 62/181 (34%)
Query: 290 PREQLIVIA--TGSQ-----GEPRSALAQLSRGEMRNVKL-AEKDT--VIFSSRA----- 334
P + + I+ G++ G P+S L L+ +R K + D + FS R
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQS-LYGLNL-TLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 335 --IPGNEVAIG---H----------IKNRLVEQGVRVIAEDAECPVH--VSGHPYPNDLK 377
+P + H I LV+ V A+D + PV+ G +DL+
Sbjct: 419 RFLP-----VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG----SDLR 469
Query: 378 RMYQWIRPQVLVAIHGEPLHLVAHKELALQE-----------GIACVPPV--RN--GKML 422
+ I +++ I P+ E Q G + + + RN G +
Sbjct: 470 VLSGSISERIVDCIIRLPVKW----ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV 525
Query: 423 R 423
R
Sbjct: 526 R 526
Score = 27.2 bits (60), Expect = 9.6
Identities = 39/201 (19%), Positives = 77/201 (38%), Gaps = 60/201 (29%)
Query: 130 DVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTG--------------------DWKLD 169
D FSI + +VI +PV +H G D KL
Sbjct: 1655 DTYGFSI------------LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 170 DDAILGDVTDKDSLCAIGNE-GILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCV 228
+ I ++ + + +E G+L+ +T + + EK ++ +K +KG +
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLS----ATQFTQPALTLMEKA----AFEDLK-SKGLI 1753
Query: 229 LV-TTFSS-SVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGI-----IKKDQLFL 281
TF+ S+ ++ +A+ + S++ +V V G+ + +D+L
Sbjct: 1754 PADATFAGHSLGEYAALASLADVM---------SIESLVEVVFYRGMTMQVAVPRDELGR 1804
Query: 282 SDESFGLYPREQLIVIATGSQ 302
S+ +G+ V A+ SQ
Sbjct: 1805 SN--YGMIAINPGRVAASFSQ 1823
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor,
succinic acid inhibitor, hydrolase; HET: BDS; 1.80A
{Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A*
1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
Length = 228
Score = 49.4 bits (117), Expect = 2e-06
Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 21/159 (13%)
Query: 8 FLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKN 67
F + G G + + + + + +ID + +T+ ++
Sbjct: 22 FEEVNGWGVVPKHGLVVL----VNAEAYLIDTPFT--------AKDTEKLVTWFVERGYK 69
Query: 68 LMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGD 127
+ +H H D G + L S +P YAS LL+ + +G
Sbjct: 70 IKGSISSHFHSDSTGGIEWLNSR-SIPTYASELTNELLKKDGKV-------QATNSFSGV 121
Query: 128 KVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDW 166
+ IE V+ P I+ G +
Sbjct: 122 NYWLVKNKIEVFYPGPGHTPDNV-VVWLPERKILFGGCF 159
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone
signal, metallo-beta-lactamase FOL conserved
hypothetical protein; HET: EPE; 1.80A {Sulfolobus
tokodaii}
Length = 261
Score = 49.3 bits (117), Expect = 2e-06
Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 39/157 (24%)
Query: 30 SSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS 89
+ +MID GVS D +D L I +TH H DH G L +L
Sbjct: 27 GEKLTVMIDAGVSNSIADFSFLD--------------KLDYIVLTHLHIDHIGLLPELLQ 72
Query: 90 FLHVPVYASPFAIGLLEAKRVYERVSKKI---------------------PCISFQAGDK 128
V L ++ +++++ I + ++
Sbjct: 73 VYKAKVLVKSGFKKYLTSEDGLKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNEE 132
Query: 129 VDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGD 165
D+G + + + M++++ + + TGD
Sbjct: 133 FDLGGYRMRLIYTPGHARHHMSVLV----DDFLFTGD 165
>1xto_A Coenzyme PQQ synthesis protein B; alpha-beta protein, northeast
structural genomics consortium, NESG, protein structure
initiative; 2.80A {Pseudomonas putida KT2440} SCOP:
d.157.1.6
Length = 311
Score = 47.1 bits (110), Expect = 1e-05
Identities = 25/234 (10%), Positives = 62/234 (26%), Gaps = 23/234 (9%)
Query: 32 RKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER-KNLMAIFITHAHEDHYGALHDLWSF 90
WI+ + D+ F + R + AI + + DH L L
Sbjct: 49 VHWILCNAS-----PDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLREG 103
Query: 91 LHVPVYASPFAIGLLEAKRVYERVSKKI-------PCISFQAGDKVDVGAFSIESVRVNH 143
V+ + L + + +
