HHsearch alignment for GI: 254780870 and conserved domain: PRK09350

>PRK09350 lysyl-tRNA synthetase; Provisional.
Probab=98.93  E-value=1.6e-09  Score=79.68  Aligned_cols=124  Identities=17%  Similarity=0.222  Sum_probs=74.7

Q ss_pred             HHCCCCH----HHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHC-CCCHHHHHHHCCHHHCCCCCCEECCCCCCCC
Q ss_conf             1104316----9999999999999998669889735751246898771-9731122221040213786200034555431
Q gi|254780870|r   40 YSWLPLG----QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRYDSYGKEMLRLADRNDKAMIYGPTHEEVM  114 (449)
Q Consensus        40 ~~~lP~G----~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~S-Gh~d~~~~em~~~~d~~~~~~~LrP~~~e~~  114 (449)
T Consensus         5 ~~w~~~as~~~l~~Rs~i~~~iR~ff~~~gFlEVeTP~L~~~t---~~~~~~~~f~~~~~~~~~~~~~~~yL~~SP-ql~   80 (325)
T PRK09350          5 ASWQPSASIKNLLKRAAIIAEIRRFFADRGVLEVETPAMSQAT---VTDIHLVPFETRFVGPGHSQGKTLWLMTSP-EYH   80 (325)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC---CCCCCCCCEEEECCCCCCCCCCCEEEECCH-HHH
T ss_conf             8777714799999999999999999998896897798425778---876467622210256554567664550791-999


Q ss_pred             C-CCHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCEECCCHHHHHHHHHHH
Q ss_conf             0-11000013420134026414653345667675434531668740422118868879999999
Q gi|254780870|r  115 T-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM  177 (449)
Q Consensus       115 ~-~i~~~~~~SYr~LPlr~y~ig~~fR~E~rp~~GL~R~ReF~q~D~~~F~~~~e~~~~e~~~~  177 (449)
T Consensus        81 ~k~l~~~G~-------~rvfqI~~~FR~E~~~~~---H~pEFtmlE~~~~~~d~~d~m~~~e~l  134 (325)
T PRK09350         81 MKRLLAAGS-------GPIFQLCRSFRNEEAGRY---HNPEFTMLEWYRPHYDMYRLMNEVDDL  134 (325)
T ss_pred             HHHHHHCCC-------CCEEEEEHHHCCCCCCCC---CCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             999986678-------855896113228999876---573778889998154899999999999