BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] (559 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] Length = 559 Score = 1137 bits (2940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 559/559 (100%), Positives = 559/559 (100%) Query: 1 MKNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITF 60 MKNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITF Sbjct: 1 MKNEELVFLPLGGVGEIGMNMALYGYGSPSSRKWIMIDCGVSFPKDDLPGVDLVFPDITF 60 Query: 61 IMKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPC 120 IMKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPC Sbjct: 61 IMKERKNLMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPC 120 Query: 121 ISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDK 180 ISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDK Sbjct: 121 ISFQAGDKVDVGAFSIESVRVNHSIPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDK 180 Query: 181 DSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRI 240 DSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRI Sbjct: 181 DSLCAIGNEGILALMCDSTNAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRI 240 Query: 241 RSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIATG 300 RSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIATG Sbjct: 241 RSIIDIAEQIGRKIVLLGSSLKRVVSVAIDVGIIKKDQLFLSDESFGLYPREQLIVIATG 300 Query: 301 SQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAED 360 SQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAED Sbjct: 301 SQGEPRSALAQLSRGEMRNVKLAEKDTVIFSSRAIPGNEVAIGHIKNRLVEQGVRVIAED 360 Query: 361 AECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIACVPPVRNGK 420 AECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIACVPPVRNGK Sbjct: 361 AECPVHVSGHPYPNDLKRMYQWIRPQVLVAIHGEPLHLVAHKELALQEGIACVPPVRNGK 420 Query: 421 MLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLLDNHYNIF 480 MLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLLDNHYNIF Sbjct: 421 MLRLFPDPIEIIDEVVHGLFLKDGFLIGKFADLGIAKRRQLSFVGHLSVNVLLDNHYNIF 480 Query: 481 GVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISSALRSLLKK 540 GVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISSALRSLLKK Sbjct: 481 GVPEIVDIGIPAYDGDGGKIHKLLLKTVITTVVDLPQFRRKDLKLLRESISSALRSLLKK 540 Query: 541 VWGKKPLVTVFINKISRQR 559 VWGKKPLVTVFINKISRQR Sbjct: 541 VWGKKPLVTVFINKISRQR 559 >gi|254780624|ref|YP_003065037.1| ubiquinone/menaquinone biosynthesis methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 265 Score = 30.8 bits (68), Expect = 0.061, Method: Compositional matrix adjust. Identities = 14/56 (25%), Positives = 29/56 (51%) Query: 39 CGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVP 94 C ++F ++P + LV +I I+K L+ + + + ++D+WSF +P Sbjct: 144 CTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIP 199 >gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62] Length = 673 Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 5/88 (5%) Query: 345 IKNRLVEQGVRVIAEDAEC---PVHVSGHPYPNDLKRMYQWIRPQV-LVAIHG-EPLHLV 399 R + GVR A A +H PY + RP + L ++ G +H++ Sbjct: 410 FSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVL 469 Query: 400 AHKELALQEGIACVPPVRNGKMLRLFPD 427 H + L E PV + LR PD Sbjct: 470 THDSIGLGEDGPTHQPVEHLAALRAIPD 497 >gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 798 Score = 25.8 bits (55), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 145 IPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMRE 204 I +T+A + RS +HT + DDD++L ++ G E + + S R Sbjct: 444 