Sbjct: 104 CPHQVWCTDMVHQDLTTGFPLFNMLSHWNGGLQWNRIELEGSFVIDACPNLKFTPFPLRS 163
Query: 144 SIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMR 203
+ P G+ + + +D G +E +LA+M + +
Sbjct: 164 AAPPYSPHRFDPHPGDNLGL----MVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLLV 219
Query: 204 EGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLL 257
+GT + +++ + + + ++++ + R+ +L
Sbjct: 220 DGTLWEDDEMQRRGVGTRTGRE------MGHLAQNGPGGMLEVLDGFPRQRKVL 267
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ
biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas
putida KT2440} PDB: 1xto_A
Length = 321
Score = 46.8 bits (110), Expect = 1e-05
Identities = 19/178 (10%), Positives = 36/178 (20%), Gaps = 14/178 (7%)
Query: 32 RKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFL 91
WI+ + D + P + AI + + DH L L
Sbjct: 51 VHWILCNAS----PDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLREGC 106
Query: 92 HVPVYASPFAIGLLEAKRVYERVSKKI-------PCISFQAGDKVDVGAFSIESVRVNHS 144
V+ + L + + + +
Sbjct: 107 PHQVWCTDMVHQDLTTGFPLFNMLSHWNGGLQWNRIELEGSFVIDACPNLKFTPFPLRSA 166
Query: 145 IPETMALVIRSPVGN---IVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDST 199
P G+ ++ + D G L+ D T
Sbjct: 167 APPYSPHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLLVDGT 224
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline binding
protein; PCE, hydrolase; HET: PC BTB; 1.92A
{Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8
PDB: 1wra_A*
Length = 547
Score = 45.6 bits (107), Expect = 3e-05
Identities = 29/189 (15%), Positives = 53/189 (28%), Gaps = 43/189 (22%)
Query: 29 PSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER---------------KNLMAIFI 73
S+ + M+D G + D + + + + L I +
Sbjct: 24 ESNGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLDFILV 83
Query: 74 THAHEDHYGALHDLWSFLHV-PVYASPFA-------IGLLEAKRVYERVSK-------KI 118
TH H DH G + +L S V VY ++ L + Y++V + +
Sbjct: 84 THTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTATETGVSV 143
Query: 119 PCISFQAGDKVDVGAFSIESVRVNHSIPET-------------MALVIRSPVGNIVHTGD 165
Q G I+ + + + V++ I GD
Sbjct: 144 IQNITQGDAHFQFGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGD 203
Query: 166 WKLDDDAIL 174
A
Sbjct: 204 LDNVHGAED 212
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 1.97A {Thermotoga maritima}
SCOP: d.157.1.7 PDB: 1ww1_A
Length = 280
Score = 44.0 bits (102), Expect = 9e-05
Identities = 33/262 (12%), Positives = 64/262 (24%), Gaps = 45/262 (17%)
Query: 21 MALYGYGSPSSRKW-------IMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFI 73
M + G+ W I+ D G GV T + + +F+
Sbjct: 1 MNIIGFSKALFSTWIYYSPERILFDAG--------EGV------STTLGSKVYAFKYVFL 46
Query: 74 THAHEDHYGALHDLWS-------------FLHVPVYASPFAIGLLEAKRVYERVSKKIPC 120
TH H DH L + + + P KR +
Sbjct: 47 THGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNV 106
Query: 121 ISFQAG-----DKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILG 175
+ G ++ R H E V + LD I
Sbjct: 107 HPLKEGERVFLRNAGGFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEI-- 164
Query: 176 DVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSS 235
+ G + + + + + + ++
Sbjct: 165 ----SRLVKEKGRDFVTEEYHKKVLTISGDSLALDPEEIRGTELLIHECTFLDARDRRYK 220
Query: 236 SVSRIRSIIDIAEQIGRKIVLL 257
+ + I +++ + G K V+L
Sbjct: 221 NHAAIDEVMESVKAAGVKKVIL 242
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance,
hydrolase; 1.65A {Chryseobacterium indologenes}
Length = 219
Score = 42.3 bits (99), Expect = 3e-04
Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 19/138 (13%)
Query: 30 SSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER-KNLMAIFITHAHEDHYGALHDLW 88
+ + ++ D K + + I K ++A+F TH+H+D G L
Sbjct: 38 TKKGVVLFDVPWE--KVQYQSL------MDTIKKRHNLPVVAVFATHSHDDRAGDLSFFN 89
Query: 89 SFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHS-IPE 147
+ + YA+ + ++ K + G +G + +
