HHsearch alignment for GI: 254780870 and conserved domain: COG1190
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=98.58 E-value=9.2e-08 Score=68.48 Aligned_cols=114 Identities=19% Similarity=0.291 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHHHHHHCCHHHCCCCCCEECCCCCCCCCCCHHHCCCCC
Q ss_conf 69999999999999998669889735751246898771973112222104021378620003455543101100001342
Q gi|254780870|r 46 GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125 (449)
Q Consensus 46 G~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~SGh~d~~~~em~~~~d~~~~~~~LrP~~~e~~~~i~~~~~~SY 125 (449)
T Consensus 179 ~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~----GG---A~ArPF~ThhNald~dlyLRIApE----LyLKRliVG- 246 (502)
T COG1190 179 TFIKRSKIIRAIREFLDDRGFLEVETPMLQPIP----GG---AAARPFITHHNALDMDLYLRIAPE----LYLKRLIVG- 246 (502)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC----CC---CCCCCCEEEECCCCCCEEEEECCH----HHHHHHHHC-
T ss_conf 999999999999999987797584160003557----87---322650122023677568762418----999988753-
Q ss_pred CCCCE-EEEECCCCCCCC-CCCCCCCCCCEEEEEEECCEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 01340-264146533456-6767543453166874042211886887999999999874111
Q gi|254780870|r 126 RNLPF-TFYQIQLKFRDE-LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185 (449)
Q Consensus 126 r~LPl-r~y~ig~~fR~E-~rp~~GL~R~ReF~q~D~~~F~~~~e~~~~e~~~~~~~~~~i~ 185 (449)
T Consensus 247 ---G~erVfEIgr~FRNEGid~tHN----PEFTmlE~Y~-------AYaDy~D~m~ltE~Li 294 (502)
T COG1190 247 ---GFERVFEIGRNFRNEGIDTTHN----PEFTMLEFYQ-------AYADYEDLMDLTEELI 294 (502)
T ss_pred ---CCHHHEEECCCCCCCCCCCCCC----CCHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_conf ---7214223055200378766648----4235689999-------9857999999999999