HHsearch alignment for GI: 254780870 and conserved domain: PRK09350
>PRK09350 lysyl-tRNA synthetase; Provisional.
Probab=98.93 E-value=1.6e-09 Score=79.68 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=74.7
Q ss_pred HHCCCCH----HHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHC-CCCHHHHHHHCCHHHCCCCCCEECCCCCCCC
Q ss_conf 1104316----9999999999999998669889735751246898771-9731122221040213786200034555431
Q gi|254780870|r 40 YSWLPLG----QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114 (449)
Q Consensus 40 ~~~lP~G----~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~S-Gh~d~~~~em~~~~d~~~~~~~LrP~~~e~~ 114 (449)
T Consensus 5 ~~w~~~as~~~l~~Rs~i~~~iR~ff~~~gFlEVeTP~L~~~t---~~~~~~~~f~~~~~~~~~~~~~~~yL~~SP-ql~ 80 (325)
T PRK09350 5 ASWQPSASIKNLLKRAAIIAEIRRFFADRGVLEVETPAMSQAT---VTDIHLVPFETRFVGPGHSQGKTLWLMTSP-EYH 80 (325)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC---CCCCCCCCEEEECCCCCCCCCCCEEEECCH-HHH
T ss_conf 8777714799999999999999999998896897798425778---876467622210256554567664550791-999
Q ss_pred C-CCHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCEECCCHHHHHHHHHHH
Q ss_conf 0-11000013420134026414653345667675434531668740422118868879999999
Q gi|254780870|r 115 T-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177 (449)
Q Consensus 115 ~-~i~~~~~~SYr~LPlr~y~ig~~fR~E~rp~~GL~R~ReF~q~D~~~F~~~~e~~~~e~~~~ 177 (449)
T Consensus 81 ~k~l~~~G~-------~rvfqI~~~FR~E~~~~~---H~pEFtmlE~~~~~~d~~d~m~~~e~l 134 (325)
T PRK09350 81 MKRLLAAGS-------GPIFQLCRSFRNEEAGRY---HNPEFTMLEWYRPHYDMYRLMNEVDDL 134 (325)
T ss_pred HHHHHHCCC-------CCEEEEEHHHCCCCCCCC---CCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999986678-------855896113228999876---573778889998154899999999999