Sbjct: 90 N-KGIKTYATA------KTNEFLKKDGKATSTEIIKTGKPYRIGGEEFVVDFLGEGHTAD 142
Query: 148 TMALVIRSPVGNIVHTGD 165
+ + P N++ G
Sbjct: 143 NVVVWF--PKYNVLDGGC 158
>1ko3_A VIM-2 metallo-beta-lactamase; alpha-beta/BETA-alpha fold,
hydrolase; 1.91A {Pseudomonas aeruginosa} SCOP:
d.157.1.1 PDB: 1ko2_A
Length = 230
Score = 41.4 bits (96), Expect = 5e-04
Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 15/144 (10%)
Query: 30 SSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER-KNLMAIFITHAHEDHYGALHDLW 88
+ ++ID + I K+ + TH H+D G + D+
Sbjct: 45 DGDELLLIDTAWGAKNTA--------ALLAEIEKQIGLPVTRAVSTHFHDDRVGGV-DVL 95
Query: 89 SFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPET 148
V YASP L E + +GD V G + HS T
Sbjct: 96 RAAGVATYASPSTRRLAE--VEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHS---T 150
Query: 149 MALVIRSPVGNIVHTGDWKLDDDA 172
LV+ P ++++ G +
Sbjct: 151 DNLVVYVPSASVLYGGCAIYELSR 174
>1ztc_A Hypothetical protein TM0894; structural genomics, PSI, protein
structure initiative, joint center for structural
genomics, JCSG; HET: MSE; 2.10A {Thermotoga maritima}
SCOP: d.157.1.11
Length = 221
Score = 41.5 bits (96), Expect = 5e-04
Identities = 28/169 (16%), Positives = 53/169 (31%), Gaps = 15/169 (8%)
Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS--- 89
+ I+ID G +D + + + ++ + TH H DH +
Sbjct: 45 RRIIIDPGNL------SSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFENATF 98
Query: 90 FLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETM 149
++H + R+Y +V + G++ H+
Sbjct: 99 YVHEVYKTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDEKVKVFHTPWHAREHLS 158
Query: 150 ALVIRSPVGNIVHTGD------WKLDDDAILGDVTDKDSLCAIGNEGIL 192
L+ G ++ TGD D G V K+ L +G +L
Sbjct: 159 FLLDTENAGRVLITGDITPNRLSYYDIIKGYGSVQVKNFLDRVGRIDLL 207
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold.,
hydrolase; HET: MCO; 1.50A {Elizabethkingia
meningoseptica} SCOP: d.157.1.1
Length = 223
Score = 40.6 bits (94), Expect = 9e-04
Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 17/141 (12%)
Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER-KNLMAIFITHAHEDHYGALHDLWSFL 91
++IDC G D I K+ K ++ TH+H+D G L + + +
Sbjct: 37 GVVVIDCP--------WGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGL-EYFGKI 87
Query: 92 HVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMAL 151
Y++ + + +K +F VG + +
Sbjct: 88 GAKTYSTKM------TDSILAKENKPRAQYTFDNNKSFKVGKSEFQVYYPGKGHTADN-V 140
Query: 152 VIRSPVGNIVHTGDWKLDDDA 172
V+ P ++ G D+
Sbjct: 141 VVWFPKEKVLVGGCIIKSADS 161
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain,
hydrolase; HET: SPD; 1.80A {Leishmania infantum} PDB:
2p1e_A*
Length = 311
Score = 40.3 bits (93), Expect = 0.001
Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 14/151 (9%)
Query: 24 YGY--GSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKN--LMAIFITHAHED 79
+ Y ++ +D D P + + + I TH H D
Sbjct: 41 FSYLINDHTTHTLAAVDVNA----DYKPILTYIEEHLKQQGNADVTYTFSTILSTHKHWD 96
Query: 80 HYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESV 139
H G L + L P + + + GD+V VG S+E +
Sbjct: 97 HSGGNAKLKAELEAMNSTVPVVVVGGANDSIP------AVTKPVREGDRVQVGDLSVEVI 150
Query: 140 RVNHSIPETMALVIRSPVGNIVHTGDWKLDD 170
+ ++ P + D
Sbjct: 151 DAPCHTRGHVLYKVQHPQHPNDGVALFTGDT 181
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like,
oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Length = 414
Score = 40.1 bits (93), Expect = 0.001
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 66 KNLMAIFITHAHEDHYGALHDLWS-FLHVPVYASPFAIGLLEA 107
+ + + HA DH +L D + F + + L+
Sbjct: 76 DKIKYVVMNHAEGDHASSLKDHYHKFTNATFVCTKKCQEHLKI 118
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT;
1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A
1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A
3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A
2bfz_A 2bg6_A 2bga_A ...
