HHsearch alignment for GI: 254780870 and conserved domain: cd00860
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.89 E-value=1e-22 Score=163.09 Aligned_cols=91 Identities=27% Similarity=0.383 Sum_probs=87.3
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHCCEEEEEECCCCC
Q ss_conf 32110242178879999999999999998698799975897970867878748998899986240235718999989997
Q gi|254780870|r 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425 (449)
Q Consensus 346 P~~v~Iipi~~~~~~~~~~A~~i~~~Lr~~Gi~v~~D~r~~~iGkK~~~Ad~~gip~~iiiG~~el~~~~Vtir~r~tg~ 425 (449)
T Consensus 1 P~QV~Iipi~---~~~~~ya~~i~~~Lr~~girv~~D~~~~~lg~ki~~a~~~~ip~~iiiG~~E~~~~~v~vr~r~~~~ 77 (91)
T cd00860 1 PVQVVVIPVT---DEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGD 77 (91)
T ss_pred CEEEEEEEEC---HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECHHHHHCCEEEEEECCCCC
T ss_conf 9289999888---8799999999999998899899965889875999999981999899996046538979999989993
Q ss_pred EEEEEHHHHHHHHH
Q ss_conf 87861999999999
Q gi|254780870|r 426 REDMSLEEVINYAS 439 (449)
Q Consensus 426 q~~v~l~eli~~i~ 439 (449)
T Consensus 78 q~~v~~~~~i~~lk 91 (91)
T cd00860 78 LGSMSLDEFIEKLK 91 (91)
T ss_pred EEEEEHHHHHHHHC
T ss_conf 67877999999749