HHsearch alignment for GI: 254780870 and conserved domain: PRK08661
>PRK08661 prolyl-tRNA synthetase; Provisional.
Probab=100.00 E-value=0 Score=544.26 Aligned_cols=360 Identities=24% Similarity=0.418 Sum_probs=313.3
Q ss_pred HHHHHHHCCCEE-CCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHH-HHCCCCHHHHHHHCCHH---
Q ss_conf 122135303200-0388111043169999999999999998669889735751246898-77197311222210402---
Q gi|254780870|r 23 HKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA--- 97 (449)
Q Consensus 23 ~~ll~~~g~i~~-~~~G~~~~lP~G~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~-~~SGh~d~~~~em~~~~--- 97 (449)
T Consensus 20 ~~vi~~a~l~d~~~VkG~~v~~P~g~~iw~~i~~~~~~~~~~~g~~~~~fP~liP~~~l~kE~~hvegF~pE~~~VT~~G 99 (478)
T PRK08661 20 TDVVKKAELADYSPVKGCMVIRPYGYAIWENIQKILDEMFKETGHENVYFPLLIPESLLQKEAEHIEGFAPEVAWVTHGG 99 (478)
T ss_pred HHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 99999718732368872799787489999999999999998639808730240668999866656615674048995478
Q ss_pred -HCCCCCCEECCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCEECCCHHHHHHHHHH
Q ss_conf -1378620003455543101100001342013402641465334566767543453166874042211886887999999
Q gi|254780870|r 98 -DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176 (449)
Q Consensus 98 -d~~~~~~~LrP~~~e~~~~i~~~~~~SYr~LPlr~y~ig~~fR~E~rp~~GL~R~ReF~q~D~~~F~~~~e~~~~e~~~ 176 (449)
T Consensus 100 ~~~l~~~l~lrPTsEt~i~~~~~~wI~SyrdLPl~l~Qw~~v~R~E~r~r~-flR~rEFl~qe~ht~h~t~eea~~~~~~ 178 (478)
T PRK08661 100 GEKLEEPLALRPTSETIIYPMFKKWIQSYRDLPLLYNQWVNVVRWEKKTRP-FLRTREFLWQEGHTAHATEEEAEEETLE 178 (478)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCC-HHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 755567631088879999999999852365269000200445865788963-1434263542120113999999999999
Q ss_pred HHHHHHHHHH-HCCCHHHHHHHCCHHCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCC
Q ss_conf 9998741111-006201223311001013113343454686770143101003477641112201210011220001363
Q gi|254780870|r 177 MFVSYLRIFH-RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255 (449)
Q Consensus 177 ~~~~~~~i~~-~lgl~~~~v~~~~~~ig~~~s~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (449)
T Consensus 179 ~~~~Y~~~~e~~LaiPvi~g~--------k~~~e-------------------kFa---------------------Ga~ 210 (478)
T PRK08661 179 MLEIYKEFAEDYLAIPVIIGK--------KTEWE-------------------KFA---------------------GAD 210 (478)
T ss_pred HHHHHHHHHHHHCCCCEECCC--------CCCCC-------------------CCC---------------------CCC
T ss_conf 999999999983787556377--------78302-------------------178---------------------986
Q ss_pred CCCCHHHCHHHHHCCCCCCCEEEEEEEECCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 21201100023303587655243211115814422311223011589647777232336663447430023322102321
Q gi|254780870|r 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335 (449)
Q Consensus 256 ~~~~~d~~~~~~~d~l~~~~~~~~~~ie~~~~f~lG~~ys~~~~~~~~~~~g~~~~~~~g~~giG~~R~~~alle~~~d~ 335 (449)
T Consensus 211 ~T~~iea-------~m~-----dGkaLQ~gtsH~LGq~fskaf~i~f~d~~g~~~~~~~ts~Gis-tR~iga~Im~H~Dd 277 (478)
T PRK08661 211 YTYTIEA-------MMP-----DGKALQIGTSHYLGQNFAKAFDIKFQDKDGKLEYVHQTSWGVS-TRLIGALIMVHGDD 277 (478)
T ss_pred CCCEEEE-------ECC-----CCCEEECCCEECCCHHHHHHCCCEEECCCCCEEEEEEECCCHH-HHHHHHHHHHHCCC
T ss_conf 5420588-------726-----8863114314216223567549699889998867887534542-78999999984799
Q ss_pred CCCCCCHHHCCCCCEEEECCCCH--HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHC
Q ss_conf 11113633203211024217887--9999999999999998698799975897970867878748998899986240235
Q gi|254780870|r 336 KGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413 (449)
Q Consensus 336 ~g~~wP~~iaP~~v~Iipi~~~~--~~~~~~A~~i~~~Lr~~Gi~v~~D~r~~~iGkK~~~Ad~~gip~~iiiG~~el~~ 413 (449)
T Consensus 278 ~GlvlPp~iAP~qVvIvPi~~~~~~~~v~~~~~~i~~~L~~~girv~~Ddrd~~pG~Kf~~~elkGvPlRieiGprDle~ 357 (478)
T PRK08661 278 KGLVLPPKIAPIQVVIIPILKKKEEEEVLEYAKELAEELKAAGIRVKLDDRDKTPGWKFYEWELKGVPLRIEIGPRDLEN 357 (478)
T ss_pred CCCCCCHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHCC
T ss_conf 86517845598308999845788789999999999999987790799817665665666661014785899977201028
Q ss_pred CEEEEEECCCCCEEEEEHHHHHHHHHHHHHH
Q ss_conf 7189999899978786199999999999872
Q gi|254780870|r 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444 (449)
Q Consensus 414 ~~Vtir~r~tg~q~~v~l~eli~~i~~~l~~ 444 (449)
T Consensus 358 ~~v~v~RRDt~eK~~v~~~~l~~~v~~lL~~ 388 (478)
T PRK08661 358 NTVVLVRRDTLEKETVSLDELVEEVPELLDE 388 (478)
T ss_pred CEEEEEECCCCCCEEECHHHHHHHHHHHHHH
T ss_conf 9799998679861466599999999999999