Length = 227
Score = 38.7 bits (89), Expect = 0.003
Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 15/133 (11%)
Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLH 92
+++D K +++V K +K + + ITHAH D G + L
Sbjct: 51 GLVLVDSSWD-DKLTKELIEMV------EKKFQKRVTDVIITHAHADRIGGIKTLKER-G 102
Query: 93 VPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMALV 152
+ +++ L + E P Q + G +E+ E +V
Sbjct: 103 IKAHSTALTAELAKKNGYEE------PLGDLQTVTNLKFGNMKVETFYPGKGHTEDN-IV 155
Query: 153 IRSPVGNIVHTGD 165
+ P NI+ G
Sbjct: 156 VWLPQYNILVGGC 168
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase);
metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens}
SCOP: d.157.1.2 PDB: 1qh3_A*
Length = 260
Score = 38.6 bits (89), Expect = 0.004
Identities = 21/147 (14%), Positives = 36/147 (24%), Gaps = 30/147 (20%)
Query: 24 YGY--GSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHY 81
Y Y +++ ++D P + K L + TH H DH
Sbjct: 13 YMYLVIDDETKEAAIVD----------PVQPQ--KVVDAARKHGVKLTTVLTTHHHWDHA 60
Query: 82 GALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV 141
G L + VG+ +++ +
Sbjct: 61 GGNEKLVKLESGLKVYGGDD-------------RIGALTHKITHLSTLQVGSLNVKCLAT 107
Query: 142 NHSIPETMALVIRSPVG---NIVHTGD 165
+ + P G V TGD
Sbjct: 108 PCHTSGHICYFVSKPGGSEPPAVFTGD 134
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP}
SCOP: d.157.1.5
Length = 331
Score = 38.3 bits (88), Expect = 0.005
Identities = 22/151 (14%), Positives = 44/151 (29%), Gaps = 20/151 (13%)
Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLH 92
K +++D G P + + ++ + + + I+ITH H DH G L
Sbjct: 107 KLVLVDTG--AAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQLAF 164
Query: 93 VPVY------------------ASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAF 134
+P K ++ + F+
Sbjct: 165 PNAVVRADQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFSGNTDLVP 224
Query: 135 SIESVRVNHSIPETMALVIRSPVGNIVHTGD 165
I+++ + P V+ S + GD
Sbjct: 225 GIKALASHGHTPGHTTYVVESQGQKLALLGD 255
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure
initiative, PSI, joint center for structural genomics;
HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1
d.157.1.3
Length = 410
Score = 38.2 bits (88), Expect = 0.005
Identities = 43/345 (12%), Positives = 102/345 (29%), Gaps = 39/345 (11%)
Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLH 92
++ID ++ I+ ++ + I + H DH G+L +
Sbjct: 62 ANVLIDGW------KGNYAKEFIDALSKIVDPKE-ITHIIVNHTEPDHSGSLPATLKTIG 114
Query: 93 VPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV-NHSIPETMAL 151
V I KR+ E + G++ ++G + V P+TM
Sbjct: 115 HDVE----IIASNFGKRLLEGFYGIKDVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVT 170
Query: 152 VIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMREGT----- 206
+ + + G + L + + + + + I+ ++ N + EG
Sbjct: 171 YLDGILFSCDVGGGYLLPEILDDSNESVVERYLPHVTKYIVTVIGHYKNYILEGAEKLSS 230
Query: 207 -----------CISEKGIKKNIYDIMKNAK-GCVLVTTFSSSVSRIRSIIDIAEQIGRKI 254
I +K ++ + + AK S + ++ ++ +
Sbjct: 231 LKIKALLPGHGLIWKKDPQRLLNHYVSVAKGDPKKGKVTVIYDSMYGFVENVMKKAIDSL 290
Query: 255 VLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSR 314
G + + I + + D ++ + L + +
Sbjct: 291 KEKGFTPVVYKFSDEERPAISEILKDIPDSEA--------LIFGVSTYEAEIHPLMRFTL 342
Query: 315 GEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAE 359
E+ + EK ++F A L E R+++
Sbjct: 343 LEIIDKANYEKPVLVFGVHG--WAPSAERTAGELLKETKFRILSF 385
>3kl7_A Putative metal-dependent hydrolase; structural genomics, joint
center for structural genomics, JCSG; 2.30A
{Parabacteroides distasonis atcc 8503}
Length = 235
Score = 37.8 bits (87), Expect = 0.007
Identities = 14/102 (13%), Positives = 25/102 (24%), Gaps = 1/102 (0%)
Query: 70 AIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKV 129
I ITH H DH + K + IS+ + V
Sbjct: 68 IILITHEHGDHLDPKAIQAVEKSDTEIIANENSQKKLGKGKVLKNGDTDTSISYMKIEAV 127
Query: 130 DVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDD 171
+ + H ++ + GD + +
Sbjct: 128 PAYNTTPGRDK-YHPRHRDNGYILTFDGLRVYIAGDTEDIPE 168
