HHsearch alignment for GI: 254780870 and conserved domain: cd00670
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=4.8e-42 Score=285.21 Aligned_cols=160 Identities=28% Similarity=0.398 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHHHHHHCCHHHCC----CCCCEECCCCCCCCCCCHHHC
Q ss_conf 6999999999999999866988973575124689877197311222210402137----862000345554310110000
Q gi|254780870|r 46 GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSH 121 (449)
Q Consensus 46 G~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~SGh~d~~~~em~~~~d~~----~~~~~LrP~~~e~~~~i~~~~ 121 (449)
T Consensus 1 Ga~L~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~sg~~~~f~~~~y~v~~~~~~~~~~~~~L~PTsE~~~~~~~~~~ 80 (235)
T cd00670 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGE 80 (235)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCHHHHHHHHCC
T ss_conf 98899999999999999869989989855789999223867545205289823776667873899307869999999483
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHH
Q ss_conf 13420134026414653345667675434531668740422118868879999999998741111006201223311001
Q gi|254780870|r 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201 (449)
Q Consensus 122 ~~SYr~LPlr~y~ig~~fR~E~rp~~GL~R~ReF~q~D~~~F~~~~e~~~~e~~~~~~~~~~i~~~lgl~~~~v~~~~~~ 201 (449)
T Consensus 81 i~s~~dLPlr~~~~s~~fR~E~~~~~Gl~Rv~eF~k~E~~~~-~~~e~~~~~~~~~~~~~~~i~~~L~l~y~v~~~~~~d 159 (235)
T cd00670 81 ILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVF-GEPEEAEEERREWLELAEEIARELGLPVRVVVADDPF 159 (235)
T ss_pred CCCHHHCCEEEEEECCEECCCCCCCCCCEEEEEEEEEEEEEE-ECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 287687995454456533367899999836789998507999-6889999999999999999999869977999758613
Q ss_pred CCCCH
Q ss_conf 01311
Q gi|254780870|r 202 IGGDL 206 (449)
Q Consensus 202 ig~~~ 206 (449)
T Consensus 160 ~g~~~ 164 (235)
T cd00670 160 FGRGG 164 (235)
T ss_pred CCCCC
T ss_conf 37664