HHsearch alignment for GI: 254780870 and conserved domain: cd00768
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=100.00 E-value=5.6e-40 Score=272.18 Aligned_cols=211 Identities=21% Similarity=0.309 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHHHHHHCCHHHCCCCCCEECCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 99999999999998669889735751246898771973112222104021378620003455543101100001342013
Q gi|254780870|r 49 ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128 (449)
Q Consensus 49 i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~SGh~d~~~~em~~~~d~~~~~~~LrP~~~e~~~~i~~~~~~SYr~L 128 (449)
T Consensus 1 ~r~~ie~~~r~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~---~~~~~~~~~~~~~L~pt~e~~~~~~~~~~~---~dL 74 (211)
T cd00768 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKD---LLPVGAENEEDLYLRPTLEPGLVRLFVSHI---RKL 74 (211)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCEECCHHHHHHCCCCHHH---HHHHCCCCCCEEEEECCCCHHHHHHHHHHH---HHC
T ss_conf 97899999999999869989999834279999750676222---301104679769995168499999975247---657
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHCCCCHHH
Q ss_conf 40264146533456676754345316687404221188688799999999987411110062012233110010131133
Q gi|254780870|r 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208 (449)
Q Consensus 129 Plr~y~ig~~fR~E~rp~~GL~R~ReF~q~D~~~F~~~~e~~~~e~~~~~~~~~~i~~~lgl~~~~v~~~~~~ig~~~s~ 208 (449)
T Consensus 75 P~r~~~~~~~fR~E~~~-~Gl~RvreF~~~e~~~f~-~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~--------- 143 (211)
T cd00768 75 PLRLAEIGPAFRNEGGR-RGLRRVREFTQLEGEVFG-EDGEEASEFEELIELTEELLRALGIKLDIVFVEK--------- 143 (211)
T ss_pred CHHHHEECCEECCCCCC-CCCCCCCCEEEEEEEEEE-CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---------
T ss_conf 77864320056057888-884460468898479998-8488899999999999999997499888699997---------
Q ss_pred HHHHHCCCCCCEEEECCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCCCCCCHHHCHHHHHCCCCCCCEEEEEEEECCCEE
Q ss_conf 43454686770143101003477641112201210011220001363212011000233035876552432111158144
Q gi|254780870|r 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288 (449)
Q Consensus 209 e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~d~l~~~~~~~~~~ie~~~~f 288 (449)
T Consensus 144 ------~~~--------------------------------~~~~~~a~~~~Die---~~~--p-----~~~~~Ev~s~~ 175 (211)
T cd00768 144 ------TPG--------------------------------EFSPGGAGPGFEIE---VDH--P-----EGRGLEIGSGG 175 (211)
T ss_pred ------CCC--------------------------------CCCCCCCEEEEEEE---EEC--C-----CCCEEEEECEE
T ss_conf ------786--------------------------------76664523545578---983--7-----89799993546
Q ss_pred ECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 223112230115896477772323366634474300
Q gi|254780870|r 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324 (449)
Q Consensus 289 ~lG~~ys~~~~~~~~~~~g~~~~~~~g~~giG~~R~ 324 (449)
T Consensus 176 ~~~d~qsr~~~i~y~~~dg~~~~~~~~~~gl~v~Rl 211 (211)
T cd00768 176 YRQDEQARAADLYFLDEALEYRYPPTIGFGLGLERL 211 (211)
T ss_pred CCCCHHHHHCCCEEECCCCCEEEEEEEECEECCCCC
T ss_conf 167787884698999999999875563032413669