HHsearch alignment for GI: 254780870 and conserved domain: cd00776

>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.57  E-value=1.5e-07  Score=67.21  Aligned_cols=107  Identities=21%  Similarity=0.254  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHHHHHHCCHHHCCCCCCEECCCCCCCCCCCHHHCCCCC
Q ss_conf             69999999999999998669889735751246898771973112222104021378620003455543101100001342
Q gi|254780870|r   46 GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY  125 (449)
Q Consensus        46 G~~i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~SGh~d~~~~em~~~~d~~~~~~~LrP~~~e~~~~i~~~~~~SY  125 (449)
T Consensus        23 ~l~~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~~---eg~-----a~~f~~-~~~~~~~yL~~-Spel~Kqlli~G----   88 (322)
T cd00776          23 IFRIRSEVLRAFREFLRENGFTEVHTPKITSTDT---EGG-----AELFKV-SYFGKPAYLAQ-SPQLYKEMLIAA----   88 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC---CCC-----CCCCCC-CCCCCCEEECC-CHHHHHHHHHCC----
T ss_conf             9999999999999999988999997984007889---865-----466762-10587600154-858899997534----


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCC-EEEEEEECCE-ECCCHHHHHH
Q ss_conf             013402641465334566767543453-1668740422-1188688799
Q gi|254780870|r  126 RNLPFTFYQIQLKFRDELRPRFGVMRS-REFLMKDAYS-FDLTPEGSKH  172 (449)
Q Consensus       126 r~LPlr~y~ig~~fR~E~rp~~GL~R~-ReF~q~D~~~-F~~~~e~~~~  172 (449)
T Consensus        89 --~~-rVfei~~~FR~E~~~-t~--rH~pEFTmlE~e~af~~d~~d~m~  131 (322)
T cd00776          89 --LE-RVYEIGPVFRAEKSN-TR--RHLSEFWMLEAEMAFIEDYNEVMD  131 (322)
T ss_pred             --CC-CEEEECCEEECCCCC-CC--CCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             --24-438872614079998-75--347888765255523328999999