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II;
2.10A {Thermoanaerobacter tengcongensis MB4}
Length = 284
Score = 37.3 bits (85), Expect = 0.009
Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 21/156 (13%)
Query: 30 SSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGAL-HDLW 88
K I++D G S + + + + + + +TH H DH G L L
Sbjct: 40 KGNKEIVVDTGQS---------ENFIKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLE 90
Query: 89 SFLHVPVYASPFAIGLLEAKRVYERVSK-----------KIPCISFQAGDKVDVGAFSIE 137
V +Y + A R + + K + +++ G + I
Sbjct: 91 RNPEVKIYTHKEILNKKYAMRKGGQFEEIGFDLSFYEKYKNNFVLIDKDAEIEEGFYVIT 150
Query: 138 SVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAI 173
+ + + T G + +
Sbjct: 151 NTDITYDNEFTTKNFFVEKEGKRIPDKFLDEVFVVV 186
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES;
1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB:
1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A
1hlk_A*
Length = 232
Score = 36.0 bits (82), Expect = 0.022
Identities = 28/198 (14%), Positives = 56/198 (28%), Gaps = 29/198 (14%)
Query: 8 FLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKN 67
+ G G + N + + ++D ++ V+ V
Sbjct: 26 LAEIEGWGMVPSNGMIVINN----HQAALLDTPIN-DAQTEMLVNWV------TDSLHAK 74
Query: 68 LMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGD 127
+ H H D G L L V YA+ I L + K + +P F
Sbjct: 75 VTTFIPNHWHGDCIGGLGYLQR-KGVQSYANQMTIDLAKEKGLP------VPEHGFTDSL 127
Query: 128 KVDVGAFSIE--SVRVNHSIPETMALVIRSP---VGNIVHTGDWKLDDDAILGDVTD-KD 181
V + ++ + H+ + + G ++ + DVT
Sbjct: 128 TVSLDGMPLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQTTSIGNISDADVTAWPK 187
Query: 182 SLCAIGNEGILALMCDST 199
+L + + A +
Sbjct: 188 TL-----DKVKAKFPSAR 200
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface
entropy reduction, ISFI, beta- lactamase superfamily,
PSI-2; 2.75A {Thermotoga maritima}
Length = 267
Score = 36.0 bits (82), Expect = 0.025
Identities = 26/192 (13%), Positives = 56/192 (29%), Gaps = 23/192 (11%)
Query: 70 AIFITHAHEDHYGALHDL---WSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAG 126
+ I+H H DH G L L +L ++ E + +
Sbjct: 64 DVLISHGHYDHAGGLLYLSGKRVWLRKEALDQKYSGERYAGADWNEVLYYNTGKFVIERI 123
Query: 127 DKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAI 186
++ F + + + P G+ + + D D+ +L
Sbjct: 124 TEIGKNMFLLGPANLRGKV----------PTGDFFVERNGERRKD----LFEDEQTLVVR 169
Query: 187 GNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDI 246
EG++ + S + + + I ++ SS I I+
Sbjct: 170 TKEGLVVITGCSHRGIDNILLDIAETFNERIKMVVG------GFHLLKSSDDEIEKIVKA 223
Query: 247 AEQIGRKIVLLG 258
++G + V+
Sbjct: 224 FNELGVETVVPC 235
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative,
CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear
center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2
PDB: 2q42_A
Length = 254
Score = 35.6 bits (81), Expect = 0.032
Identities = 25/145 (17%), Positives = 42/145 (28%), Gaps = 27/145 (18%)
Query: 24 YGY--GSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHY 81
Y Y + ++D P I + + +NL I TH H DH
Sbjct: 13 YAYILHDEDTGTVGVVDPSE------------AEPIIDSLKRSGRNLTYILNTHHHYDHT 60
Query: 82 GALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRV 141
G +L V S ++ ++ + GDK + +
Sbjct: 61 GGNLELKDRYGAKVIGSA-----------MDKDRIPGIDMALKDGDKWMFAGHEVHVMDT 109
Query: 142 NHSIPETMALVIRSPVGNIVHTGDW 166
++L P + TGD
Sbjct: 110 PGHTKGHISLYF--PGSRAIFTGDT 132
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus
thermophilus HB8}
Length = 317
Score = 35.1 bits (79), Expect = 0.046
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 30 SSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWS 89
+ + ++D + + + + +++ I +TH H DHYG
Sbjct: 29 GAGEVALVDTALGTR----AARGALELHLAELGLCFQDVKTILLTHHHPDHYGLSGFFEG 84
Query: 90 FLHVPVYASP 99
Sbjct: 85 LGARVFLHEE 94
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural
genomics, PSI, protein structure initiative; 1.50A
{Bacillus anthracis str} SCOP: d.157.1.9
Length = 268
Score = 34.3 bits (77), Expect = 0.066
