HHsearch alignment for GI: 254780870 and conserved domain: cd00770

>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00  E-value=1.1e-41  Score=282.84  Aligned_cols=272  Identities=16%  Similarity=0.277  Sum_probs=207.7

Q ss_pred             HCCCCCCCCCCHHHHHHHCC--CEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHH
Q ss_conf             10711141256122135303--2000388111043169999999999999998669889735751246898771973112
Q gi|254780870|r   12 QENPRDAEIASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY   89 (449)
Q Consensus        12 ~~~~~d~~~~~~~ll~~~g~--i~~~~~G~~~~lP~G~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~SGh~d~~   89 (449)
T Consensus        15 ~f~~rdH~~Lg~~L~L~dfe~~akvsG~rf~~l~g~ga~Le~AL~~f~~d~~~~~Gy~eV~tP~iv~~~~~~~sG~~~~~   94 (297)
T cd00770          15 DFKPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKF   94 (297)
T ss_pred             CCCCCCHHHHHHHCCCEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCC
T ss_conf             99988999999977881023224689877799888899999999999999999879989988530138998543578763


Q ss_pred             HHHHCCHHHCCCCCCEECCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCC----CCCCCCCEEEEEEECCEECC
Q ss_conf             22210402137862000345554310110000134201340264146533456676----75434531668740422118
Q gi|254780870|r   90 GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDL  165 (449)
Q Consensus        90 ~~em~~~~d~~~~~~~LrP~~~e~~~~i~~~~~~SYr~LPlr~y~ig~~fR~E~rp----~~GL~R~ReF~q~D~~~F~~  165 (449)
T Consensus        95 ~e~~y~i~---~~~~~Li~tae~~l~~~~~~~~~~~~dLPlr~~~~s~cfR~Eags~G~d~~GL~RvhqF~kvE~~~~-c  170 (297)
T cd00770          95 DEQLYKVE---GEDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVF-T  170 (297)
T ss_pred             HHHHHCCC---CHHHHHHHCCCCCEEEEEEEEECCHHHCCCCEEECCCHHHHCCCCCCCCCCCEEEEEECCEEEEEEE-C
T ss_conf             56521035---5055554405666223442003177558865022463413203777755554578872110037761-6


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHCCHHHHHCC
Q ss_conf             86887999999999874111100620122331100101311334345468677014310100347764111220121001
Q gi|254780870|r  166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL  245 (449)
Q Consensus       166 ~~e~~~~e~~~~~~~~~~i~~~lgl~~~~v~~~~~~ig~~~s~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (449)
T Consensus       171 ~pe~s~~~~e~~~~~~e~~l~~L~lpyrvv~~~tgdlg~~a~~~~Di---------------------------------  217 (297)
T cd00770         171 KPEESWEELEELISNAEEILQELGLPYRVVNICTGDLGFAAAKKYDI---------------------------------  217 (297)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHEEEE---------------------------------
T ss_conf             87889999999999999999981550145012465557322220765---------------------------------


Q ss_pred             CCCCCCCCCCCCCCHHHCHHHHHCCCCCCCEEEEEEEECCCEEECCCCC-CCCCEEEEECCCC-CCCCCCC-CCCCCCCC
Q ss_conf             1220001363212011000233035876552432111158144223112-2301158964777-7232336-66344743
Q gi|254780870|r  246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-SLPMSATFKGADG-KDHYVQM-GSYGIGAM  322 (449)
Q Consensus       246 ~~~~~~~~~~~~~~~d~~~~~~~d~l~~~~~~~~~~ie~~~~f~lG~~y-s~~~~~~~~~~~g-~~~~~~~-g~~giG~~  322 (449)
T Consensus       218 E~W~P~~~~-y~-------------------------EvsS~Snc~-DfQarRl~iry~~~~~~~~~~~htlngt~~A~~  270 (297)
T cd00770         218 EAWMPGQGK-YR-------------------------EISSCSNCT-DFQARRLNIRYRDKKDGKKQYVHTLNGTALATP  270 (297)
T ss_pred             EEEEHHHCC-EE-------------------------EEEECCCCH-HHHHHHCCCEEECCCCCCEEEEEEECCCCCHHH
T ss_conf             631054197-68-------------------------861315400-066652367773489995265488136320888


Q ss_pred             CCHHHHHHCCCCCCC-CCCCHHHCCC
Q ss_conf             002332210232111-1136332032
Q gi|254780870|r  323 RVVAAVIESSHDGKG-IIWPDSVAPF  347 (449)
Q Consensus       323 R~~~alle~~~d~~g-~~wP~~iaP~  347 (449)
T Consensus       271 R~l~allEn~q~~dg~v~iP~~L~~y  296 (297)
T cd00770         271 RTIVAILENYQTEDGSVVIPEVLRPY  296 (297)
T ss_pred             HHHHHHHHHCCCCCCCEECCCCCCCC
T ss_conf             89999997273899878688003131