HHsearch alignment for GI: 254780870 and conserved domain: COG0442
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=669.24 Aligned_cols=438 Identities=45% Similarity=0.756 Sum_probs=383.5
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCCEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Q ss_conf 96306788873107111412561221353032000388111043169999999999999998669889735751246898
Q gi|254780870|r 1 MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80 (449)
Q Consensus 1 m~~s~~~~~~l~~~~~d~~~~~~~ll~~~g~i~~~~~G~~~~lP~G~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~ 80 (449)
T Consensus 1 m~~s~~~~~t~~~~p~da~~~sh~ll~rAg~i~~~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLw 80 (500)
T COG0442 1 MRMSKLFLPTLKEKPADASEWSHQLLLRAGMIRKPVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELW 80 (500)
T ss_pred CCCCCCCCHHCCCCCCHHHHHHHHHHHHCCCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECHHCCHHHHH
T ss_conf 97433331102488202379999999866860202571699776589999999999999998608508831105878999
Q ss_pred HHCCCCHHHHHHHCCHHHCCCCCCEECCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 77197311222210402137862000345554310110000134201340264146533456676754345316687404
Q gi|254780870|r 81 VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160 (449)
Q Consensus 81 ~~SGh~d~~~~em~~~~d~~~~~~~LrP~~~e~~~~i~~~~~~SYr~LPlr~y~ig~~fR~E~rp~~GL~R~ReF~q~D~ 160 (449)
T Consensus 81 kEs~r~~~f~~El~~v~drg~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkda 160 (500)
T COG0442 81 KESGRWEGFGPELFRVKDRGDRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDA 160 (500)
T ss_pred HHHCHHHCCCHHHEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCHHEEEECCC
T ss_conf 87485630364448997169963435788689999999998655651881210134588433468877300020330111
Q ss_pred CEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHCCCCHHHHHHHHC-CCCCCEEEECCCCCCCCCCHH-HCC
Q ss_conf 221188688799999999987411110062012233110010131133434546-867701431010034776411-122
Q gi|254780870|r 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA-DTGETQVFCSKDFMDFPIPSE-NTD 238 (449)
Q Consensus 161 ~~F~~~~e~~~~e~~~~~~~~~~i~~~lgl~~~~v~~~~~~ig~~~s~e~~~~~-~~~e~~~~~~~~~~~~~~~~~-~~~ 238 (449)
T Consensus 161 ySfh~~~e~a~~~y~~~~~~Y~~if~~i~l~~~~~~ad~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~~~~~ 240 (500)
T COG0442 161 YSFHADEEDAEETYEKMLDAYSRIFLRLPLIFGPVPADEGFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIK 240 (500)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEEEECCHHHHHHHHCCCCC
T ss_conf 21028989999999999999999998589538862566778887653699998568985479980626666877446777
Q ss_pred HHHHH------------CC-----------CCCCCCCCCC--------------CC-C---------CHHHC-------H
Q ss_conf 01210------------01-----------1220001363--------------21-2---------01100-------0
Q gi|254780870|r 239 FDDII------------SL-----------NSIVEQWTAP--------------YA-A---------TSDVH-------N 264 (449)
Q Consensus 239 ~~~~~------------~~-----------~~~~~~~~~~--------------~~-~---------~~d~~-------~ 264 (449)
T Consensus 241 ~~~~~~~~~~~v~t~s~~~s~r~~~~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~ 320 (500)
T COG0442 241 FEDEEEGELEYVHTTSYGISTRIIGAAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGI 320 (500)
T ss_pred CCCCCCCCCEEECCCCEEEEEEEEEEEEEEECCCCCCCCCCHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCE
T ss_conf 55666554147514626887400158999714887764875004534899751336741013343045444566543025
Q ss_pred HHHHC-CCCCC--C-EEEEEEEECCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCC
Q ss_conf 23303-58765--5-24321111581442231122301158964777723233666344743002332210232111113
Q gi|254780870|r 265 EKLFD-SLPEN--K-RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340 (449)
Q Consensus 265 ~~~~d-~l~~~--~-~~~~~~ie~~~~f~lG~~ys~~~~~~~~~~~g~~~~~~~g~~giG~~R~~~alle~~~d~~g~~w 340 (449)
T Consensus 321 ~~~~D~~~~~~~G~kl~~~e~ieVghif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ieq~~d~~gi~w 400 (500)
T COG0442 321 RVEGDDRSPDGPGFKLNIWEGIEVGHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRLVAALLEQIHDENGIIW 400 (500)
T ss_pred EEECCCCCCCCCCCEEEEEECCCCCEEEEECCHHHHHCEEEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 88424568999972110210244577999874125418049992488714417870000034599999997362226716
Q ss_pred CHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHCCEEEEE
Q ss_conf 633203211024217887999999999999999869-8799975897970867878748998899986240235718999
Q gi|254780870|r 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419 (449)
Q Consensus 341 P~~iaP~~v~Iipi~~~~~~~~~~A~~i~~~Lr~~G-i~v~~D~r~~~iGkK~~~Ad~~gip~~iiiG~~el~~~~Vtir 419 (449)
T Consensus 401 ~~a~apf~~~iv~~n~~~~~~~~~~~~~~~~l~~~G~~e~~~ddr~er~g~k~~~a~liGiP~~~~~g~~-~~~g~~e~k 479 (500)
T COG0442 401 PKAIAPFDVHIVPVNTKDFKQAEAAEKLYVELPWCGTVEVLLDDRDERPGVKFADADLIGIPLRIVVGKR-LAEGEVEVK 479 (500)
T ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEECCCCEEEECCC-CCCCCEEEE
T ss_conf 0014750007997486359999875658998775786214454220146750148747104403310334-468823688
Q ss_pred ECCCCCEEEEEHHHHHHHHH
Q ss_conf 98999787861999999999
Q gi|254780870|r 420 HRLTGIREDMSLEEVINYAS 439 (449)
Q Consensus 420 ~r~tg~q~~v~l~eli~~i~ 439 (449)
T Consensus 480 ~r~~ge~~~~~~~~l~~~~~ 499 (500)
T COG0442 480 CRKCGEKEAVTIEALFARLY 499 (500)
T ss_pred ECCCCCHHHCCHHHHHHHHH
T ss_conf 64778610154998888860