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 23/84 (27%)
Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLH 92
+++DCG + ++ A+ ++H H DH + L
Sbjct: 53 FRLLVDCGSGVLAQLQKYITP------------SDIDAVVLSHYHHDHVADIGVLQYARL 100
Query: 93 -----------VPVYASPFAIGLL 105
+P+Y F
Sbjct: 101 ITSATKGQLPELPIYGHTFDENGF 124
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A
{Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB:
2cfz_A* 2cg2_A 2cg3_A*
Length = 658
Score = 34.3 bits (78), Expect = 0.081
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 34 WIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALH 85
WI++D + P +LV ++ + + + +HAH DH+G +
Sbjct: 134 WIVVDTLTT-PATARAAYELVSRELG-----ERPIRTVIYSHAHADHFGGVR 179
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like
fold, MCSG, structural genomics, PSI-2; 1.80A {Vibrio
cholerae o1 biovar eltor str}
Length = 379
Score = 32.4 bits (73), Expect = 0.29
Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Query: 70 AIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKV 129
A+ +H H DH + + + V ++ + + GD +
Sbjct: 136 AVLASHDHADHIDVNVAAAVLQNCGEHVKFIGPQACVDLWLGWGVPQERCIV-AKVGDVL 194
Query: 130 DVGAFSIESVRVNHSIPETMA 150
++G I +
Sbjct: 195 EIGDVKIRVLDSFDRTALVTL 215
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A
{Escherichia coli} PDB: 2wym_A*
Length = 360
Score = 32.1 bits (72), Expect = 0.30
Identities = 18/100 (18%), Positives = 27/100 (27%), Gaps = 9/100 (9%)
Query: 70 AIFITHAHEDHYG--ALHDLWSFLHV--PVYASPFAIGLLEAKRVYERVSKKIPCISFQA 125
A+ TH H DH + P + L V + CI +
Sbjct: 112 AVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKE-----RCIVVKP 166
Query: 126 GDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGD 165
GD V V I ++ + G + D
Sbjct: 167 GDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMD 206
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding,
periplasm,; HET: SDF; 1.41A {Aeromonas hydrophila} PDB:
1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A*
3f9o_A
Length = 227
Score = 31.6 bits (71), Expect = 0.53
Identities = 18/144 (12%), Positives = 48/144 (33%), Gaps = 17/144 (11%)
Query: 31 SRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSF 90
++ ++ + D + + ++ RK ++ + T+ H D G W
Sbjct: 31 AKGVTVVGAT--WTPDTARELHKLIKRVS-----RKPVLEVINTNYHTDRAGGNAY-WKS 82
Query: 91 LHVPVYASPFAIGLL-----EAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSI 145
+ V ++ L+ E + + P + + V G F+++ +V
Sbjct: 83 IGAKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRAFY 142
Query: 146 PETM----ALVIRSPVGNIVHTGD 165
+ + P +++ G
Sbjct: 143 AGPAHTPDGIFVYFPDEQVLYGGC 166
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics,
seattle structural genomics center for infectious
disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar
abortus}
Length = 293
Score = 31.1 bits (69), Expect = 0.66
Identities = 22/158 (13%), Positives = 42/158 (26%), Gaps = 22/158 (13%)
Query: 21 MALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKER--KNLMAIFITHAHE 78
+ + Y + + ++ID G PD M + L A TH H
Sbjct: 66 LLVERYDAEGNNTVVVIDTG---------------PDFRMQMIDSGVHMLDAAVYTHPHA 110
Query: 79 DHYGALHDLWSFLH-----VPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGA 133
DH + DL +++ + VYA+ L Y +
Sbjct: 111 DHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFETPVGSSYPPILSMHDIAPE 170
Query: 134 FSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDD 171
+I + + ++ +
Sbjct: 171 TPFSIEGAGGAIRFEPFSQVHGDIESLGFRIGSVVYCT 208
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting
of N- and C-lobes, transferase; HET: PTR ABG; 1.80A
{Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A*
2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 1gjo_A 1oec_A* 3b2t_A*
3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3c4f_A*
Length = 334
Score = 30.9 bits (69), Expect = 0.86
Identities = 41/276 (14%), Positives = 82/276 (29%), Gaps = 57/276 (20%)
Query: 311 QLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGH 370
L G V +A + I + VA+ +K+ E+ + + + E + H
