HHsearch alignment for GI: 254780870 and conserved domain: TIGR02367
>TIGR02367 PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, e.g. trimethylamine methyltransferase. .
Probab=98.88 E-value=2.2e-09 Score=78.79 Aligned_cols=130 Identities=18% Similarity=0.227 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCC--CHHHHHHHCCHHHCCCCCCEECCCCCCCCCCCHHHCCCCC
Q ss_conf 99999999999999866988973575124689877197--3112222104021378620003455543101100001342
Q gi|254780870|r 48 KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR--YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125 (449)
Q Consensus 48 ~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~SGh--~d~~~~em~~~~d~~~~~~~LrP~~~e~~~~i~~~~~~SY 125 (449)
T Consensus 240 ~ylGkler~it~ffvdrGfleiksPiliP~ey~ermGi~ndtelskqifrv----dkn~ClrPmlaP~lynylrkld--- 312 (453)
T TIGR02367 240 DYLGKLEREITKFFVDRGFLEIKSPILIPLEYVERMGIDNDTELSKQIFRV----DKNLCLRPMLAPTLYNYLRKLD--- 312 (453)
T ss_pred HHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHHH----HHHHHCCCCHHHHHHHHHHHHH---
T ss_conf 675467666766653124023236310105688650776402566666644----1001012100056899999987---
Q ss_pred CCC--CEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCEE--CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 013--40264146533456676754345316687404221--1886887999999999874111100620122
Q gi|254780870|r 126 RNL--PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF--DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194 (449)
Q Consensus 126 r~L--Plr~y~ig~~fR~E~rp~~GL~R~ReF~q~D~~~F--~~~~e~~~~e~~~~~~~~~~i~~~lgl~~~~ 194 (449)
T Consensus 313 r~lP~Pik~fe~GPCyrkesdGke---hleeftm~nfCqmGsGCtrenle~~i-------~~fl~~l~idf~i 375 (453)
T TIGR02367 313 RILPDPIKVFEVGPCYRKESDGKE---HLEEFTMLNFCQMGSGCTRENLEALI-------KEFLDYLEIDFKI 375 (453)
T ss_pred HHCCCCEEEEEECCCCCCCCCCHH---HHHHHHHHHHHHCCCCCCHHHHHHHH-------HHHHHHHCCCEEE
T ss_conf 537896479860675243565335---66666655543147873267799999-------9988761542478