HHsearch alignment for GI: 254780870 and conserved domain: PRK05431

>PRK05431 seryl-tRNA synthetase; Provisional.
Probab=99.93  E-value=6.1e-26  Score=183.42  Aligned_cols=270  Identities=19%  Similarity=0.311  Sum_probs=203.7

Q ss_pred             CCCCCCCCCHHHHHHH--CCCEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHHHH
Q ss_conf             7111412561221353--03200038811104316999999999999999866988973575124689877197311222
Q gi|254780870|r   14 NPRDAEIASHKLMLRT--GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK   91 (449)
Q Consensus        14 ~~~d~~~~~~~ll~~~--g~i~~~~~G~~~~lP~G~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~SGh~d~~~~   91 (449)
T Consensus       135 ~~k~H~elge~l~liDfe~aaKiSGsRF~~Lkg~~A~LerALi~f~ld~~~~~Gy~~v~~P~lv~~~~~~gtGqlPkfe~  214 (422)
T PRK05431        135 EPKDHWELGEKLGILDFERAAKVSGSRFYVLKGDGARLERALIQFMLDLHTEEGYTEVIPPYLVNEESMYGTGQLPKFEE  214 (422)
T ss_pred             CCCCHHHHHHHCCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCCCHH
T ss_conf             88778899876476104667755078704600489999999999999999987997996737636788744537974487


Q ss_pred             HHCCHHHCCCCCCEECCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCC--CCC--CCCCCCEEEEEEECCEECCCH
Q ss_conf             2104021378620003455543101100001342013402641465334566--767--543453166874042211886
Q gi|254780870|r   92 EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--RPR--FGVMRSREFLMKDAYSFDLTP  167 (449)
Q Consensus        92 em~~~~d~~~~~~~LrP~~~e~~~~i~~~~~~SYr~LPlr~y~ig~~fR~E~--rp~--~GL~R~ReF~q~D~~~F~~~~  167 (449)
T Consensus       215 ~~Y~i~---~~dl~Li~TAEvpL~~~~~~eil~~~~LPik~~~~S~CFR~EAGs~GkdtrGl~RvHQF~KVE~f~~-~~p  290 (422)
T PRK05431        215 DLFKIE---DDDLYLIPTAEVPLTNLHRDEILDEEELPIKYTAYSPCFRSEAGSAGRDTRGLIRQHQFDKVELVKF-TKP  290 (422)
T ss_pred             HHHHHC---CCCEEEECCCCCCHHHHHHCCCCCHHHCCHHHEEECCHHHHCCCCCCCCCCCCEEEEEECEEEEEEE-CCH
T ss_conf             754105---8871760565321233440113365439844527883653031336755676124430000343353-586


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHCCHHHHHCCCC
Q ss_conf             88799999999987411110062012233110010131133434546867701431010034776411122012100112
Q gi|254780870|r  168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS  247 (449)
Q Consensus       168 e~~~~e~~~~~~~~~~i~~~lgl~~~~v~~~~~~ig~~~s~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (449)
T Consensus       291 e~S~~~~e~~~~~~e~i~~~L~lpyrvv~~~sgdlg~~a~~~yDi---------------------------------E~  337 (422)
T PRK05431        291 EDSYAELEELTGNAEEILQKLELPYRVVLLCTGDMGFSAAKTYDL---------------------------------EV  337 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHEEE---------------------------------EE
T ss_conf             779999999999999999875985023567876557665654545---------------------------------78


Q ss_pred             CCCCCCCCCCCCHHHCHHHHHCCCCCCCEEEEEEEECCCEEECCCCC-CCCCEEEEECCCCCCCCCCC-CCCCCCCCCCH
Q ss_conf             20001363212011000233035876552432111158144223112-23011589647777232336-66344743002
Q gi|254780870|r  248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-SLPMSATFKGADGKDHYVQM-GSYGIGAMRVV  325 (449)
Q Consensus       248 ~~~~~~~~~~~~~d~~~~~~~d~l~~~~~~~~~~ie~~~~f~lG~~y-s~~~~~~~~~~~g~~~~~~~-g~~giG~~R~~  325 (449)
T Consensus       338 W~P~~~~-y~-------------------------EvsS~Snc-~d~QsrRl~iry~~~~~~~~~~htlNgt~~A~~R~l  390 (422)
T PRK05431        338 WLPGQNT-YR-------------------------EISSCSNC-TDFQARRANIRYRDEDGKPELVHTLNGSGLAVGRTL  390 (422)
T ss_pred             EECCCCC-EE-------------------------EEEEECCC-CHHHHHHCCCEEECCCCCEEEEEECCCCHHHHHHHH
T ss_conf             7156685-45-------------------------24000150-148875302655179998664043115121887899


Q ss_pred             HHHHHCCCCCCC-CCCCHHHCCC
Q ss_conf             332210232111-1136332032
Q gi|254780870|r  326 AAVIESSHDGKG-IIWPDSVAPF  347 (449)
Q Consensus       326 ~alle~~~d~~g-~~wP~~iaP~  347 (449)
T Consensus       391 ~ailEn~q~~dg~i~iP~~L~~y  413 (422)
T PRK05431        391 VAILENYQQADGSVTIPEVLRPY  413 (422)
T ss_pred             HHHHHHCCCCCCCEECCHHHHHH
T ss_conf             99988464899888478131201