HHsearch alignment for GI: 254780870 and conserved domain: PRK05431
>PRK05431 seryl-tRNA synthetase; Provisional.
Probab=99.93 E-value=6.1e-26 Score=183.42 Aligned_cols=270 Identities=19% Similarity=0.311 Sum_probs=203.7
Q ss_pred CCCCCCCCCHHHHHHH--CCCEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHHHH
Q ss_conf 7111412561221353--03200038811104316999999999999999866988973575124689877197311222
Q gi|254780870|r 14 NPRDAEIASHKLMLRT--GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91 (449)
Q Consensus 14 ~~~d~~~~~~~ll~~~--g~i~~~~~G~~~~lP~G~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~SGh~d~~~~ 91 (449)
T Consensus 135 ~~k~H~elge~l~liDfe~aaKiSGsRF~~Lkg~~A~LerALi~f~ld~~~~~Gy~~v~~P~lv~~~~~~gtGqlPkfe~ 214 (422)
T PRK05431 135 EPKDHWELGEKLGILDFERAAKVSGSRFYVLKGDGARLERALIQFMLDLHTEEGYTEVIPPYLVNEESMYGTGQLPKFEE 214 (422)
T ss_pred CCCCHHHHHHHCCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCCCHH
T ss_conf 88778899876476104667755078704600489999999999999999987997996737636788744537974487
Q ss_pred HHCCHHHCCCCCCEECCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCC--CCC--CCCCCCEEEEEEECCEECCCH
Q ss_conf 2104021378620003455543101100001342013402641465334566--767--543453166874042211886
Q gi|254780870|r 92 EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--RPR--FGVMRSREFLMKDAYSFDLTP 167 (449)
Q Consensus 92 em~~~~d~~~~~~~LrP~~~e~~~~i~~~~~~SYr~LPlr~y~ig~~fR~E~--rp~--~GL~R~ReF~q~D~~~F~~~~ 167 (449)
T Consensus 215 ~~Y~i~---~~dl~Li~TAEvpL~~~~~~eil~~~~LPik~~~~S~CFR~EAGs~GkdtrGl~RvHQF~KVE~f~~-~~p 290 (422)
T PRK05431 215 DLFKIE---DDDLYLIPTAEVPLTNLHRDEILDEEELPIKYTAYSPCFRSEAGSAGRDTRGLIRQHQFDKVELVKF-TKP 290 (422)
T ss_pred HHHHHC---CCCEEEECCCCCCHHHHHHCCCCCHHHCCHHHEEECCHHHHCCCCCCCCCCCCEEEEEECEEEEEEE-CCH
T ss_conf 754105---8871760565321233440113365439844527883653031336755676124430000343353-586
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHCCHHHHHCCCC
Q ss_conf 88799999999987411110062012233110010131133434546867701431010034776411122012100112
Q gi|254780870|r 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247 (449)
Q Consensus 168 e~~~~e~~~~~~~~~~i~~~lgl~~~~v~~~~~~ig~~~s~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (449)
T Consensus 291 e~S~~~~e~~~~~~e~i~~~L~lpyrvv~~~sgdlg~~a~~~yDi---------------------------------E~ 337 (422)
T PRK05431 291 EDSYAELEELTGNAEEILQKLELPYRVVLLCTGDMGFSAAKTYDL---------------------------------EV 337 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHEEE---------------------------------EE
T ss_conf 779999999999999999875985023567876557665654545---------------------------------78
Q ss_pred CCCCCCCCCCCCHHHCHHHHHCCCCCCCEEEEEEEECCCEEECCCCC-CCCCEEEEECCCCCCCCCCC-CCCCCCCCCCH
Q ss_conf 20001363212011000233035876552432111158144223112-23011589647777232336-66344743002
Q gi|254780870|r 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-SLPMSATFKGADGKDHYVQM-GSYGIGAMRVV 325 (449)
Q Consensus 248 ~~~~~~~~~~~~~d~~~~~~~d~l~~~~~~~~~~ie~~~~f~lG~~y-s~~~~~~~~~~~g~~~~~~~-g~~giG~~R~~ 325 (449)
T Consensus 338 W~P~~~~-y~-------------------------EvsS~Snc-~d~QsrRl~iry~~~~~~~~~~htlNgt~~A~~R~l 390 (422)
T PRK05431 338 WLPGQNT-YR-------------------------EISSCSNC-TDFQARRANIRYRDEDGKPELVHTLNGSGLAVGRTL 390 (422)
T ss_pred EECCCCC-EE-------------------------EEEEECCC-CHHHHHHCCCEEECCCCCEEEEEECCCCHHHHHHHH
T ss_conf 7156685-45-------------------------24000150-148875302655179998664043115121887899
Q ss_pred HHHHHCCCCCCC-CCCCHHHCCC
Q ss_conf 332210232111-1136332032
Q gi|254780870|r 326 AAVIESSHDGKG-IIWPDSVAPF 347 (449)
Q Consensus 326 ~alle~~~d~~g-~~wP~~iaP~ 347 (449)
T Consensus 391 ~ailEn~q~~dg~i~iP~~L~~y 413 (422)
T PRK05431 391 VAILENYQQADGSVTIPEVLRPY 413 (422)
T ss_pred HHHHHHCCCCCCCEECCHHHHHH
T ss_conf 99988464899888478131201