HHsearch alignment for GI: 254780870 and conserved domain: cd00860

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.89  E-value=1e-22  Score=163.09  Aligned_cols=91  Identities=27%  Similarity=0.383  Sum_probs=87.3

Q ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHCCEEEEEECCCCC
Q ss_conf             32110242178879999999999999998698799975897970867878748998899986240235718999989997
Q gi|254780870|r  346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI  425 (449)
Q Consensus       346 P~~v~Iipi~~~~~~~~~~A~~i~~~Lr~~Gi~v~~D~r~~~iGkK~~~Ad~~gip~~iiiG~~el~~~~Vtir~r~tg~  425 (449)
T Consensus         1 P~QV~Iipi~---~~~~~ya~~i~~~Lr~~girv~~D~~~~~lg~ki~~a~~~~ip~~iiiG~~E~~~~~v~vr~r~~~~   77 (91)
T cd00860           1 PVQVVVIPVT---DEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGD   77 (91)
T ss_pred             CEEEEEEEEC---HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECHHHHHCCEEEEEECCCCC
T ss_conf             9289999888---8799999999999998899899965889875999999981999899996046538979999989993


Q ss_pred             EEEEEHHHHHHHHH
Q ss_conf             87861999999999
Q gi|254780870|r  426 REDMSLEEVINYAS  439 (449)
Q Consensus       426 q~~v~l~eli~~i~  439 (449)
T Consensus        78 q~~v~~~~~i~~lk   91 (91)
T cd00860          78 LGSMSLDEFIEKLK   91 (91)
T ss_pred             EEEEEHHHHHHHHC
T ss_conf             67877999999749