HHsearch alignment for GI: 254780870 and conserved domain: COG0441
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=592.07 Aligned_cols=403 Identities=22% Similarity=0.369 Sum_probs=362.4
Q ss_pred HHHHHHHC-CCCCCCCCCHHHHHHHCCCE-ECCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHC
Q ss_conf 78887310-71114125612213530320-00388111043169999999999999998669889735751246898771
Q gi|254780870|r 6 YFLPILQE-NPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83 (449)
Q Consensus 6 ~~~~~l~~-~~~d~~~~~~~ll~~~g~i~-~~~~G~~~~lP~G~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~S 83 (449)
T Consensus 179 ~~l~~~eea~krdHrklg~el~LF~--~~~~~~~G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~S 256 (589)
T COG0441 179 AYLKRLEEAKKRDHRKLGKELDLFS--FSPEEGPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELS 256 (589)
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCEE--ECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCHHC
T ss_conf 9976666502786476877621434--14445885069878846699999999998987558527128736300001011
Q ss_pred CCCHHHHHHHCCHHHCCCCCCEECCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCCC-CCCCCEEEEEEECCE
Q ss_conf 9731122221040213786200034555431011000013420134026414653345667675-434531668740422
Q gi|254780870|r 84 GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYS 162 (449)
Q Consensus 84 Gh~d~~~~em~~~~d~~~~~~~LrP~~~e~~~~i~~~~~~SYr~LPlr~y~ig~~fR~E~rp~~-GL~R~ReF~q~D~~~ 162 (449)
T Consensus 257 GH~~~y~e~mf~~~-~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdD~Hi 335 (589)
T COG0441 257 GHWDNYKEDMFLTE-SDDREYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHI 335 (589)
T ss_pred CCHHHCCCCCEEEC-CCCHHHEEEECCCHHHHHHHHCCCCCEECCCHHHHHCCEEECCCCCCHHHCCCCCCCEEECCCCE
T ss_conf 20455136606621-37723306410787689998537861100440433144221156764222240011322456201
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHCCHHHH
Q ss_conf 11886887999999999874111100620122331100101311334345468677014310100347764111220121
Q gi|254780870|r 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242 (449)
Q Consensus 163 F~~~~e~~~~e~~~~~~~~~~i~~~lgl~~~~v~~~~~~ig~~~s~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 242 (449)
T Consensus 336 f-c~~dQi~~E~~~~~~~i~~v~~~fg~~~y~~~ls~r~------------------k~ig~d~~W~~a~~~l~~al~~~ 396 (589)
T COG0441 336 F-CTPDQIKDEFKGILELILEVYKDFGFTDYEVKLSTRP------------------KFIGSDEMWDKAEAALREALKEI 396 (589)
T ss_pred E-CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC------------------CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 4-0467889999999999999998469753799996477------------------64687355677889999888760
Q ss_pred HCCCCCCCCCCCCCCCCHHHCHHHHHCCCCCCCEEEEEEEECCCEEECCCCCCCCCEEEEECCCCCC-CCCCCCCCCCCC
Q ss_conf 0011220001363212011000233035876552432111158144223112230115896477772-323366634474
Q gi|254780870|r 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQMGSYGIGA 321 (449)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~d~~~~~~~d~l~~~~~~~~~~ie~~~~f~lG~~ys~~~~~~~~~~~g~~-~~~~~g~~giG~ 321 (449)
T Consensus 397 ~~~~~~~~G~gaFyGPKid~---~v~Dalgr~~q~~TIQlD----f~lpeRF----~l~Yv~~d~~~~~PvmiHrai~GS 465 (589)
T COG0441 397 GVEYVEEPGEGAFYGPKIDF---QVKDALGREWQLGTIQLD----FNLPERF----DLEYVDEDGEKKRPVIIHRAILGS 465 (589)
T ss_pred CCEEEECCCCEEEECCCCCE---EEEECCCCCEECCEEEEE----CCCHHHC----EEEEECCCCCCCCCEEEEECCCHH
T ss_conf 86036468735797766424---887356861005617870----3772421----479985778753878999246414
Q ss_pred CCCHHHHHHCCCCCCCCCCCHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 30023322102321111136332032110242178879999999999999998698799975897970867878748998
Q gi|254780870|r 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401 (449)
Q Consensus 322 ~R~~~alle~~~d~~g~~wP~~iaP~~v~Iipi~~~~~~~~~~A~~i~~~Lr~~Gi~v~~D~r~~~iGkK~~~Ad~~gip 401 (449)
T Consensus 466 iERfi~iLiE~~~G~---~P~WLaPvQv~VipV~~~---~~~ya~~v~~~L~~~giRvdvD~~~e~l~kKIR~a~~~kip 539 (589)
T COG0441 466 IERFIGILLEHYAGA---LPTWLAPVQVRVIPVADE---HLDYAKEVAEKLRKAGIRVDIDDRNEKLGKKIREAGTQKIP 539 (589)
T ss_pred HHHHHHHHHHHCCCC---CCCCCCCCEEEEEEECHH---HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 899999999864698---876578517999993737---77899999999997297024125666068999987762878
Q ss_pred EEEEECCCHHHCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHCCC
Q ss_conf 8999862402357189999899978786199999999999872688
Q gi|254780870|r 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447 (449)
Q Consensus 402 ~~iiiG~~el~~~~Vtir~r~tg~q~~v~l~eli~~i~~~l~~~~~ 447 (449)
T Consensus 540 yiiVvG~kE~e~~~v~vR~r~~~~~~~~~l~e~i~~ik~e~~~~~~ 585 (589)
T COG0441 540 YVIVVGDKEVETGTVVVRRRGGKQQKSMTLEELVEELKKEIEGRPN 585 (589)
T ss_pred EEEEECHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 7999731432038717997267755634699999999987644557