Sbjct: 42 PLGEGAFGQVVMA-EAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 100
Query: 371 PYPNDLKRMYQWIRPQVLV---AIHGEPLHLVAHKELALQEGIACVPPVRNGKMLRLFPD 427
+L P ++ A G + + E + V +M F D
Sbjct: 101 KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM--TFKD 158
Query: 428 PIEIIDEVVHGL-----------------FLKDGFLIGKFADLGIAKRRQLSF------- 463
+ ++ G+ L + K AD G+A+
Sbjct: 159 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 218
Query: 464 ----VGHLSVNVLLDNHYNIFGVP--------EIVDIGIPAYDGDGGKIHKLLLKTVITT 511
V ++ L D Y EI +G Y G
Sbjct: 219 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI--------------P 264
Query: 512 VVDLPQFRRKDLKLLR-ESISSALRSLLKKVWGKKP 546
V +L + ++ ++ + + ++ L +++ W P
Sbjct: 265 VEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVP 300
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting
of N- and C-lobes, transferase; 2.40A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1xr0_A
Length = 370
Score = 29.8 bits (66), Expect = 1.6
Identities = 44/275 (16%), Positives = 84/275 (30%), Gaps = 55/275 (20%)
Query: 311 QLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGH 370
L G V +A + I + VA+ +K+ E+ + + + E + H
Sbjct: 88 PLGEGCFGQVVMA-EAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 146
Query: 371 PYPNDLKRMYQWIRPQVLV---AIHGEPLHLVAHKELALQEGIACVPPVRNGKMLRLFPD 427
+L P ++ A G + + E + V +M F D
Sbjct: 147 KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM--TFKD 204
Query: 428 PIEIIDEVVHGL-----------------FLKDGFLIGKFADLGIAK--------RRQLS 462
+ ++ G+ L + K AD G+A+ ++ +
Sbjct: 205 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 264
Query: 463 FVG---HLSVNVLLDNHYNI------FGV--PEIVDIGIPAYDGDGGKIHKLLLKTVITT 511
++ L D Y FGV EI +G Y G + +L
Sbjct: 265 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI--PVEELFKLLKEGH 322
Query: 512 VVDLPQFRRKDLKLLRESISSALRSLLKKVWGKKP 546
+D P + ++ L +++ W P
Sbjct: 323 RMDKP-----------ANCTNELYMMMRDCWHAVP 346
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.50A
{Staphylococcus aureus subsp}
Length = 280
Score = 30.0 bits (66), Expect = 1.7
Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 8/71 (11%)
Query: 33 KWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERKNLMA--------IFITHAHEDHYGAL 84
++ID G+ K + D + + +TH H DH L
Sbjct: 58 YNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMTHMHFDHAAGL 117
Query: 85 HDLWSFLHVPV 95
D
Sbjct: 118 TDQAGHAIFEN 128
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
quorum quenching, alternative binding site, product
complex; HET: C6L GOL; 0.95A {Bacillus thuringiensis
serovarkurstaki} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A
2btn_A
Length = 254
Score = 28.8 bits (63), Expect = 3.5
Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 34/195 (17%)
Query: 1 MKNEELVFLPLG-------------GVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDD 47
M ++L F+P G G++ +N+ ++ Y + I++D G+ +
Sbjct: 5 MTVKKLYFIPAGRCMLDHSSVNSALTPGKL-LNLPVWCYLLETEEGPILVDTGMPESAVN 63
Query: 48 LPGV---DLVFPDITFIMKERKNLMA--------------IFITHAHEDHYGALHDLWSF 90
G+ V I M E ++ I +H H DH G +
Sbjct: 64 NEGLFNGTFVEGQILPKMTEEDRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNT 123
Query: 91 LHVPVYASPFAIGLLEAKRVYERVSKKIPCISFQAGDKVDVGAFSIESVRVNHSIPETMA 150
+ L + + GD V + HS
Sbjct: 124 PIIVQR--TEYEAALHREEYMKECILPHLNYKIIEGDYEVVPGVQLL-YTPGHSPGHQSL 180
Query: 151 LVIRSPVGNIVHTGD 165
+ G+++ T D
Sbjct: 181 FIETEQSGSVLLTID 195
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic
resistance, structure, hydrolase, metal binding protein;
1.90A {Pseudomonas aeruginosa}
Length = 246
Score = 28.8 bits (63), Expect = 3.6
Identities = 7/37 (18%), Positives = 10/37 (27%), Gaps = 1/37 (2%)
Query: 70 AIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLE 106
TH H D G + ++S L
Sbjct: 71 VAINTHFHLDGTGGNEIY-KKMGAETWSSDLTKQLRL 106
>3niv_A Glutathione S-transferase; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; 2.30A {Legionella pneumophila
subsp}
Length = 222
Score = 28.6 bits (63), Expect = 4.1
