HHsearch alignment for GI: 254780870 and conserved domain: cd00776
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.57 E-value=1.5e-07 Score=67.21 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHHHHHHCCHHHCCCCCCEECCCCCCCCCCCHHHCCCCC
Q ss_conf 69999999999999998669889735751246898771973112222104021378620003455543101100001342
Q gi|254780870|r 46 GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125 (449)
Q Consensus 46 G~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~SGh~d~~~~em~~~~d~~~~~~~LrP~~~e~~~~i~~~~~~SY 125 (449)
T Consensus 23 ~l~~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~~---eg~-----a~~f~~-~~~~~~~yL~~-Spel~Kqlli~G---- 88 (322)
T cd00776 23 IFRIRSEVLRAFREFLRENGFTEVHTPKITSTDT---EGG-----AELFKV-SYFGKPAYLAQ-SPQLYKEMLIAA---- 88 (322)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC---CCC-----CCCCCC-CCCCCCEEECC-CHHHHHHHHHCC----
T ss_conf 9999999999999999988999997984007889---865-----466762-10587600154-858899997534----
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCC-EEEEEEECCE-ECCCHHHHHH
Q ss_conf 013402641465334566767543453-1668740422-1188688799
Q gi|254780870|r 126 RNLPFTFYQIQLKFRDELRPRFGVMRS-REFLMKDAYS-FDLTPEGSKH 172 (449)
Q Consensus 126 r~LPlr~y~ig~~fR~E~rp~~GL~R~-ReF~q~D~~~-F~~~~e~~~~ 172 (449)
T Consensus 89 --~~-rVfei~~~FR~E~~~-t~--rH~pEFTmlE~e~af~~d~~d~m~ 131 (322)
T cd00776 89 --LE-RVYEIGPVFRAEKSN-TR--RHLSEFWMLEAEMAFIEDYNEVMD 131 (322)
T ss_pred --CC-CEEEECCEEECCCCC-CC--CCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf --24-438872614079998-75--347888765255523328999999