HHsearch alignment for GI: 254780870 and conserved domain: PRK00488
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated.
Probab=96.35 E-value=0.035 Score=33.19 Aligned_cols=104 Identities=10% Similarity=0.109 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHH--H----HCCCCHHHHHHHCCHHHCCCCCCEECCCCCCCCCCCHH
Q ss_conf 69999999999999998669889735751246898--7----71973112222104021378620003455543101100
Q gi|254780870|r 46 GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW--V----ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119 (449)
Q Consensus 46 G~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~--~----~SGh~d~~~~em~~~~d~~~~~~~LrP~~~e~~~~i~~ 119 (449)
T Consensus 105 ~~HPit~~~~ei~~iF~~~Gf~v~~GpeiE~~-~~NFdaLn~P~~HPAR~~~DTFy~~----~~~lLRTHTS~~qir~m~ 179 (338)
T PRK00488 105 GLHPLTRTIERIEDIFVGLGFEVAEGPEIEDD-YYNFEALNIPKDHPARDMQDTFYID----DRLLLRTHTSPVQIRTME 179 (338)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEECCCCEEEH-HHHHHHHCCCCCCCCCCCCCEEEEC----CCCEECCCCCHHHHHHHH
T ss_conf 64769999999999999869769618831004-5468875699788543646628976----871343568788899997
Q ss_pred HCCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCEEEEEEECCEE
Q ss_conf 001342013402641465334566-76754345316687404221
Q gi|254780870|r 120 SHIKSYRNLPFTFYQIQLKFRDEL-RPRFGVMRSREFLMKDAYSF 163 (449)
Q Consensus 120 ~~~~SYr~LPlr~y~ig~~fR~E~-rp~~GL~R~ReF~q~D~~~F 163 (449)
T Consensus 180 ----~-~~pp~~~i~~GrvyR~d~~DatH----~~~FhQ~Egl~v 215 (338)
T PRK00488 180 ----K-QKPPIRIIAPGRVYRNDSDDATH----SPMFHQVEGLVV 215 (338)
T ss_pred ----H-CCCCEEEEECCCCCCCCCCCCCC----CEEEEEEEEEEE
T ss_conf ----2-69986999526631589998753----504664005897