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 19 MNMALYGY-GSPSSRK--WIMIDCGVSF 43
M++ LY Y S + + + +++
Sbjct: 1 MSLILYDYFRSTACYRVRIALNLKKIAY 28
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary
protein KEFF; potassium channel regulation, domains,
antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli}
PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 28.3 bits (63), Expect = 4.1
Identities = 39/244 (15%), Positives = 68/244 (27%), Gaps = 36/244 (14%)
Query: 167 KLDDDAILGDVTDKDSLCAIGNEG----ILALMCDSTNAMREGTCISEKGIKKNI----- 217
K GD T D L + G I A+ TN + I
Sbjct: 45 KFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARD 104
Query: 218 ---YDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKI-VLLGSSLKRVVSVAIDVGI 273
Y ++ A G R + A + GR LG A
Sbjct: 105 VDHYIRLRQA-GVEKP---------ERETFEGALKTGRLALESLGLGPYEARERADV--- 151
Query: 274 IKKDQLFLSDESFGLYPREQLIVIATGSQGEPRSALAQLSRGEMRNVKLAEKD--TVIFS 331
++ + + +E + + + L+++ + ++ L ++
Sbjct: 152 FRRFNIQMVEEMAMVENDTKARAAVY---KRTSAMLSEIITEDREHLSLIQRHGWQGTEE 208
Query: 332 SRAIPGNEVAIGHIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDL---KRMYQWIRPQVL 388
+ GN K G+ + + HPYP+ KRM + R
Sbjct: 209 GKHT-GNMADEPETKPSSTSGGLVPRGSSGMILI-IYAHPYPHHSHANKRMLEQARTLEG 266
Query: 389 VAIH 392
V I
Sbjct: 267 VEIR 270
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase; HET: MES; 2.10A
{Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*
Length = 320
Score = 28.2 bits (61), Expect = 4.5
Identities = 15/65 (23%), Positives = 17/65 (26%), Gaps = 19/65 (29%)
Query: 32 RKWIMIDCGVSFPKDDLPGVDLVFPDITFIMKERK----NLMAIFITHAHEDHYGALHDL 87
R + DCG M + IFITH H DH L L
Sbjct: 31 RSVWLFDCG---------------EATQHQMLHTTIKPRKIEKIFITHMHGDHVYGLPGL 75
Query: 88 WSFLH 92
Sbjct: 76 LGSRS 80
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia,
isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A*
1i3n_A*
Length = 348
Score = 27.7 bits (60), Expect = 6.1
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 3/99 (3%)
Query: 342 IG-HIKNRLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVA 400
IG H L+E G + D G P L+R+ + V + L A
Sbjct: 14 IGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF-EEMDILDQGA 72
Query: 401 HKELALQEGIACVPPVRNGKMLRL-FPDPIEIIDEVVHG 438
+ L + V K + P++ + G
Sbjct: 73 LQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTG 111
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP:
d.64.1.1
Length = 126
Score = 27.6 bits (61), Expect = 6.9
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Query: 176 DVTDKDSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSS 235
D + D L G E + + N + T + + ++K K F+
Sbjct: 28 DASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFK-----KKFAC 82
Query: 236 SVSRIRSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQL 279
+ + +I+ E G I L G K + +++G+ K DQL
Sbjct: 83 NGT----VIEHPEY-GEVIQLQGDQRKNICQFLVEIGLAKDDQL 121
>1kez_A Erythronolide synthase; polyketide synthase, modular polyketide
synthase, thioesterase, 6-DEB, TE, DEBS, alpha,
beta-hydrolase; 2.80A {Saccharopolyspora erythraea}
SCOP: c.69.1.22 PDB: 1mo2_A
Length = 300
Score = 27.7 bits (61), Expect = 7.8
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 348 RLVEQGVRVIAEDAECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAH 401
+ V A P + G P P+ + + V+ +P + H
Sbjct: 90 GALRGIAPVRAVPQ--PGYEEGEPLPSSMAAVAAVQADAVIRTQGDKPFVVAGH 141
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.141 0.415
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,976,724
Number of extensions: 246510
Number of successful extensions: 787
Number of sequences better than 10.0: 1
Number of HSP's gapped: 737
Number of HSP's successfully gapped: 67
Length of query: 559
Length of database: 5,693,230
Length adjustment: 97
Effective length of query: 462
Effective length of database: 3,341,562
Effective search space: 1543801644
Effective search space used: 1543801644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.1 bits)