IKKTIASMNRS-----IHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARA 498 Query: 205 G 205 G Sbjct: 499 G 499 >gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 805 Score = 25.8 bits (55), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 8/92 (8%) Query: 200 NAMREGTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQIGRKIVLLGS 259 N +REG I E G+ I+ K L S S I++I A + K++L Sbjct: 640 NLLREGLDIPECGL----VAILDADKEGFL----RSKTSLIQTIGRAARNVNSKVILYAD 691 Query: 260 SLKRVVSVAIDVGIIKKDQLFLSDESFGLYPR 291 ++ + + +AID ++++ ++ + P+ Sbjct: 692 TITKSIQLAIDETTRRREKQLEHNKKHNINPQ 723 >gi|254780583|ref|YP_003064996.1| glyoxalase II [Candidatus Liberibacter asiaticus str. psy62] Length = 256 Score = 25.4 bits (54), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 15/72 (20%) Query: 68 LMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCIS--FQA 125 L IF TH H DH A +L F + ++ G LE S KIP I Sbjct: 49 LTHIFNTHHHIDHTRANLNLKKFFNCTIF------GPLEE-------SSKIPGIDHGLSD 95 Query: 126 GDKVDVGAFSIE 137 GD D G+ I+ Sbjct: 96 GDTFDFGSHPIK 107 >gi|254781178|ref|YP_003065591.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 304 Score = 25.4 bits (54), Expect = 2.6, Method: Compositional matrix adjust. Identities = 9/34 (26%), Positives = 21/34 (61%) Query: 398 LVAHKELALQEGIACVPPVRNGKMLRLFPDPIEI 431 L+ + +Q+ + +P + + ++ RL+PD +EI Sbjct: 118 LIFFDAIKIQKQLLALPWIAHAEIRRLYPDTMEI 151 >gi|254780768|ref|YP_003065181.1| hypothetical protein CLIBASIA_03295 [Candidatus Liberibacter asiaticus str. psy62] Length = 281 Score = 25.0 bits (53), Expect = 3.6, Method: Compositional matrix adjust. Identities = 11/34 (32%), Positives = 20/34 (58%) Query: 205 GTCISEKGIKKNIYDIMKNAKGCVLVTTFSSSVS 238 GTC+ + +K++I MK+A+ + S+VS Sbjct: 142 GTCVPNRDVKRDILAAMKSAEALSELDVGQSAVS 175 >gi|254781137|ref|YP_003065550.1| hypothetical protein CLIBASIA_05195 [Candidatus Liberibacter asiaticus str. psy62] Length = 195 Score = 24.6 bits (52), Expect = 4.4, Method: Compositional matrix adjust. Identities = 12/27 (44%), Positives = 18/27 (66%) Query: 250 IGRKIVLLGSSLKRVVSVAIDVGIIKK 276 +G +V+L SL R V A+D GI+K+ Sbjct: 75 LGGAMVMLDLSLARPVINAVDWGIVKR 101 >gi|254780644|ref|YP_003065057.1| hypothetical protein CLIBASIA_02655 [Candidatus Liberibacter asiaticus str. psy62] Length = 289 Score = 24.3 bits (51), Expect = 5.1, Method: Compositional matrix adjust. Identities = 10/33 (30%), Positives = 19/33 (57%) Query: 217 IYDIMKNAKGCVLVTTFSSSVSRIRSIIDIAEQ 249 +YDI+KN +L+T + S+ +R + E+ Sbjct: 146 LYDIVKNRNDIMLLTKYGESLQILRRLTQETEK 178 >gi|254780758|ref|YP_003065171.1| hypothetical protein CLIBASIA_03225 [Candidatus Liberibacter asiaticus str. psy62] Length = 216 Score = 23.9 bits (50), Expect = 7.7, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%) Query: 38 DCGVSFPKDDL------PGVDL-VFPDITFIMKERKNLMAIFITHAHEDHYGA 83 +C F ++ L PG DL + D+ I ++ I+ITH H DH G Sbjct: 17 NCTFLFDEESLEAVVVDPGGDLDIIKDV--IQSRNFHVKQIWITHGHVDHVGG 67 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.141 0.415 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 367,372 Number of Sequences: 1233 Number of extensions: 15990 Number of successful extensions: 50 Number of sequences better than 100.0: 13 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 15 length of query: 559 length of database: 328,796 effective HSP length: 79 effective length of query: 480 effective length of database: 231,389 effective search space: 111066720 effective search space used: 111066720 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 41 (20.4 bits)