HHsearch alignment for GI: 254780870 and conserved domain: cd00770
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=1.1e-41 Score=282.84 Aligned_cols=272 Identities=16% Similarity=0.277 Sum_probs=207.7
Q ss_pred HCCCCCCCCCCHHHHHHHCC--CEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHH
Q ss_conf 10711141256122135303--2000388111043169999999999999998669889735751246898771973112
Q gi|254780870|r 12 QENPRDAEIASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89 (449)
Q Consensus 12 ~~~~~d~~~~~~~ll~~~g~--i~~~~~G~~~~lP~G~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~SGh~d~~ 89 (449)
T Consensus 15 ~f~~rdH~~Lg~~L~L~dfe~~akvsG~rf~~l~g~ga~Le~AL~~f~~d~~~~~Gy~eV~tP~iv~~~~~~~sG~~~~~ 94 (297)
T cd00770 15 DFKPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKF 94 (297)
T ss_pred CCCCCCHHHHHHHCCCEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCC
T ss_conf 99988999999977881023224689877799888899999999999999999879989988530138998543578763
Q ss_pred HHHHCCHHHCCCCCCEECCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCC----CCCCCCCEEEEEEECCEECC
Q ss_conf 22210402137862000345554310110000134201340264146533456676----75434531668740422118
Q gi|254780870|r 90 GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDL 165 (449)
Q Consensus 90 ~~em~~~~d~~~~~~~LrP~~~e~~~~i~~~~~~SYr~LPlr~y~ig~~fR~E~rp----~~GL~R~ReF~q~D~~~F~~ 165 (449)
T Consensus 95 ~e~~y~i~---~~~~~Li~tae~~l~~~~~~~~~~~~dLPlr~~~~s~cfR~Eags~G~d~~GL~RvhqF~kvE~~~~-c 170 (297)
T cd00770 95 DEQLYKVE---GEDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVF-T 170 (297)
T ss_pred HHHHHCCC---CHHHHHHHCCCCCEEEEEEEEECCHHHCCCCEEECCCHHHHCCCCCCCCCCCEEEEEECCEEEEEEE-C
T ss_conf 56521035---5055554405666223442003177558865022463413203777755554578872110037761-6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHCCHHHHHCC
Q ss_conf 86887999999999874111100620122331100101311334345468677014310100347764111220121001
Q gi|254780870|r 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245 (449)
Q Consensus 166 ~~e~~~~e~~~~~~~~~~i~~~lgl~~~~v~~~~~~ig~~~s~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (449)
T Consensus 171 ~pe~s~~~~e~~~~~~e~~l~~L~lpyrvv~~~tgdlg~~a~~~~Di--------------------------------- 217 (297)
T cd00770 171 KPEESWEELEELISNAEEILQELGLPYRVVNICTGDLGFAAAKKYDI--------------------------------- 217 (297)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHEEEE---------------------------------
T ss_conf 87889999999999999999981550145012465557322220765---------------------------------
Q ss_pred CCCCCCCCCCCCCCHHHCHHHHHCCCCCCCEEEEEEEECCCEEECCCCC-CCCCEEEEECCCC-CCCCCCC-CCCCCCCC
Q ss_conf 1220001363212011000233035876552432111158144223112-2301158964777-7232336-66344743
Q gi|254780870|r 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-SLPMSATFKGADG-KDHYVQM-GSYGIGAM 322 (449)
Q Consensus 246 ~~~~~~~~~~~~~~~d~~~~~~~d~l~~~~~~~~~~ie~~~~f~lG~~y-s~~~~~~~~~~~g-~~~~~~~-g~~giG~~ 322 (449)
T Consensus 218 E~W~P~~~~-y~-------------------------EvsS~Snc~-DfQarRl~iry~~~~~~~~~~~htlngt~~A~~ 270 (297)
T cd00770 218 EAWMPGQGK-YR-------------------------EISSCSNCT-DFQARRLNIRYRDKKDGKKQYVHTLNGTALATP 270 (297)
T ss_pred EEEEHHHCC-EE-------------------------EEEECCCCH-HHHHHHCCCEEECCCCCCEEEEEEECCCCCHHH
T ss_conf 631054197-68-------------------------861315400-066652367773489995265488136320888
Q ss_pred CCHHHHHHCCCCCCC-CCCCHHHCCC
Q ss_conf 002332210232111-1136332032
Q gi|254780870|r 323 RVVAAVIESSHDGKG-IIWPDSVAPF 347 (449)
Q Consensus 323 R~~~alle~~~d~~g-~~wP~~iaP~ 347 (449)
T Consensus 271 R~l~allEn~q~~dg~v~iP~~L~~y 296 (297)
T cd00770 271 RTIVAILENYQTEDGSVVIPEVLRPY 296 (297)
T ss_pred HHHHHHHHHCCCCCCCEECCCCCCCC
T ss_conf 89999997273899878688003131